BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16939
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 29 AAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNV 88
+ + G V S GS V + +EE Q+ + W+ D N P TL N
Sbjct: 18 SGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFD-GNKP----DTLGLNT 70
Query: 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGY 148
+ KW PQ D+L HP R FITHGG + + EA G+P +G+P F DQ N+ + RG
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGA 130
Query: 149 ALIEPIQTLTKQSFLKNAQTMLNDP 173
A+ T + L + ++NDP
Sbjct: 131 AVRVDFNTXSSTDLLNALKRVINDP 155
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVF----- 89
VY+SFGSVV P E T L E ++ P W DP + LP
Sbjct: 276 VYISFGSVVTPPP-HELTALA--ESLEECGFPFIW--SFRGDP---KEKLPKGFLERTKT 327
Query: 90 ---IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 142
I W PQ +IL H ++ +F+TH G +S++E GVP++ PFFGDQ N +L
Sbjct: 328 KGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTIL 383
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK-- 92
VY+SFG+V P + E + ++P W + A+ F++K
Sbjct: 274 VYISFGTVTTPPPAE---VVALSEALEASRVPFIWSLRD------KARVHLPEGFLEKTR 324
Query: 93 -------WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRN 139
W PQ ++LAH + F+TH G +SL E+ + GVP++ PFFGDQ N
Sbjct: 325 GYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID----ITNDPVLNAK---TL 84
G VY++FGS T ++ E L F K W I I + +++ +
Sbjct: 295 GSVVYVNFGST---TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEI 351
Query: 85 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 136
D I W PQ +L HP++ F+TH G +S E+ GVP+L PFF DQ
Sbjct: 352 ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143
+P NV + +W PQ DIL FITH G+ S MEA S VP++ VP +Q N +
Sbjct: 303 VPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 144 RHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173
G P +T + + + +DP
Sbjct: 361 VELGLGRHIPRDQVTAEKLREAVLAVASDP 390
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 93 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIE 152
W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q N VLL A +
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 153 P 153
P
Sbjct: 406 P 406
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143
LPDNV + W PQ IL +L F+TH G E + P++ VP DQ+ N +L
Sbjct: 281 LPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
Query: 144 RHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173
+ G A + T + A +++DP
Sbjct: 339 QGLGVARKLATEEATADLLRETALALVDDP 368
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV-LLRHRGY 148
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L++ G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 149 AL 150
L
Sbjct: 396 GL 397
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV-LLRHRGY 148
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L++ G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 149 AL 150
L
Sbjct: 396 GL 397
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 73 ITNDPVLNAKTL---PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLG 129
+ + P L+ L P NV ++ W PQ +L P++ L + HGG + + A GVP L
Sbjct: 276 VASGPSLDVSGLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLS 333
Query: 130 VPFFGDQY 137
P+ GD +
Sbjct: 334 FPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 136
LP NV +W P +LAH R +THG +++EA + GVP++ VP F +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVP 131
LP NV +W P +L + +THGG +L EA G P++ VP
Sbjct: 295 LPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVP 131
LP NV +W P +L + +THGG +L EA G P++ VP
Sbjct: 295 LPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 82 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 141
+ LP+ V +P + I P + + HGG + + S GVP + VP + + +
Sbjct: 280 QPLPEGVLAAGQFPLSAIX--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 142 LLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172
LL G + P + +S L + +D
Sbjct: 338 LLHAAGAGVEVPWEQAGVESVLAACARIRDD 368
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 82 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 141
+ LP+ V +P + I P + + HGG + + S GVP + VP + + +
Sbjct: 279 QPLPEGVLAAGQFPLSAIX--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 336
Query: 142 LLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172
LL G + P + +S L + +D
Sbjct: 337 LLHAAGAGVEVPWEQAGVESVLAACARIRDD 367
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV- 141
TLP NV W P +L + HGG ++M A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 142 -LLRHRGYALI 151
+ RG L+
Sbjct: 338 EAVSRRGIGLV 348
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143
LPDN I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 144 RHRGYALIEPIQTLTK--QSFLKNAQTMLND 172
G + P + + F + T+L D
Sbjct: 326 AAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143
LPDN I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 144 RHRGYALIEPIQTLTK--QSFLKNAQTMLND 172
G + P + + F + T+L D
Sbjct: 326 AAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 30.4 bits (67), Expect = 0.47, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 69 WKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100
+ +D T P N TLP+N W P+ IL
Sbjct: 2 YHLDTTAPPPTNLSTLPNNTLFHLWRPRAHIL 33
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 30.4 bits (67), Expect = 0.47, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 69 WKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100
+ +D T P N TLP+N W P+ IL
Sbjct: 2 YHLDTTAPPPTNLSTLPNNTLFHLWRPRAHIL 33
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV- 141
TLP NV W P +L + HGG ++ A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 142 -LLRHRGYALI 151
+ RG L+
Sbjct: 338 EAVSRRGIGLV 348
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 85 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR 144
P NV + +W P +L I HGG +L+ A + GVP +P Q N +L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 145 HRG 147
G
Sbjct: 345 GLG 347
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 85 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR 144
P NV + +W P +L I HGG +L+ A + GVP +P Q N +L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 145 HRG 147
G
Sbjct: 345 GLG 347
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 KLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69
K+ S+ F D ++ +A GG V + G+ +DP+ + LG + ++P+ W
Sbjct: 269 KISSIRFGD-----EEFKEAKPGGLV--AIGTYLDPSLTKADNLLGSIITLADAEVPVLW 321
Query: 70 KIDI 73
I I
Sbjct: 322 NIRI 325
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 KLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69
K+ S+ F D ++ +A GG V + G+ +DP+ + LG + ++P+ W
Sbjct: 275 KISSIRFGD-----EEFKEAKPGGLV--AIGTYLDPSLTKADNLLGSIITLADAEVPVLW 327
Query: 70 KIDI 73
I I
Sbjct: 328 NIRI 331
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 KLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69
K+ S+ F D ++ +A GG V + G+ +DP+ + LG + ++P+ W
Sbjct: 263 KISSIRFGD-----EEFKEAKPGGLV--AIGTYLDPSLTKADNLLGSIITLADAEVPVLW 315
Query: 70 KIDI 73
I I
Sbjct: 316 NIRI 319
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 KLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69
K+ S+ F D ++ +A GG V + G+ +DP+ + LG + ++P+ W
Sbjct: 274 KISSIRFGD-----EEFKEAKPGGLV--AIGTYLDPSLTKADNLLGSIITLADAEVPVLW 326
Query: 70 KIDI 73
I I
Sbjct: 327 NIRI 330
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 169 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 228
Query: 61 KQ 62
Q
Sbjct: 229 SQ 230
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
Query: 61 KQ 62
Q
Sbjct: 227 SQ 228
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
Query: 61 KQ 62
Q
Sbjct: 227 SQ 228
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 144 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 203
Query: 61 KQ 62
Q
Sbjct: 204 SQ 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
Query: 61 KQ 62
Q
Sbjct: 227 SQ 228
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 147 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 206
Query: 61 KQ 62
Q
Sbjct: 207 SQ 208
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208
Query: 61 KQ 62
Q
Sbjct: 209 SQ 210
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 VSVLNRAVKLCSMCFIDG-LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVF 60
++VL+R KL ++ D +SD+ A K +Y+S + D L+ L LE+F
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208
Query: 61 KQ--LKLPI 67
Q L PI
Sbjct: 209 SQECLNKPI 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,886,872
Number of Sequences: 62578
Number of extensions: 191776
Number of successful extensions: 386
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 45
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)