Query psy16939
Match_columns 174
No_of_seqs 155 out of 1208
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 17:33:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03392 egt ecdysteroid UDP-g 100.0 1.9E-35 4.2E-40 244.1 18.6 165 5-173 263-433 (507)
2 PF00201 UDPGT: UDP-glucoronos 100.0 2.5E-35 5.4E-40 244.0 12.1 149 18-173 261-410 (500)
3 PLN02670 transferase, transfer 100.0 1E-31 2.2E-36 219.6 16.6 150 21-173 266-430 (472)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.1E-31 4.5E-36 217.2 16.4 147 22-173 253-411 (451)
5 PLN03004 UDP-glycosyltransfera 100.0 2.2E-31 4.8E-36 216.6 15.8 150 21-173 258-425 (451)
6 PLN02992 coniferyl-alcohol glu 100.0 5.1E-31 1.1E-35 215.7 16.6 162 9-173 234-428 (481)
7 PLN02554 UDP-glycosyltransfera 100.0 2.4E-31 5.3E-36 218.9 14.5 148 20-171 261-439 (481)
8 PLN02208 glycosyltransferase f 100.0 8.5E-31 1.8E-35 213.2 16.5 152 19-173 237-402 (442)
9 PLN02207 UDP-glycosyltransfera 100.0 7.7E-31 1.7E-35 214.2 16.2 147 21-171 263-425 (468)
10 PLN02152 indole-3-acetate beta 100.0 1.3E-30 2.8E-35 212.4 15.3 149 21-173 249-418 (455)
11 PLN02555 limonoid glucosyltran 100.0 2.1E-30 4.6E-35 212.3 16.5 150 20-173 264-430 (480)
12 PLN02210 UDP-glucosyl transfer 100.0 2.1E-30 4.6E-35 211.8 16.4 150 21-173 257-416 (456)
13 PLN02764 glycosyltransferase f 100.0 3E-30 6.4E-35 209.7 16.8 151 20-173 244-408 (453)
14 PLN02167 UDP-glycosyltransfera 100.0 3.1E-30 6.7E-35 212.1 15.7 149 21-173 268-435 (475)
15 PLN00414 glycosyltransferase f 100.0 5.1E-30 1.1E-34 208.8 16.7 150 21-173 240-403 (446)
16 PLN02562 UDP-glycosyltransfera 100.0 3E-30 6.6E-35 210.6 14.8 147 22-173 262-414 (448)
17 PLN00164 glucosyltransferase; 100.0 7E-30 1.5E-34 209.9 16.7 151 20-173 259-432 (480)
18 PLN02173 UDP-glucosyl transfer 100.0 7.7E-30 1.7E-34 207.5 16.1 147 22-173 253-409 (449)
19 PLN03007 UDP-glucosyltransfera 100.0 5.6E-30 1.2E-34 211.0 15.4 151 20-173 272-441 (482)
20 PLN02448 UDP-glycosyltransfera 100.0 1.1E-29 2.4E-34 208.1 15.9 147 22-173 263-416 (459)
21 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.4E-29 5.1E-34 206.4 15.6 148 21-171 271-432 (477)
22 PLN03015 UDP-glucosyl transfer 100.0 5.1E-29 1.1E-33 203.2 16.9 159 9-171 238-425 (470)
23 COG1819 Glycosyl transferases, 100.0 2.1E-28 4.6E-33 197.6 14.3 155 9-173 215-369 (406)
24 TIGR01426 MGT glycosyltransfer 100.0 9.3E-28 2E-32 193.4 14.8 163 4-173 197-360 (392)
25 PLN02534 UDP-glycosyltransfera 100.0 1.8E-27 3.8E-32 195.5 16.3 148 21-171 271-443 (491)
26 KOG1192|consensus 100.0 3.1E-27 6.8E-32 195.3 16.4 153 21-173 266-423 (496)
27 cd03784 GT1_Gtf_like This fami 100.0 3.8E-27 8.3E-32 190.1 15.5 146 19-172 227-372 (401)
28 PF13528 Glyco_trans_1_3: Glyc 99.8 7.7E-19 1.7E-23 137.7 13.4 121 32-169 192-317 (318)
29 PRK12446 undecaprenyldiphospho 99.8 5.3E-19 1.1E-23 140.8 12.4 135 32-173 185-326 (352)
30 PF04101 Glyco_tran_28_C: Glyc 99.8 5.7E-21 1.2E-25 137.1 -0.2 136 34-173 1-145 (167)
31 COG0707 MurG UDP-N-acetylgluco 99.8 8.4E-19 1.8E-23 139.2 10.8 137 31-173 182-325 (357)
32 TIGR00661 MJ1255 conserved hyp 99.7 4.5E-17 9.8E-22 128.3 14.0 123 32-173 188-315 (321)
33 COG4671 Predicted glycosyl tra 99.5 8.6E-14 1.9E-18 108.0 11.1 137 31-173 218-366 (400)
34 PRK00726 murG undecaprenyldiph 99.5 2.4E-13 5.3E-18 108.2 11.2 135 32-173 183-325 (357)
35 TIGR03590 PseG pseudaminic aci 99.5 4.3E-13 9.2E-18 103.8 9.6 129 7-143 141-279 (279)
36 KOG3349|consensus 99.5 7E-13 1.5E-17 91.2 9.2 122 33-156 4-136 (170)
37 cd03785 GT1_MurG MurG is an N- 99.4 1.7E-12 3.6E-17 102.8 10.4 138 32-173 181-325 (350)
38 PRK13608 diacylglycerol glucos 99.3 2.6E-11 5.6E-16 98.1 13.3 131 32-173 202-339 (391)
39 PLN02605 monogalactosyldiacylg 99.3 1.1E-10 2.3E-15 94.1 12.5 134 32-172 206-347 (382)
40 PRK13609 diacylglycerol glucos 99.3 9.1E-11 2E-15 94.3 11.8 131 32-173 202-339 (380)
41 COG3980 spsG Spore coat polysa 99.2 1.9E-10 4E-15 87.2 12.1 156 9-172 132-293 (318)
42 TIGR01133 murG undecaprenyldip 99.2 5E-11 1.1E-15 94.3 9.6 77 95-173 243-322 (348)
43 TIGR03492 conserved hypothetic 99.1 7.5E-10 1.6E-14 89.7 8.5 133 32-173 205-365 (396)
44 COG5017 Uncharacterized conser 99.0 5.1E-09 1.1E-13 71.2 10.7 113 35-156 2-125 (161)
45 TIGR00215 lpxB lipid-A-disacch 98.9 2.2E-09 4.7E-14 86.8 6.2 135 32-173 191-348 (385)
46 PRK00025 lpxB lipid-A-disaccha 98.6 6.1E-08 1.3E-12 77.8 6.1 135 32-173 186-342 (380)
47 cd03814 GT1_like_2 This family 98.6 1.9E-06 4.1E-11 67.6 13.4 130 32-173 196-333 (364)
48 PLN02871 UDP-sulfoquinovose:DA 98.5 2.5E-06 5.3E-11 70.6 12.1 131 32-173 262-401 (465)
49 cd03800 GT1_Sucrose_synthase T 98.4 6.5E-06 1.4E-10 65.8 11.7 131 32-173 219-369 (398)
50 cd03786 GT1_UDP-GlcNAc_2-Epime 98.4 6E-06 1.3E-10 65.7 11.2 130 32-173 198-338 (363)
51 cd03795 GT1_like_4 This family 98.3 4.1E-06 8.8E-11 65.9 9.6 132 32-173 190-333 (357)
52 cd03804 GT1_wbaZ_like This fam 98.3 2.6E-06 5.6E-11 67.5 8.1 128 34-173 196-327 (351)
53 cd03794 GT1_wbuB_like This fam 98.3 7.7E-06 1.7E-10 64.2 10.2 134 32-173 219-366 (394)
54 cd03801 GT1_YqgM_like This fam 98.3 1.5E-05 3.2E-10 61.9 10.8 131 32-173 198-342 (374)
55 cd03798 GT1_wlbH_like This fam 98.3 3.7E-05 7.9E-10 59.9 13.0 134 32-173 201-345 (377)
56 cd03823 GT1_ExpE7_like This fa 98.2 2.8E-05 6E-10 60.7 11.7 131 32-173 190-330 (359)
57 cd03817 GT1_UGDG_like This fam 98.2 1.8E-05 3.8E-10 62.0 10.3 133 32-173 201-344 (374)
58 TIGR00236 wecB UDP-N-acetylglu 98.2 2.5E-05 5.4E-10 62.5 10.8 129 33-173 198-335 (365)
59 cd03821 GT1_Bme6_like This fam 98.1 0.0001 2.2E-09 57.7 13.1 132 32-173 202-346 (375)
60 cd05844 GT1_like_7 Glycosyltra 98.1 2.9E-05 6.4E-10 61.5 9.7 84 84-173 243-337 (367)
61 cd03808 GT1_cap1E_like This fa 98.1 0.00011 2.5E-09 56.9 12.8 132 32-173 187-330 (359)
62 cd03812 GT1_CapH_like This fam 98.1 0.00013 2.9E-09 57.4 13.3 132 32-174 191-333 (358)
63 cd03799 GT1_amsK_like This is 98.1 5.5E-05 1.2E-09 59.4 10.9 134 32-173 178-328 (355)
64 PRK15484 lipopolysaccharide 1, 98.1 0.00011 2.3E-09 59.4 12.4 85 84-173 255-345 (380)
65 PRK14089 ipid-A-disaccharide s 98.1 1.1E-05 2.4E-10 64.3 6.3 128 32-168 167-315 (347)
66 PRK05749 3-deoxy-D-manno-octul 98.0 0.00028 6.1E-09 57.7 14.5 81 87-173 303-389 (425)
67 cd04962 GT1_like_5 This family 98.0 0.00015 3.3E-09 57.5 11.9 133 32-173 196-337 (371)
68 PRK10307 putative glycosyl tra 98.0 0.00016 3.4E-09 58.8 11.6 131 32-173 228-374 (412)
69 cd03807 GT1_WbnK_like This fam 97.9 0.00021 4.6E-09 55.6 11.7 131 32-173 192-333 (365)
70 PRK15427 colanic acid biosynth 97.9 0.00012 2.6E-09 59.7 10.4 131 32-173 221-372 (406)
71 cd04951 GT1_WbdM_like This fam 97.9 5.7E-05 1.2E-09 59.4 8.1 130 32-172 187-326 (360)
72 cd03822 GT1_ecORF704_like This 97.9 0.0002 4.4E-09 56.1 11.1 134 32-173 184-335 (366)
73 PF00534 Glycos_transf_1: Glyc 97.9 7.3E-05 1.6E-09 53.1 7.3 129 32-173 14-159 (172)
74 cd03825 GT1_wcfI_like This fam 97.9 0.00041 8.9E-09 54.6 12.2 82 84-173 242-331 (365)
75 cd03820 GT1_amsD_like This fam 97.8 0.00032 6.9E-09 54.1 11.1 132 32-173 177-320 (348)
76 PRK09922 UDP-D-galactose:(gluc 97.8 0.00024 5.3E-09 56.7 10.7 133 33-174 180-326 (359)
77 TIGR03088 stp2 sugar transfera 97.8 0.00071 1.5E-08 54.0 13.2 133 32-173 193-339 (374)
78 TIGR03449 mycothiol_MshA UDP-N 97.8 0.00073 1.6E-08 54.6 13.2 83 83-173 280-369 (405)
79 cd03809 GT1_mtfB_like This fam 97.8 0.00047 1E-08 54.0 11.0 132 32-173 194-337 (365)
80 cd04950 GT1_like_1 Glycosyltra 97.8 0.00071 1.5E-08 54.4 12.2 125 33-172 205-340 (373)
81 cd03818 GT1_ExpC_like This fam 97.8 0.00052 1.1E-08 55.5 11.2 83 85-173 280-367 (396)
82 cd03819 GT1_WavL_like This fam 97.7 0.002 4.4E-08 50.6 13.9 130 32-171 184-329 (355)
83 cd04946 GT1_AmsK_like This fam 97.7 0.00085 1.8E-08 54.7 11.8 85 84-173 287-378 (407)
84 PF04007 DUF354: Protein of un 97.7 0.0018 3.9E-08 51.6 12.9 140 20-170 167-308 (335)
85 PF06722 DUF1205: Protein of u 97.6 1.6E-05 3.4E-10 51.9 0.6 73 15-89 22-97 (97)
86 TIGR02149 glgA_Coryne glycogen 97.6 0.0011 2.4E-08 53.1 11.3 131 32-173 200-353 (388)
87 cd03811 GT1_WabH_like This fam 97.6 0.0011 2.3E-08 51.2 10.8 131 32-172 188-332 (353)
88 cd03816 GT1_ALG1_like This fam 97.6 0.00042 9.1E-09 56.6 8.7 79 86-172 294-381 (415)
89 PF13692 Glyco_trans_1_4: Glyc 97.6 0.00022 4.8E-09 48.6 6.0 125 34-172 3-135 (135)
90 TIGR03568 NeuC_NnaA UDP-N-acet 97.5 0.0028 6E-08 51.1 12.5 129 32-171 201-338 (365)
91 cd03805 GT1_ALG2_like This fam 97.5 0.0025 5.5E-08 51.0 12.3 82 83-173 277-365 (392)
92 PLN02275 transferase, transfer 97.5 0.0016 3.4E-08 52.4 10.1 77 86-170 286-371 (371)
93 cd04949 GT1_gtfA_like This fam 97.4 0.0019 4.2E-08 51.5 10.4 134 32-173 203-346 (372)
94 COG1519 KdtA 3-deoxy-D-manno-o 97.4 0.0042 9.1E-08 50.4 12.0 141 22-172 219-386 (419)
95 PRK15179 Vi polysaccharide bio 97.4 0.0043 9.3E-08 54.0 12.9 132 33-171 517-658 (694)
96 TIGR02472 sucr_P_syn_N sucrose 97.4 0.0025 5.5E-08 52.4 11.1 84 84-173 315-407 (439)
97 TIGR03087 stp1 sugar transfera 97.4 0.0023 5E-08 51.8 10.5 127 34-173 225-363 (397)
98 cd03792 GT1_Trehalose_phosphor 97.4 0.0095 2.1E-07 47.7 13.8 131 32-173 189-338 (372)
99 PF13844 Glyco_transf_41: Glyc 97.3 0.0026 5.7E-08 52.6 9.7 120 31-153 283-414 (468)
100 PF02350 Epimerase_2: UDP-N-ac 97.3 0.0015 3.3E-08 52.3 8.0 134 29-172 177-318 (346)
101 cd04955 GT1_like_6 This family 97.3 0.002 4.4E-08 50.7 8.6 125 34-173 194-331 (363)
102 cd03796 GT1_PIG-A_like This fa 97.3 0.0042 9.2E-08 50.3 10.6 131 32-172 192-333 (398)
103 cd03813 GT1_like_3 This family 97.3 0.0067 1.5E-07 50.5 11.8 133 32-173 292-443 (475)
104 cd03802 GT1_AviGT4_like This f 97.1 0.004 8.8E-08 48.5 8.6 125 32-171 170-307 (335)
105 TIGR02468 sucrsPsyn_pln sucros 96.7 0.018 3.8E-07 52.2 10.4 140 22-173 469-638 (1050)
106 PHA01633 putative glycosyl tra 96.7 0.011 2.4E-07 47.1 8.0 85 83-171 198-306 (335)
107 TIGR02918 accessory Sec system 96.6 0.039 8.4E-07 46.4 11.3 131 32-172 318-467 (500)
108 TIGR02095 glgA glycogen/starch 96.6 0.02 4.4E-07 47.5 9.4 129 32-171 290-436 (473)
109 COG3914 Spy Predicted O-linked 96.5 0.022 4.8E-07 48.0 8.8 116 32-152 429-560 (620)
110 PF06258 Mito_fiss_Elm1: Mitoc 96.4 0.15 3.3E-06 40.3 12.9 123 29-153 143-281 (311)
111 PRK14098 glycogen synthase; Pr 96.4 0.04 8.7E-07 46.2 10.0 130 32-170 306-449 (489)
112 PRK09814 beta-1,6-galactofuran 96.3 0.035 7.6E-07 44.0 9.0 79 83-169 204-297 (333)
113 PRK00654 glgA glycogen synthas 96.3 0.061 1.3E-06 44.7 10.5 132 32-171 281-427 (466)
114 cd03806 GT1_ALG11_like This fa 96.2 0.061 1.3E-06 44.1 10.0 134 32-173 236-393 (419)
115 PLN02846 digalactosyldiacylgly 96.1 0.047 1E-06 45.4 8.8 123 34-172 229-363 (462)
116 cd03791 GT1_Glycogen_synthase_ 96.0 0.04 8.6E-07 45.6 8.0 134 32-171 295-441 (476)
117 TIGR02193 heptsyl_trn_I lipopo 95.9 0.091 2E-06 41.3 9.5 138 24-170 170-319 (319)
118 PRK15490 Vi polysaccharide bio 95.8 0.21 4.6E-06 42.6 11.5 116 33-155 398-523 (578)
119 PF02684 LpxB: Lipid-A-disacch 95.7 0.12 2.7E-06 41.8 9.3 135 32-173 184-341 (373)
120 PLN02501 digalactosyldiacylgly 95.6 0.053 1.1E-06 47.3 7.2 76 87-173 602-682 (794)
121 COG3660 Predicted nucleoside-d 95.6 0.67 1.5E-05 35.8 12.3 138 32-171 161-327 (329)
122 cd01635 Glycosyltransferase_GT 95.6 0.084 1.8E-06 38.2 7.6 52 83-134 158-215 (229)
123 PLN02949 transferase, transfer 95.6 0.026 5.6E-07 47.0 5.2 82 83-172 332-422 (463)
124 PRK01021 lpxB lipid-A-disaccha 95.5 0.16 3.4E-06 43.6 9.5 135 32-173 413-572 (608)
125 PRK10125 putative glycosyl tra 95.4 0.26 5.6E-06 40.3 10.4 97 53-164 258-363 (405)
126 cd03789 GT1_LPS_heptosyltransf 95.4 0.075 1.6E-06 40.9 6.9 95 32-130 121-223 (279)
127 PHA01630 putative group 1 glyc 95.0 0.62 1.4E-05 37.1 11.2 75 93-172 197-294 (331)
128 TIGR02195 heptsyl_trn_II lipop 94.6 0.29 6.3E-06 38.7 8.4 95 32-130 174-276 (334)
129 TIGR02201 heptsyl_trn_III lipo 94.5 0.63 1.4E-05 37.0 10.3 95 32-130 181-285 (344)
130 PRK10422 lipopolysaccharide co 94.5 0.48 1E-05 37.8 9.5 138 32-172 183-345 (352)
131 PRK10017 colanic acid biosynth 94.4 2.3 5E-05 35.2 13.5 143 24-172 225-392 (426)
132 PRK14099 glycogen synthase; Pr 94.1 0.7 1.5E-05 38.8 10.1 131 33-168 295-440 (485)
133 PLN00142 sucrose synthase 94.1 0.57 1.2E-05 41.8 9.7 80 84-169 640-729 (815)
134 COG0859 RfaF ADP-heptose:LPS h 94.0 0.24 5.2E-06 39.4 6.9 137 32-173 175-333 (334)
135 TIGR03713 acc_sec_asp1 accesso 93.9 0.21 4.6E-06 42.3 6.7 75 86-173 409-489 (519)
136 PF01075 Glyco_transf_9: Glyco 93.7 0.11 2.5E-06 39.1 4.3 95 32-130 105-208 (247)
137 TIGR02470 sucr_synth sucrose s 93.6 1.7 3.7E-05 38.7 11.8 128 32-170 549-707 (784)
138 PRK10964 ADP-heptose:LPS hepto 93.4 0.55 1.2E-05 37.0 7.8 131 32-171 178-321 (322)
139 cd03788 GT1_TPS Trehalose-6-Ph 93.3 1.7 3.7E-05 36.2 10.9 76 90-173 345-428 (460)
140 PRK10916 ADP-heptose:LPS hepto 93.1 0.5 1.1E-05 37.7 7.3 138 32-173 180-346 (348)
141 COG1817 Uncharacterized protei 93.0 0.66 1.4E-05 36.6 7.5 120 21-150 170-296 (346)
142 COG0381 WecB UDP-N-acetylgluco 93.0 1 2.3E-05 36.5 8.8 132 32-173 204-342 (383)
143 PF05159 Capsule_synth: Capsul 92.7 0.74 1.6E-05 35.3 7.5 97 32-131 117-225 (269)
144 KOG4626|consensus 92.4 0.9 2E-05 39.3 8.0 118 32-153 758-888 (966)
145 COG0763 LpxB Lipid A disacchar 92.2 0.24 5.3E-06 39.9 4.4 148 22-173 177-345 (381)
146 PLN02939 transferase, transfer 92.2 2.8 6.2E-05 38.1 11.3 133 33-171 779-930 (977)
147 PRK12446 undecaprenyldiphospho 92.2 2.1 4.7E-05 34.3 9.9 92 33-130 3-120 (352)
148 PLN02316 synthase/transferase 91.8 4.6 9.9E-05 37.2 12.1 134 33-172 840-998 (1036)
149 PF07429 Glyco_transf_56: 4-al 91.2 6.7 0.00015 31.6 11.8 149 18-171 168-332 (360)
150 PRK02155 ppnK NAD(+)/NADH kina 91.2 3.1 6.7E-05 32.6 9.5 72 49-131 19-94 (291)
151 TIGR00725 conserved hypothetic 90.5 3.6 7.7E-05 29.2 8.5 99 20-132 20-123 (159)
152 PF13524 Glyco_trans_1_2: Glyc 90.4 1 2.2E-05 28.3 5.2 54 111-173 9-63 (92)
153 TIGR00730 conserved hypothetic 89.5 6.4 0.00014 28.5 11.2 117 21-148 22-153 (178)
154 PRK14077 pnk inorganic polypho 88.8 5.9 0.00013 31.0 9.2 70 49-132 23-96 (287)
155 TIGR02919 accessory Sec system 88.3 1.7 3.8E-05 36.1 6.3 113 50-173 291-412 (438)
156 COG0438 RfaG Glycosyltransfera 88.2 9.2 0.0002 28.7 10.3 80 85-172 256-342 (381)
157 TIGR02400 trehalose_OtsA alpha 87.8 2.9 6.3E-05 34.9 7.4 75 90-173 340-423 (456)
158 PRK03372 ppnK inorganic polyph 87.7 7.3 0.00016 30.8 9.2 77 49-132 19-104 (306)
159 PRK01231 ppnK inorganic polyph 87.6 7.3 0.00016 30.6 9.1 97 49-172 18-118 (295)
160 PRK14075 pnk inorganic polypho 87.0 9.6 0.00021 29.3 9.3 58 49-131 11-69 (256)
161 PRK04885 ppnK inorganic polyph 86.7 2.2 4.8E-05 33.0 5.7 29 104-132 35-69 (265)
162 PRK01911 ppnK inorganic polyph 86.6 8.4 0.00018 30.2 9.0 79 49-132 14-96 (292)
163 PLN02929 NADH kinase 86.3 6.1 0.00013 31.2 8.0 97 49-172 32-137 (301)
164 PRK04539 ppnK inorganic polyph 86.1 9.6 0.00021 30.0 9.0 77 49-132 19-100 (296)
165 PRK03378 ppnK inorganic polyph 85.9 9.4 0.0002 30.0 8.9 73 49-132 19-95 (292)
166 PLN03063 alpha,alpha-trehalose 85.0 11 0.00023 34.0 9.8 72 93-172 363-443 (797)
167 PRK02649 ppnK inorganic polyph 83.7 3.3 7.2E-05 32.7 5.5 79 49-132 15-100 (305)
168 PF04464 Glyphos_transf: CDP-G 83.0 1.2 2.5E-05 35.8 2.8 111 53-171 219-335 (369)
169 TIGR00661 MJ1255 conserved hyp 82.7 6 0.00013 31.1 6.7 30 102-131 91-120 (321)
170 cd08181 PPD-like 1,3-propanedi 82.6 4.5 9.8E-05 32.5 6.0 97 21-133 15-133 (357)
171 PRK02797 4-alpha-L-fucosyltran 80.8 6 0.00013 31.4 5.9 79 86-170 206-292 (322)
172 cd03785 GT1_MurG MurG is an N- 80.1 26 0.00057 27.4 9.8 92 35-131 2-119 (350)
173 PRK03501 ppnK inorganic polyph 77.9 7.2 0.00016 30.1 5.5 29 104-132 39-72 (264)
174 cd03793 GT1_Glycogen_synthase_ 77.6 12 0.00027 32.3 7.2 74 96-172 468-552 (590)
175 cd08187 BDH Butanol dehydrogen 77.1 7.5 0.00016 31.6 5.7 95 22-132 19-136 (382)
176 cd07766 DHQ_Fe-ADH Dehydroquin 77.1 13 0.00028 29.4 7.0 94 21-133 12-113 (332)
177 TIGR02398 gluc_glyc_Psyn gluco 76.5 36 0.00079 28.8 9.7 133 32-173 284-449 (487)
178 TIGR02638 lactal_redase lactal 76.4 9.2 0.0002 31.0 6.1 96 21-133 18-139 (379)
179 PRK01185 ppnK inorganic polyph 76.3 8.3 0.00018 29.9 5.5 53 104-172 52-105 (271)
180 PRK14501 putative bifunctional 76.3 24 0.00051 31.4 9.0 77 89-173 345-429 (726)
181 PRK02231 ppnK inorganic polyph 74.4 39 0.00084 26.3 8.8 30 103-132 41-74 (272)
182 PF13344 Hydrolase_6: Haloacid 74.4 12 0.00026 24.2 5.2 52 7-66 6-57 (101)
183 PRK05579 bifunctional phosphop 74.4 42 0.00091 27.6 9.3 79 32-116 188-279 (399)
184 COG4370 Uncharacterized protei 74.0 2.9 6.3E-05 33.1 2.4 80 89-173 298-380 (412)
185 PRK03708 ppnK inorganic polyph 73.7 8.2 0.00018 30.0 4.9 71 49-132 14-88 (277)
186 PRK15454 ethanol dehydrogenase 73.7 13 0.00028 30.5 6.3 82 21-119 38-120 (395)
187 COG2099 CobK Precorrin-6x redu 72.7 26 0.00057 26.9 7.2 32 99-130 191-228 (257)
188 cd08194 Fe-ADH6 Iron-containin 72.6 14 0.00031 29.9 6.3 96 21-133 12-131 (375)
189 PRK10624 L-1,2-propanediol oxi 72.6 15 0.00032 29.9 6.4 95 21-133 19-140 (382)
190 cd08193 HVD 5-hydroxyvalerate 72.3 16 0.00034 29.6 6.4 96 21-133 15-134 (376)
191 PRK10586 putative oxidoreducta 71.1 27 0.00058 28.3 7.5 90 21-132 23-118 (362)
192 cd07035 TPP_PYR_POX_like Pyrim 71.0 31 0.00068 23.7 8.1 29 103-131 58-92 (155)
193 TIGR01133 murG undecaprenyldip 69.9 50 0.0011 25.7 9.5 91 34-129 2-118 (348)
194 PF09547 Spore_IV_A: Stage IV 69.9 30 0.00064 29.0 7.3 87 85-171 114-234 (492)
195 KOG0069|consensus 68.4 36 0.00079 27.3 7.5 99 32-167 163-268 (336)
196 PF06506 PrpR_N: Propionate ca 68.0 3.4 7.4E-05 29.7 1.6 33 101-134 31-63 (176)
197 PLN02935 Bifunctional NADH kin 68.0 16 0.00034 31.0 5.6 29 103-131 261-293 (508)
198 PF03641 Lysine_decarbox: Poss 67.6 28 0.00061 23.7 6.0 93 54-148 2-111 (133)
199 PRK14076 pnk inorganic polypho 67.4 15 0.00032 31.7 5.5 29 104-132 348-380 (569)
200 cd07039 TPP_PYR_POX Pyrimidine 67.3 42 0.0009 23.7 8.8 29 103-131 62-96 (164)
201 cd08549 G1PDH_related Glycerol 66.5 32 0.0007 27.4 7.0 95 22-134 13-114 (332)
202 cd07038 TPP_PYR_PDC_IPDC_like 66.4 43 0.00093 23.6 7.3 28 104-131 59-92 (162)
203 cd08191 HHD 6-hydroxyhexanoate 66.1 29 0.00063 28.2 6.8 96 21-133 12-130 (386)
204 PRK06270 homoserine dehydrogen 65.9 35 0.00076 27.3 7.1 58 95-152 80-149 (341)
205 PRK10834 vancomycin high tempe 65.9 17 0.00036 27.7 5.0 48 103-150 112-164 (239)
206 cd08186 Fe-ADH8 Iron-containin 65.1 20 0.00044 29.1 5.7 46 22-71 13-62 (383)
207 cd08176 LPO Lactadehyde:propan 64.9 23 0.00051 28.7 6.0 96 21-133 17-136 (377)
208 COG0391 Uncharacterized conser 64.7 72 0.0016 25.5 8.6 61 8-72 168-229 (323)
209 PLN02727 NAD kinase 63.8 63 0.0014 29.8 8.7 30 103-132 742-775 (986)
210 COG1105 FruK Fructose-1-phosph 63.4 74 0.0016 25.3 9.8 139 2-152 46-219 (310)
211 PRK00726 murG undecaprenyldiph 63.3 72 0.0016 25.1 10.2 92 35-131 4-121 (357)
212 PLN02470 acetolactate synthase 63.2 28 0.0006 30.0 6.4 93 38-131 2-109 (585)
213 PRK04761 ppnK inorganic polyph 62.4 9.8 0.00021 29.1 3.2 30 103-132 24-57 (246)
214 cd08188 Fe-ADH4 Iron-containin 62.4 31 0.00068 28.0 6.3 96 21-133 17-136 (377)
215 COG2159 Predicted metal-depend 62.1 75 0.0016 24.9 9.4 91 22-120 117-210 (293)
216 KOG0853|consensus 61.2 18 0.00039 30.6 4.7 105 50-173 328-434 (495)
217 COG0300 DltE Short-chain dehyd 60.7 11 0.00025 29.1 3.3 79 32-118 6-98 (265)
218 cd08190 HOT Hydroxyacid-oxoaci 60.0 40 0.00087 27.8 6.6 45 21-70 12-57 (414)
219 PRK14818 NADH dehydrogenase su 59.2 13 0.00029 26.7 3.2 33 35-73 73-106 (173)
220 PRK06276 acetolactate synthase 58.9 37 0.00081 29.2 6.5 29 103-131 62-96 (586)
221 TIGR00315 cdhB CO dehydrogenas 57.5 28 0.00061 24.8 4.6 48 19-72 16-63 (162)
222 PF00289 CPSase_L_chain: Carba 57.5 13 0.00028 24.6 2.7 70 50-120 11-88 (110)
223 PF02826 2-Hacid_dh_C: D-isome 56.7 2.9 6.3E-05 30.0 -0.5 65 32-114 37-101 (178)
224 cd08551 Fe-ADH iron-containing 56.1 52 0.0011 26.5 6.6 96 21-133 12-131 (370)
225 PRK14813 NADH dehydrogenase su 56.0 13 0.00028 27.2 2.7 33 35-73 70-103 (189)
226 PRK02645 ppnK inorganic polyph 55.8 15 0.00033 29.0 3.3 69 49-132 17-89 (305)
227 COG0647 NagD Predicted sugar p 55.5 97 0.0021 24.1 9.6 38 7-44 16-53 (269)
228 cd08171 GlyDH-like2 Glycerol d 54.9 48 0.001 26.5 6.2 91 22-132 13-110 (345)
229 PF04558 tRNA_synt_1c_R1: Glut 54.9 13 0.00029 26.5 2.6 32 136-172 101-132 (164)
230 PRK06932 glycerate dehydrogena 54.8 75 0.0016 25.1 7.1 62 32-116 148-209 (314)
231 PRK13057 putative lipid kinase 54.8 15 0.00032 28.5 3.2 64 51-132 13-82 (287)
232 PF00731 AIRC: AIR carboxylase 54.2 21 0.00046 25.1 3.5 86 33-136 1-90 (150)
233 PRK08410 2-hydroxyacid dehydro 53.5 1.1E+02 0.0023 24.3 7.8 61 32-114 146-206 (311)
234 PRK09423 gldA glycerol dehydro 53.4 59 0.0013 26.2 6.5 92 21-132 19-116 (366)
235 cd08185 Fe-ADH1 Iron-containin 53.4 70 0.0015 25.9 7.0 45 22-70 16-60 (380)
236 PRK07574 formate dehydrogenase 53.3 1.1E+02 0.0025 25.0 8.1 72 32-120 193-264 (385)
237 PRK11914 diacylglycerol kinase 53.3 16 0.00034 28.6 3.1 67 49-132 24-96 (306)
238 PRK08322 acetolactate synthase 53.2 48 0.001 28.2 6.2 29 103-131 62-96 (547)
239 COG1052 LdhA Lactate dehydroge 53.1 78 0.0017 25.3 7.0 102 32-168 147-252 (324)
240 PF02571 CbiJ: Precorrin-6x re 53.0 1E+02 0.0022 23.6 9.4 97 21-130 119-225 (249)
241 CHL00023 ndhK NADH dehydrogena 52.8 17 0.00038 27.3 3.0 34 11-44 77-110 (225)
242 PRK13059 putative lipid kinase 52.5 17 0.00036 28.4 3.1 67 50-132 18-90 (295)
243 cd08192 Fe-ADH7 Iron-containin 52.4 60 0.0013 26.2 6.4 44 21-69 13-57 (370)
244 smart00046 DAGKc Diacylglycero 52.3 15 0.00033 24.6 2.5 29 104-132 49-86 (124)
245 PRK09860 putative alcohol dehy 52.3 37 0.00081 27.6 5.2 80 21-116 20-100 (383)
246 cd08170 GlyDH Glycerol dehydro 51.7 78 0.0017 25.3 6.9 90 22-132 13-109 (351)
247 PF11071 DUF2872: Protein of u 51.7 53 0.0011 22.6 4.9 78 49-130 7-106 (141)
248 PRK14815 NADH dehydrogenase su 51.1 18 0.00038 26.4 2.8 34 35-74 76-110 (183)
249 TIGR00521 coaBC_dfp phosphopan 51.1 1.4E+02 0.003 24.6 9.2 78 32-115 185-276 (390)
250 PRK06487 glycerate dehydrogena 50.7 1E+02 0.0022 24.5 7.3 60 32-115 149-208 (317)
251 cd08197 DOIS 2-deoxy-scyllo-in 50.7 83 0.0018 25.4 6.9 95 21-133 12-119 (355)
252 COG3260 Ni,Fe-hydrogenase III 50.6 16 0.00035 25.3 2.4 24 50-73 61-85 (148)
253 COG0826 Collagenase and relate 50.2 1.4E+02 0.0029 24.2 13.3 127 32-169 27-159 (347)
254 PRK10537 voltage-gated potassi 50.0 1.4E+02 0.0031 24.5 8.9 105 54-165 253-367 (393)
255 cd03784 GT1_Gtf_like This fami 50.0 65 0.0014 25.9 6.3 36 33-73 2-37 (401)
256 TIGR00421 ubiX_pad polyprenyl 49.9 39 0.00084 24.5 4.4 34 119-152 107-144 (181)
257 PRK13278 purP 5-formaminoimida 49.7 1.4E+02 0.003 24.2 9.8 121 21-150 5-138 (358)
258 PRK13054 lipid kinase; Reviewe 49.6 21 0.00045 27.9 3.3 66 50-132 17-92 (300)
259 PRK10017 colanic acid biosynth 49.3 1.3E+02 0.0028 25.0 8.0 30 103-132 116-156 (426)
260 COG3967 DltE Short-chain dehyd 49.2 35 0.00077 25.7 4.1 78 33-119 6-93 (245)
261 COG4221 Short-chain alcohol de 48.8 55 0.0012 25.1 5.2 74 32-114 6-91 (246)
262 cd07037 TPP_PYR_MenD Pyrimidin 48.8 59 0.0013 23.0 5.2 29 103-131 59-93 (162)
263 PRK12367 short chain dehydroge 48.6 1.1E+02 0.0025 22.9 7.2 74 33-115 15-90 (245)
264 KOG1687|consensus 48.6 24 0.00053 24.4 3.0 33 35-73 74-107 (168)
265 cd08182 HEPD Hydroxyethylphosp 48.4 80 0.0017 25.4 6.5 42 21-70 12-54 (367)
266 PF15024 Glyco_transf_18: Glyc 48.3 1.1E+02 0.0024 26.4 7.4 86 83-173 319-431 (559)
267 PRK15424 propionate catabolism 48.0 74 0.0016 27.4 6.4 31 103-134 63-93 (538)
268 KOG4180|consensus 48.0 10 0.00022 30.2 1.3 28 103-130 104-135 (395)
269 TIGR02329 propionate_PrpR prop 47.1 80 0.0017 27.1 6.5 38 103-141 53-90 (526)
270 COG1090 Predicted nucleoside-d 47.0 59 0.0013 25.6 5.2 67 35-115 1-67 (297)
271 PRK06179 short chain dehydroge 46.9 1E+02 0.0023 23.0 6.7 70 33-115 5-84 (270)
272 PF10093 DUF2331: Uncharacteri 46.9 1.4E+02 0.0031 24.4 7.6 81 49-132 193-290 (374)
273 TIGR00173 menD 2-succinyl-5-en 46.7 1.5E+02 0.0033 24.4 8.0 28 103-130 62-95 (432)
274 PRK14816 NADH dehydrogenase su 46.5 23 0.00051 25.8 2.8 34 35-74 84-118 (182)
275 cd08175 G1PDH Glycerol-1-phosp 46.1 1.2E+02 0.0025 24.3 7.1 94 21-133 12-113 (348)
276 PF12689 Acid_PPase: Acid Phos 45.9 46 0.00099 23.9 4.2 47 122-168 119-165 (169)
277 cd01840 SGNH_hydrolase_yrhL_li 45.6 96 0.0021 21.2 6.2 47 22-72 40-87 (150)
278 PRK13982 bifunctional SbtC-lik 45.6 1.9E+02 0.0041 24.6 9.1 131 32-171 71-247 (475)
279 TIGR03609 S_layer_CsaB polysac 45.4 71 0.0015 24.7 5.7 77 49-132 14-107 (298)
280 PRK13055 putative lipid kinase 45.0 28 0.0006 27.7 3.4 78 35-132 7-93 (334)
281 PRK13337 putative lipid kinase 44.9 28 0.00061 27.2 3.3 66 50-132 18-91 (304)
282 PF06180 CbiK: Cobalt chelatas 44.8 57 0.0012 25.2 4.9 39 33-73 2-42 (262)
283 PLN02928 oxidoreductase family 44.6 1E+02 0.0023 24.7 6.6 72 32-115 160-237 (347)
284 PLN03064 alpha,alpha-trehalose 44.6 2.4E+02 0.0051 26.3 9.3 131 32-171 362-526 (934)
285 cd00758 MoCF_BD MoCF_BD: molyb 44.2 53 0.0011 22.2 4.2 9 65-73 59-67 (133)
286 TIGR02113 coaC_strep phosphopa 44.1 1.1E+02 0.0024 22.0 6.0 46 123-168 111-175 (177)
287 PF06792 UPF0261: Uncharacteri 43.9 52 0.0011 27.2 4.7 89 32-132 185-278 (403)
288 PRK05282 (alpha)-aspartyl dipe 43.5 1.4E+02 0.0031 22.6 8.8 85 21-131 22-120 (233)
289 COG0118 HisH Glutamine amidotr 43.5 63 0.0014 24.0 4.7 95 33-151 3-103 (204)
290 TIGR00715 precor6x_red precorr 43.4 1.5E+02 0.0033 22.8 8.9 53 114-166 161-220 (256)
291 PRK07525 sulfoacetaldehyde ace 43.3 1E+02 0.0022 26.6 6.7 127 39-173 1-154 (588)
292 PRK06242 flavodoxin; Provision 43.3 74 0.0016 21.6 5.0 56 9-69 47-107 (150)
293 PRK00945 acetyl-CoA decarbonyl 43.2 70 0.0015 23.1 4.8 49 19-72 23-71 (171)
294 PRK13181 hisH imidazole glycer 43.1 1.3E+02 0.0028 21.9 7.2 28 34-70 2-29 (199)
295 PRK00561 ppnK inorganic polyph 43.1 34 0.00074 26.4 3.4 30 103-132 32-65 (259)
296 PRK05579 bifunctional phosphop 43.0 1.9E+02 0.0041 23.9 10.9 131 32-171 7-182 (399)
297 COG0801 FolK 7,8-dihydro-6-hyd 42.8 71 0.0015 22.8 4.7 30 33-65 2-31 (160)
298 PF00282 Pyridoxal_deC: Pyrido 42.8 97 0.0021 25.1 6.2 68 104-172 103-191 (373)
299 PRK07092 benzoylformate decarb 42.7 48 0.001 28.1 4.6 29 103-131 72-106 (530)
300 cd08183 Fe-ADH2 Iron-containin 42.1 1.3E+02 0.0028 24.4 6.8 41 22-70 13-53 (374)
301 TIGR00147 lipid kinase, YegS/R 41.9 31 0.00068 26.7 3.2 67 49-132 17-91 (293)
302 PRK05858 hypothetical protein; 41.7 99 0.0021 26.4 6.4 119 54-174 9-154 (542)
303 PRK15469 ghrA bifunctional gly 41.6 1.8E+02 0.0038 23.1 10.1 69 32-119 137-205 (312)
304 PRK07586 hypothetical protein; 41.6 99 0.0021 26.1 6.3 121 54-174 5-151 (514)
305 PLN03139 formate dehydrogenase 41.5 2E+02 0.0043 23.7 8.0 69 32-118 200-269 (386)
306 PRK06882 acetolactate synthase 41.4 1E+02 0.0022 26.5 6.4 121 54-174 8-154 (574)
307 PRK06756 flavodoxin; Provision 41.4 85 0.0018 21.4 5.0 51 18-68 64-118 (148)
308 PRK06171 sorbitol-6-phosphate 41.3 1.5E+02 0.0032 22.1 7.6 34 32-73 9-42 (266)
309 TIGR01752 flav_long flavodoxin 41.1 1E+02 0.0023 21.6 5.6 52 18-69 59-116 (167)
310 cd08169 DHQ-like Dehydroquinat 41.1 48 0.001 26.6 4.2 97 21-133 12-118 (344)
311 PRK13152 hisH imidazole glycer 40.8 1.4E+02 0.003 21.7 6.4 28 34-70 2-29 (201)
312 PF00205 TPP_enzyme_M: Thiamin 40.8 75 0.0016 21.3 4.6 81 21-113 2-86 (137)
313 COG3199 Predicted inorganic po 40.7 55 0.0012 26.4 4.3 42 103-144 99-151 (355)
314 TIGR03646 YtoQ_fam YtoQ family 40.4 73 0.0016 22.0 4.2 79 49-130 10-109 (144)
315 PRK14092 2-amino-4-hydroxy-6-h 40.2 66 0.0014 23.0 4.3 31 32-65 7-37 (163)
316 PRK06550 fabG 3-ketoacyl-(acyl 39.8 1.4E+02 0.003 21.7 6.3 68 33-114 6-77 (235)
317 PRK15409 bifunctional glyoxyla 39.4 1.6E+02 0.0035 23.4 6.8 67 32-117 146-213 (323)
318 cd08189 Fe-ADH5 Iron-containin 39.4 1E+02 0.0022 25.0 5.8 45 21-70 15-60 (374)
319 cd03412 CbiK_N Anaerobic cobal 39.0 73 0.0016 21.5 4.3 39 32-73 1-41 (127)
320 PRK13695 putative NTPase; Prov 38.7 1.2E+02 0.0027 21.2 5.7 56 115-170 117-172 (174)
321 PRK07313 phosphopantothenoylcy 38.7 1.5E+02 0.0032 21.5 6.0 52 121-172 108-180 (182)
322 PF01513 NAD_kinase: ATP-NAD k 38.4 34 0.00074 26.6 2.9 30 103-132 75-108 (285)
323 PRK07424 bifunctional sterol d 38.3 1E+02 0.0023 25.4 5.7 73 32-115 178-256 (406)
324 TIGR00118 acolac_lg acetolacta 38.1 1.2E+02 0.0026 25.9 6.4 119 54-174 5-151 (558)
325 PRK14814 NADH dehydrogenase su 37.8 36 0.00078 24.9 2.7 35 35-75 76-111 (186)
326 PF14350 Beta_protein: Beta pr 37.8 46 0.001 26.6 3.6 46 126-171 99-147 (347)
327 PRK10669 putative cation:proto 37.6 2.6E+02 0.0057 23.9 9.8 123 33-172 419-549 (558)
328 TIGR02699 archaeo_AfpA archaeo 37.5 60 0.0013 23.5 3.8 44 117-165 108-173 (174)
329 COG2327 WcaK Polysaccharide py 37.4 1.1E+02 0.0025 25.1 5.7 65 103-171 284-349 (385)
330 PRK07524 hypothetical protein; 37.1 1.6E+02 0.0035 25.0 6.9 119 54-174 6-154 (535)
331 COG0413 PanB Ketopantoate hydr 36.7 2E+02 0.0044 22.3 7.2 72 99-172 102-197 (268)
332 PF12496 BNIP2: Bcl2-/adenovir 36.6 16 0.00034 25.0 0.6 9 106-114 115-123 (127)
333 PRK06718 precorrin-2 dehydroge 36.6 1.1E+02 0.0023 22.5 5.1 89 29-130 8-100 (202)
334 PRK07060 short chain dehydroge 36.3 76 0.0017 23.2 4.4 74 33-115 10-88 (245)
335 PRK08199 thiamine pyrophosphat 36.1 2.2E+02 0.0047 24.4 7.6 29 103-131 70-104 (557)
336 PF13241 NAD_binding_7: Putati 36.0 58 0.0013 20.9 3.3 71 31-122 7-78 (103)
337 KOG1205|consensus 35.9 1.9E+02 0.0041 22.7 6.5 77 32-116 12-103 (282)
338 TIGR02836 spore_IV_A stage IV 35.9 2E+02 0.0044 24.3 6.9 74 98-171 139-234 (492)
339 COG4394 Uncharacterized protei 35.8 2.3E+02 0.0049 22.6 8.3 43 85-130 237-282 (370)
340 PF13460 NAD_binding_10: NADH( 35.8 1.5E+02 0.0033 20.6 6.6 71 53-130 11-95 (183)
341 COG0111 SerA Phosphoglycerate 35.5 2.3E+02 0.005 22.6 7.7 101 32-168 143-249 (324)
342 COG1105 FruK Fructose-1-phosph 35.4 1.7E+02 0.0036 23.4 6.2 61 13-75 106-170 (310)
343 TIGR01957 nuoB_fam NADH-quinon 35.2 33 0.00072 24.0 2.1 34 35-74 60-94 (145)
344 PF04230 PS_pyruv_trans: Polys 34.9 1.7E+02 0.0036 21.4 6.2 30 104-133 63-108 (286)
345 cd01822 Lysophospholipase_L1_l 34.8 1.5E+02 0.0033 20.4 6.6 10 33-42 66-75 (177)
346 PRK07979 acetolactate synthase 34.1 1.6E+02 0.0034 25.4 6.4 29 103-131 66-100 (574)
347 PRK13243 glyoxylate reductase; 34.0 1.5E+02 0.0033 23.6 6.0 66 32-116 151-216 (333)
348 PRK15438 erythronate-4-phospha 33.5 2.7E+02 0.0058 22.8 7.4 61 32-114 117-177 (378)
349 PRK00002 aroB 3-dehydroquinate 33.5 2.1E+02 0.0045 23.0 6.7 97 21-134 20-128 (358)
350 TIGR01777 yfcH conserved hypot 33.3 2.1E+02 0.0045 21.5 6.8 12 103-114 56-67 (292)
351 cd08177 MAR Maleylacetate redu 33.3 1.1E+02 0.0023 24.4 5.0 31 103-134 76-111 (337)
352 PRK05920 aromatic acid decarbo 32.9 97 0.0021 23.0 4.4 33 119-151 125-161 (204)
353 TIGR00521 coaBC_dfp phosphopan 32.9 2.8E+02 0.0061 22.8 10.4 51 121-171 109-178 (390)
354 cd08550 GlyDH-like Glycerol_de 32.8 2.4E+02 0.0051 22.6 6.9 91 22-132 13-109 (349)
355 cd03146 GAT1_Peptidase_E Type 32.8 2E+02 0.0044 21.1 9.3 88 19-131 16-121 (212)
356 PRK08155 acetolactate synthase 32.7 1.6E+02 0.0035 25.2 6.3 81 51-131 14-109 (564)
357 PF04127 DFP: DNA / pantothena 32.5 2E+02 0.0043 20.9 6.0 57 51-113 30-91 (185)
358 cd01424 MGS_CPS_II Methylglyox 32.3 1.4E+02 0.0031 19.2 6.2 30 34-69 2-31 (110)
359 PRK14116 gpmA phosphoglyceromu 32.0 31 0.00067 25.8 1.6 23 104-126 175-197 (228)
360 COG1737 RpiR Transcriptional r 31.9 2.2E+02 0.0048 22.0 6.5 75 33-131 132-211 (281)
361 TIGR02482 PFKA_ATP 6-phosphofr 31.8 66 0.0014 25.4 3.5 30 103-132 90-123 (301)
362 PRK06523 short chain dehydroge 31.7 2.1E+02 0.0046 21.1 7.4 69 32-114 9-87 (260)
363 PF03033 Glyco_transf_28: Glyc 31.7 81 0.0018 20.9 3.6 36 34-74 1-36 (139)
364 PRK07449 2-succinyl-5-enolpyru 31.7 1.3E+02 0.0028 25.8 5.5 82 50-131 9-105 (568)
365 PF05693 Glycogen_syn: Glycoge 31.5 1.1E+02 0.0024 26.9 4.9 73 94-170 461-541 (633)
366 cd03818 GT1_ExpC_like This fam 31.4 2.7E+02 0.0059 22.2 9.7 25 51-75 11-35 (396)
367 cd08172 GlyDH-like1 Glycerol d 31.4 2E+02 0.0044 22.9 6.3 30 103-133 75-109 (347)
368 PRK07710 acetolactate synthase 31.3 80 0.0017 27.1 4.2 29 103-131 77-111 (571)
369 TIGR03457 sulphoacet_xsc sulfo 31.3 1E+02 0.0022 26.6 4.8 77 54-130 6-96 (579)
370 PRK13463 phosphatase PhoE; Pro 31.2 37 0.0008 24.8 1.9 24 104-127 144-167 (203)
371 cd01423 MGS_CPS_I_III Methylgl 30.9 1.5E+02 0.0034 19.3 5.0 30 34-69 2-31 (116)
372 PRK14819 NADH dehydrogenase su 30.9 53 0.0011 25.3 2.7 35 10-44 76-110 (264)
373 PF06345 Drf_DAD: DRF Autoregu 30.9 44 0.00095 13.5 1.2 12 114-125 3-14 (15)
374 cd04236 AAK_NAGS-Urea AAK_NAGS 30.6 2E+02 0.0043 22.4 5.9 52 19-73 15-76 (271)
375 PRK08264 short chain dehydroge 30.3 2.2E+02 0.0047 20.7 6.4 71 32-114 6-83 (238)
376 PRK09259 putative oxalyl-CoA d 30.2 86 0.0019 26.9 4.2 77 54-130 14-104 (569)
377 cd01972 Nitrogenase_VnfE_like 30.1 3.2E+02 0.0069 22.6 7.6 33 99-131 368-400 (426)
378 PRK06482 short chain dehydroge 29.9 1.6E+02 0.0035 22.1 5.4 74 33-115 3-87 (276)
379 PRK09444 pntB pyridine nucleot 29.8 2.1E+02 0.0045 24.2 6.1 106 17-132 293-411 (462)
380 cd00885 cinA Competence-damage 29.8 1.3E+02 0.0029 21.4 4.6 85 34-133 2-94 (170)
381 PRK00861 putative lipid kinase 29.8 62 0.0014 25.1 3.1 30 103-132 56-89 (300)
382 PRK06112 acetolactate synthase 29.3 1.9E+02 0.0042 24.9 6.2 80 22-113 205-293 (578)
383 TIGR00520 asnASE_II L-asparagi 29.3 2.5E+02 0.0054 22.7 6.5 48 20-72 251-299 (349)
384 PRK14119 gpmA phosphoglyceromu 29.2 40 0.00087 25.1 1.9 23 104-126 175-197 (228)
385 COG1927 Mtd Coenzyme F420-depe 29.2 1.6E+02 0.0034 22.2 4.8 54 6-70 61-115 (277)
386 PRK08527 acetolactate synthase 29.1 1.3E+02 0.0028 25.8 5.1 29 103-131 65-99 (563)
387 cd01828 sialate_O-acetylestera 29.1 1.9E+02 0.0042 19.8 6.1 51 21-72 39-95 (169)
388 PF11248 DUF3046: Protein of u 29.0 33 0.00071 20.4 1.1 23 105-127 24-46 (63)
389 PRK02399 hypothetical protein; 29.0 1.6E+02 0.0034 24.5 5.2 88 32-131 186-278 (406)
390 PRK08327 acetolactate synthase 28.9 2.7E+02 0.0059 24.0 7.0 45 22-72 212-256 (569)
391 cd01451 vWA_Magnesium_chelatas 28.7 2.1E+02 0.0046 20.1 5.8 47 121-167 129-177 (178)
392 PF13727 CoA_binding_3: CoA-bi 28.6 1.7E+02 0.0036 20.0 5.0 44 20-69 130-173 (175)
393 TIGR03848 MSMEG_4193 probable 28.6 54 0.0012 23.8 2.4 23 106-128 147-169 (204)
394 PRK12361 hypothetical protein; 28.5 66 0.0014 27.6 3.2 30 103-132 296-329 (547)
395 PRK07092 benzoylformate decarb 28.2 2.1E+02 0.0046 24.3 6.2 79 23-113 199-281 (530)
396 TIGR03254 oxalate_oxc oxalyl-C 28.0 1.3E+02 0.0027 25.8 4.8 29 103-131 64-98 (554)
397 COG0379 NadA Quinolinate synth 27.9 2.5E+02 0.0054 22.5 6.0 76 85-165 121-204 (324)
398 TIGR03162 ribazole_cobC alpha- 27.5 44 0.00095 23.5 1.8 23 104-126 138-160 (177)
399 TIGR01859 fruc_bis_ald_ fructo 27.5 2.1E+02 0.0046 22.3 5.7 74 49-130 25-103 (282)
400 smart00870 Asparaginase Aspara 27.4 2.8E+02 0.006 22.1 6.4 45 23-72 228-272 (323)
401 PF12694 MoCo_carrier: Putativ 27.3 2.2E+02 0.0049 19.9 6.1 49 103-151 64-119 (145)
402 TIGR01357 aroB 3-dehydroquinat 27.2 2.7E+02 0.0059 22.1 6.4 97 22-133 12-116 (344)
403 PRK08462 biotin carboxylase; V 27.2 3.6E+02 0.0077 22.3 10.7 95 53-150 16-132 (445)
404 TIGR01162 purE phosphoribosyla 27.1 1.2E+02 0.0025 21.6 3.7 17 50-66 11-27 (156)
405 PRK06935 2-deoxy-D-gluconate 3 27.1 1.1E+02 0.0023 22.8 3.9 34 32-73 15-48 (258)
406 COG3195 Uncharacterized protei 27.0 1.7E+02 0.0036 21.1 4.4 57 116-173 89-147 (176)
407 PRK06349 homoserine dehydrogen 27.0 3.7E+02 0.0079 22.3 7.4 58 95-152 63-128 (426)
408 PRK14118 gpmA phosphoglyceromu 27.0 45 0.00097 24.9 1.8 23 105-127 175-197 (227)
409 PRK06965 acetolactate synthase 27.0 2.7E+02 0.006 24.0 6.8 80 22-113 213-296 (587)
410 TIGR01755 flav_wrbA NAD(P)H:qu 27.0 2.1E+02 0.0046 20.7 5.3 58 7-66 70-138 (197)
411 cd04939 PA2301 PA2301 is an un 26.9 11 0.00024 26.2 -1.4 49 9-57 84-134 (139)
412 KOG3135|consensus 26.8 2.5E+02 0.0055 20.4 6.0 50 15-67 80-140 (203)
413 COG0028 IlvB Thiamine pyrophos 26.7 2.3E+02 0.005 24.5 6.1 80 22-113 192-275 (550)
414 TIGR02257 cobalto_cobN cobalto 26.6 3E+02 0.0065 26.3 7.1 95 2-114 736-846 (1122)
415 TIGR02418 acolac_catab acetola 26.6 1.2E+02 0.0026 25.8 4.5 77 54-130 3-93 (539)
416 PRK06457 pyruvate dehydrogenas 26.5 1.3E+02 0.0028 25.8 4.6 29 103-131 63-97 (549)
417 TIGR01470 cysG_Nterm siroheme 26.5 2.1E+02 0.0046 21.0 5.3 89 29-130 7-100 (205)
418 PRK06411 NADH dehydrogenase su 26.4 74 0.0016 23.2 2.7 34 35-74 77-111 (183)
419 PRK08978 acetolactate synthase 26.4 1.3E+02 0.0029 25.6 4.7 77 54-130 5-95 (548)
420 PF02775 TPP_enzyme_C: Thiamin 26.4 1.6E+02 0.0035 20.1 4.5 69 103-172 74-145 (153)
421 TIGR03254 oxalate_oxc oxalyl-C 26.2 1.7E+02 0.0037 25.0 5.4 44 23-72 199-242 (554)
422 PF01488 Shikimate_DH: Shikima 26.1 45 0.00098 22.6 1.5 72 32-115 13-86 (135)
423 PRK12321 cobN cobaltochelatase 26.1 3.2E+02 0.007 26.0 7.2 95 2-114 722-832 (1100)
424 PLN00011 cysteine synthase 25.9 3.3E+02 0.0072 21.5 8.2 51 105-156 69-124 (323)
425 cd00763 Bacterial_PFK Phosphof 25.9 96 0.0021 24.7 3.5 31 102-132 90-123 (317)
426 PRK14817 NADH dehydrogenase su 25.9 76 0.0016 23.1 2.7 34 35-74 78-112 (181)
427 PRK03202 6-phosphofructokinase 25.9 96 0.0021 24.7 3.5 30 103-132 92-124 (320)
428 PF08030 NAD_binding_6: Ferric 25.8 52 0.0011 22.5 1.8 40 33-75 3-47 (156)
429 PRK06725 acetolactate synthase 25.7 1.2E+02 0.0027 26.1 4.4 29 103-131 76-110 (570)
430 PRK07418 acetolactate synthase 25.7 2.9E+02 0.0064 24.0 6.7 79 23-113 217-299 (616)
431 PRK06725 acetolactate synthase 25.7 2.6E+02 0.0057 24.1 6.4 80 22-113 206-289 (570)
432 PLN02958 diacylglycerol kinase 25.6 4.2E+02 0.009 22.5 9.0 30 103-132 167-207 (481)
433 PRK14117 gpmA phosphoglyceromu 25.4 50 0.0011 24.7 1.8 22 105-126 176-197 (230)
434 TIGR02483 PFK_mixed phosphofru 25.4 1E+02 0.0022 24.7 3.5 30 103-132 93-125 (324)
435 TIGR03393 indolpyr_decarb indo 25.3 4.3E+02 0.0093 22.5 7.6 79 23-113 198-281 (539)
436 COG1454 EutG Alcohol dehydroge 25.2 2.4E+02 0.0053 23.1 5.7 84 20-120 17-101 (377)
437 COG1486 CelF Alpha-galactosida 25.2 2.2E+02 0.0048 23.9 5.5 72 33-112 5-85 (442)
438 cd01147 HemV-2 Metal binding p 25.2 1.8E+02 0.004 21.6 4.9 38 95-133 66-107 (262)
439 COG1611 Predicted Rossmann fol 25.2 2.9E+02 0.0062 20.5 6.6 18 103-120 109-127 (205)
440 COG4029 Uncharacterized protei 24.9 2.3E+02 0.005 19.3 5.4 54 10-66 9-64 (142)
441 PLN02832 glutamine amidotransf 24.9 3.2E+02 0.007 21.0 6.6 20 53-72 13-32 (248)
442 TIGR01921 DAP-DH diaminopimela 24.9 3.7E+02 0.0079 21.6 7.6 102 33-151 5-117 (324)
443 PRK11761 cysM cysteine synthas 24.8 3.4E+02 0.0073 21.2 6.8 38 117-155 79-117 (296)
444 PRK13142 hisH imidazole glycer 24.7 2.9E+02 0.0062 20.3 6.6 19 53-71 12-30 (192)
445 PRK10117 trehalose-6-phosphate 24.7 3.4E+02 0.0073 23.1 6.6 73 93-173 339-420 (474)
446 cd07186 CofD_like LPPG:FO 2-ph 24.6 1.6E+02 0.0036 23.3 4.5 50 19-72 174-223 (303)
447 cd08199 EEVS 2-epi-5-epi-valio 24.5 1.3E+02 0.0029 24.2 4.2 27 106-133 90-123 (354)
448 cd01829 SGNH_hydrolase_peri2 S 24.5 2.6E+02 0.0056 19.7 7.0 52 21-72 49-116 (200)
449 PRK13478 phosphonoacetaldehyde 24.1 3.2E+02 0.0069 20.6 9.1 59 106-168 178-256 (267)
450 COG0707 MurG UDP-N-acetylgluco 24.1 3.9E+02 0.0085 21.6 9.5 94 34-132 3-122 (357)
451 PF01372 Melittin: Melittin; 24.0 9.4 0.0002 18.0 -1.5 17 113-129 1-17 (26)
452 TIGR01737 FGAM_synth_I phospho 24.0 3.1E+02 0.0067 20.4 8.4 16 117-132 71-86 (227)
453 PTZ00122 phosphoglycerate muta 23.9 69 0.0015 25.2 2.4 23 105-127 234-256 (299)
454 TIGR00045 glycerate kinase. Th 23.9 1.1E+02 0.0023 25.1 3.5 55 93-151 274-340 (375)
455 cd01141 TroA_d Periplasmic bin 23.7 2.3E+02 0.005 19.9 5.0 36 96-132 62-100 (186)
456 COG0771 MurD UDP-N-acetylmuram 23.7 4.5E+02 0.0097 22.2 7.3 85 32-129 8-98 (448)
457 PRK06395 phosphoribosylamine-- 23.7 4.3E+02 0.0093 22.0 7.7 95 53-150 14-120 (435)
458 PRK03767 NAD(P)H:quinone oxido 23.6 2.9E+02 0.0063 20.0 6.1 13 18-30 83-95 (200)
459 PRK15004 alpha-ribazole phosph 23.5 56 0.0012 23.6 1.7 24 104-127 142-165 (199)
460 TIGR03702 lip_kinase_YegS lipi 23.3 93 0.002 24.1 3.0 30 103-132 51-88 (293)
461 PRK08220 2,3-dihydroxybenzoate 23.3 3E+02 0.0066 20.1 7.1 70 32-115 8-87 (252)
462 PRK12936 3-ketoacyl-(acyl-carr 23.2 2.9E+02 0.0062 20.0 5.6 75 32-115 6-91 (245)
463 PRK08591 acetyl-CoA carboxylas 23.2 4.3E+02 0.0093 21.8 9.2 96 53-149 14-129 (451)
464 COG1618 Predicted nucleotide k 23.2 3E+02 0.0065 20.0 5.3 56 116-173 122-178 (179)
465 PRK12493 magnesium chelatase s 23.0 3E+02 0.0064 26.8 6.5 94 2-114 910-1019(1310)
466 TIGR01139 cysK cysteine syntha 23.0 3.6E+02 0.0078 20.8 6.7 38 118-156 74-112 (298)
467 TIGR01761 thiaz-red thiazoliny 22.7 4.1E+02 0.0089 21.4 7.3 75 92-166 52-134 (343)
468 PRK00257 erythronate-4-phospha 22.7 4.3E+02 0.0094 21.7 7.4 62 32-115 117-178 (381)
469 PRK06048 acetolactate synthase 22.7 1.8E+02 0.0038 25.0 4.8 77 54-130 12-102 (561)
470 TIGR00732 dprA DNA protecting 22.7 3.3E+02 0.0072 20.3 10.6 46 114-164 171-218 (220)
471 COG3245 CycB Cytochrome c5 [En 22.6 69 0.0015 21.6 1.8 50 121-171 60-123 (126)
472 PRK13525 glutamine amidotransf 22.5 1.7E+02 0.0037 21.1 4.1 35 103-138 37-85 (189)
473 PRK08199 thiamine pyrophosphat 22.4 3.2E+02 0.0069 23.4 6.3 79 23-113 197-279 (557)
474 COG1111 MPH1 ERCC4-like helica 22.4 5.1E+02 0.011 22.4 7.6 52 20-71 379-432 (542)
475 cd00886 MogA_MoaB MogA_MoaB fa 22.4 1.5E+02 0.0032 20.5 3.6 12 104-115 61-72 (152)
476 PRK00942 acetylglutamate kinas 22.4 3E+02 0.0066 21.2 5.7 50 24-73 15-64 (283)
477 PF12894 Apc4_WD40: Anaphase-p 22.3 62 0.0013 17.8 1.3 21 82-102 8-28 (47)
478 PRK06154 hypothetical protein; 22.3 3.5E+02 0.0077 23.3 6.5 46 22-73 206-251 (565)
479 PRK01112 phosphoglyceromutase; 22.3 61 0.0013 24.3 1.7 24 104-127 174-197 (228)
480 PF02878 PGM_PMM_I: Phosphoglu 22.1 2.6E+02 0.0056 18.8 5.6 47 21-71 28-75 (137)
481 PRK03482 phosphoglycerate muta 22.1 68 0.0015 23.5 2.0 23 105-127 144-166 (215)
482 TIGR01274 ACC_deam 1-aminocycl 21.8 4.1E+02 0.0089 21.1 8.0 52 104-155 65-130 (337)
483 TIGR01212 radical SAM protein, 21.8 3.8E+02 0.0083 21.0 6.2 43 20-65 63-108 (302)
484 PF02481 DNA_processg_A: DNA r 21.8 1.2E+02 0.0025 22.6 3.1 40 112-152 169-210 (212)
485 PLN02573 pyruvate decarboxylas 21.8 5.3E+02 0.011 22.3 7.7 79 22-112 216-299 (578)
486 PF07128 DUF1380: Protein of u 21.7 59 0.0013 22.6 1.4 68 104-171 63-138 (139)
487 PRK13840 sucrose phosphorylase 21.6 1.1E+02 0.0023 26.1 3.2 46 122-167 370-415 (495)
488 TIGR00519 asnASE_I L-asparagin 21.4 3.9E+02 0.0084 21.4 6.2 47 21-72 226-272 (336)
489 PRK06732 phosphopantothenate-- 21.4 3.6E+02 0.0077 20.2 7.2 71 33-116 16-93 (229)
490 PLN03241 magnesium chelatase s 21.4 3.3E+02 0.0072 26.6 6.5 93 2-113 940-1049(1353)
491 PRK07979 acetolactate synthase 21.4 4E+02 0.0086 22.9 6.7 79 23-113 199-281 (574)
492 PF04763 DUF562: Protein of un 21.3 2.9E+02 0.0064 19.2 5.0 98 31-130 15-124 (146)
493 cd04241 AAK_FomA-like AAK_FomA 21.3 2E+02 0.0043 21.7 4.4 25 49-73 21-46 (252)
494 PRK05989 cobN cobaltochelatase 21.3 4.4E+02 0.0094 25.6 7.2 95 2-114 842-952 (1244)
495 PRK14021 bifunctional shikimat 21.3 5.2E+02 0.011 22.3 7.3 28 104-132 269-303 (542)
496 PRK03958 tRNA 2'-O-methylase; 21.3 3.3E+02 0.0072 19.8 7.1 70 18-116 65-134 (176)
497 PF02593 dTMP_synthase: Thymid 21.2 3.7E+02 0.0079 20.2 5.9 51 103-153 50-109 (217)
498 PLN02618 tryptophan synthase, 21.1 3.3E+02 0.0072 22.6 5.9 40 114-153 133-175 (410)
499 PRK13405 bchH magnesium chelat 21.1 3.2E+02 0.0069 26.3 6.3 93 3-114 810-918 (1209)
500 TIGR01504 glyox_carbo_lig glyo 21.1 2.9E+02 0.0062 24.0 5.8 78 23-112 195-277 (588)
No 1
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=244.11 Aligned_cols=165 Identities=29% Similarity=0.512 Sum_probs=147.1
Q ss_pred ccCccccCCcccc------CChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc
Q psy16939 5 LNRAVKLCSMCFI------DGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV 78 (174)
Q Consensus 5 ~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~ 78 (174)
++.++..+|++.. ++++++.+|++..++++||||+||...+..++.+.++.+++++++.+++|||..++...+.
T Consensus 263 ~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~ 342 (507)
T PHA03392 263 VPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAI 342 (507)
T ss_pred CCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcc
Confidence 3456666677532 4688999999987778999999998765457899999999999999999999998654331
Q ss_pred ccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCC
Q psy16939 79 LNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLT 158 (174)
Q Consensus 79 ~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~ 158 (174)
..|+|+++.+|+||.++|+|+++++||||||.||++||+++|||+|++|.++||+.||++++++|+|+.++..+++
T Consensus 343 ----~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t 418 (507)
T PHA03392 343 ----NLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVS 418 (507)
T ss_pred ----cCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHhhcCC
Q psy16939 159 KQSFLKNAQTMLNDP 173 (174)
Q Consensus 159 ~~~l~~al~~ll~~~ 173 (174)
.++|.++++++++|+
T Consensus 419 ~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 419 AAQLVLAIVDVIENP 433 (507)
T ss_pred HHHHHHHHHHHhCCH
Confidence 999999999999875
No 2
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.5e-35 Score=243.96 Aligned_cols=149 Identities=40% Similarity=0.690 Sum_probs=128.3
Q ss_pred CChHHHHHHHhcC-CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCc
Q psy16939 18 DGLSDLQQRADAA-KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 96 (174)
Q Consensus 18 ~~~~~~~~~~~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~ 96 (174)
++++++..|++.. ++++|||||||... .++.+..+++++++++.+++|||.+.+.... .+++|+++.+|+||
T Consensus 261 ~l~~~~~~~~~~~~~~~vv~vsfGs~~~--~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~-----~l~~n~~~~~W~PQ 333 (500)
T PF00201_consen 261 PLPEELWNFLDSSGKKGVVYVSFGSIVS--SMPEEKLKEIAEAFENLPQRFIWKYEGEPPE-----NLPKNVLIVKWLPQ 333 (500)
T ss_dssp TCHHHHHHHTSTTTTTEEEEEE-TSSST--T-HHHHHHHHHHHHHCSTTEEEEEETCSHGC-----HHHTTEEEESS--H
T ss_pred ccccccchhhhccCCCCEEEEecCcccc--hhHHHHHHHHHHHHhhCCCcccccccccccc-----cccceEEEeccccc
Confidence 6889999999984 47999999999975 3577779999999999999999999874433 56789999999999
Q ss_pred hhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 97 TDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 97 ~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.++|+||++++||||||+||+.||+++|||+|++|+++||+.||.++++.|+|+.++.++++.+++.++++++|+|+
T Consensus 334 ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 334 NDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp HHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred hhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=99.98 E-value=1e-31 Score=219.56 Aligned_cols=150 Identities=22% Similarity=0.385 Sum_probs=129.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-C--------Ccc-ccccCCCCCEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-N--------DPV-LNAKTLPDNVF 89 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~--------~~~-~~~~~~~~nv~ 89 (174)
+++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||++++. . +++ |.++.....+.
T Consensus 266 ~~~~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~v 342 (472)
T PLN02670 266 VRIKEWLDKQRVNSVVYVALGTEAS---LRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMI 342 (472)
T ss_pred HHHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeE
Confidence 46889999987 8999999999975 799999999999999999999999752 1 111 11111223377
Q ss_pred EeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC----CCCHHHHHHH
Q psy16939 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ----TLTKQSFLKN 165 (174)
Q Consensus 90 ~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~----~~~~~~l~~a 165 (174)
+.+|+||.++|.|+++.+||||||+||++|++++|||+|++|+++||+.||+++++.|+|+.+... .++.++++++
T Consensus 343 v~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~a 422 (472)
T PLN02670 343 HVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAES 422 (472)
T ss_pred EeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999998643 3789999999
Q ss_pred HHHhhcCC
Q psy16939 166 AQTMLNDP 173 (174)
Q Consensus 166 l~~ll~~~ 173 (174)
++++|.++
T Consensus 423 v~~vm~~~ 430 (472)
T PLN02670 423 VRLAMVDD 430 (472)
T ss_pred HHHHhcCc
Confidence 99999764
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.98 E-value=2.1e-31 Score=217.21 Aligned_cols=147 Identities=20% Similarity=0.359 Sum_probs=130.9
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC---------Ccc-ccccCCCCCEEE
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN---------DPV-LNAKTLPDNVFI 90 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~---------~~~-~~~~~~~~nv~~ 90 (174)
++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++... +++ |.+ ..++|..+
T Consensus 253 ~~~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~e-r~~~~g~v 328 (451)
T PLN02410 253 SCIEWLNKQKKNSVIFVSLGSLAL---MEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSK-IISGRGYI 328 (451)
T ss_pred HHHHHHHhCCCCcEEEEEcccccc---CCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHH-hccCCeEE
Confidence 4679999987 8999999999986 7899999999999999999999997421 232 322 35678899
Q ss_pred eecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHc-CceeEecCCCCCHHHHHHHHHHh
Q psy16939 91 QKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR-GYALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 91 ~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~-G~g~~l~~~~~~~~~l~~al~~l 169 (174)
.+|+||.++|.|+++++||||||+||+.|++++|||+|++|+++||+.||+++++. |+|+.+. ..++.++|.++++++
T Consensus 329 ~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~l 407 (451)
T PLN02410 329 VKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRL 407 (451)
T ss_pred EccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 9999996 678999999999999
Q ss_pred hcCC
Q psy16939 170 LNDP 173 (174)
Q Consensus 170 l~~~ 173 (174)
|.++
T Consensus 408 m~~~ 411 (451)
T PLN02410 408 MVEE 411 (451)
T ss_pred HcCC
Confidence 9775
No 5
>PLN03004 UDP-glycosyltransferase
Probab=99.97 E-value=2.2e-31 Score=216.65 Aligned_cols=150 Identities=21% Similarity=0.355 Sum_probs=130.8
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC------------Cc-cccccCCCC
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN------------DP-VLNAKTLPD 86 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~------------~~-~~~~~~~~~ 86 (174)
.++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++... ++ .|.++....
T Consensus 258 ~~c~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~ 334 (451)
T PLN03004 258 VSCLNWLDSQPEKSVVFLCFGSLGL---FSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDK 334 (451)
T ss_pred hHHHHHHHhCCCCceEEEEeccccc---CCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCC
Confidence 35889999987 8999999999965 7999999999999999999999998531 11 122223347
Q ss_pred CEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecCC---CCCHHHH
Q psy16939 87 NVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPIQ---TLTKQSF 162 (174)
Q Consensus 87 nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~~---~~~~~~l 162 (174)
|+.+.+|+||.++|.|+++.+||||||+||+.|++++|||+|++|+++||+.||+++++ .|+|+.++.+ ..+.++|
T Consensus 335 g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l 414 (451)
T PLN03004 335 GMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEV 414 (451)
T ss_pred cEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999985 7999999743 4699999
Q ss_pred HHHHHHhhcCC
Q psy16939 163 LKNAQTMLNDP 173 (174)
Q Consensus 163 ~~al~~ll~~~ 173 (174)
.++++++|+++
T Consensus 415 ~~av~~vm~~~ 425 (451)
T PLN03004 415 EKRVQEIIGEC 425 (451)
T ss_pred HHHHHHHhcCH
Confidence 99999999764
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.97 E-value=5.1e-31 Score=215.74 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=135.4
Q ss_pred cccCCccccC-----ChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-------
Q psy16939 9 VKLCSMCFID-----GLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN------- 75 (174)
Q Consensus 9 ~~~~g~~~~~-----~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~------- 75 (174)
+..+||.... .++++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||++++..
T Consensus 234 v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~ 310 (481)
T PLN02992 234 VYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGS---LSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSA 310 (481)
T ss_pred eEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccc
Confidence 4446776432 2346899999987 8999999999965 8999999999999999999999996310
Q ss_pred ----------------Ccc-ccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHH
Q psy16939 76 ----------------DPV-LNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYR 138 (174)
Q Consensus 76 ----------------~~~-~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~ 138 (174)
+++ |.++....++.+.+|+||.++|.|+++.+||||||+||+.|++++|||+|++|+++||+.
T Consensus 311 ~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 390 (481)
T PLN02992 311 YFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNM 390 (481)
T ss_pred cccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHH
Confidence 111 111122346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HcCceeEecCC--CCCHHHHHHHHHHhhcCC
Q psy16939 139 NMVLLR-HRGYALIEPIQ--TLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 139 na~~l~-~~G~g~~l~~~--~~~~~~l~~al~~ll~~~ 173 (174)
||++++ ++|+|+.++.. .++.++|.++++++|.++
T Consensus 391 na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 391 NAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 999995 89999999753 489999999999999764
No 7
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.97 E-value=2.4e-31 Score=218.87 Aligned_cols=148 Identities=23% Similarity=0.395 Sum_probs=128.0
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-----------------Ccc-cc
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-----------------DPV-LN 80 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-----------------~~~-~~ 80 (174)
++++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||++++.. +++ +.
T Consensus 261 ~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 337 (481)
T PLN02554 261 QSEILRWLDEQPPKSVVFLCFGSMGG---FSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFL 337 (481)
T ss_pred chHHHHHHhcCCCCcEEEEecccccc---CCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHH
Confidence 457999999987 7899999999855 7899999999999999999999987521 121 11
Q ss_pred ccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHH-HHHHcCceeEecC-----
Q psy16939 81 AKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV-LLRHRGYALIEPI----- 154 (174)
Q Consensus 81 ~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~-~l~~~G~g~~l~~----- 154 (174)
+ ..++|..+.+|+||.++|.|+++++||||||+||+.|++++|||||++|+++||+.||+ +++++|+|+.+..
T Consensus 338 ~-r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~ 416 (481)
T PLN02554 338 D-RTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGD 416 (481)
T ss_pred H-HhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccccc
Confidence 1 14567888999999999999999999999999999999999999999999999999995 5788999999853
Q ss_pred ------CCCCHHHHHHHHHHhhc
Q psy16939 155 ------QTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 155 ------~~~~~~~l~~al~~ll~ 171 (174)
..++.+++.++++++|.
T Consensus 417 ~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 417 LLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccCeEcHHHHHHHHHHHhc
Confidence 35799999999999996
No 8
>PLN02208 glycosyltransferase family protein
Probab=99.97 E-value=8.5e-31 Score=213.16 Aligned_cols=152 Identities=17% Similarity=0.247 Sum_probs=128.8
Q ss_pred ChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC--------CCcc-ccccCCCCCE
Q psy16939 19 GLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT--------NDPV-LNAKTLPDNV 88 (174)
Q Consensus 19 ~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~--------~~~~-~~~~~~~~nv 88 (174)
+++++.+|++..+ +++|||||||... ++.+.+.+++.+++..+.+|+|..+.. .+++ |.++....|+
T Consensus 237 ~~~~~~~wLd~~~~~sVvyvSfGS~~~---l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~ 313 (442)
T PLN02208 237 LEEQWSHFLSGFPPKSVVFCSLGSQII---LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGV 313 (442)
T ss_pred CHHHHHHHHhcCCCCcEEEEecccccc---CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCc
Confidence 4678999999987 8999999999985 788889999888877777777776632 1121 2111223688
Q ss_pred EEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecCCC---CCHHHHHH
Q psy16939 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPIQT---LTKQSFLK 164 (174)
Q Consensus 89 ~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~~~---~~~~~l~~ 164 (174)
.+.+|+||.++|.|+++.+||||||+||++|++++|||+|++|+++||+.||+++++ +|+|+.++.++ ++.++|.+
T Consensus 314 ~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ 393 (442)
T PLN02208 314 VWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSN 393 (442)
T ss_pred EeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998876 89999997554 89999999
Q ss_pred HHHHhhcCC
Q psy16939 165 NAQTMLNDP 173 (174)
Q Consensus 165 al~~ll~~~ 173 (174)
+++++|+++
T Consensus 394 ai~~~m~~~ 402 (442)
T PLN02208 394 AIKSVMDKD 402 (442)
T ss_pred HHHHHhcCC
Confidence 999999764
No 9
>PLN02207 UDP-glycosyltransferase
Probab=99.97 E-value=7.7e-31 Score=214.19 Aligned_cols=147 Identities=21% Similarity=0.373 Sum_probs=128.4
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC------Ccc-ccccCCCCCEEEee
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN------DPV-LNAKTLPDNVFIQK 92 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~------~~~-~~~~~~~~nv~~~~ 92 (174)
+++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++... +++ +.+ ..++|..+.+
T Consensus 263 ~~~~~WLd~~~~~sVVyvSfGS~~~---~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~e-r~~~~g~i~~ 338 (468)
T PLN02207 263 DELMKWLDDQPEASVVFLCFGSMGR---LRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLD-RVSGRGMICG 338 (468)
T ss_pred hHHHHHHhcCCCCcEEEEEeccCcC---CCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHh-hcCCCeEEEE
Confidence 57999999987 7999999999875 7899999999999999999999998522 121 222 2567889999
Q ss_pred cCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEec------C-CCCCHHHHHH
Q psy16939 93 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEP------I-QTLTKQSFLK 164 (174)
Q Consensus 93 ~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~------~-~~~~~~~l~~ 164 (174)
|+||.++|.|+++.+||||||+||+.|++++|||||++|+++||+.||+++++ +|+|+.+. . +..+.++|.+
T Consensus 339 W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~ 418 (468)
T PLN02207 339 WSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIET 418 (468)
T ss_pred eCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877 89999763 1 2348999999
Q ss_pred HHHHhhc
Q psy16939 165 NAQTMLN 171 (174)
Q Consensus 165 al~~ll~ 171 (174)
+|+++|.
T Consensus 419 av~~vm~ 425 (468)
T PLN02207 419 AIRCVMN 425 (468)
T ss_pred HHHHHHh
Confidence 9999996
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.97 E-value=1.3e-30 Score=212.36 Aligned_cols=149 Identities=25% Similarity=0.403 Sum_probs=127.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC----------------CccccccC
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN----------------DPVLNAKT 83 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~----------------~~~~~~~~ 83 (174)
.++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||++++.. .+.+.+ .
T Consensus 249 ~~~~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e-~ 324 (455)
T PLN02152 249 SSYTLWLDSKTESSVIYVSFGTMVE---LSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRH-E 324 (455)
T ss_pred hHHHHHhhCCCCCceEEEEeccccc---CCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHH-h
Confidence 36999999987 8999999999985 7999999999999999999999987521 011211 2
Q ss_pred CCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEec--CC-CCCH
Q psy16939 84 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEP--IQ-TLTK 159 (174)
Q Consensus 84 ~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~--~~-~~~~ 159 (174)
.++|..+.+|+||.++|.|+++.+||||||+||++|++++|||++++|+++||+.||+++++ .|+|+.+. .+ ..+.
T Consensus 325 ~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~ 404 (455)
T PLN02152 325 LEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVER 404 (455)
T ss_pred ccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcH
Confidence 56788999999999999999999999999999999999999999999999999999999998 36666553 33 3589
Q ss_pred HHHHHHHHHhhcCC
Q psy16939 160 QSFLKNAQTMLNDP 173 (174)
Q Consensus 160 ~~l~~al~~ll~~~ 173 (174)
++|+++++++|+++
T Consensus 405 e~l~~av~~vm~~~ 418 (455)
T PLN02152 405 GEIRRCLEAVMEEK 418 (455)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999754
No 11
>PLN02555 limonoid glucosyltransferase
Probab=99.97 E-value=2.1e-30 Score=212.35 Aligned_cols=150 Identities=28% Similarity=0.366 Sum_probs=130.7
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC---------CCcc-ccccCCCCCE
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT---------NDPV-LNAKTLPDNV 88 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~---------~~~~-~~~~~~~~nv 88 (174)
++++.+|++..+ +++|||||||... ++.+.+.+++.+++..+++|||+++.. .+++ +.+ ..++|.
T Consensus 264 ~~~~~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~~~~g 339 (480)
T PLN02555 264 ADDCIEWLDSKPPSSVVYISFGTVVY---LKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KAGDKG 339 (480)
T ss_pred chhHHHHHhCCCCCceeEEEeccccC---CCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hcCCce
Confidence 356899999987 7899999999875 789999999999999999999998631 1221 222 345788
Q ss_pred EEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHc-CceeEec-----CCCCCHHHH
Q psy16939 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR-GYALIEP-----IQTLTKQSF 162 (174)
Q Consensus 89 ~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~-G~g~~l~-----~~~~~~~~l 162 (174)
.+.+|+||.++|.|+++++||||||+||+.||+++|+|||++|+++||+.||+++++. |+|+.+. ...++.+++
T Consensus 340 ~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v 419 (480)
T PLN02555 340 KIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEV 419 (480)
T ss_pred EEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999886 9999993 345789999
Q ss_pred HHHHHHhhcCC
Q psy16939 163 LKNAQTMLNDP 173 (174)
Q Consensus 163 ~~al~~ll~~~ 173 (174)
.++++++|.++
T Consensus 420 ~~~v~~vm~~~ 430 (480)
T PLN02555 420 AECLLEATVGE 430 (480)
T ss_pred HHHHHHHhcCc
Confidence 99999999764
No 12
>PLN02210 UDP-glucosyl transferase
Probab=99.97 E-value=2.1e-30 Score=211.81 Aligned_cols=150 Identities=25% Similarity=0.395 Sum_probs=128.4
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC----ccccccCCCCCEEEeecCC
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND----PVLNAKTLPDNVFIQKWYP 95 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~nv~~~~~~p 95 (174)
+++.+|++..+ +++|||||||... .+.+.+++++.+|+..+.+|||+++.... ..+.++..+++..+.+|+|
T Consensus 257 ~~~~~wld~~~~~svvyvsfGS~~~---~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~P 333 (456)
T PLN02210 257 DCCMEWLDKQARSSVVYISFGSMLE---SLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSP 333 (456)
T ss_pred hHHHHHHhCCCCCceEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCC
Confidence 34789999887 7999999999876 68999999999999999999999875321 1121111135667889999
Q ss_pred chhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecCC----CCCHHHHHHHHHHhh
Q psy16939 96 QTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPIQ----TLTKQSFLKNAQTML 170 (174)
Q Consensus 96 ~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~~----~~~~~~l~~al~~ll 170 (174)
|.++|.|+++++||||||+||++|++++|||+|++|+++||+.||+++++ .|+|+.+... .++.++|+++++++|
T Consensus 334 Q~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 334 QEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred HHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998 8999998642 479999999999999
Q ss_pred cCC
Q psy16939 171 NDP 173 (174)
Q Consensus 171 ~~~ 173 (174)
.++
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 765
No 13
>PLN02764 glycosyltransferase family protein
Probab=99.97 E-value=3e-30 Score=209.71 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=130.1
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC--------CCcc-ccccCCCCCEE
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT--------NDPV-LNAKTLPDNVF 89 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~--------~~~~-~~~~~~~~nv~ 89 (174)
.+++.+|++..+ +++|||||||... ++.+.+.++..+|+..+.+|+|+.+.. .+++ |.++....++.
T Consensus 244 ~~~cl~WLD~q~~~sVvyvsfGS~~~---~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v 320 (453)
T PLN02764 244 EERWVKWLSGYEPDSVVFCALGSQVI---LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVV 320 (453)
T ss_pred hhHHHHHHhCCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcE
Confidence 457899999987 9999999999976 789999999999999999999999842 1222 32222345677
Q ss_pred EeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecCC---CCCHHHHHHH
Q psy16939 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPIQ---TLTKQSFLKN 165 (174)
Q Consensus 90 ~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~~---~~~~~~l~~a 165 (174)
+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|++.||+.||+++++ .|+|+.+..+ .++.++|+++
T Consensus 321 ~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~a 400 (453)
T PLN02764 321 WGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDA 400 (453)
T ss_pred EeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999964 8999987533 4799999999
Q ss_pred HHHhhcCC
Q psy16939 166 AQTMLNDP 173 (174)
Q Consensus 166 l~~ll~~~ 173 (174)
++++|+++
T Consensus 401 v~~vm~~~ 408 (453)
T PLN02764 401 INSVMKRD 408 (453)
T ss_pred HHHHhcCC
Confidence 99999763
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.97 E-value=3.1e-30 Score=212.05 Aligned_cols=149 Identities=19% Similarity=0.392 Sum_probs=126.0
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC---------Ccc-ccccCCCCCEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN---------DPV-LNAKTLPDNVF 89 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~---------~~~-~~~~~~~~nv~ 89 (174)
+++.+|++..+ +++|||||||... ++.+.+.+++.+|+..+++|||+++... +++ +.+ ...++.+
T Consensus 268 ~~~~~wld~~~~~svvyvsfGS~~~---~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~e-r~~~rg~ 343 (475)
T PLN02167 268 DRIMRWLDDQPESSVVFLCFGSLGS---LPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMD-RVMGRGL 343 (475)
T ss_pred HHHHHHHhcCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHH-HhccCee
Confidence 57999999987 7999999999865 6889999999999999999999987421 111 111 1122347
Q ss_pred EeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHH-HHHcCceeEecC-------CCCCHHH
Q psy16939 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL-LRHRGYALIEPI-------QTLTKQS 161 (174)
Q Consensus 90 ~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~-l~~~G~g~~l~~-------~~~~~~~ 161 (174)
+.+|+||.++|.|+++++||||||+||++|++++|||||++|+++||+.||++ ++.+|+|+.+.. ..++.++
T Consensus 344 v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 423 (475)
T PLN02167 344 VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADE 423 (475)
T ss_pred eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHH
Confidence 88999999999999999999999999999999999999999999999999976 678999998853 2468999
Q ss_pred HHHHHHHhhcCC
Q psy16939 162 FLKNAQTMLNDP 173 (174)
Q Consensus 162 l~~al~~ll~~~ 173 (174)
|.++++++|.++
T Consensus 424 l~~av~~~m~~~ 435 (475)
T PLN02167 424 IAGAVRSLMDGE 435 (475)
T ss_pred HHHHHHHHhcCC
Confidence 999999999754
No 15
>PLN00414 glycosyltransferase family protein
Probab=99.97 E-value=5.1e-30 Score=208.83 Aligned_cols=150 Identities=17% Similarity=0.286 Sum_probs=129.1
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC--------CCcc-ccccCCCCCEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT--------NDPV-LNAKTLPDNVFI 90 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~--------~~~~-~~~~~~~~nv~~ 90 (174)
+++.+|++..+ +++|||||||... ++.+.+.++..+|+..+.+|+|++... .+++ |.++....+..+
T Consensus 240 ~~~~~WLD~q~~~sVvyvsfGS~~~---~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv 316 (446)
T PLN00414 240 DRWNHWLNGFEPGSVVFCAFGTQFF---FEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVW 316 (446)
T ss_pred HHHHHHHhcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEE
Confidence 46889999988 8999999999986 688999999999999999999998752 1222 322223345666
Q ss_pred eecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHH-HcCceeEecCC---CCCHHHHHHHH
Q psy16939 91 QKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR-HRGYALIEPIQ---TLTKQSFLKNA 166 (174)
Q Consensus 91 ~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~-~~G~g~~l~~~---~~~~~~l~~al 166 (174)
.+|+||.++|.|+++++||||||+||++|++++|+|++++|++.||+.||++++ +.|+|+.+..+ .++.+++++++
T Consensus 317 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v 396 (446)
T PLN00414 317 EGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTV 396 (446)
T ss_pred eccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999996 68999999643 37999999999
Q ss_pred HHhhcCC
Q psy16939 167 QTMLNDP 173 (174)
Q Consensus 167 ~~ll~~~ 173 (174)
+++|.++
T Consensus 397 ~~~m~~~ 403 (446)
T PLN00414 397 KSVMDKD 403 (446)
T ss_pred HHHhcCC
Confidence 9999763
No 16
>PLN02562 UDP-glycosyltransferase
Probab=99.97 E-value=3e-30 Score=210.57 Aligned_cols=147 Identities=20% Similarity=0.336 Sum_probs=127.9
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC---CCcc-ccccCCCCCEEEeecCCc
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT---NDPV-LNAKTLPDNVFIQKWYPQ 96 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~---~~~~-~~~~~~~~nv~~~~~~p~ 96 (174)
++.+|++..+ +++|||||||... .++.+.+++++.+|+..+++|||+++.. .+++ +.+ ..++|+.+.+|+||
T Consensus 262 ~c~~wLd~~~~~svvyvsfGS~~~--~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~-~~~~~~~v~~w~PQ 338 (448)
T PLN02562 262 SCLGWLQEQKPNSVIYISFGSWVS--PIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVE-RVSKQGKVVSWAPQ 338 (448)
T ss_pred HHHHHHhcCCCCceEEEEeccccc--CCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHH-HhccCEEEEecCCH
Confidence 4569999987 7899999999753 2689999999999999999999998642 2332 222 35689999999999
Q ss_pred hhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 97 TDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 97 ~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.++|.|+++.+||||||+||++|++++|||+|++|+++||+.||+++++ .|+|+.+. +++.+++.++++++|.++
T Consensus 339 ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~ 414 (448)
T PLN02562 339 LEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDS 414 (448)
T ss_pred HHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999987 58888873 578999999999999764
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=99.97 E-value=7e-30 Score=209.91 Aligned_cols=151 Identities=21% Similarity=0.323 Sum_probs=126.8
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC---------------Ccc-cccc
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN---------------DPV-LNAK 82 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~---------------~~~-~~~~ 82 (174)
++++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++... +++ +.++
T Consensus 259 ~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 335 (480)
T PLN00164 259 PHECVRWLDAQPPASVVFLCFGSMGF---FDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER 335 (480)
T ss_pred hHHHHHHHHhCCCCceEEEEeccccc---CCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH
Confidence 357999999987 7999999999865 6888999999999999999999987421 110 1111
Q ss_pred CCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHH-HcCceeEecCC-----C
Q psy16939 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR-HRGYALIEPIQ-----T 156 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~-~~G~g~~l~~~-----~ 156 (174)
....++.+.+|+||.++|.|+++.+||||||+||++|++++|||||++|+++||+.||+++. .+|+|+.+..+ .
T Consensus 336 ~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 336 TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred hcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 12234777799999999999999999999999999999999999999999999999999885 58999998532 3
Q ss_pred CCHHHHHHHHHHhhcCC
Q psy16939 157 LTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 157 ~~~~~l~~al~~ll~~~ 173 (174)
.+.++|.++++++|.++
T Consensus 416 ~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 416 VEAAELERAVRSLMGGG 432 (480)
T ss_pred CcHHHHHHHHHHHhcCC
Confidence 68999999999999764
No 18
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.97 E-value=7.7e-30 Score=207.55 Aligned_cols=147 Identities=23% Similarity=0.391 Sum_probs=126.3
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC---CCcc-ccccCCCCCEEEeecCCc
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT---NDPV-LNAKTLPDNVFIQKWYPQ 96 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~---~~~~-~~~~~~~~nv~~~~~~p~ 96 (174)
.+.+|++..+ +++|||||||... ++.+.+.+++.+| .+.+|+|+++.. .+++ +.++..++|+.+.+|+||
T Consensus 253 ~c~~WLd~~~~~svvyvsfGS~~~---~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ 327 (449)
T PLN02173 253 LCTDWLDKRPQGSVVYIAFGSMAK---LSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQ 327 (449)
T ss_pred HHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCH
Confidence 4889999988 7899999999875 7899999999999 566899999742 2332 323223688999999999
Q ss_pred hhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHc-CceeEecCC----CCCHHHHHHHHHHhhc
Q psy16939 97 TDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR-GYALIEPIQ----TLTKQSFLKNAQTMLN 171 (174)
Q Consensus 97 ~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~-G~g~~l~~~----~~~~~~l~~al~~ll~ 171 (174)
.++|.|+++.+||||||+||++|++++|||+|++|+++||+.||+++++. |+|+.+..+ ..+.+++.++++++|.
T Consensus 328 ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 328 LQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVME 407 (449)
T ss_pred HHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999975 999887533 2589999999999997
Q ss_pred CC
Q psy16939 172 DP 173 (174)
Q Consensus 172 ~~ 173 (174)
++
T Consensus 408 ~~ 409 (449)
T PLN02173 408 GE 409 (449)
T ss_pred CC
Confidence 65
No 19
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.97 E-value=5.6e-30 Score=210.95 Aligned_cols=151 Identities=23% Similarity=0.373 Sum_probs=127.1
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC--------CCcc-ccccCCCCCEE
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT--------NDPV-LNAKTLPDNVF 89 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~--------~~~~-~~~~~~~~nv~ 89 (174)
++++.+|++..+ +++|||||||... ++.+.+.+++.+|+..+++|||+++.. .+++ +.++..+.|+.
T Consensus 272 ~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~ 348 (482)
T PLN03007 272 EQECLKWLDSKKPDSVIYLSFGSVAS---FKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLI 348 (482)
T ss_pred hhHHHHHHhcCCCCceEEEeecCCcC---CCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEE
Confidence 356899999987 8999999999965 678899999999999999999998852 1231 22222467899
Q ss_pred EeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH---cCceeEe------cCCCCCHH
Q psy16939 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH---RGYALIE------PIQTLTKQ 160 (174)
Q Consensus 90 ~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~---~G~g~~l------~~~~~~~~ 160 (174)
+.+|+||.++|.|+++.+||||||+||++||+++|||+|++|+++||+.||+++++ .|+|+.. +...++.+
T Consensus 349 v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 428 (482)
T PLN03007 349 IRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISRE 428 (482)
T ss_pred EecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHH
Confidence 99999999999999999999999999999999999999999999999999998874 4555432 33457999
Q ss_pred HHHHHHHHhhcCC
Q psy16939 161 SFLKNAQTMLNDP 173 (174)
Q Consensus 161 ~l~~al~~ll~~~ 173 (174)
+|.++++++|.++
T Consensus 429 ~l~~av~~~m~~~ 441 (482)
T PLN03007 429 KVEKAVREVIVGE 441 (482)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999875
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.97 E-value=1.1e-29 Score=208.11 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=127.1
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
++.+|++..+ +++|||||||... ++.+.+++++++|+..+++|||+.+... ..+.+ ..++|..+.+|+||.++|
T Consensus 263 ~~~~wl~~~~~~~vvyvsfGs~~~---~~~~~~~~~~~~l~~~~~~~lw~~~~~~-~~~~~-~~~~~~~v~~w~pQ~~iL 337 (459)
T PLN02448 263 DYFQWLDSQPEGSVLYVSLGSFLS---VSSAQMDEIAAGLRDSGVRFLWVARGEA-SRLKE-ICGDMGLVVPWCDQLKVL 337 (459)
T ss_pred HHHHHHcCCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCCEEEEEcCch-hhHhH-hccCCEEEeccCCHHHHh
Confidence 7889999987 8999999999875 6788999999999999999999876431 11111 234688999999999999
Q ss_pred cCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecC-----CCCCHHHHHHHHHHhhcCC
Q psy16939 101 AHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPI-----QTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~-----~~~~~~~l~~al~~ll~~~ 173 (174)
.|+++.+||||||+||++|++++|+|+|++|+++||+.||+++++ +|+|+.+.. ...+.++|+++++++|.++
T Consensus 338 ~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 338 CHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999998 588888742 2468999999999999763
No 21
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.97 E-value=2.4e-29 Score=206.44 Aligned_cols=148 Identities=24% Similarity=0.374 Sum_probs=126.3
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--------Ccc-ccccCCCCCEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--------DPV-LNAKTLPDNVFI 90 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--------~~~-~~~~~~~~nv~~ 90 (174)
+++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++... ++. +.++....++++
T Consensus 271 ~~~~~WLd~~~~~svVyvsfGS~~~---~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v 347 (477)
T PLN02863 271 DDVMTWLDTCEDHKVVYVCFGSQVV---LTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVI 347 (477)
T ss_pred HHHHHHHhcCCCCceEEEEeeceec---CCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEe
Confidence 47999999987 8999999999976 6889999999999999999999997421 121 211122457888
Q ss_pred eecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHH-HcCceeEecC---CCCCHHHHHHHH
Q psy16939 91 QKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR-HRGYALIEPI---QTLTKQSFLKNA 166 (174)
Q Consensus 91 ~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~-~~G~g~~l~~---~~~~~~~l~~al 166 (174)
.+|+||.++|.|+++++||||||+||++||+++|||+|++|+++||+.||++++ ++|+|+.+.. ...+.+++.+++
T Consensus 348 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v 427 (477)
T PLN02863 348 RGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVF 427 (477)
T ss_pred cCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999976 4799999843 235789999999
Q ss_pred HHhhc
Q psy16939 167 QTMLN 171 (174)
Q Consensus 167 ~~ll~ 171 (174)
++++.
T Consensus 428 ~~~m~ 432 (477)
T PLN02863 428 MESVS 432 (477)
T ss_pred HHHhh
Confidence 99883
No 22
>PLN03015 UDP-glucosyl transferase
Probab=99.96 E-value=5.1e-29 Score=203.16 Aligned_cols=159 Identities=21% Similarity=0.385 Sum_probs=132.2
Q ss_pred cccCCcccc-----CChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC------
Q psy16939 9 VKLCSMCFI-----DGLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND------ 76 (174)
Q Consensus 9 ~~~~g~~~~-----~~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~------ 76 (174)
+-.+||... ..++++.+|++..+ +++|||||||... ++.+.+++++.+|+..+++|||+++....
T Consensus 238 v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~---~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~ 314 (470)
T PLN03015 238 VYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGT---LTFEQTVELAWGLELSGQRFVWVLRRPASYLGASS 314 (470)
T ss_pred eEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCc---CCHHHHHHHHHHHHhCCCcEEEEEecCcccccccc
Confidence 445666642 12347999999987 8999999999976 89999999999999999999999963210
Q ss_pred ---ccccccCCCCC---------EEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHH-
Q psy16939 77 ---PVLNAKTLPDN---------VFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL- 143 (174)
Q Consensus 77 ---~~~~~~~~~~n---------v~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l- 143 (174)
....+ .+|+| +.+.+|+||.++|.|+++.+||||||+||+.|++++||||+++|+++||+.||+++
T Consensus 315 ~~~~~~~~-~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~ 393 (470)
T PLN03015 315 SDDDQVSA-SLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT 393 (470)
T ss_pred ccccchhh-cCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHH
Confidence 00000 23444 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeEec----CCCCCHHHHHHHHHHhhc
Q psy16939 144 RHRGYALIEP----IQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 144 ~~~G~g~~l~----~~~~~~~~l~~al~~ll~ 171 (174)
+..|+|+.+. ....+.+++.++++++|.
T Consensus 394 ~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 394 EEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred HHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 5689999985 235789999999999995
No 23
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-28 Score=197.56 Aligned_cols=155 Identities=25% Similarity=0.347 Sum_probs=132.3
Q ss_pred cccCCccccCChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCE
Q psy16939 9 VKLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNV 88 (174)
Q Consensus 9 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv 88 (174)
..+.||.......++..|... ++++||+++||... . .++++.+++++..++.+||+..++.... ....+.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~-d~~~vyvslGt~~~---~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~---~~~~p~n~ 286 (406)
T COG1819 215 GPYIGPLLGEAANELPYWIPA-DRPIVYVSLGTVGN---A-VELLAIVLEALADLDVRVIVSLGGARDT---LVNVPDNV 286 (406)
T ss_pred cCccccccccccccCcchhcC-CCCeEEEEcCCccc---H-HHHHHHHHHHHhcCCcEEEEeccccccc---cccCCCce
Confidence 334444444444555566333 36999999999976 2 7899999999999999999988762221 11789999
Q ss_pred EEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHH
Q psy16939 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQT 168 (174)
Q Consensus 89 ~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ 168 (174)
.+.+|+||..++ ++||+||||||+||++|||++|||+|++|...||+.||.++++.|+|+.+..+.++.+.++++|++
T Consensus 287 ~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~ 364 (406)
T COG1819 287 IVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNE 364 (406)
T ss_pred EEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHH
Confidence 999999999999 889999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhcCC
Q psy16939 169 MLNDP 173 (174)
Q Consensus 169 ll~~~ 173 (174)
+|+|+
T Consensus 365 vL~~~ 369 (406)
T COG1819 365 VLADD 369 (406)
T ss_pred HhcCH
Confidence 99875
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.95 E-value=9.3e-28 Score=193.39 Aligned_cols=163 Identities=26% Similarity=0.389 Sum_probs=136.5
Q ss_pred cccCccccCCccccCChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcccccc
Q psy16939 4 VLNRAVKLCSMCFIDGLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAK 82 (174)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~ 82 (174)
.++.+++++||++...+ +...|....+ +++|||++||... .....++++++++.+.+.+++|..+.....+.. .
T Consensus 197 ~~~~~~~~~Gp~~~~~~-~~~~~~~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~-~ 271 (392)
T TIGR01426 197 TFDDSFTFVGPCIGDRK-EDGSWERPGDGRPVVLISLGTVFN---NQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADL-G 271 (392)
T ss_pred ccCCCeEEECCCCCCcc-ccCCCCCCCCCCCEEEEecCccCC---CCHHHHHHHHHHHhcCCCeEEEEECCCCChhHh-c
Confidence 56788999999886533 2334666544 8999999999754 245689999999999999999888754221100 1
Q ss_pred CCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy16939 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSF 162 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l 162 (174)
..++|+.+.+|+|+.+++ +.+|++|||||+||++|++++|+|+|++|...||..||+++++.|+|+.+...+++.++|
T Consensus 272 ~~~~~v~~~~~~p~~~ll--~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l 349 (392)
T TIGR01426 272 ELPPNVEVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKL 349 (392)
T ss_pred cCCCCeEEeCCCCHHHHH--hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHH
Confidence 467899999999999999 679999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHhhcCC
Q psy16939 163 LKNAQTMLNDP 173 (174)
Q Consensus 163 ~~al~~ll~~~ 173 (174)
.++++++++|+
T Consensus 350 ~~ai~~~l~~~ 360 (392)
T TIGR01426 350 REAVLAVLSDP 360 (392)
T ss_pred HHHHHHHhcCH
Confidence 99999999875
No 25
>PLN02534 UDP-glycosyltransferase
Probab=99.95 E-value=1.8e-27 Score=195.53 Aligned_cols=148 Identities=24% Similarity=0.411 Sum_probs=127.0
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC---------Ccc-ccccCCCCCEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN---------DPV-LNAKTLPDNVF 89 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~---------~~~-~~~~~~~~nv~ 89 (174)
+++.+|++..+ +++|||+|||... +..+.+.+++.+|+..+++|||+++... +++ |.++..+.+++
T Consensus 271 ~~cl~wLd~~~~~sVvyvsfGS~~~---~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~ 347 (491)
T PLN02534 271 TQCLEWLDSMKPRSVIYACLGSLCR---LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLL 347 (491)
T ss_pred HHHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCee
Confidence 35889999998 8999999999975 7899999999999999999999998421 222 32222467888
Q ss_pred EeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH-cCceeEecC---------C----
Q psy16939 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH-RGYALIEPI---------Q---- 155 (174)
Q Consensus 90 ~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~-~G~g~~l~~---------~---- 155 (174)
+.+|+||.++|.|+++.+||||||+||++||+++|+|+|++|.+.||+.||+++++ +|+|+.+.. +
T Consensus 348 v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~ 427 (491)
T PLN02534 348 IKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGV 427 (491)
T ss_pred ccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccC
Confidence 89999999999999999999999999999999999999999999999999999974 799887631 1
Q ss_pred CCCHHHHHHHHHHhhc
Q psy16939 156 TLTKQSFLKNAQTMLN 171 (174)
Q Consensus 156 ~~~~~~l~~al~~ll~ 171 (174)
..+.+++.++++++|.
T Consensus 428 ~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 428 LVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccCHHHHHHHHHHHhc
Confidence 2689999999999996
No 26
>KOG1192|consensus
Probab=99.95 E-value=3.1e-27 Score=195.33 Aligned_cols=153 Identities=31% Similarity=0.532 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCcccccc--C-CCCCEEEeecCCc
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVLNAK--T-LPDNVFIQKWYPQ 96 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~--~-~~~nv~~~~~~p~ 96 (174)
.++.+.++....++||||+||...+..++.+...+++.++++. +++|+|.+.......+.+. . .+.|+...+|+||
T Consensus 266 ~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ 345 (496)
T KOG1192|consen 266 LEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQ 345 (496)
T ss_pred HHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCc
Confidence 3444444442238999999999865568999999999999999 6789999987432110000 1 2568999999999
Q ss_pred hhh-hcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 97 TDI-LAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 97 ~~~-l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.++ |.|++.++||||||+||++|++++|||++++|+++||+.||+++++.|.+.++...+.+.+.+.+++.+++.++
T Consensus 346 ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 346 NDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred HHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 998 48899999999999999999999999999999999999999999999999998877776666888888887665
No 27
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.95 E-value=3.8e-27 Score=190.07 Aligned_cols=146 Identities=26% Similarity=0.295 Sum_probs=127.2
Q ss_pred ChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchh
Q psy16939 19 GLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD 98 (174)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ 98 (174)
.+.++..|++.. +++|||++||... .........++++++..+.+++|..+...... ...++|+++.+|+|+.+
T Consensus 227 ~~~~~~~~~~~~-~~~v~v~~Gs~~~--~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~---~~~~~~v~~~~~~p~~~ 300 (401)
T cd03784 227 PPPELWLFLAAG-RPPVYVGFGSMVV--RDPEALARLDVEAVATLGQRAILSLGWGGLGA---EDLPDNVRVVDFVPHDW 300 (401)
T ss_pred CCHHHHHHHhCC-CCcEEEeCCCCcc--cCHHHHHHHHHHHHHHcCCeEEEEccCccccc---cCCCCceEEeCCCCHHH
Confidence 356777887654 5999999999865 23567889999999998999999988654321 15678999999999999
Q ss_pred hhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 99 ILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
+| +.||++|||||+||++|++++|+|+|++|...||+.||+++++.|+|+.+...+++.++|.+++++++++
T Consensus 301 ll--~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 301 LL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred Hh--hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 99 6799999999999999999999999999999999999999999999999988778999999999999875
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.80 E-value=7.7e-19 Score=137.68 Aligned_cols=121 Identities=20% Similarity=0.309 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCccccccCCCCCEEEeecC--CchhhhcCCCccEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPVLNAKTLPDNVFIQKWY--PQTDILAHPNLRLF 108 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~--p~~~~l~~~~~~~~ 108 (174)
++.|+|++|+... . .+.++++..+ +++++. +..... ...+|+.+.+|. +..++| +.||++
T Consensus 192 ~~~iLv~~gg~~~-----~----~~~~~l~~~~~~~~~v~-g~~~~~-----~~~~ni~~~~~~~~~~~~~m--~~ad~v 254 (318)
T PF13528_consen 192 EPKILVYFGGGGP-----G----DLIEALKALPDYQFIVF-GPNAAD-----PRPGNIHVRPFSTPDFAELM--AAADLV 254 (318)
T ss_pred CCEEEEEeCCCcH-----H----HHHHHHHhCCCCeEEEE-cCCccc-----ccCCCEEEeecChHHHHHHH--HhCCEE
Confidence 5889999999964 2 6677777777 577776 544322 447899999986 455677 789999
Q ss_pred EecCChhhHHHHHHcCCCeEeccc--cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHh
Q psy16939 109 ITHGGISSLMEASSLGVPVLGVPF--FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 109 I~hgG~~t~~eal~~g~P~i~vP~--~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~l 169 (174)
|+|||++|++|++++|+|++++|. +.||..||+++++.|+|+.++.++++++.|.++|+++
T Consensus 255 Is~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 255 ISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 999999999999999999999998 7899999999999999999998899999999999875
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.80 E-value=5.3e-19 Score=140.84 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=103.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecC-Cch-hhhcCCCccEEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWY-PQT-DILAHPNLRLFI 109 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~-p~~-~~l~~~~~~~~I 109 (174)
+++|+|..||.+.. .-++.+.+++..+.. +.+++|++|.....+... . ..++.+.+|+ +.+ +++ ..||++|
T Consensus 185 ~~~iLv~GGS~Ga~--~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~-~-~~~~~~~~f~~~~m~~~~--~~adlvI 257 (352)
T PRK12446 185 KPVITIMGGSLGAK--KINETVREALPELLL-KYQIVHLCGKGNLDDSLQ-N-KEGYRQFEYVHGELPDIL--AITDFVI 257 (352)
T ss_pred CcEEEEECCccchH--HHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHh-h-cCCcEEecchhhhHHHHH--HhCCEEE
Confidence 78999999999751 112333344443322 478999999765443111 1 1355667887 544 456 7899999
Q ss_pred ecCChhhHHHHHHcCCCeEecccc-----chHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 110 THGGISSLMEASSLGVPVLGVPFF-----GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 110 ~hgG~~t~~eal~~g~P~i~vP~~-----~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
||||++|+.|++++|+|+|++|+. +||..||+++++.|++..+..++++.+.|.+++.++++|+
T Consensus 258 sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 258 SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCH
Confidence 999999999999999999999984 5899999999999999999888899999999999998764
No 30
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.80 E-value=5.7e-21 Score=137.09 Aligned_cols=136 Identities=22% Similarity=0.340 Sum_probs=97.1
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcccccc--CCCCCEEEeecCCch-hhhcCCCccEE
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPVLNAK--TLPDNVFIQKWYPQT-DILAHPNLRLF 108 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~-~~l~~~~~~~~ 108 (174)
.|+|+.||.+... -.+.+.++...+... ..++++++|.....+.... ....++.+.+|.+++ +++ ..||++
T Consensus 1 tilv~gGs~g~~~--l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m--~~aDlv 76 (167)
T PF04101_consen 1 TILVTGGSQGARD--LNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELM--AAADLV 76 (167)
T ss_dssp -EEEEETTTSHHH--HHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHH--HHHSEE
T ss_pred CEEEEECCCCHHH--HHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHH--HHcCEE
Confidence 4899999886410 011222333333332 3689999987644321110 223789999999944 566 789999
Q ss_pred EecCChhhHHHHHHcCCCeEeccccc----hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 109 ITHGGISSLMEASSLGVPVLGVPFFG----DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 109 I~hgG~~t~~eal~~g~P~i~vP~~~----dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|||||.+|++|+++.|+|+|++|... ||..||..+++.|+|+.+.....+.++|.++|.++++++
T Consensus 77 Is~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 77 ISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp EECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred EeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCc
Confidence 99999999999999999999999988 999999999999999999888878899999999988763
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=8.4e-19 Score=139.23 Aligned_cols=137 Identities=20% Similarity=0.247 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCccccccCCCCC-EEEeecCCchhhhcCCCccE
Q psy16939 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPVLNAKTLPDN-VFIQKWYPQTDILAHPNLRL 107 (174)
Q Consensus 31 ~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~n-v~~~~~~p~~~~l~~~~~~~ 107 (174)
++++|+|..||.+. ..+-+.+.+++... +..+++.+|...+.+........+ +.+.+|++++..+. ..+|+
T Consensus 182 ~~~~ilV~GGS~Ga-----~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~-~~ADL 255 (357)
T COG0707 182 DKKTILVTGGSQGA-----KALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALL-AAADL 255 (357)
T ss_pred CCcEEEEECCcchh-----HHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHH-HhccE
Confidence 37999999999975 33333344444333 468888888865433211111222 89999998877553 79999
Q ss_pred EEecCChhhHHHHHHcCCCeEecccc----chHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 108 FITHGGISSLMEASSLGVPVLGVPFF----GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 108 ~I~hgG~~t~~eal~~g~P~i~vP~~----~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+||++|++|+.|+++.|+|+|++|+. +||..||+.++++|+|++++..+++.+++.+.|.++++++
T Consensus 256 vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 256 VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 99999999999999999999999873 4999999999999999999999999999999999999864
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.74 E-value=4.5e-17 Score=128.26 Aligned_cols=123 Identities=24% Similarity=0.350 Sum_probs=92.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCCCCccccccCCCCCEEEeecCC--chhhhcCCCccEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDITNDPVLNAKTLPDNVFIQKWYP--QTDILAHPNLRLF 108 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p--~~~~l~~~~~~~~ 108 (174)
++.|+|.+|+.. .+.+++++.+.+. .+++. +.+.... ..++|+.+.+|.+ ..+.| +.||++
T Consensus 188 ~~~iLv~~g~~~---------~~~l~~~l~~~~~~~~i~~-~~~~~~~----~~~~~v~~~~~~~~~~~~~l--~~ad~v 251 (321)
T TIGR00661 188 EDYILVYIGFEY---------RYKILELLGKIANVKFVCY-SYEVAKN----SYNENVEIRRITTDNFKELI--KNAELV 251 (321)
T ss_pred CCcEEEECCcCC---------HHHHHHHHHhCCCeEEEEe-CCCCCcc----ccCCCEEEEECChHHHHHHH--HhCCEE
Confidence 477888887763 3455677777664 44432 2222111 4568999999987 33455 889999
Q ss_pred EecCChhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 109 ITHGGISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 109 I~hgG~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|||||++|++|++++|+|++++|..+ ||..||+.+++.|+|+.++..++ ++.+++.+++.++
T Consensus 252 I~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 252 ITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMK 315 (321)
T ss_pred EECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhccccc
Confidence 99999999999999999999999854 89999999999999999976654 5666666666664
No 33
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.54 E-value=8.6e-14 Score=107.97 Aligned_cols=137 Identities=23% Similarity=0.220 Sum_probs=109.0
Q ss_pred CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-Cc--EEEEecCCCCcc-----ccc-cCCCCCEEEeecCCchhhhc
Q psy16939 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LP--IFWKIDITNDPV-----LNA-KTLPDNVFIQKWYPQTDILA 101 (174)
Q Consensus 31 ~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~--~i~~~~~~~~~~-----~~~-~~~~~nv~~~~~~p~~~~l~ 101 (174)
++..|+||.|+..- ..+++...+++....+ .+ .++.+|+. +|+ +.. ...-+++.+..|-.+..-|.
T Consensus 218 E~~~Ilvs~GGG~d----G~eLi~~~l~A~~~l~~l~~~~~ivtGP~-MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll 292 (400)
T COG4671 218 EGFDILVSVGGGAD----GAELIETALAAAQLLAGLNHKWLIVTGPF-MPEAQRQKLLASAPKRPHISIFEFRNDFESLL 292 (400)
T ss_pred ccceEEEecCCChh----hHHHHHHHHHHhhhCCCCCcceEEEeCCC-CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHH
Confidence 35789999998864 7888888888876643 33 55556653 221 111 12347999999976555333
Q ss_pred CCCccEEEecCChhhHHHHHHcCCCeEecccc---chHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 102 HPNLRLFITHGGISSLMEASSLGVPVLGVPFF---GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~---~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
..|+.+|+-||+||+||.+++|+|.++||+. .||...|.+++++|+.-++.+++++++.+.+++...++-|
T Consensus 293 -~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 293 -AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred -HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 7899999999999999999999999999984 4999999999999999999999999999999999888743
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.50 E-value=2.4e-13 Score=108.19 Aligned_cols=135 Identities=20% Similarity=0.206 Sum_probs=97.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC--cEEEEecCCCCcccccc-CCCCCEEEeecCC-chhhhcCCCccE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL--PIFWKIDITNDPVLNAK-TLPDNVFIQKWYP-QTDILAHPNLRL 107 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~--~~i~~~~~~~~~~~~~~-~~~~nv~~~~~~p-~~~~l~~~~~~~ 107 (174)
.++|++..|+.. .......+.+++++... .+++.+|....+++.+. ...-++.+.+|++ ..+++ +.+|+
T Consensus 183 ~~~i~~~gg~~~-----~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~ 255 (357)
T PRK00726 183 KPTLLVVGGSQG-----ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAY--AAADL 255 (357)
T ss_pred CeEEEEECCcHh-----HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHH--HhCCE
Confidence 455666555542 12222333355554433 45566665443322110 1222488899984 45677 78999
Q ss_pred EEecCChhhHHHHHHcCCCeEeccc----cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 108 FITHGGISSLMEASSLGVPVLGVPF----FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 108 ~I~hgG~~t~~eal~~g~P~i~vP~----~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|+|+|.++++||+++|+|+|++|. .++|..|+..+.+.|.|+.+..++++.+.+.++++++++|+
T Consensus 256 ~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~ 325 (357)
T PRK00726 256 VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDP 325 (357)
T ss_pred EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCH
Confidence 9999999999999999999999986 47899999999999999999888888999999999999875
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.46 E-value=4.3e-13 Score=103.85 Aligned_cols=129 Identities=21% Similarity=0.188 Sum_probs=93.0
Q ss_pred CccccCCccccCChHHHHHHHhcCC----CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC--CcEEEEecCCCCc--c
Q psy16939 7 RAVKLCSMCFIDGLSDLQQRADAAK----GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK--LPIFWKIDITNDP--V 78 (174)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~----~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~--~~~i~~~~~~~~~--~ 78 (174)
+...+.|+-+.++.+++.+.-.... .+.|+|++|+... .....++++++.+.. .++.+.+|+.... +
T Consensus 141 ~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~-----~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~ 215 (279)
T TIGR03590 141 NCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADP-----DNLTLKLLSALAESQINISITLVTGSSNPNLDE 215 (279)
T ss_pred CCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCC-----cCHHHHHHHHHhccccCceEEEEECCCCcCHHH
Confidence 4455778877778777765443222 2679999998754 335666777776653 4677777764311 1
Q ss_pred cccc-CCCCCEEEeecCCch-hhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHH
Q psy16939 79 LNAK-TLPDNVFIQKWYPQT-DILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143 (174)
Q Consensus 79 ~~~~-~~~~nv~~~~~~p~~-~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l 143 (174)
+.+. ....|+.+..|.+++ .+| ..||++|++|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 216 l~~~~~~~~~i~~~~~~~~m~~lm--~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 216 LKKFAKEYPNIILFIDVENMAELM--NEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred HHHHHHhCCCEEEEeCHHHHHHHH--HHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 1110 224589999999887 456 78999999999 89999999999999999999999999763
No 36
>KOG3349|consensus
Probab=99.45 E-value=7e-13 Score=91.22 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=89.4
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCCCC--cc-ccc--cCCCCCEEEeecCCc-hhhhcCCCc
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDITND--PV-LNA--KTLPDNVFIQKWYPQ-TDILAHPNL 105 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~~~--~~-~~~--~~~~~nv~~~~~~p~-~~~l~~~~~ 105 (174)
..+||+.||..+..-.+.-..++..+.|.+.|+ +.++++|.... ++ ... +...-.+..++|-|. .+.. .+|
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I--~~A 81 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI--RSA 81 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHH--hhc
Confidence 689999999975221223345677788888897 78999887531 11 110 011223555666776 4444 679
Q ss_pred cEEEecCChhhHHHHHHcCCCeEeccc----cchHHHHHHHHHHcCceeEecCCC
Q psy16939 106 RLFITHGGISSLMEASSLGVPVLGVPF----FGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 106 ~~~I~hgG~~t~~eal~~g~P~i~vP~----~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
|++|+|+|+||+.|.+..|+|.|+++. ..+|.+-|..+++.|.=......+
T Consensus 82 dlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 82 DLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred cEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 999999999999999999999999985 679999999999999988875543
No 37
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.41 E-value=1.7e-12 Score=102.82 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=96.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccc--cCCCCCEEEeecC-CchhhhcCCCccEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNA--KTLPDNVFIQKWY-PQTDILAHPNLRLF 108 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~~nv~~~~~~-p~~~~l~~~~~~~~ 108 (174)
+++|++..|+.... ...+.+.+.+..+.+.+..+++.+|.....++.+ ....+|+.+.+|. +..++| ..||++
T Consensus 181 ~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l--~~ad~~ 256 (350)
T cd03785 181 KPTLLVFGGSQGAR--AINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAY--AAADLV 256 (350)
T ss_pred CeEEEEECCcHhHH--HHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHH--HhcCEE
Confidence 45566656655320 0112222333444322345566666543222111 0224689999998 445566 789999
Q ss_pred EecCChhhHHHHHHcCCCeEeccc----cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 109 ITHGGISSLMEASSLGVPVLGVPF----FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 109 I~hgG~~t~~eal~~g~P~i~vP~----~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|+++|.+|+.||+++|+|++++|. ..+|..|+..+.+.|.|+.+...+.+.+++.++++++++++
T Consensus 257 v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 257 ISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred EECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 999999999999999999999985 46899999999999999999766668999999999998764
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.34 E-value=2.6e-11 Score=98.08 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=96.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh-hC-CCcEEEEecCCC-C-cccccc-CCCCCEEEeecCCchh-hhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK-QL-KLPIFWKIDITN-D-PVLNAK-TLPDNVFIQKWYPQTD-ILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~-~~-~~~~i~~~~~~~-~-~~~~~~-~~~~nv~~~~~~p~~~-~l~~~~~ 105 (174)
+++++++.|+.+. ...+..+++++. .. +.++++.+|... + +++.+. ...+++.+.+|.++.. ++ ..|
T Consensus 202 ~~~ilv~~G~lg~-----~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~--~~a 274 (391)
T PRK13608 202 KQTILMSAGAFGV-----SKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWM--ASS 274 (391)
T ss_pred CCEEEEECCCccc-----chhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHH--Hhh
Confidence 5788888888753 123455555533 22 346777666542 1 112110 2345899999987654 55 789
Q ss_pred cEEEecCChhhHHHHHHcCCCeEec-cccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 106 RLFITHGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 106 ~~~I~hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|++|+.+|..|+.||++.|+|+|+. |..++|..|+..+.+.|+|+... +.+++.+++.++++|+
T Consensus 275 Dl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 275 QLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGN 339 (391)
T ss_pred hEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCH
Confidence 9999999989999999999999999 77788889999999999998864 6788999999998764
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.26 E-value=1.1e-10 Score=94.12 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh-----hCCCcEEEEecCCC-C-ccccccCCCCCEEEeecCCchhhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK-----QLKLPIFWKIDITN-D-PVLNAKTLPDNVFIQKWYPQTDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~-----~~~~~~i~~~~~~~-~-~~~~~~~~~~nv~~~~~~p~~~~l~~~~ 104 (174)
+++|++..|+.... .....++.+.+.+. ..+.++++.+|... . .++.+.....++.+.+|+++...+. ..
T Consensus 206 ~~~il~~Gg~~g~~--~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~-~a 282 (382)
T PLN02605 206 LPAVLLMGGGEGMG--PLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM-GA 282 (382)
T ss_pred CcEEEEECCCcccc--cHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH-Hh
Confidence 56777777766431 12233333333221 12345666676542 1 1121112245789999998666443 78
Q ss_pred ccEEEecCChhhHHHHHHcCCCeEeccc-cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 105 LRLFITHGGISSLMEASSLGVPVLGVPF-FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~i~vP~-~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
+|++|+.+|.+|+.||++.|+|+|+.+. .+.+..|+..+.+.|.|+.+. +.+++.+++.+++++
T Consensus 283 aDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~ 347 (382)
T PLN02605 283 CDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGD 347 (382)
T ss_pred CCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcC
Confidence 9999999999999999999999999964 455567999999999998762 789999999999876
No 40
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.25 E-value=9.1e-11 Score=94.27 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=96.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCC-C-ccccc--cCCCCCEEEeecCCch-hhhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITN-D-PVLNA--KTLPDNVFIQKWYPQT-DILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~-~-~~~~~--~~~~~nv~~~~~~p~~-~~l~~~~~ 105 (174)
++++++..|+... ...+..+++++.+. +.++++..+... . .++.+ +..++|+.+.+|+++. +++ ..|
T Consensus 202 ~~~il~~~G~~~~-----~k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~--~~a 274 (380)
T PRK13609 202 KKILLIMAGAHGV-----LGNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELF--RVT 274 (380)
T ss_pred CcEEEEEcCCCCC-----CcCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHH--Hhc
Confidence 5677887787753 12245667776654 357777666431 1 11110 1334689999999865 566 679
Q ss_pred cEEEecCChhhHHHHHHcCCCeEec-cccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 106 RLFITHGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 106 ~~~I~hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|++|+.+|..|+.||+++|+|+|+. |..++|..|+..+.+.|+++... +.+++.+++.++++|+
T Consensus 275 D~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 275 SCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDD 339 (380)
T ss_pred cEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCH
Confidence 9999999988999999999999985 67778889999999999998763 6789999999998774
No 41
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=1.9e-10 Score=87.23 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=118.3
Q ss_pred cccCCccccCChHHHHHHHhc---CCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--Ccccc-cc
Q psy16939 9 VKLCSMCFIDGLSDLQQRADA---AKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--DPVLN-AK 82 (174)
Q Consensus 9 ~~~~g~~~~~~~~~~~~~~~~---~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~~~~~-~~ 82 (174)
--++||.+.++.+++.+--+. +++.-|+|++|+. .+..+..+++..|.+.++.+-+++++.. +.... ..
T Consensus 132 ~~~lGp~y~~lr~eF~~~r~~~~~r~~r~ilI~lGGs-----Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~ 206 (318)
T COG3980 132 RYYLGPGYAPLRPEFYALREENTERPKRDILITLGGS-----DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRA 206 (318)
T ss_pred EEEecCCceeccHHHHHhHHHHhhcchheEEEEccCC-----ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHH
Confidence 356899998888776654332 2346699999998 4677899999999998876666666422 22110 01
Q ss_pred CCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy16939 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSF 162 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l 162 (174)
...+|+.+......+.-|+ .+||+.|+.||. |++|+++.|+|.+++|+...|...|+.++..|+-..+... ++.+..
T Consensus 207 ~~~~~i~~~~~~~dma~LM-ke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~ 283 (318)
T COG3980 207 EKYPNINLYIDTNDMAELM-KEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAK 283 (318)
T ss_pred hhCCCeeeEecchhHHHHH-Hhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHH
Confidence 3457888888877666454 789999999996 8999999999999999999999999999999999887654 566666
Q ss_pred HHHHHHhhcC
Q psy16939 163 LKNAQTMLND 172 (174)
Q Consensus 163 ~~al~~ll~~ 172 (174)
...+.++.+|
T Consensus 284 ~~~~~~i~~d 293 (318)
T COG3980 284 DYEILQIQKD 293 (318)
T ss_pred HHHHHHhhhC
Confidence 6667776665
No 42
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.24 E-value=5e-11 Score=94.29 Aligned_cols=77 Identities=27% Similarity=0.436 Sum_probs=67.8
Q ss_pred CchhhhcCCCccEEEecCChhhHHHHHHcCCCeEecccc---chHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFF---GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~---~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
+...++ +.||++|+++|.+++.||+++|+|+|..|.. .+|..|+..+.+.+.|..+..++.+.++|.++++++++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 455667 7899999999988999999999999999763 47888999999999999998777789999999999998
Q ss_pred CC
Q psy16939 172 DP 173 (174)
Q Consensus 172 ~~ 173 (174)
|+
T Consensus 321 ~~ 322 (348)
T TIGR01133 321 DP 322 (348)
T ss_pred CH
Confidence 75
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.06 E-value=7.5e-10 Score=89.75 Aligned_cols=133 Identities=18% Similarity=0.137 Sum_probs=89.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC----CCcEEEEe-cCCCCccccc----cCC--------------CCCE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL----KLPIFWKI-DITNDPVLNA----KTL--------------PDNV 88 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~----~~~~i~~~-~~~~~~~~~~----~~~--------------~~nv 88 (174)
++++++-.||.... ....+..+++++... +..|++.+ +....+++.+ ... .+++
T Consensus 205 ~~~lllLpGSR~ae---~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 281 (396)
T TIGR03492 205 RFRIALLPGSRPPE---AYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTL 281 (396)
T ss_pred CCEEEEECCCCHHH---HHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCce
Confidence 57888888888542 122234555555443 45788877 4332221110 001 1235
Q ss_pred EEeecCCc-hhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHc----CceeEecCCCCCHHHHH
Q psy16939 89 FIQKWYPQ-TDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR----GYALIEPIQTLTKQSFL 163 (174)
Q Consensus 89 ~~~~~~p~-~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~----G~g~~l~~~~~~~~~l~ 163 (174)
.+..+..+ .+++ ..||++|+.+|..| .|+++.|+|+|++|...+|. |+..+++. |.++.+.. .+.+.+.
T Consensus 282 ~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~ 355 (396)
T TIGR03492 282 EVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAA 355 (396)
T ss_pred EEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHH
Confidence 56566544 4456 78999999999866 99999999999999888887 99888774 77777753 3568999
Q ss_pred HHHHHhhcCC
Q psy16939 164 KNAQTMLNDP 173 (174)
Q Consensus 164 ~al~~ll~~~ 173 (174)
+++.++++|+
T Consensus 356 ~~l~~ll~d~ 365 (396)
T TIGR03492 356 QVVRQLLADP 365 (396)
T ss_pred HHHHHHHcCH
Confidence 9999998774
No 44
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=5.1e-09 Score=71.17 Aligned_cols=113 Identities=17% Similarity=0.248 Sum_probs=78.3
Q ss_pred EEEEcCCCcCCCCCCHHH-HHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeec--CCchhhhcCCCccEEEec
Q psy16939 35 VYMSFGSVVDPTKLSEET-KLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW--YPQTDILAHPNLRLFITH 111 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~-~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~--~p~~~~l~~~~~~~~I~h 111 (174)
+||+.||.... +..-+ ..++.+..+....++|+++|..... ... ..++.+| .+..+-+. ..++++|+|
T Consensus 2 ifVTvGstf~~--f~rlv~k~e~~el~~~i~e~lIvQyGn~d~k-----pva-gl~v~~F~~~~kiQsli-~darIVISH 72 (161)
T COG5017 2 IFVTVGSTFYP--FNRLVLKIEVLELTELIQEELIVQYGNGDIK-----PVA-GLRVYGFDKEEKIQSLI-HDARIVISH 72 (161)
T ss_pred eEEEecCccch--HHHHHhhHHHHHHHHHhhhheeeeecCCCcc-----ccc-ccEEEeechHHHHHHHh-hcceEEEec
Confidence 78999999541 11111 1122222222234899999975533 222 2455555 55555554 367899999
Q ss_pred CChhhHHHHHHcCCCeEeccc--------cchHHHHHHHHHHcCceeEecCCC
Q psy16939 112 GGISSLMEASSLGVPVLGVPF--------FGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 112 gG~~t~~eal~~g~P~i~vP~--------~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
+|.||+..++..++|.|++|. ..+|..-|..+++.+.-+.+.+.+
T Consensus 73 aG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte 125 (161)
T COG5017 73 AGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTE 125 (161)
T ss_pred cCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCc
Confidence 999999999999999999996 468999999999999988886543
No 45
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.92 E-value=2.2e-09 Score=86.79 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC----C-CcEEEEecCCC----Ccccccc-CCCCCEEEeecCCchhhhc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL----K-LPIFWKIDITN----DPVLNAK-TLPDNVFIQKWYPQTDILA 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~----~-~~~i~~~~~~~----~~~~~~~-~~~~nv~~~~~~p~~~~l~ 101 (174)
+++|++..||.... .......+++++... + .++++...... ..++.+. .....+....+ +...++
T Consensus 191 ~~~Ilvl~GSR~ae---i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l- 265 (385)
T TIGR00215 191 GETLALLPGSRGSE---VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG-DARKAM- 265 (385)
T ss_pred CCEEEEECCCCHHH---HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc-hHHHHH-
Confidence 57788888888641 133445555444332 2 24555443321 1111110 11223333322 233456
Q ss_pred CCCccEEEecCChhhHHHHHHcCCCeEec----cccc---------hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHH
Q psy16939 102 HPNLRLFITHGGISSLMEASSLGVPVLGV----PFFG---------DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQT 168 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~~g~P~i~v----P~~~---------dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ 168 (174)
..||++|+.+|..|+ |+++.|+|+|++ |+.. .|..|+..+.+.++...+..++++++.|.+++.+
T Consensus 266 -~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ 343 (385)
T TIGR00215 266 -FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLL 343 (385)
T ss_pred -HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHH
Confidence 789999999999888 999999999999 7642 2788999999999999988888999999999999
Q ss_pred hhcCC
Q psy16939 169 MLNDP 173 (174)
Q Consensus 169 ll~~~ 173 (174)
+++|+
T Consensus 344 ll~~~ 348 (385)
T TIGR00215 344 LLENG 348 (385)
T ss_pred HhcCC
Confidence 99886
No 46
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.63 E-value=6.1e-08 Score=77.79 Aligned_cols=135 Identities=14% Similarity=0.069 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCCC-ccccc--cCC-CCCEEEeecCCchhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITND-PVLNA--KTL-PDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~~-~~~~~--~~~-~~nv~~~~~~p~~~~l~~ 102 (174)
+++|++..||.... .+.....++++++.. +.++++..++... .++.+ ... .-++.+.. -.-..++
T Consensus 186 ~~~il~~~gsr~~~---~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-- 259 (380)
T PRK00025 186 ARVLALLPGSRGQE---IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD-GQKREAM-- 259 (380)
T ss_pred CCEEEEECCCCHHH---HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc-ccHHHHH--
Confidence 45667777766431 112344445544322 2367776552221 11111 012 22344332 1234455
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEecccc--------chHHHH-----HHHHHHcCceeEecCCCCCHHHHHHHHHHh
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGVPFF--------GDQYRN-----MVLLRHRGYALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~--------~dQ~~n-----a~~l~~~G~g~~l~~~~~~~~~l~~al~~l 169 (174)
..||++|+.+|.+++ |++++|+|+|++|.. .+|..| +..+.+.+++..+...+.+++++.+++.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 789999999998877 999999999999532 133332 233444444444555667899999999999
Q ss_pred hcCC
Q psy16939 170 LNDP 173 (174)
Q Consensus 170 l~~~ 173 (174)
++|+
T Consensus 339 l~~~ 342 (380)
T PRK00025 339 LADG 342 (380)
T ss_pred hcCH
Confidence 9875
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.59 E-value=1.9e-06 Score=67.55 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCccccccCCCCCEEEeecCCchh---hhcCCCccE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD---ILAHPNLRL 107 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---~l~~~~~~~ 107 (174)
++.+++..|+.... -..+.+-+++..+... +.++++...+.....+. ....|+.+.+++++.+ ++ ..+|+
T Consensus 196 ~~~~i~~~G~~~~~--k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~--~~~d~ 269 (364)
T cd03814 196 DRPVLLYVGRLAPE--KNLEALLDADLPLRRRPPVRLVIVGDGPARARLE--ARYPNVHFLGFLDGEELAAAY--ASADV 269 (364)
T ss_pred CCeEEEEEeccccc--cCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHh--ccCCcEEEEeccCHHHHHHHH--HhCCE
Confidence 46677788876531 1233333444444332 34566655433322111 3467899999988665 45 78999
Q ss_pred EEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 108 FITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 108 ~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|..+. .+++.||+++|+|+|+-+..+ +...+++.+.|..+... +.+++.+++.+++.++
T Consensus 270 ~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 270 FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPG--DAEAFAAALAALLADP 333 (364)
T ss_pred EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCC--CHHHHHHHHHHHHcCH
Confidence 997764 478999999999999987654 44556667888887543 6788999999998875
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.49 E-value=2.5e-06 Score=70.62 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC-CCccEEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH-PNLRLFI 109 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~-~~~~~~I 109 (174)
...+++..|+... ...++.++++++..+ .++++...+....++.+.....++.+.++++..++..+ ..+|++|
T Consensus 262 ~~~~i~~vGrl~~-----~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V 336 (465)
T PLN02871 262 EKPLIVYVGRLGA-----EKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFV 336 (465)
T ss_pred CCeEEEEeCCCch-----hhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEE
Confidence 3566777788753 445667777777764 46666554432222211112357999999976553221 7899999
Q ss_pred ecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHH---cCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 110 THGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH---RGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 110 ~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~---~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.-.. ..++.||+++|+|+|.-...+ ....+++ -+.|..++.+ +.+++.+++.++++|+
T Consensus 337 ~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 337 MPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADP 401 (465)
T ss_pred ECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 6543 456899999999999875432 2234444 5788888654 6799999999998764
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.39 E-value=6.5e-06 Score=65.82 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCCCcc---------c-cccCCCCCEEEeecCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITNDPV---------L-NAKTLPDNVFIQKWYPQ 96 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~~~~---------~-~~~~~~~nv~~~~~~p~ 96 (174)
.+.+++..|+..... . ...+++++... +.++++..+...... + .+....+++.+.+++|+
T Consensus 219 ~~~~i~~~gr~~~~k--~---~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 293 (398)
T cd03800 219 DKPRILAVGRLDPRK--G---IDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSR 293 (398)
T ss_pred CCcEEEEEccccccc--C---HHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCH
Confidence 467778888875421 2 33334444332 346666655432110 0 11134578999999997
Q ss_pred hhhhcC-CCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 97 TDILAH-PNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 97 ~~~l~~-~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
.++... ..+|++++. |-..++.||+++|+|+|+-+..+ ....+++.+.|..++.. +.+++.+++.++++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHHHh
Confidence 764221 679999965 33468999999999999876543 44456666789888644 58999999999987
Q ss_pred CC
Q psy16939 172 DP 173 (174)
Q Consensus 172 ~~ 173 (174)
++
T Consensus 368 ~~ 369 (398)
T cd03800 368 DP 369 (398)
T ss_pred CH
Confidence 64
No 50
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.37 E-value=6e-06 Score=65.72 Aligned_cols=130 Identities=20% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEe--cCCCCcccc---c-cCC-CCCEEEeecCCchh---hh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKI--DITNDPVLN---A-KTL-PDNVFIQKWYPQTD---IL 100 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~--~~~~~~~~~---~-~~~-~~nv~~~~~~p~~~---~l 100 (174)
++.+++++|..... .....+..++++++.... ++.+.. .+....++. . ... .+++.+.++.++.+ ++
T Consensus 198 ~~~vlv~~~r~~~~--~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 198 KKYILVTLHRVENV--DDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCEEEEEeCCcccc--CChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHH
Confidence 56788888776531 135567777777776533 233333 222111111 1 011 46888887655443 34
Q ss_pred cCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 101 AHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
..||++|+..| +.+.|+++.|+|+|.++.. |. +..+.+.|+++.+.. +.+++.+++.++++++
T Consensus 276 --~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 --KNADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred --HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEecCC---CHHHHHHHHHHHhcCc
Confidence 67999999999 7888999999999999643 22 335566787777642 4899999999999875
No 51
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.35 E-value=4.1e-06 Score=65.88 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCcccc----ccCCCCCEEEeecCCchhhhcC-CCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPVLN----AKTLPDNVFIQKWYPQTDILAH-PNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~----~~~~~~nv~~~~~~p~~~~l~~-~~~ 105 (174)
.+.+++..|.... ......+++++.+.. .++++...+.....+. .....+|+.+.+++++.++..+ ..|
T Consensus 190 ~~~~i~~~G~~~~-----~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~a 264 (357)
T cd03795 190 GRPFFLFVGRLVY-----YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAAC 264 (357)
T ss_pred CCcEEEEeccccc-----ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhC
Confidence 4677888888753 334666777777666 5666655443211110 1145679999999997542221 679
Q ss_pred cEEEec------CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 106 RLFITH------GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 106 ~~~I~h------gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|+++.- |...++.||+++|+|+|.-...+....... ..+.|..++.+ +.+++.+++.++++++
T Consensus 265 d~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~--d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 265 DVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPPG--DPAALAEAIRRLLEDP 333 (357)
T ss_pred CEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCCC--CHHHHHHHHHHHHHCH
Confidence 998832 224579999999999999765444332222 35778777543 6899999999999875
No 52
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.33 E-value=2.6e-06 Score=67.51 Aligned_cols=128 Identities=18% Similarity=0.087 Sum_probs=88.0
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC-CCccEEEecC
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH-PNLRLFITHG 112 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~-~~~~~~I~hg 112 (174)
..++..|.... ....+.++++++..+.++++...+....++.+ ...+|+.+.+++|+.++... ..||+++.-.
T Consensus 196 ~~il~~G~~~~-----~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps 269 (351)
T cd03804 196 DYYLSVGRLVP-----YKRIDLAIEAFNKLGKRLVVIGDGPELDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPA 269 (351)
T ss_pred CEEEEEEcCcc-----ccChHHHHHHHHHCCCcEEEEECChhHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECC
Confidence 34566777653 33467778888888888777665543232222 45789999999997543221 6799998632
Q ss_pred ---ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 113 ---GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 113 ---G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
-..++.||+++|+|+|.....+ ....+.+...|..++.+ +.+++.+++.++++++
T Consensus 270 ~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 270 EEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred cCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 2356789999999999986433 22345555678888644 6888999999999876
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.30 E-value=7.7e-06 Score=64.23 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCccccc---cCCCCCEEEeecCCchhhhcC-CCcc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVLNA---KTLPDNVFIQKWYPQTDILAH-PNLR 106 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~---~~~~~nv~~~~~~p~~~~l~~-~~~~ 106 (174)
++.+++..|+.... -..+.+-+.+..+... +.++++...+.....+.+ ....+|+.+.+++++.++... ..+|
T Consensus 219 ~~~~i~~~G~~~~~--k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 296 (394)
T cd03794 219 DKFVVLYAGNIGRA--QGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAAD 296 (394)
T ss_pred CcEEEEEecCcccc--cCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhC
Confidence 56778888887542 1233333333444333 345555443332221111 134578999999876653221 7799
Q ss_pred EEEecCC---------hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 107 LFITHGG---------ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 107 ~~I~hgG---------~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++|.... .+++.||+++|+|+|+-+..+.+.. +...+.|..++.+ +.+++.+++.++++|+
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLVVPPG--DPEALAAAILELLDDP 366 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceEeCCC--CHHHHHHHHHHHHhCh
Confidence 9996433 3347999999999999987654332 2333677777543 6899999999998764
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.26 E-value=1.5e-05 Score=61.89 Aligned_cols=131 Identities=21% Similarity=0.218 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCCCcccc----ccCCCCCEEEeecCCchhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITNDPVLN----AKTLPDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~~~~~~----~~~~~~nv~~~~~~p~~~~l~~ 102 (174)
++..++.+|+... ......+++++... ..++++..++.....+. .....+++.+.++++..++...
T Consensus 198 ~~~~i~~~g~~~~-----~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 272 (374)
T cd03801 198 DEPVILFVGRLVP-----RKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPAL 272 (374)
T ss_pred CCeEEEEecchhh-----hcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHH
Confidence 4677888887753 22233444444332 23555544332211111 1135789999999975543211
Q ss_pred -CCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 103 -PNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 103 -~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
..+|++|.- |..+++.||+++|+|+|+-+.. .....+++.+.|..++.. +.+++.+++.++++++
T Consensus 273 ~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~----~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 273 YAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG----GIPEVVEDGETGLLVPPG--DPEALAEAILRLLDDP 342 (374)
T ss_pred HHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC----ChhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcCh
Confidence 779999953 5577999999999999987652 344555556788887543 5899999999988765
No 55
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.25 E-value=3.7e-05 Score=59.90 Aligned_cols=134 Identities=19% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCccc----cccCCCCCEEEeecCCchhhhcC-CC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQTDILAH-PN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~~~~l~~-~~ 104 (174)
.+.+++..|+.... -..+.+-+.++.+.+. +.++++...+.....+ ......+|+.+.+++++.++... .+
T Consensus 201 ~~~~i~~~g~~~~~--k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 278 (377)
T cd03798 201 DKKVILFVGRLVPR--KGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAA 278 (377)
T ss_pred CceEEEEeccCccc--cCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHh
Confidence 56778888887541 1223333333333332 2344444332221111 11134679999999987653221 77
Q ss_pred ccEEEe----cCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFIT----HGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~----hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
||++|. -|..+++.||+++|+|+|+-+..+ ....+.+.+.|..++.. +.+++.+++.++++++
T Consensus 279 ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 279 ADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPG--DPEALAEAILRLLADP 345 (377)
T ss_pred cCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCC--CHHHHHHHHHHHhcCc
Confidence 999984 356788999999999999866533 33456666667777543 6899999999998875
No 56
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.22 E-value=2.8e-05 Score=60.72 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC---CCcEEEEecCCCCcccc-ccCCCCCEEEeecCCchhhhcC-CCcc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL---KLPIFWKIDITNDPVLN-AKTLPDNVFIQKWYPQTDILAH-PNLR 106 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~---~~~~i~~~~~~~~~~~~-~~~~~~nv~~~~~~p~~~~l~~-~~~~ 106 (174)
.+.+++..|+.... .....+++++... +.++++........... ......++.+.+++++.++... .++|
T Consensus 190 ~~~~i~~~G~~~~~-----k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 264 (359)
T cd03823 190 GRLRFGFIGQLTPH-----KGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEID 264 (359)
T ss_pred CceEEEEEecCccc-----cCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 56777788887542 2233344444333 44666654443222110 0023578999999975554211 7899
Q ss_pred EEEec-----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 107 LFITH-----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 107 ~~I~h-----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++|.. |...++.||+++|+|+|.-+..+ ....+.+.+.|..+... +.+++.+++.++++++
T Consensus 265 ~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 265 VLVVPSIWPENFPLVIREALAAGVPVIASDIGG----MAELVRDGVNGLLFPPG--DAEDLAAALERLIDDP 330 (359)
T ss_pred EEEEcCcccCCCChHHHHHHHCCCCEEECCCCC----HHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhCh
Confidence 99943 34457999999999999876532 44556666678888654 5899999999998764
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.21 E-value=1.8e-05 Score=62.01 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhh--CCCcEEEEecCCCCccc----cccCCCCCEEEeecCCchhhhcC-CC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQ--LKLPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQTDILAH-PN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~--~~~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~~~~l~~-~~ 104 (174)
++.+++..|+.... -..+.+-+++..+.. .+.++++..++.....+ ......+++.+.+++++.++... ..
T Consensus 201 ~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 278 (374)
T cd03817 201 DEPVLLYVGRLAKE--KNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKA 278 (374)
T ss_pred CCeEEEEEeeeecc--cCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHH
Confidence 46777888876542 123333333333333 23466665544321111 11145679999999987653221 67
Q ss_pred ccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|+++... ...++.||+++|+|+|+.+.. ..+..+.+.+.|..++..+ . ++.+++.++++++
T Consensus 279 ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~ 344 (374)
T cd03817 279 ADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDP 344 (374)
T ss_pred cCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCCCC--H-HHHHHHHHHHhCh
Confidence 99999554 357899999999999987543 2445566667888886543 2 8999999998775
No 58
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.18 E-value=2.5e-05 Score=62.55 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCC-Ccc-ccc-cCCCCCEEEeecCCchhhhc-CC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITN-DPV-LNA-KTLPDNVFIQKWYPQTDILA-HP 103 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~-~~~-~~~-~~~~~nv~~~~~~p~~~~l~-~~ 103 (174)
+.++++++-... ....+..+++++... +.++++..+++. ... +.+ ....+++++.+.+++.+.+. ..
T Consensus 198 ~~vl~~~hr~~~----~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 273 (365)
T TIGR00236 198 RYILLTLHRREN----VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAA 273 (365)
T ss_pred CEEEEecCchhh----hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHH
Confidence 556665543211 112356666665543 345666544321 111 111 12346899988776554321 16
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.+|++|+..|. .+.||+++|+|+|.++..+++.. +.+.|.++.+. .+.+++.+++.++++++
T Consensus 274 ~ad~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 274 NSHLILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAKRLLTDP 335 (365)
T ss_pred hCCEEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHHHHHhCh
Confidence 79999998875 47999999999999976554442 33467776663 26899999999998764
No 59
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.13 E-value=0.0001 Score=57.66 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCC-cc-c----cccCCCCCEEEeecCCchhhhc-C
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITND-PV-L----NAKTLPDNVFIQKWYPQTDILA-H 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~-~~-~----~~~~~~~nv~~~~~~p~~~~l~-~ 102 (174)
++.+++..|+..... ..+.+-+.+..+... +.++++...+... .. . ......+++.+.+++++.++.. +
T Consensus 202 ~~~~i~~~G~~~~~K--~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 202 DKRIILFLGRLHPKK--GLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCcEEEEEeCcchhc--CHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 567778888775321 222232333333332 2355554332221 10 0 1114568899999998655321 1
Q ss_pred CCccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 103 PNLRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 103 ~~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
..+|++|...- ..++.||+++|+|+|+-+..+ ....+.. +.|..... +.+++.+++.++++++
T Consensus 280 ~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 280 ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALELP 346 (375)
T ss_pred hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHhCH
Confidence 67999987543 678999999999999976433 2333444 77777753 3489999999998774
No 60
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.10 E-value=2.9e-05 Score=61.49 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCCEEEeecCCchhhhcC-CCccEEEecC----------ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEe
Q psy16939 84 LPDNVFIQKWYPQTDILAH-PNLRLFITHG----------GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIE 152 (174)
Q Consensus 84 ~~~nv~~~~~~p~~~~l~~-~~~~~~I~hg----------G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l 152 (174)
..+++.+.+++++.++... ..+|++|... -.+++.||+++|+|+|.-+..+ +...+.+.+.|..+
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~~ 318 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLLV 318 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEEE
Confidence 4678999999986554221 7799988633 3578999999999999876543 55666677888888
Q ss_pred cCCCCCHHHHHHHHHHhhcCC
Q psy16939 153 PIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 153 ~~~~~~~~~l~~al~~ll~~~ 173 (174)
+.. +.+++.+++.++++++
T Consensus 319 ~~~--d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 319 PEG--DVAALAAALGRLLADP 337 (367)
T ss_pred CCC--CHHHHHHHHHHHHcCH
Confidence 643 6799999999998874
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.10 E-value=0.00011 Score=56.87 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCccc-----cccCCCCCEEEeecCCch-hhhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPVL-----NAKTLPDNVFIQKWYPQT-DILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~-----~~~~~~~nv~~~~~~p~~-~~l~~~ 103 (174)
++.+++..|+.... -..+.+-+.+..+.+. +.++++..+....... .......++.+.++..+. .++ .
T Consensus 187 ~~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~ 262 (359)
T cd03808 187 DDPVFLFVARLLKD--KGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELL--A 262 (359)
T ss_pred CCcEEEEEeccccc--cCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHH--H
Confidence 56788888887542 1333344444444332 2456655444322111 111345688888875443 355 7
Q ss_pred CccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 104 NLRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 104 ~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++|++|.... .+++.||+++|+|+|.-+..+ ....+.+.+.|..++.+ +.+++.+++.+++.++
T Consensus 263 ~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 263 AADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--DAEALADAIERLIEDP 330 (359)
T ss_pred hccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--CHHHHHHHHHHHHhCH
Confidence 8999997654 678999999999999875533 23455556778887543 6899999999988764
No 62
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.10 E-value=0.00013 Score=57.42 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=81.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcc----ccccCCCCCEEEeecCCc-hhhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQ-TDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~-~~~l~~~~ 104 (174)
.+.+++..|+..... ..+.+-+.+..+.+. +.++++...+..... ..+....+++.+.++..+ ..++ ..
T Consensus 191 ~~~~i~~vGr~~~~K--g~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 266 (358)
T cd03812 191 DKFVIGHVGRFSEQK--NHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELL--QA 266 (358)
T ss_pred CCEEEEEEecccccc--ChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHH--Hh
Confidence 567888888875421 233333333333332 235566543332211 111145678999998544 3455 78
Q ss_pred ccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 105 LRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 105 ~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
||++|.- |-..++.||+++|+|+|.-...+. ...+.+ +.+.....+ +.+++.+++.++++++.
T Consensus 267 adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~~~--~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 267 MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSLDE--SPEIWAEEILKLKSEDR 333 (358)
T ss_pred cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeCCC--CHHHHHHHHHHHHhCcc
Confidence 9999975 446899999999999998654332 233344 555554322 57999999999998863
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.09 E-value=5.5e-05 Score=59.38 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcc----ccccCCCCCEEEeecCCchhhhcC-CC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTDILAH-PN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~~l~~-~~ 104 (174)
.++.++..|..... -..+.+-+.+..+... +.++++...+..... +.+...++|+.+.+++++.++... ..
T Consensus 178 ~~~~i~~~g~~~~~--k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ 255 (355)
T cd03799 178 EPLRILSVGRLVEK--KGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRA 255 (355)
T ss_pred CCeEEEEEeeeccc--cCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh
Confidence 46677778876431 1233333333444333 235555544332221 111135689999999976553322 67
Q ss_pred ccEEEe----------cCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFIT----------HGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~----------hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|+++. -|...++.||+++|+|+|+.+..+ ....+.+...|..+... +.+++.+++.++++++
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPPG--DPEALADAIERLLDDP 328 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 999998 455679999999999999876432 22344444578887543 6899999999988764
No 64
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.07 E-value=0.00011 Score=59.36 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCCEEEeecCCchhhhcC-CCccEEEecC----C-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCC
Q psy16939 84 LPDNVFIQKWYPQTDILAH-PNLRLFITHG----G-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTL 157 (174)
Q Consensus 84 ~~~nv~~~~~~p~~~~l~~-~~~~~~I~hg----G-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~ 157 (174)
...++.+.+++++.++..+ ..+|++|... | ..++.||+++|+|+|+-...+ +...+++...|..+.. ..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~-~~ 329 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAE-PM 329 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeC-CC
Confidence 4568899999886553221 7899999743 2 367889999999999876532 3344555566764421 23
Q ss_pred CHHHHHHHHHHhhcCC
Q psy16939 158 TKQSFLKNAQTMLNDP 173 (174)
Q Consensus 158 ~~~~l~~al~~ll~~~ 173 (174)
+.+++.+++.++++|+
T Consensus 330 d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 330 TSDSIISDINRTLADP 345 (380)
T ss_pred CHHHHHHHHHHHHcCH
Confidence 6899999999999875
No 65
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.05 E-value=1.1e-05 Score=64.33 Aligned_cols=128 Identities=19% Similarity=0.091 Sum_probs=80.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC---cEEEEecCCCCcccccc-CCCCCEEEeecCCchhhhcCCCccE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL---PIFWKIDITNDPVLNAK-TLPDNVFIQKWYPQTDILAHPNLRL 107 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~---~~i~~~~~~~~~~~~~~-~~~~nv~~~~~~p~~~~l~~~~~~~ 107 (174)
+++|.+-.||.... -...+..+.+++..... .|++... ...+.+.+. .....+.+.+ +..+++ ..||+
T Consensus 167 ~~~I~llPGSR~~E---i~~llP~~~~aa~~L~~~~~~~~i~~a-~~~~~i~~~~~~~~~~~~~~--~~~~~m--~~aDl 238 (347)
T PRK14089 167 EGTIAFMPGSRKSE---IKRLMPIFKELAKKLEGKEKILVVPSF-FKGKDLKEIYGDISEFEISY--DTHKAL--LEAEF 238 (347)
T ss_pred CCEEEEECCCCHHH---HHHHHHHHHHHHHHHhhcCcEEEEeCC-CcHHHHHHHHhcCCCcEEec--cHHHHH--HhhhH
Confidence 47899999998641 12445544444443332 3333322 221211110 0111233332 334566 67999
Q ss_pred EEecCChhhHHHHHHcCCCeEec-cccchHHHHHHHHH---HcCceeEe-------------cCCCCCHHHHHHHHHH
Q psy16939 108 FITHGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLLR---HRGYALIE-------------PIQTLTKQSFLKNAQT 168 (174)
Q Consensus 108 ~I~hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l~---~~G~g~~l-------------~~~~~~~~~l~~al~~ 168 (174)
+|+.+|..|+ |++..|+|+|+. .....|+.||+++. ..|+.-.+ -.++.|++.|.+++.+
T Consensus 239 al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~ 315 (347)
T PRK14089 239 AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE 315 (347)
T ss_pred HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH
Confidence 9999999888 999999999995 34678999999999 55666555 3356888888888764
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.04 E-value=0.00028 Score=57.66 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=60.3
Q ss_pred CEEEeecCCch-hhhcCCCccEEEec-----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHH
Q psy16939 87 NVFIQKWYPQT-DILAHPNLRLFITH-----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQ 160 (174)
Q Consensus 87 nv~~~~~~p~~-~~l~~~~~~~~I~h-----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~ 160 (174)
++.+.+..... .++ ..||+++.. +|..++.||+++|+|+|.-|...++......+.+.|+++... +.+
T Consensus 303 ~v~l~~~~~el~~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~ 376 (425)
T PRK05749 303 DVLLGDTMGELGLLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAE 376 (425)
T ss_pred cEEEEecHHHHHHHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHH
Confidence 44555544333 344 789985542 455679999999999999998888888777777778777653 679
Q ss_pred HHHHHHHHhhcCC
Q psy16939 161 SFLKNAQTMLNDP 173 (174)
Q Consensus 161 ~l~~al~~ll~~~ 173 (174)
++.+++.++++|+
T Consensus 377 ~La~~l~~ll~~~ 389 (425)
T PRK05749 377 DLAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHHhcCH
Confidence 9999999999875
No 67
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.00 E-value=0.00015 Score=57.48 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc----ccccCCCCCEEEeecCCchh-hhcCCCcc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTD-ILAHPNLR 106 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~-~l~~~~~~ 106 (174)
.+.+++..|...... ....+++.+.....+.+.++++...+..... ..+....+++.+.++.+... ++ ..+|
T Consensus 196 ~~~~il~~g~l~~~K-~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d 272 (371)
T cd04962 196 GEKVLIHISNFRPVK-RIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELL--SIAD 272 (371)
T ss_pred CCeEEEEeccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHH--HhcC
Confidence 466777788775421 1222232222222223456666554432211 11113456899999876543 45 7799
Q ss_pred EEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 107 LFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 107 ~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++|.- |...++.||+++|+|+|+-... ..+..+.+-..|..++.+ +.+++.+++.++++++
T Consensus 273 ~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 273 LFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDD 337 (371)
T ss_pred EEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCH
Confidence 99944 4456999999999999986543 244555555677776543 6788999999888764
No 68
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.96 E-value=0.00016 Score=58.79 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC---C-CcEEEEecCCCCcccc---ccCCCCCEEEeecCCchhhhcC-C
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL---K-LPIFWKIDITNDPVLN---AKTLPDNVFIQKWYPQTDILAH-P 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~---~-~~~i~~~~~~~~~~~~---~~~~~~nv~~~~~~p~~~~l~~-~ 103 (174)
.+.+++..|+... ..-++.++++++.. + .++++...+...+++. +....+|+.+.++++..++..+ .
T Consensus 228 ~~~~i~~~G~l~~-----~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~ 302 (412)
T PRK10307 228 GKKIVLYSGNIGE-----KQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLK 302 (412)
T ss_pred CCEEEEEcCcccc-----ccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHH
Confidence 4567777888753 23345555555443 2 3565544333222111 1012248999999986653221 6
Q ss_pred CccEEEec---CC-----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 104 NLRLFITH---GG-----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 104 ~~~~~I~h---gG-----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.||+++.. ++ .+.+.|++++|+|+|.-...+.. ....+. +.|+.++.+ +.+++.+++.++++|+
T Consensus 303 ~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 303 MADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE--SVEALVAAIAALARQA 374 (412)
T ss_pred hcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC--CHHHHHHHHHHHHhCH
Confidence 78876542 22 23468999999999998653321 112222 678887644 6899999999998764
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.95 E-value=0.00021 Score=55.57 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=77.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCcc---c-c-ccCCCCCEEEeecCCch-hhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPV---L-N-AKTLPDNVFIQKWYPQT-DILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~---~-~-~~~~~~nv~~~~~~p~~-~~l~~~~ 104 (174)
++.+++..|+..... ....+++.+....... +.++++...+..... . . ......++.+.+..+.. .++ ..
T Consensus 192 ~~~~i~~~G~~~~~K-~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 268 (365)
T cd03807 192 DTFLIGIVARLHPQK-DHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALL--NA 268 (365)
T ss_pred CCeEEEEecccchhc-CHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHH--Hh
Confidence 466777888875421 1122222222222222 345666543322111 1 1 11345677777765443 455 77
Q ss_pred ccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|+++.... .+++.||+++|+|+|+-...+ +...+.+ .|..++.+ +.+++.+++.++++++
T Consensus 269 adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 269 LDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--DPEALAEAIEALLADP 333 (365)
T ss_pred CCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhCh
Confidence 999997654 479999999999999865433 3334444 56666543 5889999999998764
No 70
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.93 E-value=0.00012 Score=59.67 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=81.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhh---CC--CcEEEEecCCCCcc----ccccCCCCCEEEeecCCchhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQ---LK--LPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~---~~--~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~~l~~ 102 (174)
.+..+++.|.... ..-...++++++. .+ .++++...+...++ +.+..+.+++.+.+|+++.++..+
T Consensus 221 ~~~~il~vGrl~~-----~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~ 295 (406)
T PRK15427 221 TPLEIISVARLTE-----KKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAM 295 (406)
T ss_pred CCeEEEEEeCcch-----hcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHH
Confidence 3566777787753 2223334444432 22 35555444432111 111135678999999987764322
Q ss_pred -CCccEEEecC---------C-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 103 -PNLRLFITHG---------G-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 103 -~~~~~~I~hg---------G-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
..+|++|.-. | ..++.||+++|+|+|.-...+ ....+++-..|..++.. +.+++.+++.++++
T Consensus 296 l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~--d~~~la~ai~~l~~ 369 (406)
T PRK15427 296 LDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPEN--DAQALAQRLAAFSQ 369 (406)
T ss_pred HHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCCC--CHHHHHHHHHHHHh
Confidence 7899999642 3 367899999999999865432 23344455678887644 68999999999987
Q ss_pred -CC
Q psy16939 172 -DP 173 (174)
Q Consensus 172 -~~ 173 (174)
|+
T Consensus 370 ~d~ 372 (406)
T PRK15427 370 LDT 372 (406)
T ss_pred CCH
Confidence 64
No 71
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.92 E-value=5.7e-05 Score=59.44 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCccc----cccCCCCCEEEeecCCch-hhhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQT-DILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~~-~~l~~~~~ 105 (174)
++.+++..|+..... .....++.+.....+. +.++++...+....++ .+....+++.+.++..+. .++ ..+
T Consensus 187 ~~~~~l~~g~~~~~k-g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~a 263 (360)
T cd04951 187 DTFVILAVGRLVEAK-DYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYY--NAA 263 (360)
T ss_pred CCEEEEEEeeCchhc-CcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHH--Hhh
Confidence 467788888765321 1223333333322222 3467765544322211 111345789999887543 455 779
Q ss_pred cEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 106 RLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 106 ~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
|++|.-.. ..++.||+++|+|+|+-.. ..+...+++ .|..+.. .+.+++.+++.+++++
T Consensus 264 d~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~--~g~~~~~--~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 264 DLFVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGD--SGLIVPI--SDPEALANKIDEILKM 326 (360)
T ss_pred ceEEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecC--CceEeCC--CCHHHHHHHHHHHHhC
Confidence 99988653 6789999999999997543 233444444 3444433 3688999999998743
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.91 E-value=0.0002 Score=56.12 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCc-c--------ccccCCCCCEEEeec-CCchhhh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDP-V--------LNAKTLPDNVFIQKW-YPQTDIL 100 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~-~--------~~~~~~~~nv~~~~~-~p~~~~l 100 (174)
.+.+++..|+..... ....+++.+.....+. +.++++..+..... . +.+....+++.+.+. ++..++.
T Consensus 184 ~~~~i~~~G~~~~~K-~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYK-GLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCC-CHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 466777778775421 1223333333322222 23555544332111 1 112235678888865 8765432
Q ss_pred cC-CCccEEEec------CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 101 AH-PNLRLFITH------GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 101 ~~-~~~~~~I~h------gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.+ ..+|++|.- |-.+++.||+++|+|+|.-+..+ ...+...+.|..+... +.+++.+++.++++++
T Consensus 263 ~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~--d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 263 ELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG--DPAALAEAIRRLLADP 335 (366)
T ss_pred HHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC--CHHHHHHHHHHHHcCh
Confidence 22 789999943 44568999999999999877543 2334556778877544 5899999999998874
No 73
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.87 E-value=7.3e-05 Score=53.14 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEec-CCC---Ccc-ccccCCCCCEEEeecCCch---h
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKID-ITN---DPV-LNAKTLPDNVFIQKWYPQT---D 98 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~-~~~---~~~-~~~~~~~~nv~~~~~~p~~---~ 98 (174)
++.+++..|.... ......+++++..+ +.-.++.+| ... ... ........++.+.++.+.. .
T Consensus 14 ~~~~il~~g~~~~-----~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (172)
T PF00534_consen 14 KKKIILFIGRLDP-----EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDE 88 (172)
T ss_dssp TSEEEEEESESSG-----GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHH
T ss_pred CCeEEEEEecCcc-----ccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccc
Confidence 6888888888764 22244444444332 222344444 211 010 1111456799999998733 3
Q ss_pred hhcCCCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 99 ILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 99 ~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++ ..+|++++. +...++.||+++|+|+|+-. ...+...+.....|..++.. +.+++.+++.++++++
T Consensus 89 ~~--~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 89 LY--KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN--DIEELADAIEKLLNDP 159 (172)
T ss_dssp HH--HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHHHH
T ss_pred cc--ccceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--CHHHHHHHHHHHHCCH
Confidence 44 669999988 67789999999999999754 33445666666779988654 8899999999998764
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.87 E-value=0.00041 Score=54.64 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCCCEEEeecCC-ch---hhhcCCCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC
Q psy16939 84 LPDNVFIQKWYP-QT---DILAHPNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 84 ~~~nv~~~~~~p-~~---~~l~~~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~ 155 (174)
...++.+.++++ +. .++ ..+|+++... ...++.||+++|+|+|+....+ ....+.+.+.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~~- 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAKP- 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeCC-
Confidence 567889999988 33 345 7799999853 3689999999999999865422 1122333356777653
Q ss_pred CCCHHHHHHHHHHhhcCC
Q psy16939 156 TLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 156 ~~~~~~l~~al~~ll~~~ 173 (174)
.+.+++.+++.++++++
T Consensus 315 -~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 -GDPEDLAEGIEWLLADP 331 (365)
T ss_pred -CCHHHHHHHHHHHHhCH
Confidence 36789999999988765
No 75
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.85 E-value=0.00032 Score=54.13 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcc----ccccCCCCCEEEeecCC-chhhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPV----LNAKTLPDNVFIQKWYP-QTDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p-~~~~l~~~~ 104 (174)
++..++..|+.... -..+.+-+.++.+.+. +.++++...+..... ........++.+.++.. ...++ ..
T Consensus 177 ~~~~i~~~g~~~~~--K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 252 (348)
T cd03820 177 KSKRILAVGRLVPQ--KGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYY--AK 252 (348)
T ss_pred CCcEEEEEEeeccc--cCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHH--Hh
Confidence 45667777776541 1233333333333322 235555443322111 11113456788888743 33455 67
Q ss_pred ccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcC-ceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRG-YALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G-~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
||++|.... ..++.||+++|+|+|+-+..+.+. .+.+.+ .|..++.. +.+++.+++.++++|+
T Consensus 253 ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~~--~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 253 ASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPNG--DVEALAEALLRLMEDE 320 (348)
T ss_pred CCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCCC--CHHHHHHHHHHHHcCH
Confidence 999997753 578999999999999876544332 233444 78877543 5799999999998875
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.85 E-value=0.00024 Score=56.71 Aligned_cols=133 Identities=12% Similarity=0.153 Sum_probs=83.0
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC--CcEEEEecCCCCccc----cccCCCCCEEEeecCCc--hhhhc-CC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK--LPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQ--TDILA-HP 103 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~--~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~--~~~l~-~~ 103 (174)
+.+++..|..... ....+..+++++.... .++++...+...+++ .+..+++++.+.++.++ ..+-. +.
T Consensus 180 ~~~i~~~Grl~~~---~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~ 256 (359)
T PRK09922 180 PAVFLYVGRLKFE---GQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK 256 (359)
T ss_pred CcEEEEEEEEecc---cCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh
Confidence 5667777775421 1122455666665543 466665544332211 11135679999999754 22211 15
Q ss_pred CccEEEec----CChhhHHHHHHcCCCeEecc-ccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 104 NLRLFITH----GGISSLMEASSLGVPVLGVP-FFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 104 ~~~~~I~h----gG~~t~~eal~~g~P~i~vP-~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
.+|++|.. |-..++.||+++|+|+|... ..+ ....+++...|..++.. +.+++.+++.+++++++
T Consensus 257 ~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~--d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 257 NVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG--NIDEFVGKLNKVISGEV 326 (359)
T ss_pred cCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC--CHHHHHHHHHHHHhCcc
Confidence 68999864 33689999999999999874 322 22345555678777543 78999999999998863
No 77
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.84 E-value=0.00071 Score=54.03 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCCCccc----cccCCCCCEEEeecCCc-hhhhc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQ-TDILA 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~-~~~l~ 101 (174)
.+.++++.|...... ....+++.+.+.+.+. +.++++...+....++ .+.....++.+.++..+ ..++
T Consensus 193 ~~~~i~~vGrl~~~K-g~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~- 270 (374)
T TIGR03088 193 ESVVVGTVGRLQAVK-DQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALM- 270 (374)
T ss_pred CCeEEEEEecCCccc-CHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHH-
Confidence 467888888876421 2233444444444333 2356665443321111 11134456777776543 3455
Q ss_pred CCCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 102 HPNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 102 ~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
..+|++|.- |-..++.||+++|+|+|+-...+ +...+++-..|..++.+ +.+++.+++.++++++
T Consensus 271 -~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~--d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 271 -QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDP 339 (374)
T ss_pred -HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 779999953 44679999999999999976533 34445555667777543 6789999999988764
No 78
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.82 E-value=0.00073 Score=54.60 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=60.8
Q ss_pred CCCCCEEEeecCCchh---hhcCCCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC
Q psy16939 83 TLPDNVFIQKWYPQTD---ILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~---~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~ 155 (174)
...+++.+.++++..+ ++ ..+|+++.- |...++.||+++|+|+|.....+ ....+.+...|..++..
T Consensus 280 ~l~~~v~~~g~~~~~~~~~~l--~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~ 353 (405)
T TIGR03449 280 GIADRVRFLPPRPPEELVHVY--RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH 353 (405)
T ss_pred CCCceEEECCCCCHHHHHHHH--HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC
Confidence 3457899999987654 45 779998853 33468999999999999875433 22345555678877543
Q ss_pred CCCHHHHHHHHHHhhcCC
Q psy16939 156 TLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 156 ~~~~~~l~~al~~ll~~~ 173 (174)
+.+++.+++.++++++
T Consensus 354 --d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 354 --DPADWADALARLLDDP 369 (405)
T ss_pred --CHHHHHHHHHHHHhCH
Confidence 6789999999988764
No 79
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.77 E-value=0.00047 Score=54.03 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC--CcEEEEecCCCCcc-cc----ccCCCCCEEEeecCCchhhhcC-C
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK--LPIFWKIDITNDPV-LN----AKTLPDNVFIQKWYPQTDILAH-P 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~--~~~i~~~~~~~~~~-~~----~~~~~~nv~~~~~~p~~~~l~~-~ 103 (174)
.+.+++..|+..... ..+.+-+.+..+.... .++++......... .. +....+++.+.+++++.++..+ .
T Consensus 194 ~~~~i~~~G~~~~~K--~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 271 (365)
T cd03809 194 PRPYFLYVGTIEPRK--NLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYR 271 (365)
T ss_pred CCCeEEEeCCCcccc--CHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHh
Confidence 456777788875421 2233333333333332 35555443322111 10 1246789999999987653221 6
Q ss_pred CccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 104 NLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 104 ~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.+|+++.. |...++.||+++|+|+|+-...+- ...+. ..|..+... +.+++.+++.++++|+
T Consensus 272 ~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~~~--~~~~~~~~~--~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 272 GARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSL----PEVAG--DAALYFDPL--DPEALAAAIERLLEDP 337 (365)
T ss_pred hhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCc----cceec--CceeeeCCC--CHHHHHHHHHHHhcCH
Confidence 78888754 345689999999999998644211 11111 235555433 6899999999988764
No 80
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.77 E-value=0.00071 Score=54.44 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC-CCccEEEe
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH-PNLRLFIT 110 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~-~~~~~~I~ 110 (174)
+++++..|+... ....+.+.++++ .. +.++++....+...+.......+|+++.+++|+.++..+ ..+|++|.
T Consensus 205 ~~~i~y~G~l~~--~~d~~ll~~la~---~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~ 279 (373)
T cd04950 205 RPVIGYYGAIAE--WLDLELLEALAK---ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAIL 279 (373)
T ss_pred CCEEEEEecccc--ccCHHHHHHHHH---HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEec
Confidence 556777788764 123344444333 33 346666554312111111122479999999987764332 67898875
Q ss_pred c--------CC-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 111 H--------GG-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 111 h--------gG-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
- ++ ...+.|++++|+|+|.-+.. ...+..+.++.+. + +.+++.+++++++.+
T Consensus 280 P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~-~--d~~~~~~ai~~~l~~ 340 (373)
T cd04950 280 PFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIA-D--DPEEFVAAIEKALLE 340 (373)
T ss_pred CCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcEEEeC-C--CHHHHHHHHHHHHhc
Confidence 3 22 34699999999999987632 1222233333332 2 689999999997654
No 81
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.75 E-value=0.00052 Score=55.52 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=60.1
Q ss_pred CCCEEEeecCCchhhhcC-CCccEEEecC---C-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCH
Q psy16939 85 PDNVFIQKWYPQTDILAH-PNLRLFITHG---G-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTK 159 (174)
Q Consensus 85 ~~nv~~~~~~p~~~~l~~-~~~~~~I~hg---G-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~ 159 (174)
.+++.+.+++|+.++..+ ..+|+++.-. | ..++.||+++|+|+|.-... .....+..-..|..++.. +.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~--d~ 353 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF--DP 353 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--CH
Confidence 468999999987664321 6789888532 2 34799999999999986442 334455555578877543 58
Q ss_pred HHHHHHHHHhhcCC
Q psy16939 160 QSFLKNAQTMLNDP 173 (174)
Q Consensus 160 ~~l~~al~~ll~~~ 173 (174)
+++.+++.++++++
T Consensus 354 ~~la~~i~~ll~~~ 367 (396)
T cd03818 354 DALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHHHhCH
Confidence 99999999999875
No 82
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.72 E-value=0.002 Score=50.60 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCccc--------cccCCCCCEEEeecCCch-hhh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPVL--------NAKTLPDNVFIQKWYPQT-DIL 100 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~--------~~~~~~~nv~~~~~~p~~-~~l 100 (174)
...+++..|..... -..+.+-+.+..+... +.++++...+...... .+....+++.+.++.+.. .++
T Consensus 184 ~~~~i~~~Gr~~~~--Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l 261 (355)
T cd03819 184 GKPVILLPGRLTRW--KGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAY 261 (355)
T ss_pred CceEEEEeeccccc--cCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHH
Confidence 46677777876532 2344444445555443 3455555443221111 111345789999985443 345
Q ss_pred cCCCccEEEecC-----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 101 AHPNLRLFITHG-----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 101 ~~~~~~~~I~hg-----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
..+|++|.-. ...++.||+++|+|+|+-...+ ....+.+.+.|..++.+ +.+++.+++.+++.
T Consensus 262 --~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~~~~ 329 (355)
T cd03819 262 --ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG--DAEALAQALDQILS 329 (355)
T ss_pred --HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC--CHHHHHHHHHHHHh
Confidence 7799999754 2469999999999999865432 23455555578887543 68899999865553
No 83
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.70 E-value=0.00085 Score=54.69 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=60.9
Q ss_pred CCCCEEEeecCCchhhh---cCCCccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCC
Q psy16939 84 LPDNVFIQKWYPQTDIL---AHPNLRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 84 ~~~nv~~~~~~p~~~~l---~~~~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
...++.+.+++++.++. ....+|+++...- ..+++||+++|+|+|.-...+ ....+.+.+.|..+.. .
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~ 361 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-D 361 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-C
Confidence 34679999999977533 2245788876543 568999999999999864332 3345555557888753 3
Q ss_pred CCHHHHHHHHHHhhcCC
Q psy16939 157 LTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 157 ~~~~~l~~al~~ll~~~ 173 (174)
.+.+++.+++.++++|+
T Consensus 362 ~~~~~la~~I~~ll~~~ 378 (407)
T cd04946 362 PTPNELVSSLSKFIDNE 378 (407)
T ss_pred CCHHHHHHHHHHHHhCH
Confidence 36899999999998764
No 84
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.67 E-value=0.0018 Score=51.56 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=85.2
Q ss_pred hHHHHHHHhcCCCCeEEEEcCCCcCCCC-CCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEe-ecCCch
Q psy16939 20 LSDLQQRADAAKGGFVYMSFGSVVDPTK-LSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQ-KWYPQT 97 (174)
Q Consensus 20 ~~~~~~~~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~ 97 (174)
++++.+-+...+++.|++=+.+...... .....+.++++.++..+..++...+.....+..+ .. ++.+. .-++..
T Consensus 167 d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~-~~--~~~i~~~~vd~~ 243 (335)
T PF04007_consen 167 DPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFE-KY--GVIIPPEPVDGL 243 (335)
T ss_pred ChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHh-cc--CccccCCCCCHH
Confidence 3444444553346888887776543221 2346688899999988876444433333322111 11 23332 235555
Q ss_pred hhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhh
Q psy16939 98 DILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTML 170 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll 170 (174)
+++.+ ||++|+-|| ++..||...|+|.|-+ +.++-...-+++.+.|.-... .+.+++.+.+++.+
T Consensus 244 ~Ll~~--a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~----~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 244 DLLYY--ADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHS----TDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHh--cCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEec----CCHHHHHHHHHHhh
Confidence 78854 999999988 7899999999999986 223333344667788873333 25677776665544
No 85
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.64 E-value=1.6e-05 Score=51.85 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=53.3
Q ss_pred cccCChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCH--HHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEE
Q psy16939 15 CFIDGLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSE--ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVF 89 (174)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~--~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~ 89 (174)
.+++.+..+..|+...+ +|.|+||+|+......... ..+..++++++.++..++...+.....++ ..+|+|++
T Consensus 22 VPyNG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~l--g~lP~nVR 97 (97)
T PF06722_consen 22 VPYNGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAEL--GELPDNVR 97 (97)
T ss_dssp ----SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGC--CS-TTTEE
T ss_pred cCCCCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhh--CCCCCCCC
Confidence 34456677888998887 8999999999976311122 48999999999999999999988765533 16788875
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.62 E-value=0.0011 Score=53.07 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcc----ccc--cCC---CCCEEEe-ecCCchh-
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPV----LNA--KTL---PDNVFIQ-KWYPQTD- 98 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~----~~~--~~~---~~nv~~~-~~~p~~~- 98 (174)
...+++..|.... ..-...++++++.. +.++++..++...++ +.+ +.. ..++.+. ++++..+
T Consensus 200 ~~~~i~~~Grl~~-----~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 200 SRPYILFVGRITR-----QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred CceEEEEEccccc-----ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 3456777787753 33355566666655 346666554432211 100 011 2345544 4666544
Q ss_pred --hhcCCCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCC----HHHHHHHHHH
Q psy16939 99 --ILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLT----KQSFLKNAQT 168 (174)
Q Consensus 99 --~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~----~~~l~~al~~ 168 (174)
++ ..+|++|.- +-..++.||+++|+|+|+-...+ ....++....|..++..+.+ .+++.+++.+
T Consensus 275 ~~~~--~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 275 VELL--SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG----IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHH--HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC----HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 44 779999974 23457899999999999875432 44555666678888655422 2789999998
Q ss_pred hhcCC
Q psy16939 169 MLNDP 173 (174)
Q Consensus 169 ll~~~ 173 (174)
+++++
T Consensus 349 l~~~~ 353 (388)
T TIGR02149 349 LLADP 353 (388)
T ss_pred HHhCH
Confidence 88764
No 87
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.61 E-value=0.0011 Score=51.21 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecCCCCcc----ccccCCCCCEEEeecCCchh-hhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTD-ILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~-~l~~~~ 104 (174)
++.+++..|+.... -..+.+-+.+..+... +.++++...+..... .......+++.+.++.+... ++ ..
T Consensus 188 ~~~~i~~~g~~~~~--k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 263 (353)
T cd03811 188 DGPVILAVGRLSPQ--KGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYL--KA 263 (353)
T ss_pred CceEEEEEecchhh--cChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHH--Hh
Confidence 56788888887531 1222233333333332 335555443322111 11113467899999876543 45 67
Q ss_pred ccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHH---HHHHHHhhcC
Q psy16939 105 LRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSF---LKNAQTMLND 172 (174)
Q Consensus 105 ~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l---~~al~~ll~~ 172 (174)
+|++|.- |..+++.||+++|+|+|+-... .....+.+...|..++.+ +.+.+ .+++.++..+
T Consensus 264 ~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 264 ADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLD 332 (353)
T ss_pred CCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCC
Confidence 9999854 3467899999999999986443 445667777888888654 45666 4555555544
No 88
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.60 E-value=0.00042 Score=56.62 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCEEEe-ecCCchhhhcC-CCccEEEe----c---CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCC
Q psy16939 86 DNVFIQ-KWYPQTDILAH-PNLRLFIT----H---GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 86 ~nv~~~-~~~p~~~~l~~-~~~~~~I~----h---gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
+|+.+. +|++..++-.. ..+|+++. . |-..++.||+++|+|+|.-... .....+++.+.|+.++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~--- 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG--- 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC---
Confidence 455554 57775554221 78999984 1 1245799999999999986432 3445666777888873
Q ss_pred CCHHHHHHHHHHhhcC
Q psy16939 157 LTKQSFLKNAQTMLND 172 (174)
Q Consensus 157 ~~~~~l~~al~~ll~~ 172 (174)
+.+++.+++.++++|
T Consensus 367 -d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 -DSEELAEQLIDLLSN 381 (415)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 689999999999987
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.60 E-value=0.00022 Score=48.60 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=63.7
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-C-CcEEEEecCCCCccccccCCCCCEEEeecCCch-hhhcCCCccEEEe
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQL-K-LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQT-DILAHPNLRLFIT 110 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~-~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~~l~~~~~~~~I~ 110 (174)
+.++++|+..... ....+++++++.+.+. + .++.+..+... ++.+ ...+|+.+.++++.. +++ ..+|++|.
T Consensus 3 ~~i~~~g~~~~~k-~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~-~~~~~v~~~g~~~e~~~~l--~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDK-GLEELIEAALERLKEKHPDIELIIIGNGPD--ELKR-LRRPNVRFHGFVEELPEIL--AAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGG-THHHHHH-HHHHHHHHSTTEEEEEECESS---HHCC-HHHCTEEEE-S-HHHHHHH--HC-SEEEE
T ss_pred ccccccccccccc-cccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHH-hcCCCEEEcCCHHHHHHHH--HhCCEEEE
Confidence 4556666664311 1122333244444433 3 35555433222 2211 125699999998532 244 66888887
Q ss_pred cC-----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 111 HG-----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 111 hg-----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
-. -.+++.|++++|+|+|.-+. ......+..+.|..+ .+ +.+++.++++++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~-~~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLV-AN--DPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEE-CC--CHHHHHHHHHHHhcC
Confidence 32 24899999999999999765 122344446778777 22 799999999999876
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.54 E-value=0.0028 Score=51.08 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--C---c-cccccC-CCCCEEEeecCCchhhhcC-C
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--D---P-VLNAKT-LPDNVFIQKWYPQTDILAH-P 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~---~-~~~~~~-~~~nv~~~~~~p~~~~l~~-~ 103 (174)
++.++|++=........+.+.+.++++++...+..+++.+.... . . .+.+.. ..+|+.+.+.+++.+++.. .
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 47888888544322224567899999999888755555542211 1 0 111101 1468999987766554322 6
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE-ecCCCCCHHHHHHHHHHhhc
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI-EPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~-l~~~~~~~~~l~~al~~ll~ 171 (174)
.|+++|+.++.+. .||.+.|+|+|.+-. -| ...+.|..+. +. .+.++|.++++++++
T Consensus 281 ~a~~vitdSSggi-~EA~~lg~Pvv~l~~--R~-----e~~~~g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 281 NADAVIGNSSSGI-IEAPSFGVPTINIGT--RQ-----KGRLRADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred hCCEEEEcChhHH-HhhhhcCCCEEeecC--Cc-----hhhhhcCeEEEeC---CCHHHHHHHHHHHhC
Confidence 7999999997666 999999999997731 11 1113354444 42 367889999888554
No 91
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.54 E-value=0.0025 Score=51.05 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=59.6
Q ss_pred CCCCCEEEeecCCchh---hhcCCCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC
Q psy16939 83 TLPDNVFIQKWYPQTD---ILAHPNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~---~l~~~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~ 155 (174)
...+++.+.++++..+ ++ ..+|+++... -..++.||+++|+|+|..-..+ ....+.+.+.|..+..
T Consensus 277 ~l~~~V~f~g~~~~~~~~~~l--~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~- 349 (392)
T cd03805 277 LLEDQVIFLPSISDSQKELLL--SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP- 349 (392)
T ss_pred CCCceEEEeCCCChHHHHHHH--hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC-
Confidence 3567999999998764 44 7799998532 2367899999999999874332 2233444566777642
Q ss_pred CCCHHHHHHHHHHhhcCC
Q psy16939 156 TLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 156 ~~~~~~l~~al~~ll~~~ 173 (174)
+.+++.+++.++++++
T Consensus 350 --~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 350 --TPEEFAEAMLKLANDP 365 (392)
T ss_pred --CHHHHHHHHHHHHhCh
Confidence 6889999999998875
No 92
>PLN02275 transferase, transferring glycosyl groups
Probab=97.46 E-value=0.0016 Score=52.43 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCEEEee-cCCchhhhc-CCCccEEEec-------CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCC
Q psy16939 86 DNVFIQK-WYPQTDILA-HPNLRLFITH-------GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 86 ~nv~~~~-~~p~~~~l~-~~~~~~~I~h-------gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
+|+.+.. |+|..++-. +..+|+++.. |=.+++.||+++|+|+|.....+ +...+++-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~lv~--- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGLLFS--- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeEEEC---
Confidence 4577655 677665422 1789999841 11357999999999999975322 556667777899885
Q ss_pred CCHHHHHHHHHHhh
Q psy16939 157 LTKQSFLKNAQTML 170 (174)
Q Consensus 157 ~~~~~l~~al~~ll 170 (174)
+.+++.+++.+++
T Consensus 359 -~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -SSSELADQLLELL 371 (371)
T ss_pred -CHHHHHHHHHHhC
Confidence 4789999998875
No 93
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.44 E-value=0.0019 Score=51.46 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCcc----ccccCCCCCEEEeecCCchh-hhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTD-ILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~-~l~~~~~ 105 (174)
++..++..|...... .....++.+.....+.+ .++++...+..... ......++++.+.++.++.. ++ ..|
T Consensus 203 ~~~~i~~vgrl~~~K-~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~a 279 (372)
T cd04949 203 KPHKIITVARLAPEK-QLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVY--QKA 279 (372)
T ss_pred CCCeEEEEEccCccc-CHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHH--hhh
Confidence 355667777764311 12233333333333333 36666544332111 11113567888888765443 45 678
Q ss_pred cEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 106 RLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 106 ~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|++|.-. ...++.||+++|+|+|.-.... .....+..-..|..++.. +.+++.++|.++++++
T Consensus 280 d~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~--d~~~la~~i~~ll~~~ 346 (372)
T cd04949 280 QLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG--DIEALAEAIIELLNDP 346 (372)
T ss_pred hEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC--cHHHHHHHHHHHHcCH
Confidence 8888643 3568999999999999864321 123445556788888643 6899999999999875
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.0042 Score=50.37 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-C-cEEEEecCCC-Cc--------------ccccc-
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-L-PIFWKIDITN-DP--------------VLNAK- 82 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~-~~i~~~~~~~-~~--------------~~~~~- 82 (174)
+...|-..-+ ...+.|..+|... .++..-++..++.+.. . ..||+=+..+ .. +....
T Consensus 219 ~~~~~r~~l~~~r~v~iaaSTH~G----Eeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~ 294 (419)
T COG1519 219 ELAALRRQLGGHRPVWVAASTHEG----EEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGD 294 (419)
T ss_pred HHHHHHHhcCCCCceEEEecCCCc----hHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCC
Confidence 3444444444 2578888888654 5665666666555443 2 4555433311 00 00000
Q ss_pred --CCCCCEEEeecCCchhhhcCCCccEEEe------cCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecC
Q psy16939 83 --TLPDNVFIQKWYPQTDILAHPNLRLFIT------HGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154 (174)
Q Consensus 83 --~~~~nv~~~~~~p~~~~l~~~~~~~~I~------hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~ 154 (174)
....++.+.+-+--+.++. .-+|+.+- +||.| ..|.++.|+|+|.=|....|.+-++.+.+.|+++.++
T Consensus 295 ~~~~~tdV~l~DtmGEL~l~y-~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~- 371 (419)
T COG1519 295 PPFSDTDVLLGDTMGELGLLY-GIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE- 371 (419)
T ss_pred CCCCCCcEEEEecHhHHHHHH-hhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC-
Confidence 1234788888776555442 67777654 66654 8899999999999999999999999999999999996
Q ss_pred CCCCHHHHHHHHHHhhcC
Q psy16939 155 QTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 155 ~~~~~~~l~~al~~ll~~ 172 (174)
+.+.+..++..+++|
T Consensus 372 ---~~~~l~~~v~~l~~~ 386 (419)
T COG1519 372 ---DADLLAKAVELLLAD 386 (419)
T ss_pred ---CHHHHHHHHHHhcCC
Confidence 356677777766665
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.43 E-value=0.0043 Score=54.02 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=80.4
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCcc----ccccCCCCCEEEeecCCchh-hhcCCCcc
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTD-ILAHPNLR 106 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~-~l~~~~~~ 106 (174)
..++...|...... ....+++.+...+.+.+ .++++...+..... ..+..+.+++.+.+|.++.. ++ ..+|
T Consensus 517 ~~vIg~VGRL~~~K-G~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll--~aaD 593 (694)
T PRK15179 517 RFTVGTVMRVDDNK-RPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWL--TQFN 593 (694)
T ss_pred CeEEEEEEeCCccC-CHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHH--HhcC
Confidence 45666777764311 12233444434443444 36655544332211 11113568899999976544 44 7799
Q ss_pred EEEec---CC-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 107 LFITH---GG-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 107 ~~I~h---gG-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
+++.- .| .+++.||+++|+|+|.-...+ ....+.+-..|+.+..++.+.+++.+++.+++.
T Consensus 594 v~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 594 AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred EEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 99863 33 678999999999999875432 334455556788887766666777777766654
No 96
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.42 E-value=0.0025 Score=52.43 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCCCEEEeecCCchhhhcC-CC----ccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecC
Q psy16939 84 LPDNVFIQKWYPQTDILAH-PN----LRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154 (174)
Q Consensus 84 ~~~nv~~~~~~p~~~~l~~-~~----~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~ 154 (174)
+.+++.+.+++++.++... .. +|+++... =..++.||+++|+|+|.-...+ ....+.+...|+.++.
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~ 390 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV 390 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC
Confidence 4577888888776554211 33 38988653 2469999999999999875432 3344445567888765
Q ss_pred CCCCHHHHHHHHHHhhcCC
Q psy16939 155 QTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 155 ~~~~~~~l~~al~~ll~~~ 173 (174)
. +.+++.+++.++++|+
T Consensus 391 ~--d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 391 L--DLEAIASALEDALSDS 407 (439)
T ss_pred C--CHHHHHHHHHHHHhCH
Confidence 4 6889999999998774
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.40 E-value=0.0023 Score=51.79 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=75.4
Q ss_pred eEEEEcCCCcCCCCCCHHHHH----HHHHHHh-hCC-CcEEEEecCCCCccccccCCCCCEEEeecCCchh-hhcCCCcc
Q psy16939 34 FVYMSFGSVVDPTKLSEETKL----GFLEVFK-QLK-LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD-ILAHPNLR 106 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~----~i~~~l~-~~~-~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~-~l~~~~~~ 106 (174)
.+++..|+..... ..+.+. ++...+. ..+ .++++..++.. ..+.+....+++.+.+++++.. .+ ..+|
T Consensus 225 ~~ilf~G~l~~~k--~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~~~~~~~--~~ad 299 (397)
T TIGR03087 225 RVLVFTGAMDYWP--NIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVADVRPYL--AHAA 299 (397)
T ss_pred cEEEEEEecCCcc--CHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecCCHHHHH--HhCC
Confidence 4566678765421 222222 2222232 223 46655443322 2221112356899999988544 44 7799
Q ss_pred EEEec----CCh-hhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 107 LFITH----GGI-SSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 107 ~~I~h----gG~-~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++|.- .|. +.+.||+++|+|+|.-+...+.. ....|.|+.+. .+.+++.+++.++++|+
T Consensus 300 v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 300 VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADPADFAAAILALLANP 363 (397)
T ss_pred EEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCHHHHHHHHHHHHcCH
Confidence 99842 343 36999999999999987532211 12346677764 37899999999998875
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.39 E-value=0.0095 Score=47.69 Aligned_cols=131 Identities=10% Similarity=-0.004 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCC--------cccc-ccCCCCCEEEeecC--Cchh-
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITND--------PVLN-AKTLPDNVFIQKWY--PQTD- 98 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~--------~~~~-~~~~~~nv~~~~~~--p~~~- 98 (174)
...+++..|...... ....+++.+....... +.++++..++... .+.. .....+++.+.++. +..+
T Consensus 189 ~~~~i~~vgrl~~~K-g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 189 ERPYITQVSRFDPWK-DPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCcEEEEEecccccc-CcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 456777788875422 1222333332222222 3466665544221 1111 11345678888876 4333
Q ss_pred --hhcCCCccEEEecCC----hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 99 --ILAHPNLRLFITHGG----ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 99 --~l~~~~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
++ ..+|+++...- ..++.||+++|+|+|+-...+ ....+.+-..|..++ +.+.+..++.+++++
T Consensus 268 ~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~~a~~i~~ll~~ 337 (372)
T cd03792 268 NALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEEAAVRILYLLRD 337 (372)
T ss_pred HHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHHHHHHHHHHHcC
Confidence 34 78999996542 459999999999999875432 123344456677654 356677788888766
Q ss_pred C
Q psy16939 173 P 173 (174)
Q Consensus 173 ~ 173 (174)
+
T Consensus 338 ~ 338 (372)
T cd03792 338 P 338 (372)
T ss_pred H
Confidence 4
No 99
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.30 E-value=0.0026 Score=52.61 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-----c-cccc-CCCCCEEEeecCCchhhh-cC
Q psy16939 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-----V-LNAK-TLPDNVFIQKWYPQTDIL-AH 102 (174)
Q Consensus 31 ~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-----~-~~~~-~~~~nv~~~~~~p~~~~l-~~ 102 (174)
+..++|.+|..... +.++.+..-.+.|++.|...+|........ + +.+. -.++++.+.+..+..+.+ .+
T Consensus 283 ~d~vvF~~fn~~~K---I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 283 EDAVVFGSFNNLFK---ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp SSSEEEEE-S-GGG-----HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCceEEEecCcccc---CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 35788888888876 789999999999999999888876543211 1 1111 234678888887765543 23
Q ss_pred CCccEEEe---cCChhhHHHHHHcCCCeEecccc-chHHHHHHHHHHcCceeEec
Q psy16939 103 PNLRLFIT---HGGISSLMEASSLGVPVLGVPFF-GDQYRNMVLLRHRGYALIEP 153 (174)
Q Consensus 103 ~~~~~~I~---hgG~~t~~eal~~g~P~i~vP~~-~dQ~~na~~l~~~G~g~~l~ 153 (174)
..+|+++. .+|.+|++|||..|+|+|..|-. .-.+.-+..+...|+...+-
T Consensus 360 ~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA 414 (468)
T PF13844_consen 360 QLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA 414 (468)
T ss_dssp GG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-
T ss_pred hhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC
Confidence 66999885 46889999999999999999853 34555667778888887654
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.28 E-value=0.0015 Score=52.26 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCCcCCC-CCCHHHHHHHHHHHhhC-CCcEEEEecCCC-----CccccccCCCCCEEEeecCCchhhhc
Q psy16939 29 AAKGGFVYMSFGSVVDPT-KLSEETKLGFLEVFKQL-KLPIFWKIDITN-----DPVLNAKTLPDNVFIQKWYPQTDILA 101 (174)
Q Consensus 29 ~~~~~~v~vs~Gs~~~~~-~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~-----~~~~~~~~~~~nv~~~~~~p~~~~l~ 101 (174)
..+++.+++++=...... ......+.++++++.+. +.++||...... ..+... .. +|+++.+.+++.+.+.
T Consensus 177 ~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~-~~-~~v~~~~~l~~~~~l~ 254 (346)
T PF02350_consen 177 DAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLK-KY-DNVRLIEPLGYEEYLS 254 (346)
T ss_dssp CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHT-T--TTEEEE----HHHHHH
T ss_pred ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhc-cc-CCEEEECCCCHHHHHH
Confidence 344789999994433311 01234566666666666 568999887322 111011 33 5999998876554332
Q ss_pred C-CCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 102 H-PNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 102 ~-~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
. ..|+++|+..| |-.-||.+.|+|+|.+=..++. ......|..+.+. .+.+++.+++++++++
T Consensus 255 ll~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geR----qe~r~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 255 LLKNADLVVGDSS-GIQEEAPSLGKPVVNIRDSGER----QEGRERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHESEEEESSH-HHHHHGGGGT--EEECSSS-S-----HHHHHTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred HHhcceEEEEcCc-cHHHHHHHhCCeEEEecCCCCC----HHHHhhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 1 66999999999 5555999999999999222221 1223446666654 4789999999998865
No 101
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.27 E-value=0.002 Score=50.71 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=73.1
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC--CcEEEEecCCCCcc----cc-ccCCCCCEEEeecCCchhhhcC-CCc
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLK--LPIFWKIDITNDPV----LN-AKTLPDNVFIQKWYPQTDILAH-PNL 105 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~--~~~i~~~~~~~~~~----~~-~~~~~~nv~~~~~~p~~~~l~~-~~~ 105 (174)
..++..|.... ..-...++++++... .++++..++....+ +. .....+++.+.+++++.++..+ ..+
T Consensus 194 ~~i~~~G~~~~-----~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 194 RYYLLVGRIVP-----ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred cEEEEEecccc-----cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 34566787753 223555666666554 46666554322111 11 1145679999999988753322 678
Q ss_pred cEEEecCCh-----hhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 106 RLFITHGGI-----SSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 106 ~~~I~hgG~-----~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|+++.+.-. .++.||+++|+|+|+-...+. ...+.. .|..+... +.+.+++.++++++
T Consensus 269 d~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~~----~~l~~~i~~l~~~~ 331 (363)
T cd04955 269 ALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKVG----DDLASLLEELEADP 331 (363)
T ss_pred CEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecCc----hHHHHHHHHHHhCH
Confidence 888876543 579999999999998754321 111122 34444322 22888888877663
No 102
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.26 E-value=0.0042 Score=50.27 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh-hCC-CcEEEEecCCCCcc----ccccCCCCCEEEeecCCchhhhcC-CC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK-QLK-LPIFWKIDITNDPV----LNAKTLPDNVFIQKWYPQTDILAH-PN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~-~~~-~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~~p~~~~l~~-~~ 104 (174)
++.+++..|...... ..+.+-+.+..+. ..+ .++++...+..... +.+..+.+++.+.++++..++... +.
T Consensus 192 ~~~~i~~~grl~~~K--g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ 269 (398)
T cd03796 192 DKITIVVISRLVYRK--GIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQ 269 (398)
T ss_pred CceEEEEEeccchhc--CHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHh
Confidence 466788888775421 2222222222232 222 35666554432211 111134678999999986553222 78
Q ss_pred ccEEEecC---Ch-hhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 105 LRLFITHG---GI-SSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 105 ~~~~I~hg---G~-~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
+|+++.-. |. .++.||+++|+|+|+-+..+- ...+.+ |.+..... +.+++.+++.+++++
T Consensus 270 ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~~~~~---~~~~l~~~l~~~l~~ 333 (398)
T cd03796 270 GHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMILLAEP---DVESIVRKLEEAISI 333 (398)
T ss_pred CCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-CceeecCC---CHHHHHHHHHHHHhC
Confidence 99998643 22 499999999999998765331 223322 33433322 678899999888765
No 103
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.25 E-value=0.0067 Score=50.50 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCc-------c-ccccCCCCCEEEeecCCchhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDP-------V-LNAKTLPDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~-------~-~~~~~~~~nv~~~~~~p~~~~l~~ 102 (174)
.+.+++..|...... ....+++.+....+..+ .++++..++...+ + ..+..+.+++.+.+.....+++
T Consensus 292 ~~~~i~~vGrl~~~K-g~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l-- 368 (475)
T cd03813 292 EPPVVGLIGRVVPIK-DIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYL-- 368 (475)
T ss_pred CCcEEEEEecccccc-CHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHH--
Confidence 466777888875421 11222333322222223 3555543332211 0 1111356789999866666677
Q ss_pred CCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHc------CceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 103 PNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR------GYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 103 ~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~------G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
.++|+++.. |-..++.||+++|+|+|.-... .....+.+. ..|..++.. +.+++.+++.++++|
T Consensus 369 ~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~~ 442 (475)
T cd03813 369 PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLKD 442 (475)
T ss_pred HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhcC
Confidence 789999865 3457899999999999985332 223334442 267777543 689999999999887
Q ss_pred C
Q psy16939 173 P 173 (174)
Q Consensus 173 ~ 173 (174)
+
T Consensus 443 ~ 443 (475)
T cd03813 443 P 443 (475)
T ss_pred H
Confidence 5
No 104
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.09 E-value=0.004 Score=48.48 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc---ccccC--CCCCEEEeecCCchh---hhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV---LNAKT--LPDNVFIQKWYPQTD---ILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~---~~~~~--~~~nv~~~~~~p~~~---~l~~~ 103 (174)
+...++..|.... ......+++++++.+.++++...+..... ..... ..+++.+.+++++.+ ++ .
T Consensus 170 ~~~~i~~~Gr~~~-----~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~--~ 242 (335)
T cd03802 170 KGDYLLFLGRISP-----EKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELL--G 242 (335)
T ss_pred CCCEEEEEEeecc-----ccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHH--H
Confidence 3456666777743 22345677777777778777655432211 00101 358999999998764 35 7
Q ss_pred CccEEEec-----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 104 NLRLFITH-----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 104 ~~~~~I~h-----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
.+|+++.- +-..++.||+++|+|+|.-...+ ....+.+-..|..++. .+++.+++.+++.
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~ 307 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVDS----VEELAAAVARADR 307 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeCC----HHHHHHHHHHHhc
Confidence 78888853 22458999999999999876532 2233333346777652 8888888888754
No 105
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.75 E-value=0.018 Score=52.16 Aligned_cols=140 Identities=13% Similarity=0.124 Sum_probs=82.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-----CcEEEEecCC-CCcc---------------cc
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-----LPIFWKIDIT-NDPV---------------LN 80 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-----~~~i~~~~~~-~~~~---------------~~ 80 (174)
++..|+...+ ..+++..|.... ..-+..+++++..+. ..+.+..|.. ...+ +.
T Consensus 469 ~l~r~~~~pd-kpvIL~VGRL~p-----~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~ 542 (1050)
T TIGR02468 469 EIMRFFTNPR-KPMILALARPDP-----KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLID 542 (1050)
T ss_pred HHHhhcccCC-CcEEEEEcCCcc-----ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHH
Confidence 3445554333 456677777753 333555566655442 1343334431 1100 01
Q ss_pred ccCCCCCEEEeecCCchhhhcC-CCc----cEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE
Q psy16939 81 AKTLPDNVFIQKWYPQTDILAH-PNL----RLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI 151 (174)
Q Consensus 81 ~~~~~~nv~~~~~~p~~~~l~~-~~~----~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~ 151 (174)
+..+.++|.+.+++++.++-.. ..| |+||.- |=..++.||+++|+|+|.-...+ ....++...-|+.
T Consensus 543 ~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlL 618 (1050)
T TIGR02468 543 KYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLL 618 (1050)
T ss_pred HhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEE
Confidence 1134578888888876653211 334 688875 33468999999999999975433 1223334456888
Q ss_pred ecCCCCCHHHHHHHHHHhhcCC
Q psy16939 152 EPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 152 l~~~~~~~~~l~~al~~ll~~~ 173 (174)
++.. +.++|.++|.++++|+
T Consensus 619 VdP~--D~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 619 VDPH--DQQAIADALLKLVADK 638 (1050)
T ss_pred ECCC--CHHHHHHHHHHHhhCH
Confidence 7654 6889999999999875
No 106
>PHA01633 putative glycosyl transferase group 1
Probab=96.68 E-value=0.011 Score=47.08 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCCCEEEeec---CCch---hhhcCCCccEEEec----CChhhHHHHHHcCCCeEeccc------cchH------HHHH
Q psy16939 83 TLPDNVFIQKW---YPQT---DILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPF------FGDQ------YRNM 140 (174)
Q Consensus 83 ~~~~nv~~~~~---~p~~---~~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~------~~dQ------~~na 140 (174)
..++++.+.++ .+.. .++ ..+|+++.- |=..++.||+++|+|+|.--. .+++ ..+.
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v 275 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKV 275 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCH
Confidence 45678888854 4443 344 779999974 335679999999999988522 1222 2222
Q ss_pred HHHH--HcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 141 VLLR--HRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 141 ~~l~--~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
.... ..|.|..++ ..+++++.+++.+++.
T Consensus 276 ~~~~~~~~g~g~~~~--~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 276 EEYYDKEHGQKWKIH--KFQIEDMANAIILAFE 306 (335)
T ss_pred HHhcCcccCceeeec--CCCHHHHHHHHHHHHh
Confidence 2222 346777664 4589999999998843
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.63 E-value=0.039 Score=46.45 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh----hCC-CcEEEEecCCC---Ccc-ccccCCCCCEEEeecCCchhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK----QLK-LPIFWKIDITN---DPV-LNAKTLPDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~----~~~-~~~i~~~~~~~---~~~-~~~~~~~~nv~~~~~~p~~~~l~~ 102 (174)
++.++++.|.... ...+..+++++. ..+ .++++...+.. +.+ ..+..+.+++.+.++.+...++
T Consensus 318 ~~~~il~vGrl~~-----~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~-- 390 (500)
T TIGR02918 318 KPFSIITASRLAK-----EKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVY-- 390 (500)
T ss_pred CCeEEEEEecccc-----ccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHH--
Confidence 4567778888754 222444444443 333 24444333322 111 1111345789999988877888
Q ss_pred CCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC--CCC----HHHHHHHHHHhhcC
Q psy16939 103 PNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ--TLT----KQSFLKNAQTMLND 172 (174)
Q Consensus 103 ~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~--~~~----~~~l~~al~~ll~~ 172 (174)
..+|++|.-. -..++.||+++|+|+|.-...+ -+...++.-.-|..+... ..+ .+.+.+++.+++++
T Consensus 391 ~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 391 KDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred HhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhCh
Confidence 6799998643 3578999999999999964321 123344444567777522 112 67888899888843
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.60 E-value=0.02 Score=47.50 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CCc----cccccCCCCCEEEeecCCchh---hhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-NDP----VLNAKTLPDNVFIQKWYPQTD---ILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~~----~~~~~~~~~nv~~~~~~p~~~---~l~~~ 103 (174)
...+++..|...... ..+.+-+.+..+.+.+.++++...+. ... .+.. ..+.++.+....+... ++ .
T Consensus 290 ~~~~i~~vGrl~~~K--g~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~--~ 364 (473)
T TIGR02095 290 DVPLFGVISRLTQQK--GVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAE-RYPGNVRVIIGYDEALAHLIY--A 364 (473)
T ss_pred CCCEEEEEecCcccc--ChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHH-HCCCcEEEEEcCCHHHHHHHH--H
Confidence 356777778776421 23333333344433456777765442 111 1111 3456777766665543 44 7
Q ss_pred CccEEEecC---C-hhhHHHHHHcCCCeEeccccchHHHHHHHHHH------cCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 104 NLRLFITHG---G-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH------RGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 104 ~~~~~I~hg---G-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~------~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
.+|+++.-. | ..+.+||+++|+|.|+-...+ ....+.+ .+.|..++.. +.+++.+++.+++.
T Consensus 365 ~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~ 436 (473)
T TIGR02095 365 GADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALR 436 (473)
T ss_pred hCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 899999653 2 347899999999998764322 1112222 2678887543 67889999888775
No 109
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.022 Score=47.96 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC-------cccccc--CCCCCEEEeecCCchhhhc-
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND-------PVLNAK--TLPDNVFIQKWYPQTDILA- 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~-------~~~~~~--~~~~nv~~~~~~p~~~~l~- 101 (174)
.-+||+|++.... ..++.+..=++.|+..|..++|..++..- +...++ -..+++++.+-.|..+.++
T Consensus 429 ~avVf~c~~n~~K---~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~ 505 (620)
T COG3914 429 DAVVFCCFNNYFK---ITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRAR 505 (620)
T ss_pred CeEEEEecCCccc---CCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHh
Confidence 5689999988876 67899999999999999999998776321 111111 2356788888877665433
Q ss_pred CCCccEEEe---cCChhhHHHHHHcCCCeEeccccchHHH--HHHHH-HHcCceeEe
Q psy16939 102 HPNLRLFIT---HGGISSLMEASSLGVPVLGVPFFGDQYR--NMVLL-RHRGYALIE 152 (174)
Q Consensus 102 ~~~~~~~I~---hgG~~t~~eal~~g~P~i~vP~~~dQ~~--na~~l-~~~G~g~~l 152 (174)
+.-+|+|.. -||.+|..|+|-.|+|++..+ ++||. |+..+ ..+|+-..+
T Consensus 506 ~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 506 YGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred hchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 377999987 599999999999999999886 66664 33333 345655444
No 110
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.44 E-value=0.15 Score=40.26 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCCcCCCCCCHHHHH----HHHHHHhhCCCcEEEEecCCCCccc---cccCC--CCCEEEeec---CCc
Q psy16939 29 AAKGGFVYMSFGSVVDPTKLSEETKL----GFLEVFKQLKLPIFWKIDITNDPVL---NAKTL--PDNVFIQKW---YPQ 96 (174)
Q Consensus 29 ~~~~~~v~vs~Gs~~~~~~~~~~~~~----~i~~~l~~~~~~~i~~~~~~~~~~~---~~~~~--~~nv~~~~~---~p~ 96 (174)
..+++.+.|-.|+......+..+... .+.+.++..+.++.+.......+++ ..... ...+.+.+- -|+
T Consensus 143 ~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy 222 (311)
T PF06258_consen 143 ALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPY 222 (311)
T ss_pred cCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcH
Confidence 33478888888877666667776444 4444444445455555543322211 01012 344433332 467
Q ss_pred hhhhcCCCccEEE-ecCChhhHHHHHHcCCCeEeccccchHH---HHHHHHHHcCceeEec
Q psy16939 97 TDILAHPNLRLFI-THGGISSLMEASSLGVPVLGVPFFGDQY---RNMVLLRHRGYALIEP 153 (174)
Q Consensus 97 ~~~l~~~~~~~~I-~hgG~~t~~eal~~g~P~i~vP~~~dQ~---~na~~l~~~G~g~~l~ 153 (174)
...| ..||.++ |--..+.++||+..|+|+.++|...... .-...+++.|.-..++
T Consensus 223 ~~~L--a~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 223 LGFL--AAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred HHHH--HhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECC
Confidence 7788 4566655 5555788999999999999998765111 1334556667776654
No 111
>PRK14098 glycogen synthase; Provisional
Probab=96.39 E-value=0.04 Score=46.19 Aligned_cols=130 Identities=15% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-----CccccccCCCCCEEEeecCCch---hhhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-----DPVLNAKTLPDNVFIQKWYPQT---DILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~nv~~~~~~p~~---~~l~~~ 103 (174)
+.+++...|...... ..+.+-+.+..+...+.++++...+.. +.++.+ ..++++.+..+++.. .++ +
T Consensus 306 ~~~~i~~vgRl~~~K--G~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~-~~~~~V~~~g~~~~~~~~~~~--a 380 (489)
T PRK14098 306 ETPLVGVIINFDDFQ--GAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAE-EHPEQVSVQTEFTDAFFHLAI--A 380 (489)
T ss_pred CCCEEEEeccccccC--cHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEEecCHHHHHHHH--H
Confidence 345777777765421 333333333334334567776654432 111111 346789998888764 355 7
Q ss_pred CccEEEecCC----hhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhh
Q psy16939 104 NLRLFITHGG----ISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTML 170 (174)
Q Consensus 104 ~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll 170 (174)
.+|+++...= ..+.+||+++|+|.|+....+ |...+ ..++.+.|..++.. +.+++.+++.+++
T Consensus 381 ~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~--d~~~la~ai~~~l 449 (489)
T PRK14098 381 GLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDY--TPEALVAKLGEAL 449 (489)
T ss_pred hCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCC--CHHHHHHHHHHHH
Confidence 8999997542 247889999999888764322 21110 01123677777543 6788888888754
No 112
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.35 E-value=0.035 Score=44.02 Aligned_cols=79 Identities=10% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCCEEEeecCCchhhhcC-CC-ccEEEecC-------C------hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcC
Q psy16939 83 TLPDNVFIQKWYPQTDILAH-PN-LRLFITHG-------G------ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRG 147 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l~~-~~-~~~~I~hg-------G------~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G 147 (174)
...+|+.+.+|++..++..+ .+ ..++.... . .+-+.+.+++|+|+|+.+ +...+..+++.+
T Consensus 204 ~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~ 279 (333)
T PRK09814 204 ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVENG 279 (333)
T ss_pred ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhCC
Confidence 34579999999998876432 22 11221111 1 123778899999999854 456778899999
Q ss_pred ceeEecCCCCCHHHHHHHHHHh
Q psy16939 148 YALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 148 ~g~~l~~~~~~~~~l~~al~~l 169 (174)
+|+.++ +.+++.+++.++
T Consensus 280 ~G~~v~----~~~el~~~l~~~ 297 (333)
T PRK09814 280 LGFVVD----SLEELPEIIDNI 297 (333)
T ss_pred ceEEeC----CHHHHHHHHHhc
Confidence 999996 456777777764
No 113
>PRK00654 glgA glycogen synthase; Provisional
Probab=96.29 E-value=0.061 Score=44.69 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-C----ccccccCCCCCEEE-eecCCch---hhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-D----PVLNAKTLPDNVFI-QKWYPQT---DILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~----~~~~~~~~~~nv~~-~~~~p~~---~~l~~ 102 (174)
...+++..|...... ..+.+-+.+..+...+.++++..++.. . .++.+ ..+.++.+ .+| +.. .++
T Consensus 281 ~~~~i~~vGRl~~~K--G~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~-~~~~~v~~~~g~-~~~~~~~~~-- 354 (466)
T PRK00654 281 DAPLFAMVSRLTEQK--GLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAA-RYPGKVGVQIGY-DEALAHRIY-- 354 (466)
T ss_pred CCcEEEEeecccccc--ChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHH-HCCCcEEEEEeC-CHHHHHHHH--
Confidence 356777778775421 222222222223233567777654421 1 11111 34556554 445 322 344
Q ss_pred CCccEEEecC---C-hhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 103 PNLRLFITHG---G-ISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 103 ~~~~~~I~hg---G-~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
..+|+++.-. | ..+.+||+++|+|.|+-...+ |...+...-.+.+.|..++.. +.+++.+++.++++
T Consensus 355 ~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 7899999752 2 348999999999998864321 211110000223678887643 67888888888764
No 114
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=96.22 E-value=0.061 Score=44.11 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC------CcEEEEecCCCC------ccc----cccCCCCCEEEeecCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK------LPIFWKIDITND------PVL----NAKTLPDNVFIQKWYP 95 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~------~~~i~~~~~~~~------~~~----~~~~~~~nv~~~~~~p 95 (174)
+..++++.|...... .....++.+.......+ .++++..++... .++ .+..+.+++.+.+++|
T Consensus 236 ~~~~il~vgr~~~~K-~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~ 314 (419)
T cd03806 236 RENQILSIAQFRPEK-NHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAP 314 (419)
T ss_pred CCcEEEEEEeecCCC-CHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456788888775422 12333444433333322 355554433210 111 0113467899999988
Q ss_pred chhhhcC-CCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHH---HcCceeEecCCCCCHHHHHHHHH
Q psy16939 96 QTDILAH-PNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLR---HRGYALIEPIQTLTKQSFLKNAQ 167 (174)
Q Consensus 96 ~~~~l~~-~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~---~~G~g~~l~~~~~~~~~l~~al~ 167 (174)
+.++..+ ..||++|+.. =..++.||+++|+|.|+.-..+.- ...+. .-..|.... +.+++.+++.
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~----d~~~la~ai~ 387 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS----TAEEYAEAIE 387 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC----CHHHHHHHHH
Confidence 7653322 7799988532 235789999999999986432211 11122 334676652 7899999999
Q ss_pred HhhcCC
Q psy16939 168 TMLNDP 173 (174)
Q Consensus 168 ~ll~~~ 173 (174)
++++++
T Consensus 388 ~ll~~~ 393 (419)
T cd03806 388 KILSLS 393 (419)
T ss_pred HHHhCC
Confidence 999864
No 115
>PLN02846 digalactosyldiacylglycerol synthase
Probab=96.11 E-value=0.047 Score=45.44 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhh----CC-CcEEEEecCCCCccccc--cCCCCCE-EEeecCCchhhhcCCCc
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQ----LK-LPIFWKIDITNDPVLNA--KTLPDNV-FIQKWYPQTDILAHPNL 105 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~----~~-~~~i~~~~~~~~~~~~~--~~~~~nv-~~~~~~p~~~~l~~~~~ 105 (174)
.+++..|-.... ..+..++++++. .+ .++++...+....++.+ +..+-+. .+.++.+..+++ ..+
T Consensus 229 ~~~l~vGRL~~e-----K~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~--~~~ 301 (462)
T PLN02846 229 KGAYYIGKMVWS-----KGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLF--HDY 301 (462)
T ss_pred eEEEEEecCccc-----CCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHH--HhC
Confidence 356677777642 234445555443 22 34555444433222111 0122122 344555555677 678
Q ss_pred cEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 106 RLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 106 ~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
|+||.- +=..++.||+++|+|+|..-... + ..+.+-+-|...+ +.+++.+++.+++++
T Consensus 302 DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 302 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRATLKALAE 363 (462)
T ss_pred CEEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHHHHHHHcc
Confidence 999987 44678999999999999985433 1 3333344444442 577888888888764
No 116
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.99 E-value=0.04 Score=45.63 Aligned_cols=134 Identities=14% Similarity=0.038 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-Ccc-cc--ccCCCCCEEEeecCCchh---hhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPV-LN--AKTLPDNVFIQKWYPQTD---ILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~-~~--~~~~~~nv~~~~~~p~~~---~l~~~~ 104 (174)
...+++..|..... ...+.+-+.++.+.+.+.++++...+.. ..+ +. ....++++.+....+... ++ ..
T Consensus 295 ~~~~i~~vGrl~~~--Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~ 370 (476)
T cd03791 295 DAPLFGFVGRLTEQ--KGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY--AG 370 (476)
T ss_pred CCCEEEEEeecccc--ccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--Hh
Confidence 45677777877642 1333344444444444567766654422 111 10 012356777655444332 34 77
Q ss_pred ccEEEec----CChhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 105 LRLFITH----GGISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 105 ~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
+|+++.. +-..+.+||+++|+|.|+-...+ |...+...-.+.|.|..++.. +.+++.+++.++++
T Consensus 371 aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 371 ADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred CCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHH
Confidence 9999964 22357899999999998764321 211111101134578888643 57889999988764
No 117
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.95 E-value=0.091 Score=41.25 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=83.7
Q ss_pred HHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-C---CccccccCCCCCEEEeecCC---
Q psy16939 24 QQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-N---DPVLNAKTLPDNVFIQKWYP--- 95 (174)
Q Consensus 24 ~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~---~~~~~~~~~~~nv~~~~~~p--- 95 (174)
.+++.... ++.|++..|+......++.+.+.++++.+...++++++..++. + ..++.. ..+. ..+.+-.+
T Consensus 170 ~~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~-~~~~-~~l~g~~sL~e 247 (319)
T TIGR02193 170 VAFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAE-ALPG-AVVLPKMSLAE 247 (319)
T ss_pred hhhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHh-hCCC-CeecCCCCHHH
Confidence 34554432 6788888887666566899999999999987677777664542 2 111211 1222 22333323
Q ss_pred chhhhcCCCccEEEecCChhhHHHHHHcCCCeEec--cccchHHHHHHHHHHcCceeEe--cCCCCCHHHHHHHHHHhh
Q psy16939 96 QTDILAHPNLRLFITHGGISSLMEASSLGVPVLGV--PFFGDQYRNMVLLRHRGYALIE--PIQTLTKQSFLKNAQTML 170 (174)
Q Consensus 96 ~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v--P~~~dQ~~na~~l~~~G~g~~l--~~~~~~~~~l~~al~~ll 170 (174)
...++ ..|+++|+.-. |.++=|.+.|+|.+.+ |....++. -+ .....+.. .-+..+++++.++++++|
T Consensus 248 l~ali--~~a~l~I~~DS-gp~HlAaa~g~P~i~lfg~t~p~~~~--P~--~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 248 VAALL--AGADAVVGVDT-GLTHLAAALDKPTVTLYGATDPGRTG--GY--GKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHH--HcCCEEEeCCC-hHHHHHHHcCCCEEEEECCCCHhhcc--cC--CCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 23355 77999999876 5788888999999987 43322210 00 00001111 135679999999998875
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.83 E-value=0.21 Score=42.55 Aligned_cols=116 Identities=13% Similarity=-0.016 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCccc----cccCCCCCEEEeecCCch-hhhcCCCcc
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPVL----NAKTLPDNVFIQKWYPQT-DILAHPNLR 106 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~----~~~~~~~nv~~~~~~p~~-~~l~~~~~~ 106 (174)
..++.+.|-..... .....++.+...+...+ .++++...+...+++ .+..+.+++.+.++..+. .++ ..+|
T Consensus 398 ~~vIg~VgRl~~~K-g~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~L--aaAD 474 (578)
T PRK15490 398 DTTIGGVFRFVGDK-NPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWL--QKMN 474 (578)
T ss_pred CcEEEEEEEEehhc-CHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHH--HhCC
Confidence 34555666544321 23445555555555444 366665544322211 111356889999986543 345 7899
Q ss_pred EEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCC
Q psy16939 107 LFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 107 ~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~ 155 (174)
++|.. |-.+++.||+++|+|+|.-... .+...+.+-..|..++..
T Consensus 475 VfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 475 VFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA 523 (578)
T ss_pred EEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC
Confidence 99964 3367999999999999976532 233444455566666543
No 119
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.69 E-value=0.12 Score=41.79 Aligned_cols=135 Identities=21% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC----C-CcEEEEecCCCCcc----ccccCCCCCEEEeec-CCchhhhc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL----K-LPIFWKIDITNDPV----LNAKTLPDNVFIQKW-YPQTDILA 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~----~-~~~i~~~~~~~~~~----~~~~~~~~nv~~~~~-~p~~~~l~ 101 (174)
+++|.+--||.... -...+..++++.+.. + .+|++...+....+ ... ....++.+... -...+++
T Consensus 184 ~~iIaLLPGSR~~E---I~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~m- 258 (373)
T PF02684_consen 184 KPIIALLPGSRKSE---IKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILA-EYPPDVSIVIIEGESYDAM- 258 (373)
T ss_pred CcEEEEeCCCCHHH---HHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH-hhCCCCeEEEcCCchHHHH-
Confidence 68999999998641 123334444443332 2 36776655433221 111 12223333222 2445566
Q ss_pred CCCccEEEecCChhhHHHHHHcCCCeEec-cccchHHHHHHHHHHcCc-ee--E---------ecCCCCCHHHHHHHHHH
Q psy16939 102 HPNLRLFITHGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGY-AL--I---------EPIQTLTKQSFLKNAQT 168 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~-g~--~---------l~~~~~~~~~l~~al~~ 168 (174)
..||+++.-.|. .+.|+...|+||+++ -...=-+.-|+++.+... |+ . +-.++.+++.+.+++.+
T Consensus 259 -~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ 336 (373)
T PF02684_consen 259 -AAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLE 336 (373)
T ss_pred -HhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHH
Confidence 679999999985 788999999999998 333334556677765322 11 1 11346799999999999
Q ss_pred hhcCC
Q psy16939 169 MLNDP 173 (174)
Q Consensus 169 ll~~~ 173 (174)
++.|+
T Consensus 337 ll~~~ 341 (373)
T PF02684_consen 337 LLENP 341 (373)
T ss_pred HhcCH
Confidence 99875
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.60 E-value=0.053 Score=47.26 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=52.3
Q ss_pred CEEEeecCCchh-hhcCCCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHH
Q psy16939 87 NVFIQKWYPQTD-ILAHPNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQS 161 (174)
Q Consensus 87 nv~~~~~~p~~~-~l~~~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~ 161 (174)
++.+.++.++.. ++ ..+|+||.-. =..++.||+++|+|+|.-...+... +..-+.|. +. -+.++
T Consensus 602 ~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGl-l~---~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCL-TY---KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeE-ec---CCHHH
Confidence 466677766554 66 7899998743 3578999999999999986544321 22222232 22 26899
Q ss_pred HHHHHHHhhcCC
Q psy16939 162 FLKNAQTMLNDP 173 (174)
Q Consensus 162 l~~al~~ll~~~ 173 (174)
+.+++.++++++
T Consensus 671 fAeAI~~LLsd~ 682 (794)
T PLN02501 671 FVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHhCc
Confidence 999999999875
No 121
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.59 E-value=0.67 Score=35.79 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHH----HHHHHHhhCCCcEEEEecCCCCcc---ccccCCC--CCE----EEeecCCchh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKL----GFLEVFKQLKLPIFWKIDITNDPV---LNAKTLP--DNV----FIQKWYPQTD 98 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~----~i~~~l~~~~~~~i~~~~~~~~~~---~~~~~~~--~nv----~~~~~~p~~~ 98 (174)
+++|-|-.|+........++... .+.+.+++.+.+|++.......+. .....+. ..+ .=.++-|+-+
T Consensus 161 rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~ 240 (329)
T COG3660 161 RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYID 240 (329)
T ss_pred CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHH
Confidence 67776666666554445444443 444566667778888776533221 0000111 111 1123558888
Q ss_pred hhcCCCccEEEecCC-hhhHHHHHHcCCCeEec--cccc--hHHHHHHHHHHcCceeEecC----------CCC-CHHHH
Q psy16939 99 ILAHPNLRLFITHGG-ISSLMEASSLGVPVLGV--PFFG--DQYRNMVLLRHRGYALIEPI----------QTL-TKQSF 162 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG-~~t~~eal~~g~P~i~v--P~~~--dQ~~na~~l~~~G~g~~l~~----------~~~-~~~~l 162 (174)
.| ++||.+|.-.. .+.++||++.|+|+.+. |.+. --...-+.+++.+++...+. +-+ ..+++
T Consensus 241 ~L--a~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~~e~ysy~PLnEt~Ri 318 (329)
T COG3660 241 ML--AAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLALEEYSYKPLNETERI 318 (329)
T ss_pred HH--hhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhhhcccccCCchHHHHH
Confidence 88 77998877665 67789999999999877 3331 12223344555555544332 112 24667
Q ss_pred HHHHHHhhc
Q psy16939 163 LKNAQTMLN 171 (174)
Q Consensus 163 ~~al~~ll~ 171 (174)
.+.++..+.
T Consensus 319 A~~Ira~l~ 327 (329)
T COG3660 319 AEEIRAELG 327 (329)
T ss_pred HHHHHHHhC
Confidence 777776554
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.59 E-value=0.084 Score=38.20 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCCCCEEEeecCCchhhh-cC-CCccEEEecCC----hhhHHHHHHcCCCeEeccccc
Q psy16939 83 TLPDNVFIQKWYPQTDIL-AH-PNLRLFITHGG----ISSLMEASSLGVPVLGVPFFG 134 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l-~~-~~~~~~I~hgG----~~t~~eal~~g~P~i~vP~~~ 134 (174)
....|+.+.++++..+.+ .. ..||++++... .+++.||+++|+|+|+-+..+
T Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 158 LLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 456799999997332221 11 45999999887 789999999999999986543
No 123
>PLN02949 transferase, transferring glycosyl groups
Probab=95.55 E-value=0.026 Score=47.04 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=52.9
Q ss_pred CCCCCEEEeecCCchhhhcC-CCccEEEec---CC-hhhHHHHHHcCCCeEeccccc---hHHHHHHHHHHcC-ceeEec
Q psy16939 83 TLPDNVFIQKWYPQTDILAH-PNLRLFITH---GG-ISSLMEASSLGVPVLGVPFFG---DQYRNMVLLRHRG-YALIEP 153 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~~l~~-~~~~~~I~h---gG-~~t~~eal~~g~P~i~vP~~~---dQ~~na~~l~~~G-~g~~l~ 153 (174)
.+.+++.+.+++++.++... .+|+++++- -| ..++.||+++|+|+|.....+ |..... ..| .|...+
T Consensus 332 ~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~~ 407 (463)
T PLN02949 332 GLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLAT 407 (463)
T ss_pred CCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccCC
Confidence 35688999999986653221 678998842 22 347999999999999985432 111100 002 243331
Q ss_pred CCCCCHHHHHHHHHHhhcC
Q psy16939 154 IQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 154 ~~~~~~~~l~~al~~ll~~ 172 (174)
+.+++.+++.+++++
T Consensus 408 ----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 408 ----TVEEYADAILEVLRM 422 (463)
T ss_pred ----CHHHHHHHHHHHHhC
Confidence 688899999988874
No 124
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.49 E-value=0.16 Score=43.60 Aligned_cols=135 Identities=8% Similarity=-0.052 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh--hC--CCcEEEEecCCCCcc-cccc--CCC-CCEEEeecCCchhhhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK--QL--KLPIFWKIDITNDPV-LNAK--TLP-DNVFIQKWYPQTDILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~--~~--~~~~i~~~~~~~~~~-~~~~--~~~-~nv~~~~~~p~~~~l~~~ 103 (174)
+++|.+--||.... -...+..++++.+ .. +.+|++........+ +.+. ..+ ..+.+..--...+++ .
T Consensus 413 ~~iIaLLPGSR~~E---I~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m--~ 487 (608)
T PRK01021 413 KPIVAAFPGSRRGD---ILRNLTIQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELM--R 487 (608)
T ss_pred CCEEEEECCCCHHH---HHHHHHHHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHH--H
Confidence 68899999998651 2445666666665 33 346666443322111 1110 111 122322211124667 6
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEecc-ccchHHHHHHHHHHc------------CceeE---ec-CCCCCHHHHHHHH
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGVP-FFGDQYRNMVLLRHR------------GYALI---EP-IQTLTKQSFLKNA 166 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~vP-~~~dQ~~na~~l~~~------------G~g~~---l~-~~~~~~~~l~~al 166 (174)
.||+.+.-.|. .+.|+...|+||+++= ...=-..-++++.+. |-.++ +. .++.+++++.+++
T Consensus 488 aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l 566 (608)
T PRK01021 488 ECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL 566 (608)
T ss_pred hcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH
Confidence 79999999995 7889999999999982 222223445666551 11111 21 3567899999986
Q ss_pred HHhhcCC
Q psy16939 167 QTMLNDP 173 (174)
Q Consensus 167 ~~ll~~~ 173 (174)
+++.|+
T Consensus 567 -~lL~d~ 572 (608)
T PRK01021 567 -DILKTS 572 (608)
T ss_pred -HHhcCH
Confidence 766654
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.38 E-value=0.26 Score=40.34 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHhhCCCcE-EEEecCCCCccccccCCCCCEEEeecCCc----hhhhcCCCccEEEec----CChhhHHHHHHc
Q psy16939 53 KLGFLEVFKQLKLPI-FWKIDITNDPVLNAKTLPDNVFIQKWYPQ----TDILAHPNLRLFITH----GGISSLMEASSL 123 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~nv~~~~~~p~----~~~l~~~~~~~~I~h----gG~~t~~eal~~ 123 (174)
...+++++...+..+ ++..|... + ....++...++... ..++ ..+|++|.- |-..++.||+++
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~-~-----~~~~~v~~~g~~~~~~~l~~~y--~~aDvfV~pS~~Egfp~vilEAmA~ 329 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFS-P-----FTAGNVVNHGFETDKRKLMSAL--NQMDALVFSSRVDNYPLILCEALSI 329 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCC-c-----ccccceEEecCcCCHHHHHHHH--HhCCEEEECCccccCcCHHHHHHHc
Confidence 466778877765432 33344322 1 22346776776533 2334 679999874 345789999999
Q ss_pred CCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHH
Q psy16939 124 GVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLK 164 (174)
Q Consensus 124 g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ 164 (174)
|+|+|.-...+= ...+. .+.|..++.. +.++|.+
T Consensus 330 G~PVVat~~gG~----~Eiv~-~~~G~lv~~~--d~~~La~ 363 (405)
T PRK10125 330 GVPVIATHSDAA----REVLQ-KSGGKTVSEE--EVLQLAQ 363 (405)
T ss_pred CCCEEEeCCCCh----HHhEe-CCcEEEECCC--CHHHHHh
Confidence 999999876541 12222 2467777654 3444444
No 126
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.35 E-value=0.075 Score=40.95 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc---ccccCC-CCC-EEEeecCC---chhhhcCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV---LNAKTL-PDN-VFIQKWYP---QTDILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~---~~~~~~-~~n-v~~~~~~p---~~~~l~~~ 103 (174)
++.|++..|+......++.+.+.++++.+...++++++..++++... +.+ .. ..+ +.+.+..+ ...++ .
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~-~~~~~~~~~~~~~~~l~e~~~li--~ 197 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAA-ALGGPRVVNLAGKTSLRELAALL--A 197 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH-hcCCCccccCcCCCCHHHHHHHH--H
Confidence 57888888887665568899999999999887788887665543221 111 11 112 22222222 23345 6
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
.+|++|+.-. |+++=|.+.|+|++.+
T Consensus 198 ~~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 198 RADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred hCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 7999999965 5777778999999988
No 127
>PHA01630 putative group 1 glycosyl transferase
Probab=94.97 E-value=0.62 Score=37.07 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=44.7
Q ss_pred cCCchh---hhcCCCccEEEec----CChhhHHHHHHcCCCeEeccccc--hHHHHH---HHHH-----------HcCce
Q psy16939 93 WYPQTD---ILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFG--DQYRNM---VLLR-----------HRGYA 149 (174)
Q Consensus 93 ~~p~~~---~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~--dQ~~na---~~l~-----------~~G~g 149 (174)
+++..+ ++ ..+|+++.- |-..++.||+++|+|+|.-...+ |...+. ..+. -.++|
T Consensus 197 ~v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 366544 34 789999842 22568999999999999975432 322211 1010 02345
Q ss_pred eEecCCCCCHHHHHHHHHHhhcC
Q psy16939 150 LIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 150 ~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
..+.. +.+++.+++.+++.+
T Consensus 275 ~~v~~---~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 275 YFLDP---DIEDAYQKLLEALAN 294 (331)
T ss_pred cccCC---CHHHHHHHHHHHHhC
Confidence 55543 457777777777765
No 128
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.58 E-value=0.29 Score=38.69 Aligned_cols=95 Identities=12% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCc-CCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc---cccccCCCCCEE-EeecCC---chhhhcCC
Q psy16939 32 GGFVYMSFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP---VLNAKTLPDNVF-IQKWYP---QTDILAHP 103 (174)
Q Consensus 32 ~~~v~vs~Gs~~-~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~---~~~~~~~~~nv~-~~~~~p---~~~~l~~~ 103 (174)
++.|.+..|+.. ....++.+.+.++++.+...+.++++..++++.+ ++.+ ..+.++. +.+-.+ ...++ .
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-~~~~~~~~l~g~~sL~el~ali--~ 250 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-LLPGELRNLAGETSLDEAVDLI--A 250 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-hCCcccccCCCCCCHHHHHHHH--H
Confidence 688999998853 4456899999999999877677877766554422 1211 1222222 223222 23355 7
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
.||++|+.-. |.++=|.+.|+|+|.+
T Consensus 251 ~a~l~I~~DS-Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 251 LAKAVVTNDS-GLMHVAAALNRPLVAL 276 (334)
T ss_pred hCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 7999999876 5788888999999987
No 129
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.52 E-value=0.63 Score=36.96 Aligned_cols=95 Identities=9% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC--CC---ccccccCCC-CC-EEEeecCC---chhhhc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT--ND---PVLNAKTLP-DN-VFIQKWYP---QTDILA 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~--~~---~~~~~~~~~-~n-v~~~~~~p---~~~~l~ 101 (174)
++.|.+..|+......++.+.+.++++.+...++++++..++. +. .++.+ ..+ .+ +-+.+-.+ ...++
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~-~~~~~~~~~l~g~~sL~el~ali- 258 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQ-GCQTPRVTSLAGKLTLPQLAALI- 258 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHh-hCCCCcccccCCCCCHHHHHHHH-
Confidence 5788888888765556889999999999987778877766543 11 11111 111 12 22233222 23345
Q ss_pred CCCccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 102 HPNLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
..|+++|+.- .|.++=|.+.|+|.|.+
T Consensus 259 -~~a~l~Vs~D-SGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 -DHARLFIGVD-SVPMHMAAALGTPLVAL 285 (344)
T ss_pred -HhCCEEEecC-CHHHHHHHHcCCCEEEE
Confidence 7799999994 57899999999999988
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.48 E-value=0.48 Score=37.83 Aligned_cols=138 Identities=8% Similarity=0.070 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-----ccccc-CCCCCEEEeecCC---chhhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-----VLNAK-TLPDNVFIQKWYP---QTDILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-----~~~~~-~~~~nv~~~~~~p---~~~~l~~ 102 (174)
++.|.+..|+......++.+.+.++++.|.+.++++++..++.+.+ ++.+. ..+..+-+.+-.+ ...++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali-- 260 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI-- 260 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH--
Confidence 5788899998766566899999999999987788888776643211 11110 0112222333333 23345
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEec--cccchHH----HHHHHHHH--cCceeE---ec-----CCCCCHHHHHHHH
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGV--PFFGDQY----RNMVLLRH--RGYALI---EP-----IQTLTKQSFLKNA 166 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~v--P~~~dQ~----~na~~l~~--~G~g~~---l~-----~~~~~~~~l~~al 166 (174)
..|+++|+.-. |-++=|.+.|+|.|.+ |....++ .++..+.. ...+-. .. -++.+++++.+++
T Consensus 261 ~~a~l~v~nDS-Gp~HlAaA~g~P~v~lfGpt~p~~~~P~~~~~~v~~~~~~~~~pc~~~~~~~~~Cm~~I~~~~V~~~~ 339 (352)
T PRK10422 261 DHAQLFIGVDS-APAHIAAAVNTPLICLFGATDHIFWRPWSDNMIQFWAGDYQEMPTRDELDRNEKYLSVIPAADVIAAV 339 (352)
T ss_pred HhCCEEEecCC-HHHHHHHHcCCCEEEEECCCCccccCCCCCCeeEEECCCcccCcCcccCCccccHhhcCCHHHHHHHH
Confidence 67999999876 5788888999999988 5432111 01100100 000000 00 1247899999999
Q ss_pred HHhhcC
Q psy16939 167 QTMLND 172 (174)
Q Consensus 167 ~~ll~~ 172 (174)
++++.+
T Consensus 340 ~~ll~~ 345 (352)
T PRK10422 340 DKLLPS 345 (352)
T ss_pred HHHHhc
Confidence 998864
No 131
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.43 E-value=2.3 Score=35.19 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred HHHHhcCC-CCeEEEEcCCCcCC-CCC--C----HHHHHHHHHHHhhCCCcEEEEecCC--------CCc---ccccc-C
Q psy16939 24 QQRADAAK-GGFVYMSFGSVVDP-TKL--S----EETKLGFLEVFKQLKLPIFWKIDIT--------NDP---VLNAK-T 83 (174)
Q Consensus 24 ~~~~~~~~-~~~v~vs~Gs~~~~-~~~--~----~~~~~~i~~~l~~~~~~~i~~~~~~--------~~~---~~~~~-~ 83 (174)
..|+...+ ++.|.|+....... ... . .+.+.++++.+.+.++++++..... +.. ++.+. .
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 35555433 67888887765411 000 1 2344555666656688777654321 100 01110 1
Q ss_pred CCCCEEE-ee-cCCch--hhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE-ecCCCCC
Q psy16939 84 LPDNVFI-QK-WYPQT--DILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI-EPIQTLT 158 (174)
Q Consensus 84 ~~~nv~~-~~-~~p~~--~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~-l~~~~~~ 158 (174)
.+.++++ .+ +-+.. .++ .+||++|..= ..++.-|+..|+|++.+++ | +-....++..|.... ++.++++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iI--s~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~ 378 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKIL--GACELTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLL 378 (426)
T ss_pred cccceeEecCCCChHHHHHHH--hhCCEEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCC
Confidence 1233333 22 33332 455 7799999753 4456777889999999987 2 444456688888765 6677888
Q ss_pred HHHHHHHHHHhhcC
Q psy16939 159 KQSFLKNAQTMLND 172 (174)
Q Consensus 159 ~~~l~~al~~ll~~ 172 (174)
.++|.+.+++++++
T Consensus 379 ~~~Li~~v~~~~~~ 392 (426)
T PRK10017 379 DGSLQAMVADTLGQ 392 (426)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999998876
No 132
>PRK14099 glycogen synthase; Provisional
Probab=94.11 E-value=0.7 Score=38.81 Aligned_cols=131 Identities=7% Similarity=-0.062 Sum_probs=65.8
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-Cc----cccccCCCCCE-EEeecCCchhhhcCCCcc
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DP----VLNAKTLPDNV-FIQKWYPQTDILAHPNLR 106 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~----~~~~~~~~~nv-~~~~~~p~~~~l~~~~~~ 106 (174)
.+++...|...... ..+.+-+.+..+.+.+.++++...+.. .. ++.+ ..+.++ .+.+|-....-+.+..+|
T Consensus 295 ~~li~~VgRL~~~K--G~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~-~~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 295 ALLLGVISRLSWQK--GLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQ-AYPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred CcEEEEEecCCccc--cHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHH-HCCCCEEEEeCCCHHHHHHHHhcCC
Confidence 34555567665321 223333333333333567766654431 11 1111 234555 566663222222125699
Q ss_pred EEEec----CChhhHHHHHHcCCCeEeccccc--hHHHHHH-HHHH--cCceeEecCCCCCHHHHHHHHHH
Q psy16939 107 LFITH----GGISSLMEASSLGVPVLGVPFFG--DQYRNMV-LLRH--RGYALIEPIQTLTKQSFLKNAQT 168 (174)
Q Consensus 107 ~~I~h----gG~~t~~eal~~g~P~i~vP~~~--dQ~~na~-~l~~--~G~g~~l~~~~~~~~~l~~al~~ 168 (174)
+++.- |=..+.+||+++|+|.|+-...+ |-..... ..+. .+.|..++.. +.+++.+++.+
T Consensus 372 ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~ 440 (485)
T PRK14099 372 ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRK 440 (485)
T ss_pred EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHH
Confidence 99963 22457789999997766643211 2111110 0111 1468877654 68889998886
No 133
>PLN00142 sucrose synthase
Probab=94.06 E-value=0.57 Score=41.76 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=50.6
Q ss_pred CCCCEEEeecC----CchhhhcC--CCccEEEec---CC-hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEec
Q psy16939 84 LPDNVFIQKWY----PQTDILAH--PNLRLFITH---GG-ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEP 153 (174)
Q Consensus 84 ~~~nv~~~~~~----p~~~~l~~--~~~~~~I~h---gG-~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~ 153 (174)
+.+++.+.++. +..+++.+ ..+|+|+.- -| ..++.||+++|+|+|.-...+ ....+++-..|..++
T Consensus 640 L~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~ 715 (815)
T PLN00142 640 LKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHID 715 (815)
T ss_pred CCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeC
Confidence 45677776643 22344321 246888864 22 358999999999998865433 334555556788887
Q ss_pred CCCCCHHHHHHHHHHh
Q psy16939 154 IQTLTKQSFLKNAQTM 169 (174)
Q Consensus 154 ~~~~~~~~l~~al~~l 169 (174)
.. +.+++.++|.++
T Consensus 716 P~--D~eaLA~aI~~l 729 (815)
T PLN00142 716 PY--HGDEAANKIADF 729 (815)
T ss_pred CC--CHHHHHHHHHHH
Confidence 54 567777776654
No 134
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.05 E-value=0.24 Score=39.41 Aligned_cols=137 Identities=14% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCeEEEEcC-CCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc---ccccCCCCCEEEeecCCc---hhhhcCCC
Q psy16939 32 GGFVYMSFG-SVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV---LNAKTLPDNVFIQKWYPQ---TDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~G-s~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~---~~~~~~~~nv~~~~~~p~---~~~l~~~~ 104 (174)
++.|+++.| |......++.+.+.++++.+.+.++++++..++++.+. +.. ..+..+.+.+-.+. ..++ ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-~~~~~~~l~~k~sL~e~~~li--~~ 251 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-GLPNAVILAGKTSLEELAALI--AG 251 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-hcCCccccCCCCCHHHHHHHH--hc
Confidence 589999999 55465668999999999999999977777666533221 111 22222224443332 2344 67
Q ss_pred ccEEEecCChhhHHHHHHcCCCeEec--cccchH----HHHHH---------HHHHcCceeEecCCCCCHHHHHHHHHHh
Q psy16939 105 LRLFITHGGISSLMEASSLGVPVLGV--PFFGDQ----YRNMV---------LLRHRGYALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~i~v--P~~~dQ----~~na~---------~l~~~G~g~~l~~~~~~~~~l~~al~~l 169 (174)
||++|+.-. |-++=|.+.|+|.|.+ |....+ ..+.. .....| +-.-..++.+.+.+.+++..+
T Consensus 252 a~l~I~~DS-g~~HlAaA~~~P~I~iyg~t~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~~~~~ 329 (334)
T COG0859 252 ADLVIGNDS-GPMHLAAALGTPTIALYGPTSPAFTPPPDPKLPGISGNLDCSPCKPSG-GHHECLKDIEPEKVLEAAEAL 329 (334)
T ss_pred CCEEEccCC-hHHHHHHHcCCCEEEEECCCCccccCCCCccceEeecccccccccccc-chhcccccCCHHHHHHHHHHH
Confidence 999998775 5788888999999998 332111 11111 111111 111112356788888888887
Q ss_pred hcCC
Q psy16939 170 LNDP 173 (174)
Q Consensus 170 l~~~ 173 (174)
+..+
T Consensus 330 ~~~~ 333 (334)
T COG0859 330 LATK 333 (334)
T ss_pred hhcc
Confidence 7654
No 135
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.91 E-value=0.21 Score=42.25 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=55.5
Q ss_pred CCEEEeecCCc---hhhhcCCCccEEEecC---ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCH
Q psy16939 86 DNVFIQKWYPQ---TDILAHPNLRLFITHG---GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTK 159 (174)
Q Consensus 86 ~nv~~~~~~p~---~~~l~~~~~~~~I~hg---G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~ 159 (174)
..+.+.++.+. ...+ ..+.++|.-+ |.++..||+.+|+|+| .......++...=|..+. +.
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CH
Confidence 57778887663 3345 7799999866 6779999999999999 222345555556666663 68
Q ss_pred HHHHHHHHHhhcCC
Q psy16939 160 QSFLKNAQTMLNDP 173 (174)
Q Consensus 160 ~~l~~al~~ll~~~ 173 (174)
++|.+++..+|.++
T Consensus 476 ~~l~~al~~~L~~~ 489 (519)
T TIGR03713 476 SELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHhCH
Confidence 89999999988774
No 136
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=93.68 E-value=0.11 Score=39.05 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC-cc----ccccCCC-CCEEEeecCCch---hhhcC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND-PV----LNAKTLP-DNVFIQKWYPQT---DILAH 102 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~-~~----~~~~~~~-~nv~~~~~~p~~---~~l~~ 102 (174)
++.|++..|+......++.+.+.++++.+.+.++++++..++.+. .+ +.. ..+ ..+.+.+-.+.. .++
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~e~~ali-- 181 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-GLQNPVINLAGKTSLRELAALI-- 181 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-THTTTTEEETTTS-HHHHHHHH--
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-hcccceEeecCCCCHHHHHHHH--
Confidence 688999998877656688999999999999888777776655441 11 111 112 134444433333 355
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
..||++|+.-. |.++=|.+.|+|+|.+
T Consensus 182 ~~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 SRADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HTSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred hcCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 67999999886 5788899999999998
No 137
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=93.62 E-value=1.7 Score=38.75 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCC------Cc------c----ccccCCCCCEEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITN------DP------V----LNAKTLPDNVFI 90 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~------~~------~----~~~~~~~~nv~~ 90 (174)
.+.++++.|-... ..-+..+++++.+. ..++++..++.. .+ + ..+..+.+++.+
T Consensus 549 ~kpiIl~VGRL~~-----~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~f 623 (784)
T TIGR02470 549 NKPIIFSMARLDR-----VKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRW 623 (784)
T ss_pred CCcEEEEEeCCCc-----cCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3456777887754 22355566665443 235555554321 00 0 001134578888
Q ss_pred eecC-Cc---hhhhcC--CCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHH
Q psy16939 91 QKWY-PQ---TDILAH--PNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQ 160 (174)
Q Consensus 91 ~~~~-p~---~~~l~~--~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~ 160 (174)
.++. +. ..++.+ ..+|+||.-. -..++.||+++|+|+|.-...+ .+..+++-.-|..++.. +.+
T Consensus 624 lG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp~--D~e 697 (784)
T TIGR02470 624 IGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDPY--HGE 697 (784)
T ss_pred ccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHH
Confidence 8874 32 233321 2457888643 3468999999999999864432 33455555678888654 578
Q ss_pred HHHHHHHHhh
Q psy16939 161 SFLKNAQTML 170 (174)
Q Consensus 161 ~l~~al~~ll 170 (174)
++.+++.+++
T Consensus 698 aLA~aL~~ll 707 (784)
T TIGR02470 698 EAAEKIVDFF 707 (784)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.36 E-value=0.55 Score=36.99 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CC---ccccccCCCCCEEEeecCC---chhhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-ND---PVLNAKTLPDNVFIQKWYP---QTDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~---~~~~~~~~~~nv~~~~~~p---~~~~l~~~~ 104 (174)
++.|++..|+......++.+.+.++++.+.+.+.++++..|+. +. .++.+ .. .++.+.+-.+ ...++ ..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~-~~-~~~~l~g~~sL~elaali--~~ 253 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAE-GF-PYVEVLPKLSLEQVARVL--AG 253 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHc-cC-CcceecCCCCHHHHHHHH--Hh
Confidence 4566555555443345899999999999987777877654432 21 11111 11 2333433333 22344 77
Q ss_pred ccEEEecCChhhHHHHHHcCCCeEec--cccchHH----HHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 105 LRLFITHGGISSLMEASSLGVPVLGV--PFFGDQY----RNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~i~v--P~~~dQ~----~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
||++|+.-. |.++=|.+.|+|++.+ |...... .|...+... ... -.+.+++++.++++++|+
T Consensus 254 a~l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~--~~c--m~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKAVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSP--GKS--MADLSAETVFQKLETLIS 321 (322)
T ss_pred CCEEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCC--Ccc--cccCCHHHHHHHHHHHhh
Confidence 999999886 5788899999999998 5422110 011111100 111 246799999999999875
No 139
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=93.30 E-value=1.7 Score=36.23 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=48.6
Q ss_pred EeecCCchhhhcC-CCccEEEec---CC-hhhHHHHHHcCCC---eEeccccchHHHHHHHHHHcCceeEecCCCCCHHH
Q psy16939 90 IQKWYPQTDILAH-PNLRLFITH---GG-ISSLMEASSLGVP---VLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQS 161 (174)
Q Consensus 90 ~~~~~p~~~~l~~-~~~~~~I~h---gG-~~t~~eal~~g~P---~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~ 161 (174)
+.+++++.++..+ ..||+++.- -| ..++.||+++|+| .+++....--... ..-|+.++.. +.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~--d~~~ 416 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPY--DIDE 416 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCC--CHHH
Confidence 3456676654332 789999963 33 4567899999999 4444332211100 2346676543 6899
Q ss_pred HHHHHHHhhcCC
Q psy16939 162 FLKNAQTMLNDP 173 (174)
Q Consensus 162 l~~al~~ll~~~ 173 (174)
+.+++.++++++
T Consensus 417 la~ai~~~l~~~ 428 (460)
T cd03788 417 VADAIHRALTMP 428 (460)
T ss_pred HHHHHHHHHcCC
Confidence 999999998764
No 140
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.09 E-value=0.5 Score=37.65 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCc-CCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc---cccccCCCC----C-EEEeecCCch---hh
Q psy16939 32 GGFVYMSFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP---VLNAKTLPD----N-VFIQKWYPQT---DI 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~-~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~---~~~~~~~~~----n-v~~~~~~p~~---~~ 99 (174)
++.|.+..|+.. ....++.+.+.++++.+...+.++++..++.+.+ ++.+ ..+. + +-+.+-.+.. .+
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-ALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-hcccccccceeeccCCCCHHHHHHH
Confidence 588999998853 3446899999999999876677877765543322 1111 1111 1 2223333322 34
Q ss_pred hcCCCccEEEecCChhhHHHHHHcCCCeEec--cccchHHH----HHHHHHHc-Cce----------eEecCCCCCHHHH
Q psy16939 100 LAHPNLRLFITHGGISSLMEASSLGVPVLGV--PFFGDQYR----NMVLLRHR-GYA----------LIEPIQTLTKQSF 162 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v--P~~~dQ~~----na~~l~~~-G~g----------~~l~~~~~~~~~l 162 (174)
+ ..|+++|+.-. |-++=|.+.|+|++.+ |....... +...+... +.. -.---++.+++++
T Consensus 259 i--~~a~l~I~nDT-Gp~HlAaA~g~P~valfGpt~p~~~~P~~~~~~vi~~~~~~~~~~~~~c~~~~~~cm~~I~~~~V 335 (348)
T PRK10916 259 I--AACKAIVTNDS-GLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRV 335 (348)
T ss_pred H--HhCCEEEecCC-hHHHHHHHhCCCEEEEECCCCccccCCCCCCeEEEEccCCcccccCCCCCCchhhhhhhCCHHHH
Confidence 5 67999999875 5788899999999987 54221110 00101100 000 0000134689999
Q ss_pred HHHHHHhhcCC
Q psy16939 163 LKNAQTMLNDP 173 (174)
Q Consensus 163 ~~al~~ll~~~ 173 (174)
.+++++++...
T Consensus 336 ~~~~~~ll~~~ 346 (348)
T PRK10916 336 LEELNALLLQE 346 (348)
T ss_pred HHHHHHHhhcc
Confidence 99999998763
No 141
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.04 E-value=0.66 Score=36.60 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCC---CCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEE-eecC
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDP---TKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFI-QKWY 94 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~---~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~-~~~~ 94 (174)
+++-+-+.-.+ .+.|+.=.=+.... .+-..+....+++.|...+ ++...... ..++.+ .-.|+.+ .+-+
T Consensus 170 ~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~~~eife--~~~n~i~pk~~v 244 (346)
T COG1817 170 PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKEQAEIFE--GYRNIIIPKKAV 244 (346)
T ss_pred HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc---EEEecCchhHHHHHh--hhccccCCcccc
Confidence 34444444444 46777655443322 1123445788888887777 44344332 222222 2233332 3345
Q ss_pred CchhhhcCCCccEEEecCChhhHHHHHHcCCCeEec-cccchHHHHHHHHHHcCcee
Q psy16939 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYAL 150 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~ 150 (174)
+..+++.+ |+++|+-|| +...||...|+|.|.+ |- .-...-+++.+.|.=.
T Consensus 245 D~l~Llyy--a~lvig~gg-TMarEaAlLGtpaIs~~pG--kll~vdk~lie~G~~~ 296 (346)
T COG1817 245 DTLSLLYY--ATLVIGAGG-TMAREAALLGTPAISCYPG--KLLAVDKYLIEKGLLY 296 (346)
T ss_pred cHHHHHhh--hheeecCCc-hHHHHHHHhCCceEEecCC--ccccccHHHHhcCcee
Confidence 66778855 999998777 4788999999999988 42 2222334445555433
No 142
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.99 E-value=1 Score=36.46 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCC-Ccccc--ccCCCCCEEEeecC---CchhhhcCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITN-DPVLN--AKTLPDNVFIQKWY---PQTDILAHPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~-~~~~~--~~~~~~nv~~~~~~---p~~~~l~~~~ 104 (174)
++.+++++=-...-...-.+..+.+.+.++.. ...++.-..... ..++. .-...+++++.+.+ +...++ ..
T Consensus 204 ~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~--~~ 281 (383)
T COG0381 204 KKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLM--KN 281 (383)
T ss_pred CcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHH--Hh
Confidence 56888887443321111133444444455444 234554443331 11111 11233468887754 555566 56
Q ss_pred ccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 105 LRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|-+++|-.|. ..-||...|+|++++=..-+++. ..++|.-+.+.. +.+.+.+++.++++++
T Consensus 282 a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg~---~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 282 AFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVGT---DEENILDAATELLEDE 342 (383)
T ss_pred ceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeCc---cHHHHHHHHHHHhhCh
Confidence 9999999984 68899999999999966666665 334566666643 5688999998888764
No 143
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=92.65 E-value=0.74 Score=35.35 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCcCC-----CCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCc----c-cccc-CCCCCEEEeecCCchhh
Q psy16939 32 GGFVYMSFGSVVDP-----TKLSEETKLGFLEVFKQL-KLPIFWKIDITNDP----V-LNAK-TLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~-----~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~----~-~~~~-~~~~nv~~~~~~p~~~~ 99 (174)
++.|+|-+-...-. ........+.+.+.++.. +.++++...+.... + +... .....+.+.+-.+-.++
T Consensus 117 ~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 196 (269)
T PF05159_consen 117 KKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYEL 196 (269)
T ss_pred CCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHH
Confidence 67788776433210 001123344444455444 35677766552110 1 1110 12334445556788888
Q ss_pred hcCCCccEEEecCChhhHHHHHHcCCCeEecc
Q psy16939 100 LAHPNLRLFITHGGISSLMEASSLGVPVLGVP 131 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP 131 (174)
+ ..||.+||-.+. +-.||+.+|+|++++-
T Consensus 197 l--~~s~~VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 197 L--EQSDAVVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred H--HhCCEEEEECCH-HHHHHHHcCCceEEec
Confidence 8 679999999985 8999999999999984
No 144
>KOG4626|consensus
Probab=92.39 E-value=0.9 Score=39.27 Aligned_cols=118 Identities=16% Similarity=0.234 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc--c----cc-cCCCCCEEEeecCCchhh-----
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV--L----NA-KTLPDNVFIQKWYPQTDI----- 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~--~----~~-~~~~~nv~~~~~~p~~~~----- 99 (174)
..+||.+|--... +.++.++.-.+.|++.|..++|..+.....+ | .+ .--|+++.+.+-....+-
T Consensus 758 d~vvf~~FNqLyK---idP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 758 DAVVFCNFNQLYK---IDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred CeEEEeechhhhc---CCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 4677777766655 7889999999999999999999876532111 1 00 023556666665443322
Q ss_pred hcCCCccEEEecCChhhHHHHHHcCCCeEeccccchH-HHHHHHHHHcCceeEec
Q psy16939 100 LAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ-YRNMVLLRHRGYALIEP 153 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ-~~na~~l~~~G~g~~l~ 153 (174)
|+.-..|-..+. |..|.+|.+..|+|||..|.--.- ..-+..+...|+|-.+-
T Consensus 835 LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 835 LADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred hhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 211223444555 457899999999999999974433 33344556678887654
No 145
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.25 E-value=0.24 Score=39.95 Aligned_cols=148 Identities=10% Similarity=0.046 Sum_probs=81.0
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh-hCC-CcEEEEecCCCCccccccCC--C---CCEEEeec
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFK-QLK-LPIFWKIDITNDPVLNAKTL--P---DNVFIQKW 93 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~-~~~-~~~i~~~~~~~~~~~~~~~~--~---~nv~~~~~ 93 (174)
.+.+-+.... ++++.+..||.......--..+.+.++.+. +.+ .+|++-.......+...... . .+..+.+.
T Consensus 177 ~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (381)
T COG0763 177 AAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG 256 (381)
T ss_pred HHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCc
Confidence 3444443333 789999999986521111122333333333 333 47887766543221100011 1 22222221
Q ss_pred CCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccc-cchHHHHHHHHHHcCce----eEe--------cCCCCCHH
Q psy16939 94 YPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPF-FGDQYRNMVLLRHRGYA----LIE--------PIQTLTKQ 160 (174)
Q Consensus 94 ~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~-~~dQ~~na~~l~~~G~g----~~l--------~~~~~~~~ 160 (174)
- ..+.+ ..||+++..+|. .+.|+..+|+|||+.=. ..=-+.-++++.+.... +.+ -.++.+++
T Consensus 257 ~-~~~a~--~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe 332 (381)
T COG0763 257 E-KRKAF--AAADAALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPE 332 (381)
T ss_pred h-HHHHH--HHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHH
Confidence 1 22345 679999999995 67899999999998722 11223345555543322 111 12467899
Q ss_pred HHHHHHHHhhcCC
Q psy16939 161 SFLKNAQTMLNDP 173 (174)
Q Consensus 161 ~l~~al~~ll~~~ 173 (174)
.|.+++..++.|+
T Consensus 333 ~la~~l~~ll~~~ 345 (381)
T COG0763 333 NLARALEELLLNG 345 (381)
T ss_pred HHHHHHHHHhcCh
Confidence 9999999998875
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=92.24 E-value=2.8 Score=38.13 Aligned_cols=133 Identities=11% Similarity=-0.054 Sum_probs=74.3
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC------ccccc-cCCCCCEEEeecCCch---hhhcC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND------PVLNA-KTLPDNVFIQKWYPQT---DILAH 102 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~------~~~~~-~~~~~nv~~~~~~p~~---~~l~~ 102 (174)
.+++...|...... ..+.+.+.+..+...+.++++...+... ..+.. ....+++.+..+++.. .++
T Consensus 779 ~pLIg~VGRL~~QK--GiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IY-- 854 (977)
T PLN02939 779 QPLVGCITRLVPQK--GVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIY-- 854 (977)
T ss_pred ceEEEEeecCCccc--ChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHH--
Confidence 35666777765421 2223333232222345677776544221 11111 1235678888887764 355
Q ss_pred CCccEEEecC----ChhhHHHHHHcCCCeEeccccc--hHHHH--HHHH-HHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 103 PNLRLFITHG----GISSLMEASSLGVPVLGVPFFG--DQYRN--MVLL-RHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 103 ~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~--dQ~~n--a~~l-~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
+.+|+|+.-. -..+.+||+++|+|.|+-...+ |...+ ...+ +.-+-|..+... +.+++..++.+++.
T Consensus 855 AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~--D~eaLa~AL~rAL~ 930 (977)
T PLN02939 855 AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP--DEQGLNSALERAFN 930 (977)
T ss_pred HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC--CHHHHHHHHHHHHH
Confidence 7899999752 2458999999999998765432 21111 0111 112567776543 67888888877653
No 147
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=92.23 E-value=2.1 Score=34.30 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=53.9
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcc-ccccCCCCCEEEeec--CC--------------
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPV-LNAKTLPDNVFIQKW--YP-------------- 95 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~nv~~~~~--~p-------------- 95 (174)
++++.+.||.+. ---.-++++.|++.+++++|.......+. +.. ...-.+...+. ++
T Consensus 3 ~i~~~~GGTGGH-----i~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGH-----VTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE-KENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHH-----HHHHHHHHHHHHhCCCEEEEEECCCccccccCc-ccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 445555555543 22355667777777889988876544332 100 00011111111 11
Q ss_pred ------chhhhcCCCccEEEecCChhh---HHHHHHcCCCeEec
Q psy16939 96 ------QTDILAHPNLRLFITHGGISS---LMEASSLGVPVLGV 130 (174)
Q Consensus 96 ------~~~~l~~~~~~~~I~hgG~~t---~~eal~~g~P~i~v 130 (174)
-..++..-+-|++|++||+-+ +..|...|+|.++.
T Consensus 77 ~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 012244467899999999986 89999999999886
No 148
>PLN02316 synthase/transferase
Probab=91.75 E-value=4.6 Score=37.22 Aligned_cols=134 Identities=6% Similarity=-0.141 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC------cccccc---CCCCCEEEeecCCch---hhh
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND------PVLNAK---TLPDNVFIQKWYPQT---DIL 100 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~------~~~~~~---~~~~nv~~~~~~p~~---~~l 100 (174)
.+++...|-.... -..+.+...+..+.+.+.++++...+... ..+... ..++++.+....+.. .++
T Consensus 840 ~plVg~VGRL~~q--KGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 840 LPLVGIITRLTHQ--KGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred CeEEEEEeccccc--cCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 4566667776542 12233333233222335677775543221 111110 125677776555543 345
Q ss_pred cCCCccEEEec----CChhhHHHHHHcCCCeEeccccc--hHHHHH----HHHHH---cCceeEecCCCCCHHHHHHHHH
Q psy16939 101 AHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFG--DQYRNM----VLLRH---RGYALIEPIQTLTKQSFLKNAQ 167 (174)
Q Consensus 101 ~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~--dQ~~na----~~l~~---~G~g~~l~~~~~~~~~l~~al~ 167 (174)
..+|+++.- +=..+.+||+++|+|.|+-...+ |..... ..-+. .+-|..++. .+++.|..+|.
T Consensus 918 --aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~--~d~~aLa~AL~ 993 (1036)
T PLN02316 918 --AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDG--ADAAGVDYALN 993 (1036)
T ss_pred --HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCC--CCHHHHHHHHH
Confidence 889999954 22468999999999888754321 221111 00011 246777754 36788888888
Q ss_pred HhhcC
Q psy16939 168 TMLND 172 (174)
Q Consensus 168 ~ll~~ 172 (174)
+++.+
T Consensus 994 raL~~ 998 (1036)
T PLN02316 994 RAISA 998 (1036)
T ss_pred HHHhh
Confidence 88764
No 149
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=91.25 E-value=6.7 Score=31.57 Aligned_cols=149 Identities=17% Similarity=0.108 Sum_probs=86.8
Q ss_pred CChHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE--ecCCC--Cc-cc----cccCCCCC
Q psy16939 18 DGLSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK--IDITN--DP-VL----NAKTLPDN 87 (174)
Q Consensus 18 ~~~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~--~~~~~--~~-~~----~~~~~~~n 87 (174)
+++..+..--.... +..+-|-.|.++..++.-.+.++++.+-+ ..+.++++- ++... .. ++ .+....++
T Consensus 168 ~m~~~~~~~~~~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~-~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~ 246 (360)
T PF07429_consen 168 RMDPALTLSEKNKKNKGKLTILVGNSGDPSNNHIEALEALKQQF-GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAEN 246 (360)
T ss_pred CCchhhhccccccCCCCceEEEEcCCCCCCccHHHHHHHHHHhc-CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccc
Confidence 34454433322222 45666777777653322233344443322 123455553 44321 10 00 00012357
Q ss_pred EEE-eecCCchhhhcC-CCccEEEec----CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHH
Q psy16939 88 VFI-QKWYPQTDILAH-PNLRLFITH----GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQS 161 (174)
Q Consensus 88 v~~-~~~~p~~~~l~~-~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~ 161 (174)
+.+ .+++|..+.+.. .+||+.|-. =|.|+++-.+..|+|+++--. -+. -..+.+.|+-+....++++...
T Consensus 247 ~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~---np~-~~~l~~~~ipVlf~~d~L~~~~ 322 (360)
T PF07429_consen 247 FQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD---NPF-WQDLKEQGIPVLFYGDELDEAL 322 (360)
T ss_pred eeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC---ChH-HHHHHhCCCeEEeccccCCHHH
Confidence 765 468886553322 789998865 489999999999999988732 222 3567777888887778899999
Q ss_pred HHHHHHHhhc
Q psy16939 162 FLKNAQTMLN 171 (174)
Q Consensus 162 l~~al~~ll~ 171 (174)
++++=+++..
T Consensus 323 v~ea~rql~~ 332 (360)
T PF07429_consen 323 VREAQRQLAN 332 (360)
T ss_pred HHHHHHHHhh
Confidence 9998887754
No 150
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=91.23 E-value=3.1 Score=32.61 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHc----C
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSL----G 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~----g 124 (174)
..+.+..+.+.+++.+..+.+........ . ..+ ....+..+.- ..+|++|+-||-||+.+++.. +
T Consensus 19 ~~e~~~~i~~~L~~~g~~v~v~~~~~~~~-----~-~~~---~~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~ 87 (291)
T PRK02155 19 IAEPLESLAAFLAKRGFEVVFEADTARNI-----G-LTG---YPALTPEEIG--ARADLAVVLGGDGTMLGIGRQLAPYG 87 (291)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhc-----C-ccc---ccccChhHhc--cCCCEEEEECCcHHHHHHHHHhcCCC
Confidence 35668888888888888777643211100 0 000 0001222222 468999999999999999763 6
Q ss_pred CCeEecc
Q psy16939 125 VPVLGVP 131 (174)
Q Consensus 125 ~P~i~vP 131 (174)
+|++.+-
T Consensus 88 ~pilGIn 94 (291)
T PRK02155 88 VPLIGIN 94 (291)
T ss_pred CCEEEEc
Confidence 7888775
No 151
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=90.53 E-value=3.6 Score=29.21 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=53.7
Q ss_pred hHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeec-CCchh
Q psy16939 20 LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW-YPQTD 98 (174)
Q Consensus 20 ~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~-~p~~~ 98 (174)
..++-+++.+. +..+++.|.. ..+..+.++..+.+-+++=..+...... . .........++ .+...
T Consensus 20 A~~lg~~La~~--g~~lv~Gg~~--------GlM~a~a~ga~~~gg~viGVlp~~l~~~--~-~~~~~~i~~~~~~~Rk~ 86 (159)
T TIGR00725 20 AYRLGKELAKK--GHILINGGRT--------GVMEAVSKGAREAGGLVVGILPDEDFAG--N-PYLTIKVKTGMNFARNF 86 (159)
T ss_pred HHHHHHHHHHC--CCEEEcCCch--------hHHHHHHHHHHHCCCeEEEECChhhccC--C-CCceEEEECCCcchHHH
Confidence 34556666554 4677774433 3466677666666665554444322110 0 11112222333 34444
Q ss_pred hhcCCCccEEE-ecCChhhHHH---HHHcCCCeEeccc
Q psy16939 99 ILAHPNLRLFI-THGGISSLME---ASSLGVPVLGVPF 132 (174)
Q Consensus 99 ~l~~~~~~~~I-~hgG~~t~~e---al~~g~P~i~vP~ 132 (174)
++. ..+|++| --||.||+-| ++.+++|+++++.
T Consensus 87 ~m~-~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 87 ILV-RSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHH-HHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 443 4555554 4577777655 5889999999975
No 152
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=90.39 E-value=1 Score=28.32 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=37.9
Q ss_pred cCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcC-ceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 111 HGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRG-YALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 111 hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G-~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+|-...+.|++++|+|+|.-+. ......+ ..| -++..+ +.+++.+++..+++||
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~~~~~~~~~----~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-EDGEHIITYN----DPEELAEKIEYLLENP 63 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CCCCeEEEEC----CHHHHHHHHHHHHCCH
Confidence 4556689999999999999854 2222222 224 344443 7899999999999875
No 153
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=89.46 E-value=6.4 Score=28.50 Aligned_cols=117 Identities=11% Similarity=-0.005 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-cccccCCCCCEEEeecCC-chh
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-VLNAKTLPDNVFIQKWYP-QTD 98 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~nv~~~~~~p-~~~ 98 (174)
.++-+++.+. ...+|+.|+. ...+..+.++..+.+-+++=........ +... .........+.+. ...
T Consensus 22 ~~lG~~la~~--g~~lV~GGg~-------~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~-~~~~~~i~~~~~~~Rk~ 91 (178)
T TIGR00730 22 AELGAYLAGQ--GWGLVYGGGR-------VGLMGAIADAAMENGGTAVGVNPSGLFSGEVVH-QNLTELIEVNGMHERKA 91 (178)
T ss_pred HHHHHHHHHC--CCEEEECCCh-------HhHHHHHHHHHHhcCCeEEEecchhhhhhhccC-CCCCceEEECCHHHHHH
Confidence 3455566554 5778888763 2347777777776666554433221110 0000 1122334444443 334
Q ss_pred hhcCCCccEEE-ecCChhhHHHHHH---------cCCCeEeccc--cchH-HHHHHHHHHcCc
Q psy16939 99 ILAHPNLRLFI-THGGISSLMEASS---------LGVPVLGVPF--FGDQ-YRNMVLLRHRGY 148 (174)
Q Consensus 99 ~l~~~~~~~~I-~hgG~~t~~eal~---------~g~P~i~vP~--~~dQ-~~na~~l~~~G~ 148 (174)
+|. ..+|++| --||.||+-|... +.+|++++-. ++|. ...-+.+.+.|.
T Consensus 92 ~m~-~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 92 MMA-ELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHH-HhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 443 4566655 4677999988743 4999999832 2333 223345556664
No 154
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.79 E-value=5.9 Score=30.99 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH----cC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS----LG 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~----~g 124 (174)
..+..+++.+.|++.+..+++...... ..... .+ +..++. ..+|++|+-||-||+..+.. .+
T Consensus 23 ~~~~~~~i~~~l~~~g~~~~~~~~~~~-------~~~~~----~~-~~~~~~--~~~Dlvi~iGGDGT~L~aa~~~~~~~ 88 (287)
T PRK14077 23 LDKEILKLQKILSIYKVEILLEKESAE-------ILDLP----GY-GLDELF--KISDFLISLGGDGTLISLCRKAAEYD 88 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh-------hhccc----cc-chhhcc--cCCCEEEEECCCHHHHHHHHHhcCCC
Confidence 466788888888877777666322111 01000 00 112222 46999999999999987755 37
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|++.+-.
T Consensus 89 ~PilGIN~ 96 (287)
T PRK14077 89 KFVLGIHA 96 (287)
T ss_pred CcEEEEeC
Confidence 89888853
No 155
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.33 E-value=1.7 Score=36.06 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEecCCCCccccc-cCCCCCEEEeec-CC--chhhhcCCCccEEE--ecC--ChhhHHHH
Q psy16939 50 EETKLGFLEVFKQLKL-PIFWKIDITNDPVLNA-KTLPDNVFIQKW-YP--QTDILAHPNLRLFI--THG--GISSLMEA 120 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~-~~~~~nv~~~~~-~p--~~~~l~~~~~~~~I--~hg--G~~t~~ea 120 (174)
...++.+.....++|. +|-+.++.+-.+++.. .+. +|+...+- .+ ..+++ ..||+.+ +|| -..++.||
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly--~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELY--QTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHH--HhccEEEEccccccHHHHHHHH
Confidence 4557777777777765 6665444331122111 133 66666665 44 33455 5666654 454 47899999
Q ss_pred HHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 121 SSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 121 l~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+.+|+|++..=...+.. ..+.. |..+..+ +.+++.++|+++|+++
T Consensus 368 ~~~G~pI~afd~t~~~~---~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 368 FEYNLLILGFEETAHNR---DFIAS---ENIFEHN--EVDQLISKLKDLLNDP 412 (438)
T ss_pred HHcCCcEEEEecccCCc---ccccC---CceecCC--CHHHHHHHHHHHhcCH
Confidence 99999999874332211 12222 4444333 5788999999888775
No 156
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.21 E-value=9.2 Score=28.73 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=50.4
Q ss_pred CCCEEEeecCCch---hhhcCCCccEEEec---CCh-hhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCC
Q psy16939 85 PDNVFIQKWYPQT---DILAHPNLRLFITH---GGI-SSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTL 157 (174)
Q Consensus 85 ~~nv~~~~~~p~~---~~l~~~~~~~~I~h---gG~-~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~ 157 (174)
..++.+.++++.. .++ ..+++++.. .|. .++.|++++|+|++.-... .....+...+.|......
T Consensus 256 ~~~v~~~g~~~~~~~~~~~--~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~~-- 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELL--ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPPG-- 327 (381)
T ss_pred CCcEEEecccCHHHHHHHH--HhCCEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCCC--
Confidence 4678888888822 234 568888887 244 3469999999999777542 112222222245533222
Q ss_pred CHHHHHHHHHHhhcC
Q psy16939 158 TKQSFLKNAQTMLND 172 (174)
Q Consensus 158 ~~~~l~~al~~ll~~ 172 (174)
..+++.+++..++++
T Consensus 328 ~~~~~~~~i~~~~~~ 342 (381)
T COG0438 328 DVEELADALEQLLED 342 (381)
T ss_pred CHHHHHHHHHHHhcC
Confidence 578888888887765
No 157
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.79 E-value=2.9 Score=34.89 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=49.7
Q ss_pred EeecCCchhhhcC-CCccEEEecC---C-hhhHHHHHHcCCC----eEeccccchHHHHHHHHHHcCceeEecCCCCCHH
Q psy16939 90 IQKWYPQTDILAH-PNLRLFITHG---G-ISSLMEASSLGVP----VLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQ 160 (174)
Q Consensus 90 ~~~~~p~~~~l~~-~~~~~~I~hg---G-~~t~~eal~~g~P----~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~ 160 (174)
+...+++.++.++ ..+|+++.-. | ..++.|++++|+| +|+--..+--. .+ +-|+.+++. +.+
T Consensus 340 l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l---~~gllVnP~--d~~ 410 (456)
T TIGR02400 340 LNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----EL---NGALLVNPY--DID 410 (456)
T ss_pred EcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----Hh---CCcEEECCC--CHH
Confidence 3445666664332 8899999743 5 4578899999999 55544333211 12 246777543 689
Q ss_pred HHHHHHHHhhcCC
Q psy16939 161 SFLKNAQTMLNDP 173 (174)
Q Consensus 161 ~l~~al~~ll~~~ 173 (174)
++.++|.++++++
T Consensus 411 ~lA~aI~~aL~~~ 423 (456)
T TIGR02400 411 GMADAIARALTMP 423 (456)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
No 158
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.71 E-value=7.3 Score=30.81 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCC---CEEEeecCCc-hhhhcCCCccEEEecCChhhHHHHHHc
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPD---NVFIQKWYPQ-TDILAHPNLRLFITHGGISSLMEASSL 123 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~---nv~~~~~~p~-~~~l~~~~~~~~I~hgG~~t~~eal~~ 123 (174)
..+..+++.+.|.+.+..+.+...... ... ..+. ..- ...++. ..+. ..+|++|+=||-||+..+...
T Consensus 19 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~--~~~D~vi~lGGDGT~L~aar~ 91 (306)
T PRK03372 19 ATEAARRVAKQLGDAGIGVRVLDAEAVDLGA----THPAPDDFRA-MEVVDADPDAA--DGCELVLVLGGDGTILRAAEL 91 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeechhhhhcc----cccccccccc-cccccchhhcc--cCCCEEEEEcCCHHHHHHHHH
Confidence 356678888888888877766432111 110 0000 000 011121 2222 468999999999999998753
Q ss_pred ----CCCeEeccc
Q psy16939 124 ----GVPVLGVPF 132 (174)
Q Consensus 124 ----g~P~i~vP~ 132 (174)
++|++.|..
T Consensus 92 ~~~~~~PilGIN~ 104 (306)
T PRK03372 92 ARAADVPVLGVNL 104 (306)
T ss_pred hccCCCcEEEEec
Confidence 789998864
No 159
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.59 E-value=7.3 Score=30.62 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH----cC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS----LG 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~----~g 124 (174)
..+..+++.+.|++.+..+.+.-.... ..+.+- ....+...+- ..+|++|+=||-||+.+++. .+
T Consensus 18 a~e~~~~i~~~L~~~giev~v~~~~~~-------~~~~~~--~~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~ 86 (295)
T PRK01231 18 VVETLRRLKDFLLDRGLEVILDEETAE-------VLPGHG--LQTVSRKLLG--EVCDLVIVVGGDGSLLGAARALARHN 86 (295)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh-------hcCccc--ccccchhhcc--cCCCEEEEEeCcHHHHHHHHHhcCCC
Confidence 466788888888888877655322111 011100 0112222222 35899999999999999875 36
Q ss_pred CCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 125 VPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 125 ~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
+|++.+... .+|-. .+.+.+++.+++.+++++
T Consensus 87 ~Pvlgin~G-------------~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 87 VPVLGINRG-------------RLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCEEEEeCC-------------ccccc---ccCCHHHHHHHHHHHHcC
Confidence 788888641 12211 234567777777777654
No 160
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.98 E-value=9.6 Score=29.26 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH-cCCCe
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS-LGVPV 127 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~-~g~P~ 127 (174)
.....+++.+.+.+.+..+.|..... . .- ..+|++|+=||-||+..++. .++|+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~--~---------------------~~--~~~d~vi~iGGDGT~L~a~~~~~~Pi 65 (256)
T PRK14075 11 KEKEAKFLKEKISKEHEVVEFCEASA--S---------------------GK--VTADLIIVVGGDGTVLKAAKKVGTPL 65 (256)
T ss_pred HHHHHHHHHHHHHHcCCeeEeecccc--c---------------------cc--CCCCEEEEECCcHHHHHHHHHcCCCE
Confidence 45667777777777776666542211 0 01 46899999999999998876 57888
Q ss_pred Eecc
Q psy16939 128 LGVP 131 (174)
Q Consensus 128 i~vP 131 (174)
+.+-
T Consensus 66 lgin 69 (256)
T PRK14075 66 VGFK 69 (256)
T ss_pred EEEe
Confidence 8775
No 161
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.74 E-value=2.2 Score=32.96 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=24.9
Q ss_pred CccEEEecCChhhHHHHHH------cCCCeEeccc
Q psy16939 104 NLRLFITHGGISSLMEASS------LGVPVLGVPF 132 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~------~g~P~i~vP~ 132 (174)
.+|++|+-||-||+..++. .++|++.+..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 4899999999999999975 4789888853
No 162
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.63 E-value=8.4 Score=30.24 Aligned_cols=79 Identities=8% Similarity=0.191 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH----cC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS----LG 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~----~g 124 (174)
..+..+++.+.|++.+..+++............ ....+. ..+.+...+. ..+|++|+=||-||+..+.. .+
T Consensus 14 ~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~--~~~dlvi~lGGDGT~L~aa~~~~~~~ 88 (292)
T PRK01911 14 ASPYIQELFDELEERGAEVLIEEKFLDFLKQDL-KFHPSY--DTFSDNEELD--GSADMVISIGGDGTFLRTATYVGNSN 88 (292)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhhcccc-cccccc--ccccchhhcc--cCCCEEEEECCcHHHHHHHHHhcCCC
Confidence 355678888888888887766432111000000 000000 0010112322 46899999999999998877 37
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|++.+-.
T Consensus 89 ~PilGIN~ 96 (292)
T PRK01911 89 IPILGINT 96 (292)
T ss_pred CCEEEEec
Confidence 89888854
No 163
>PLN02929 NADH kinase
Probab=86.34 E-value=6.1 Score=31.17 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH---cCC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS---LGV 125 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~---~g~ 125 (174)
.++..+.+.+.|++.+..+....+ .++. ... ..+|++|+-||-||+..+.. .++
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r-~~~~--------------------~~~--~~~Dlvi~lGGDGT~L~aa~~~~~~i 88 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLR-NELS--------------------QPI--RDVDLVVAVGGDGTLLQASHFLDDSI 88 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeec-cccc--------------------ccc--CCCCEEEEECCcHHHHHHHHHcCCCC
Confidence 456677788888877776532221 1111 112 56899999999999998844 468
Q ss_pred CeEeccccc------hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 126 PVLGVPFFG------DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 126 P~i~vP~~~------dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
|++.|-... +++.|... +..-.|-... .+.+++.+++++++++
T Consensus 89 PvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 89 PVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred cEEEEECCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHHcC
Confidence 999985421 23333311 1223444432 3678888888888865
No 164
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.09 E-value=9.6 Score=29.98 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCc-cccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH----c
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDP-VLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS----L 123 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~----~ 123 (174)
..+...++.+.|.+.+..+++.-...... .... ..+ +. ...+..++. ..+|++|+=||-||+..+.. .
T Consensus 19 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~--~~~D~vi~lGGDGT~L~aa~~~~~~ 91 (296)
T PRK04539 19 IQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQ-DTV-GC---HIVNKTELG--QYCDLVAVLGGDGTFLSVAREIAPR 91 (296)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecccccccchhcc-ccc-cc---cccchhhcC--cCCCEEEEECCcHHHHHHHHHhccc
Confidence 35667888888888888776632111100 0000 001 11 111222332 36999999999999999864 3
Q ss_pred CCCeEeccc
Q psy16939 124 GVPVLGVPF 132 (174)
Q Consensus 124 g~P~i~vP~ 132 (174)
++|++.+-.
T Consensus 92 ~~PilGIN~ 100 (296)
T PRK04539 92 AVPIIGINQ 100 (296)
T ss_pred CCCEEEEec
Confidence 789988853
No 165
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.90 E-value=9.4 Score=29.96 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH----cC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS----LG 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~----~g 124 (174)
..+..+++.+.|.+.+..+.+........ .. .+ ....+...+. ..+|++|+=||-||+..+.. .+
T Consensus 19 ~~~~~~~i~~~l~~~g~~v~~~~~~~~~~-----~~-~~---~~~~~~~~~~--~~~d~vi~lGGDGT~L~aa~~~~~~~ 87 (292)
T PRK03378 19 ALTTHEMLYHWLTSKGYEVIVEQQIAHEL-----QL-KN---VKTGTLAEIG--QQADLAIVVGGDGNMLGAARVLARYD 87 (292)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhc-----Cc-cc---ccccchhhcC--CCCCEEEEECCcHHHHHHHHHhcCCC
Confidence 35567788888887777766532111100 00 00 0011112222 46999999999999999974 36
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|++.+-.
T Consensus 88 ~Pilgin~ 95 (292)
T PRK03378 88 IKVIGINR 95 (292)
T ss_pred CeEEEEEC
Confidence 78887743
No 166
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.02 E-value=11 Score=33.96 Aligned_cols=72 Identities=15% Similarity=0.018 Sum_probs=47.8
Q ss_pred cCCchhhhcC-CCccEEEecC---Chh-hHHHHHHcCCC---eEeccccchHHHHHHHHHHcC-ceeEecCCCCCHHHHH
Q psy16939 93 WYPQTDILAH-PNLRLFITHG---GIS-SLMEASSLGVP---VLGVPFFGDQYRNMVLLRHRG-YALIEPIQTLTKQSFL 163 (174)
Q Consensus 93 ~~p~~~~l~~-~~~~~~I~hg---G~~-t~~eal~~g~P---~i~vP~~~dQ~~na~~l~~~G-~g~~l~~~~~~~~~l~ 163 (174)
+++..++.++ ..||+++.-. |+| +..|++++|+| +++++.+.- .+.. .| .|+.+++. +.+++.
T Consensus 363 ~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~~---l~~~allVnP~--D~~~lA 434 (797)
T PLN03063 363 SVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQS---LGAGALLVNPW--NITEVS 434 (797)
T ss_pred CCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chhh---hcCCeEEECCC--CHHHHH
Confidence 4555543322 7899999764 655 66799999999 566654321 1111 23 57777654 789999
Q ss_pred HHHHHhhcC
Q psy16939 164 KNAQTMLND 172 (174)
Q Consensus 164 ~al~~ll~~ 172 (174)
++|.++|+.
T Consensus 435 ~AI~~aL~m 443 (797)
T PLN03063 435 SAIKEALNM 443 (797)
T ss_pred HHHHHHHhC
Confidence 999999874
No 167
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.68 E-value=3.3 Score=32.68 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEE-ee--cCCchhhhcCCCccEEEecCChhhHHHHHHc--
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFI-QK--WYPQTDILAHPNLRLFITHGGISSLMEASSL-- 123 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~-~~--~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~-- 123 (174)
..+...++.+.|.+.+..+.+.......... ..+.+... .+ ..+...+. ..+|++|+=||-||+..+...
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~Dlvi~iGGDGTlL~aar~~~ 89 (305)
T PRK02649 15 AVRTAEELQDKLEAAGWEVVRASSSGGILGY---ANPDQPVCHTGIDQLVPPGFD--SSMKFAIVLGGDGTVLSAARQLA 89 (305)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhcCc---cccccccccccccccChhhcc--cCcCEEEEEeCcHHHHHHHHHhc
Confidence 3566788888888888877664321111000 00000000 00 01112222 469999999999999999764
Q ss_pred --CCCeEeccc
Q psy16939 124 --GVPVLGVPF 132 (174)
Q Consensus 124 --g~P~i~vP~ 132 (174)
++|++.+-.
T Consensus 90 ~~~iPilGIN~ 100 (305)
T PRK02649 90 PCGIPLLTINT 100 (305)
T ss_pred CCCCcEEEEeC
Confidence 789888853
No 168
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=83.01 E-value=1.2 Score=35.79 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCccccc-cCCCCCEEEeec-CCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 53 KLGFLEVFKQLKLPIFWKIDITNDPVLNA-KTLPDNVFIQKW-YPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~nv~~~~~-~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
.+++. .+...++.+++...+........ .....++...+. .+..++| ..+|+.||--.. .+.|.+..++|++..
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll--~~aDiLITDySS-i~fD~~~l~KPiify 294 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLL--AAADILITDYSS-IIFDFLLLNKPIIFY 294 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHH--HT-SEEEESS-T-HHHHHGGGT--EEEE
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHH--HhcCEEEEechh-HHHHHHHhCCCEEEE
Confidence 44444 55555566666544311111000 134567766554 4577888 679999999964 899999999999988
Q ss_pred cccchHHHHHH----HHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 131 PFFGDQYRNMV----LLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 131 P~~~dQ~~na~----~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
....|+....+ -.+....|..+. +.++|.++|.+++.
T Consensus 295 ~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~ 335 (369)
T PF04464_consen 295 QPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIE 335 (369)
T ss_dssp -TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHH
T ss_pred eccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhh
Confidence 76555442210 011223333332 67888888887664
No 169
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=82.67 E-value=6 Score=31.10 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCCccEEEecCChhhHHHHHHcCCCeEecc
Q psy16939 102 HPNLRLFITHGGISSLMEASSLGVPVLGVP 131 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~~g~P~i~vP 131 (174)
.-+-|++|+.++..+..-|-..|+|.+.+-
T Consensus 91 ~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 91 EYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred hcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 356799999999999999999999999763
No 170
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=82.57 E-value=4.5 Score=32.54 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
+++.+.+....+++++|+-++... ....++++.+.|+..+..+.+..+-..-+.. . .-..-.+.+
T Consensus 15 ~~l~~~~~~~g~r~lvVt~~~~~~----~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~---------~--~v~~~~~~~ 79 (357)
T cd08181 15 EKHGEELAALGKRALIVTGKSSAK----KNGSLDDVTKALEELGIEYEIFDEVEENPSL---------E--TIMEAVEIA 79 (357)
T ss_pred HHHHHHHHHcCCEEEEEeCCchHh----hcCcHHHHHHHHHHcCCeEEEeCCCCCCcCH---------H--HHHHHHHHH
Confidence 345555554444555555544422 1234677888888777765543221111100 0 000011122
Q ss_pred cCCCccEEEecCChhhHHHHHH----------------------cCCCeEecccc
Q psy16939 101 AHPNLRLFITHGGISSLMEASS----------------------LGVPVLGVPFF 133 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~eal~----------------------~g~P~i~vP~~ 133 (174)
...++|++|.=||. |++++.. .++|++.||..
T Consensus 80 ~~~~~D~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 80 KKFNADFVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 22578999999985 5555432 26899999973
No 171
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=80.77 E-value=6 Score=31.37 Aligned_cols=79 Identities=19% Similarity=0.099 Sum_probs=55.2
Q ss_pred CCEEEee-cCCch---hhhcCCCccEEEecC----ChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCC
Q psy16939 86 DNVFIQK-WYPQT---DILAHPNLRLFITHG----GISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTL 157 (174)
Q Consensus 86 ~nv~~~~-~~p~~---~~l~~~~~~~~I~hg----G~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~ 157 (174)
+++.+.. ++|.. .+| .+||+.|-.- |.||++-.+..|+|+++--. -+.+ ..+.+.|+-+..+.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL--~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fw-qdl~e~gv~Vlf~~d~L 279 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALL--RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFW-QDLTEQGLPVLFTGDDL 279 (322)
T ss_pred ccEEehhhhCCHHHHHHHH--HhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchH-HHHHhCCCeEEecCCcc
Confidence 5666554 56654 456 7799887654 79999999999999998732 1222 23566688887777788
Q ss_pred CHHHHHHHHHHhh
Q psy16939 158 TKQSFLKNAQTML 170 (174)
Q Consensus 158 ~~~~l~~al~~ll 170 (174)
+...+.++=+++.
T Consensus 280 ~~~~v~e~~rql~ 292 (322)
T PRK02797 280 DEDIVREAQRQLA 292 (322)
T ss_pred cHHHHHHHHHHHH
Confidence 8888877755543
No 172
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.14 E-value=26 Score=27.37 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-cccccCCCCCEEEeecCC------------------
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-VLNAKTLPDNVFIQKWYP------------------ 95 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~nv~~~~~~p------------------ 95 (174)
|+++.|..+. .......+++.|.+.++.+.+.+...... .... ...-.+...++..
T Consensus 2 ~~~~~~~~gG----~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 2 ILIAGGGTGG----HIFPALALAEELRERGAEVLFLGTKRGLEARLVP-KAGIPLHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred EEEEecCchh----hhhHHHHHHHHHHhCCCEEEEEECCCcchhhccc-ccCCceEEEEecCcCCCChHHHHHHHHHHHH
Confidence 6777777654 34567789999999999887766543221 1000 1111233332211
Q ss_pred ----chhhhcCCCccEEEecCChhh---HHHHHHcCCCeEecc
Q psy16939 96 ----QTDILAHPNLRLFITHGGISS---LMEASSLGVPVLGVP 131 (174)
Q Consensus 96 ----~~~~l~~~~~~~~I~hgG~~t---~~eal~~g~P~i~vP 131 (174)
...++...+-|++++|++..+ ..-+...|+|.+...
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~ 119 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE 119 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEc
Confidence 112232346899999986543 334566789998753
No 173
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.90 E-value=7.2 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.5
Q ss_pred CccEEEecCChhhHHHHHHc-----CCCeEeccc
Q psy16939 104 NLRLFITHGGISSLMEASSL-----GVPVLGVPF 132 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~-----g~P~i~vP~ 132 (174)
.+|++|+=||-||+..++.. .+|++.+..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcccCCCeEEeEec
Confidence 47999999999999999874 567666654
No 174
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.61 E-value=12 Score=32.26 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=44.4
Q ss_pred chhhhcCCCccEEEec----CChhhHHHHHHcCCCeEeccccc-hHHHHHHHHHHc-CceeEecCCC-----CCHHHHHH
Q psy16939 96 QTDILAHPNLRLFITH----GGISSLMEASSLGVPVLGVPFFG-DQYRNMVLLRHR-GYALIEPIQT-----LTKQSFLK 164 (174)
Q Consensus 96 ~~~~l~~~~~~~~I~h----gG~~t~~eal~~g~P~i~vP~~~-dQ~~na~~l~~~-G~g~~l~~~~-----~~~~~l~~ 164 (174)
..+++ ..||+++.- |=.-+..||+++|+|+|.-...+ ..... ..+... ..|+.+...+ .+.++|.+
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 44555 789999983 33568999999999999986532 11111 112111 2566654221 24566777
Q ss_pred HHHHhhcC
Q psy16939 165 NAQTMLND 172 (174)
Q Consensus 165 al~~ll~~ 172 (174)
++.++++.
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 77776643
No 175
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=77.14 E-value=7.5 Score=31.58 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhc
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILA 101 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~ 101 (174)
++.+.+....+++++|+-++... .....+.+.+.|+..+..+.+..+-..-+.. ++ +. .-...+.
T Consensus 19 ~l~~~~~~~~~r~livt~~~~~~----~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~--v~---~~~~~~~ 83 (382)
T cd08187 19 ELGKELKKYGKKVLLVYGGGSIK----KNGLYDRVIASLKEAGIEVVELGGVEPNPRL------ET--VR---EGIELCK 83 (382)
T ss_pred HHHHHHHHhCCEEEEEeCCcHHH----hcCcHHHHHHHHHHcCCeEEEECCccCCCCH------HH--HH---HHHHHHH
Confidence 33344433334566665544422 1234677888888777766554322111100 00 00 0011122
Q ss_pred CCCccEEEecCChhhHHHHH---H--------------------cCCCeEeccc
Q psy16939 102 HPNLRLFITHGGISSLMEAS---S--------------------LGVPVLGVPF 132 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal---~--------------------~g~P~i~vP~ 132 (174)
...+|++|.=||. |++++. + .++|+|.||.
T Consensus 84 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 84 EEKVDFILAVGGG-SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HcCCCEEEEeCCh-HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 2578999988884 444432 1 2689999997
No 176
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=77.06 E-value=13 Score=29.38 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=49.8
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+++.... +++++|+ |... .....+.+.+.|++. ..+.+......-+.+. .. ..-.+.
T Consensus 12 ~~l~~~~~~~g~~~~liv~-~~~~-----~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~--~v---------~~~~~~ 73 (332)
T cd07766 12 EKIGEEIKRGGFDRALVVS-DEGV-----VKGVGEKVADSLKKL-IAVHIFDGVGPNPTFE--EV---------KEAVER 73 (332)
T ss_pred HHHHHHHHhcCCCeEEEEe-CCch-----hhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHH--HH---------HHHHHH
Confidence 34555565544 5566666 4432 236677888888775 5544433211101000 00 001112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHc--CCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSL--GVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~--g~P~i~vP~~ 133 (174)
+...++|++|.=||. ++++. ..+ |+|++.||..
T Consensus 74 ~~~~~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 74 ARAAEVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHhcCcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 222579999998884 44443 223 9999999973
No 177
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=76.46 E-value=36 Score=28.82 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC---c-EEEEecCCC---Cc----------c----cccc----CCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL---P-IFWKIDITN---DP----------V----LNAK----TLPD 86 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~---~-~i~~~~~~~---~~----------~----~~~~----~~~~ 86 (174)
...|+++.|-..... .-...+.++-..|++.|. + ++++++... .+ + +..+ ...+
T Consensus 284 ~~kiIl~VDRLDy~K-GI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTK-GILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP 362 (487)
T ss_pred CceEEEEeccccccc-CHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc
Confidence 467888998876532 224455666666666664 2 333333211 00 0 0000 1123
Q ss_pred CEEEeecCCchhhhcC-CCccEEEecC---ChhhHH-HHHHcCCC---eEeccccchHHHHHHHHHHcCceeEecCCCCC
Q psy16939 87 NVFIQKWYPQTDILAH-PNLRLFITHG---GISSLM-EASSLGVP---VLGVPFFGDQYRNMVLLRHRGYALIEPIQTLT 158 (174)
Q Consensus 87 nv~~~~~~p~~~~l~~-~~~~~~I~hg---G~~t~~-eal~~g~P---~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~ 158 (174)
-+.+...+|..++.++ ..||+++.-. |+|.+. |.++++.. ++++..++ -| .+...-++.+++ .+
T Consensus 363 v~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa----Ga--a~~l~~AllVNP--~d 434 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA----GA--AVELKGALLTNP--YD 434 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccc----cc--hhhcCCCEEECC--CC
Confidence 3566677887775543 7899998754 887554 99988772 34443322 11 144445777765 47
Q ss_pred HHHHHHHHHHhhcCC
Q psy16939 159 KQSFLKNAQTMLNDP 173 (174)
Q Consensus 159 ~~~l~~al~~ll~~~ 173 (174)
.+++.++|.+.|+.+
T Consensus 435 ~~~~A~ai~~AL~m~ 449 (487)
T TIGR02398 435 PVRMDETIYVALAMP 449 (487)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999998765
No 178
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=76.41 E-value=9.2 Score=31.03 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+.+...+ +++++|+-.+. . .....+.+.+.|++.+..+.+..+-..-+ . +..-..-...
T Consensus 18 ~~l~~~l~~~g~~r~lvvt~~~~-~----~~g~~~~v~~~L~~~~i~~~~~~~v~~~p--------~---~~~v~~~~~~ 81 (379)
T TIGR02638 18 EDIVDEVKRRGFKKALVVTDKDL-I----KFGVADKVTDLLDEAGIAYELFDEVKPNP--------T---ITVVKAGVAA 81 (379)
T ss_pred HHHHHHHHhcCCCEEEEEcCcch-h----hccchHHHHHHHHHCCCeEEEECCCCCCc--------C---HHHHHHHHHH
Confidence 34555555545 45555554333 2 23357778888887777665532211111 0 0000011122
Q ss_pred hcCCCccEEEecCChhhHHHHH-------------------------HcCCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEAS-------------------------SLGVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal-------------------------~~g~P~i~vP~~ 133 (174)
+...++|++|-=||. +++++. ..++|++.||..
T Consensus 82 ~~~~~~D~IiaiGGG-SviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 82 FKASGADYLIAIGGG-SPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHhcCCCEEEEeCCh-HHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 323578999988884 555443 135899999973
No 179
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.35 E-value=8.3 Score=29.94 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=35.0
Q ss_pred CccEEEecCChhhHHHHHH-cCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 104 NLRLFITHGGISSLMEASS-LGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~-~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
.+|++|+=||-||+..+.. ...|++.+-.. ..|-. .+.+.+++.+++++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFL---TEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccC---cccCHHHHHHHHHHHHcC
Confidence 5899999999999999887 45687777431 01111 134556666666666654
No 180
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=76.26 E-value=24 Score=31.38 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=48.6
Q ss_pred EEeecCCchhhhcC-CCccEEEecC---C-hhhHHHHHHcCCC---eEeccccchHHHHHHHHHHcCceeEecCCCCCHH
Q psy16939 89 FIQKWYPQTDILAH-PNLRLFITHG---G-ISSLMEASSLGVP---VLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQ 160 (174)
Q Consensus 89 ~~~~~~p~~~~l~~-~~~~~~I~hg---G-~~t~~eal~~g~P---~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~ 160 (174)
++.+++++.++.++ ..||+++... | ..++.|++++|+| .+++..+.-- +. +..-|+.+++. +.+
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~---~~---~l~~~llv~P~--d~~ 416 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA---AA---ELAEALLVNPN--DIE 416 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch---hH---HhCcCeEECCC--CHH
Confidence 45567787764433 8899999753 3 5578899999875 3444332110 11 11126777654 688
Q ss_pred HHHHHHHHhhcCC
Q psy16939 161 SFLKNAQTMLNDP 173 (174)
Q Consensus 161 ~l~~al~~ll~~~ 173 (174)
++.+++.++++++
T Consensus 417 ~la~ai~~~l~~~ 429 (726)
T PRK14501 417 GIAAAIKRALEMP 429 (726)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988753
No 181
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.44 E-value=39 Score=26.29 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=24.5
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~vP~ 132 (174)
..+|++|+=||-||+..+.. .++|++.+-.
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 46899999999999998754 3689888853
No 182
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=74.42 E-value=12 Score=24.21 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.4
Q ss_pred CccccCCccccCChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCc
Q psy16939 7 RAVKLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLP 66 (174)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~ 66 (174)
+++.+.|--+.+...++-+++....++++++|=.|... .+.+.+.|...|..
T Consensus 6 dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s--------~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 6 DGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRS--------REEYAKKLKKLGIP 57 (101)
T ss_dssp TTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS---------HHHHHHHHHHTTTT
T ss_pred ccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCC--------HHHHHHHHHhcCcC
Confidence 66777777777777788888888878899999888753 33444444555553
No 183
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=74.36 E-value=42 Score=27.64 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCc--------CCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh---
Q psy16939 32 GGFVYMSFGSVV--------DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL--- 100 (174)
Q Consensus 32 ~~~v~vs~Gs~~--------~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l--- 100 (174)
.+.|+|+.|... .++.-+..+-..+.+++...|.+|+...+..... .+.++...+.-...++.
T Consensus 188 gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~------~~~~~~~~dv~~~~~~~~~v 261 (399)
T PRK05579 188 GKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP------TPAGVKRIDVESAQEMLDAV 261 (399)
T ss_pred CCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc------CCCCcEEEccCCHHHHHHHH
Confidence 578999999210 0000012246778889999999988877654322 23334444433322211
Q ss_pred -c-CCCccEEEecCChhh
Q psy16939 101 -A-HPNLRLFITHGGISS 116 (174)
Q Consensus 101 -~-~~~~~~~I~hgG~~t 116 (174)
. .+..|++|+.+|..-
T Consensus 262 ~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 262 LAALPQADIFIMAAAVAD 279 (399)
T ss_pred HHhcCCCCEEEEcccccc
Confidence 1 256899999998643
No 184
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.97 E-value=2.9 Score=33.12 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=49.4
Q ss_pred EEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHH--HH-cCceeEecCCCCCHHHHHHH
Q psy16939 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL--RH-RGYALIEPIQTLTKQSFLKN 165 (174)
Q Consensus 89 ~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l--~~-~G~g~~l~~~~~~~~~l~~a 165 (174)
.+..+-.+.++|.+ +|++|--+|. .+-.++=.|||+|.+|-.+-|+.-.... .+ .|+.+.+-..+ ...-..+
T Consensus 298 l~lsqqsfadiLH~--adaalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~--aq~a~~~ 372 (412)
T COG4370 298 LWLSQQSFADILHA--ADAALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE--AQAAAQA 372 (412)
T ss_pred EEEeHHHHHHHHHH--HHHHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc--hhhHHHH
Confidence 34445566777744 7777777763 3445677899999999988887644433 33 58888865432 2222223
Q ss_pred HHHhhcCC
Q psy16939 166 AQTMLNDP 173 (174)
Q Consensus 166 l~~ll~~~ 173 (174)
.++++.|+
T Consensus 373 ~q~ll~dp 380 (412)
T COG4370 373 VQELLGDP 380 (412)
T ss_pred HHHHhcCh
Confidence 33366664
No 185
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.72 E-value=8.2 Score=30.03 Aligned_cols=71 Identities=11% Similarity=0.244 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHH---cC
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS---LG 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~---~g 124 (174)
..+...++.+.|++.+..+.+...... .. .... ....... ...+|++|+-||-||+.+++. .+
T Consensus 14 ~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~-----~~~~-------~~~~~~~-~~~~d~vi~iGGDGTlL~a~~~~~~~ 80 (277)
T PRK03708 14 ALKLAYRVYDFLKVSGYEVVVDSETYEHLP-----EFSE-------EDVLPLE-EMDVDFIIAIGGDGTILRIEHKTKKD 80 (277)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhcC-----cccc-------ccccccc-ccCCCEEEEEeCcHHHHHHHHhcCCC
Confidence 456788888888888888776421111 11 0000 0000111 136899999999999999874 35
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|++.+|.
T Consensus 81 ~pi~gIn~ 88 (277)
T PRK03708 81 IPILGINM 88 (277)
T ss_pred CeEEEEeC
Confidence 68888875
No 186
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=73.70 E-value=13 Score=30.46 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=39.7
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+.+...+ +.+++++-++. . ....++++.+.|++.+..+.+..+-..-+.. + .+ ..-...
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~-~----~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~------~--~v---~~~~~~ 101 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFL-H----QAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI------T--DV---CAAVAQ 101 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcch-h----hCccHHHHHHHHHHcCCeEEEECCCCCCcCH------H--HH---HHHHHH
Confidence 34555555544 34444443333 2 2345777888888777665443211111100 0 00 001122
Q ss_pred hcCCCccEEEecCChhhHHH
Q psy16939 100 LAHPNLRLFITHGGISSLME 119 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~e 119 (174)
....++|.+|.=||.. +++
T Consensus 102 ~r~~~~D~IiavGGGS-~iD 120 (395)
T PRK15454 102 LRESGCDGVIAFGGGS-VLD 120 (395)
T ss_pred HHhcCcCEEEEeCChH-HHH
Confidence 2236799999999854 444
No 187
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=72.67 E-value=26 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=25.1
Q ss_pred hhcCCCccEEEecCChhh------HHHHHHcCCCeEec
Q psy16939 99 ILAHPNLRLFITHGGISS------LMEASSLGVPVLGV 130 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t------~~eal~~g~P~i~v 130 (174)
++..-.+|++||.-..++ +..|...|+|+|.|
T Consensus 191 ll~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 191 LLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 444468999999865555 66788999999999
No 188
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=72.59 E-value=14 Score=29.85 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=51.3
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+.+.... +++++|+-++.. .....+.+.+.|+..+..+.+..+-..-+ . ...-..-...
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~-----~~g~~~~v~~~L~~~gi~~~~~~~v~~~p--------~---~~~v~~~~~~ 75 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMV-----KLGLVDKLTDSLKKEGIESAIFDDVVSEP--------T---DESVEEGVKL 75 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchh-----hcchHHHHHHHHHHCCCeEEEECCCCCCc--------C---HHHHHHHHHH
Confidence 34555555444 566666643332 23357788888888777655432211111 0 0000001122
Q ss_pred hcCCCccEEEecCChhhHHHHH---H--------------------cCCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEAS---S--------------------LGVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal---~--------------------~g~P~i~vP~~ 133 (174)
+....+|.+|-=||. |++++. + .++|++.||..
T Consensus 76 ~~~~~~D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 76 AKEGGCDVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 222578999988884 555532 2 36899999974
No 189
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=72.56 E-value=15 Score=29.87 Aligned_cols=95 Identities=12% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCC-chh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYP-QTD 98 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ 98 (174)
+++.+++...+ +++++|+ |.... .....+++.+.|++.+..+.+..+-..-+ . + +-+. -..
T Consensus 19 ~~l~~~~~~~g~~~~lvvt-d~~~~----~~g~~~~v~~~L~~~g~~~~~~~~v~~~p--------~-~---~~v~~~~~ 81 (382)
T PRK10624 19 GALTDEVKRRGFKKALIVT-DKTLV----KCGVVAKVTDVLDAAGLAYEIYDGVKPNP--------T-I---EVVKEGVE 81 (382)
T ss_pred HHHHHHHHhcCCCEEEEEe-Ccchh----hCcchHHHHHHHHHCCCeEEEeCCCCCCc--------C-H---HHHHHHHH
Confidence 34556666555 4455554 44322 23467788888888777655432211111 0 0 0011 112
Q ss_pred hhcCCCccEEEecCChhhHHHHHH-------------------------cCCCeEecccc
Q psy16939 99 ILAHPNLRLFITHGGISSLMEASS-------------------------LGVPVLGVPFF 133 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t~~eal~-------------------------~g~P~i~vP~~ 133 (174)
.+....+|++|-=||. |++++.. .++|.+.||..
T Consensus 82 ~~~~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 82 VFKASGADYLIAIGGG-SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HHHhcCCCEEEEeCCh-HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 2222578999988884 5555431 25899999974
No 190
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=72.29 E-value=16 Score=29.62 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=50.0
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+++...+ +++++|+ |.... .....+++.+.|++.+..+.+..+-..-+ .--.+. .-...
T Consensus 15 ~~l~~~l~~~~~~~~livt-~~~~~----~~~~~~~v~~~L~~~~~~~~~~~~v~~~p--------~~~~v~---~~~~~ 78 (376)
T cd08193 15 ARLGELLAALGAKRVLVVT-DPGIL----KAGLIDPLLASLEAAGIEVTVFDDVEADP--------PEAVVE---AAVEA 78 (376)
T ss_pred HHHHHHHHHcCCCeEEEEc-Ccchh----hCccHHHHHHHHHHcCCeEEEECCCCCCc--------CHHHHH---HHHHH
Confidence 45666666544 4555555 44322 22356778888887776654432211111 000000 01111
Q ss_pred hcCCCccEEEecCChhhHHHHH---H--------------------cCCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEAS---S--------------------LGVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal---~--------------------~g~P~i~vP~~ 133 (174)
+...++|++|.=||. |++++. + .++|++.||..
T Consensus 79 ~~~~~~D~IIaiGGG-s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 79 ARAAGADGVIGFGGG-SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred HHhcCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 222578999999985 444432 1 27899999974
No 191
>PRK10586 putative oxidoreductase; Provisional
Probab=71.14 E-value=27 Score=28.29 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=49.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+++...+ +++++|+.+... ......+.+.|+..+..+++..+....+.+.+ ....
T Consensus 23 ~~l~~~~~~~g~~~~lvv~g~~~~------~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~--------------l~~~ 82 (362)
T PRK10586 23 DHLHDFFTDEQLSRAVWIYGERAI------AAAQPYLPPAFELPGAKHILFRGHCSESDVAQ--------------LAAA 82 (362)
T ss_pred HHHHHHHHhcCCCeEEEEEChHHH------HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHH--------------HHHH
Confidence 45666776655 556666554432 22234556667777766655444333221100 0011
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHcCCCeEeccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPF 132 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~ 132 (174)
. ...+|++|.=||.. ++++ ...++|++.||.
T Consensus 83 ~-~~~~d~iiavGGGs-~iD~aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 83 S-GDDRQVVIGVGGGA-LLDTAKALARRLGLPFVAIPT 118 (362)
T ss_pred h-ccCCCEEEEecCcH-HHHHHHHHHhhcCCCEEEEeC
Confidence 1 14589999998854 4443 234899999996
No 192
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=70.99 E-value=31 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=22.0
Q ss_pred CCccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|. +.+.+|...++|+|++.
T Consensus 58 ~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 58 GKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 346677888663 45678888999999995
No 193
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=69.94 E-value=50 Score=25.73 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=49.5
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-cccccCCCCCEEEeecCC-----------------
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-VLNAKTLPDNVFIQKWYP----------------- 95 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~nv~~~~~~p----------------- 95 (174)
.|+++.|+... .......+++.|.+.++.+.+.++..... .+.. ...-.++..+..+
T Consensus 2 ~i~~~~g~~~g----~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~-~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGG----HIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP-KAGIEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHH----HHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc-cCCCceEEEeccCcCCCChHHHHHHHHHHH
Confidence 36667766643 22344588999999898877666532211 1111 1112222222211
Q ss_pred -----chhhhcCCCccEEEecCChhhHH---HHHHcCCCeEe
Q psy16939 96 -----QTDILAHPNLRLFITHGGISSLM---EASSLGVPVLG 129 (174)
Q Consensus 96 -----~~~~l~~~~~~~~I~hgG~~t~~---eal~~g~P~i~ 129 (174)
...++...+.|++++|++...+. -+...|+|.+.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 11223335689999998865443 34456889875
No 194
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=69.92 E-value=30 Score=29.00 Aligned_cols=87 Identities=14% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCEEEeecC----Cchhh---------hcCCCccEEEecCCh--------------hhHHHHHHcCCCeEec-----cc
Q psy16939 85 PDNVFIQKWY----PQTDI---------LAHPNLRLFITHGGI--------------SSLMEASSLGVPVLGV-----PF 132 (174)
Q Consensus 85 ~~nv~~~~~~----p~~~~---------l~~~~~~~~I~hgG~--------------~t~~eal~~g~P~i~v-----P~ 132 (174)
.++..-.+|. |.... -.|+...++||--|. .++.|.-..|+|.+++ |.
T Consensus 114 ~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~ 193 (492)
T PF09547_consen 114 GPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPY 193 (492)
T ss_pred CceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 4456666774 44332 237889999999884 4678888999999998 55
Q ss_pred cchHHHHHHHHH-HcCceeE-ecCCCCCHHHHHHHHHHhhc
Q psy16939 133 FGDQYRNMVLLR-HRGYALI-EPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 133 ~~dQ~~na~~l~-~~G~g~~-l~~~~~~~~~l~~al~~ll~ 171 (174)
..+-..-+..++ +.++-+. ++-.+++.+++...++++|-
T Consensus 194 s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 194 SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 556566666665 4688876 67778999999999999884
No 195
>KOG0069|consensus
Probab=68.44 E-value=36 Score=27.34 Aligned_cols=99 Identities=8% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC-ccccccCCCCCEEEeecCCchhhhcCCCccEEEe
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND-PVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFIT 110 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~ 110 (174)
+.+.++.+|+++ +.+++.|...+ ..|..+..... ++... . +...+.+..+++ .++|++|.
T Consensus 163 K~vgilG~G~IG----------~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~---~---~~~~~~d~~~~~--~~sD~ivv 223 (336)
T KOG0069|consen 163 KTVGILGLGRIG----------KAIAKRLKPFG-CVILYHSRTQLPPEEAY---E---YYAEFVDIEELL--ANSDVIVV 223 (336)
T ss_pred CEEEEecCcHHH----------HHHHHhhhhcc-ceeeeecccCCchhhHH---H---hcccccCHHHHH--hhCCEEEE
Confidence 678888999884 34555665566 44444443222 21100 0 111166777777 78999998
Q ss_pred cCChhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCceeEe-cC---CCCCHHHHHHHHH
Q psy16939 111 HGGISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYALIE-PI---QTLTKQSFLKNAQ 167 (174)
Q Consensus 111 hgG~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g~~l-~~---~~~~~~~l~~al~ 167 (174)
|+ |... ....|...+++.+-|.++ .. .-.+.+++.++++
T Consensus 224 ~~------------------pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 224 NC------------------PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred ec------------------CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 87 4433 456688888887777654 21 1245666777665
No 196
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=68.03 E-value=3.4 Score=29.66 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=23.1
Q ss_pred cCCCccEEEecCChhhHHHHHHcCCCeEeccccc
Q psy16939 101 AHPNLRLFITHGGISSLMEASSLGVPVLGVPFFG 134 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~ 134 (174)
....+|++|++||......... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4488999999999888888776 99999998643
No 197
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=68.02 E-value=16 Score=31.03 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.8
Q ss_pred CCccEEEecCChhhHHHHHHc----CCCeEecc
Q psy16939 103 PNLRLFITHGGISSLMEASSL----GVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~----g~P~i~vP 131 (174)
..+|++|+=||-||+..+... ++|++.|.
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN 293 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFS 293 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 469999999999999999763 56877764
No 198
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=67.63 E-value=28 Score=23.71 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCc-c-ccccCCCCCEEEeecC-CchhhhcCCCcc-EEEecCChhhHHHHHHc------
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDP-V-LNAKTLPDNVFIQKWY-PQTDILAHPNLR-LFITHGGISSLMEASSL------ 123 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~-~-~~~~~~~~nv~~~~~~-p~~~~l~~~~~~-~~I~hgG~~t~~eal~~------ 123 (174)
+++.++....+-+++=.......+ + ... ..-......+.+ .....|. ..+| .++.-||.||+-|....
T Consensus 2 ~a~~~ga~~~gG~viGi~p~~~~~~~~~~~-~~~~~~~~~~~~~~Rk~~m~-~~sda~I~lPGG~GTl~El~~~~~~~~l 79 (133)
T PF03641_consen 2 GAVAKGAKEAGGRVIGIIPEFLFPFEEPPN-PYVTELIIVDDMFERKEIMI-ESSDAFIALPGGIGTLDELFEALTLMQL 79 (133)
T ss_dssp HHHHHHHHHTTTTEEEEEETTGTTTTTTCC-TTSSEEEEESSHHHHHHHHH-HHESEEEEES-SHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCeEEEEecCccccccccCC-cccCceeEeCChHHHHHHHH-HhCCEEEEEecCCchHHHHHHHHHHHhh
Confidence 455666666666665544432222 1 100 111233344433 3334443 3455 45567889999887432
Q ss_pred ---CC-CeEeccc--cchHHH-HHHHHHHcCc
Q psy16939 124 ---GV-PVLGVPF--FGDQYR-NMVLLRHRGY 148 (174)
Q Consensus 124 ---g~-P~i~vP~--~~dQ~~-na~~l~~~G~ 148 (174)
.+ |++++-. ++|... .-+.+.+.|.
T Consensus 80 ~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 80 GRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp TSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred ccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 44 9999842 333333 2234555553
No 199
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.41 E-value=15 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=24.7
Q ss_pred CccEEEecCChhhHHHHHHc----CCCeEeccc
Q psy16939 104 NLRLFITHGGISSLMEASSL----GVPVLGVPF 132 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~----g~P~i~vP~ 132 (174)
.+|++|+-||-||+..+... ++|++.|-.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~ 380 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINM 380 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 58999999999999998763 789888854
No 200
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.26 E-value=42 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|.| .+.+|...++|+|++.
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567778887744 5778999999999995
No 201
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=66.48 E-value=32 Score=27.36 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=49.4
Q ss_pred HHHHHHhcCC--CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 22 DLQQRADAAK--GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 22 ~~~~~~~~~~--~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
++.+++.... +++++|+-.+.. ....+++.+.|++.+..+.+........ |. ..... .-...
T Consensus 13 ~l~~~~~~~~~~~kvlivtd~~~~------~~~~~~i~~~L~~~~~~~~i~~~~~~~~-------p~-~~~v~--~~~~~ 76 (332)
T cd08549 13 DIGPIINKIGVNSKIMIVCGNNTY------KVAGKEIIERLESNNFTKEVLERDSLLI-------PD-EYELG--EVLIK 76 (332)
T ss_pred HHHHHHHHcCCCCcEEEEECCcHH------HHHHHHHHHHHHHcCCeEEEEecCCCCC-------CC-HHHHH--HHHHH
Confidence 4444554332 456666654442 2234777888877776554433211110 00 00000 00112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHcCCCeEeccccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPFFG 134 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~~~ 134 (174)
+. .++|++|.=||. ++.++ ...|+|.+.||...
T Consensus 77 ~~-~~~d~IIaiGGG-sv~D~aK~iA~~~gip~I~VPTT~ 114 (332)
T cd08549 77 LD-KDTEFLLGIGSG-TIIDLVKFVSFKVGKPFISVPTAP 114 (332)
T ss_pred hh-cCCCEEEEECCc-HHHHHHHHHHHHcCCCEEEeCCCc
Confidence 22 279999999984 44443 44599999999753
No 202
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=66.41 E-value=43 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=20.0
Q ss_pred CccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 104 NLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 104 ~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
+..+++++.|- +.+.+|...++|+|++.
T Consensus 59 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 59 GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 34555666553 45678889999999995
No 203
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=66.14 E-value=29 Score=28.25 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
+++.+++...++++++|+ |.... .....+++.+.|+..+..+.+..+-..-+ ....+. .....+
T Consensus 12 ~~l~~~~~~~g~~~livt-~~~~~----~~~~~~~v~~~L~~~~~~~~~f~~v~~~~--------~~~~v~---~~~~~~ 75 (386)
T cd08191 12 RQLPRLAARLGSRALIVT-DERMA----GTPVFAELVQALAAAGVEVEVFDGVLPDL--------PRSELC---DAASAA 75 (386)
T ss_pred HHHHHHHHHcCCeEEEEE-Ccchh----hcchHHHHHHHHHHcCCeEEEECCCCCCc--------CHHHHH---HHHHHH
Confidence 345555554444566666 44322 23567888888888887765542211111 000000 111222
Q ss_pred cCCCccEEEecCChhhHHHHH---H--c------------------CCCeEecccc
Q psy16939 101 AHPNLRLFITHGGISSLMEAS---S--L------------------GVPVLGVPFF 133 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~eal---~--~------------------g~P~i~vP~~ 133 (174)
...++|++|-=||. |++++. + . ++|++.||..
T Consensus 76 ~~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 76 ARAGPDVIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 22679999998885 444431 1 1 7899999974
No 204
>PRK06270 homoserine dehydrogenase; Provisional
Probab=65.90 E-value=35 Score=27.30 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=38.8
Q ss_pred CchhhhcCCCccEEEe------cCC---hhhHHHHHHcCCCeEe---ccccchHHHHHHHHHHcCceeEe
Q psy16939 95 PQTDILAHPNLRLFIT------HGG---ISSLMEASSLGVPVLG---VPFFGDQYRNMVLLRHRGYALIE 152 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~------hgG---~~t~~eal~~g~P~i~---vP~~~dQ~~na~~l~~~G~g~~l 152 (174)
+..+++..+..|++|- |++ ..-+.+++.+|+++++ -|...+-..-.+..++.|..+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 5566776677898887 433 4566899999999999 47644333344445566776654
No 205
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=65.90 E-value=17 Score=27.74 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=32.9
Q ss_pred CCccEEEecCChhhHHHHHHc-----CCCeEeccccchHHHHHHHHHHcCcee
Q psy16939 103 PNLRLFITHGGISSLMEASSL-----GVPVLGVPFFGDQYRNMVLLRHRGYAL 150 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~-----g~P~i~vP~~~dQ~~na~~l~~~G~g~ 150 (174)
|.-++++.+.|.+|.-++.++ ..++++|-...|-+.-....++.|+-.
T Consensus 112 p~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~Gi~~ 164 (239)
T PRK10834 112 DPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQA 164 (239)
T ss_pred CHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHcCCce
Confidence 778999999999887666543 335777766666555555556677754
No 206
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=65.09 E-value=20 Score=29.09 Aligned_cols=46 Identities=2% Similarity=-0.115 Sum_probs=25.0
Q ss_pred HHHHHHhcC---C-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEe
Q psy16939 22 DLQQRADAA---K-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI 71 (174)
Q Consensus 22 ~~~~~~~~~---~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~ 71 (174)
++.+.+... + +++++|+-.+... ....++++.+.|+..+..+.+..
T Consensus 13 ~l~~~l~~~~~~g~kr~livtd~~~~~----~~g~~~~v~~~L~~~gi~~~~f~ 62 (383)
T cd08186 13 KIGEILKDLKSKGISKVLLVTGKSAYK----KSGAWDKVEPALDEHGIEYVLYN 62 (383)
T ss_pred HHHHHHHHhcccCCCEEEEEcCccHHh----hcChHHHHHHHHHHcCCeEEEeC
Confidence 344444432 3 4555555433321 23346778888887777666543
No 207
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=64.91 E-value=23 Score=28.66 Aligned_cols=96 Identities=9% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+++.... +++++|+-++. . .....+++.+.|+..+..+.+..+-..-+.. ++ +. .-...
T Consensus 17 ~~l~~~l~~~g~~~~lvv~~~~~-~----~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~------~~--v~---~~~~~ 80 (377)
T cd08176 17 KEIGDELKNLGFKKALIVTDKGL-V----KIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI------TN--VK---DGLAV 80 (377)
T ss_pred HHHHHHHHHhCCCeEEEECCchH-h----hcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH------HH--HH---HHHHH
Confidence 34555555544 44555543333 1 1245777888887777665543221111100 00 00 01112
Q ss_pred hcCCCccEEEecCChhhHHHHH---H--------------------cCCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEAS---S--------------------LGVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal---~--------------------~g~P~i~vP~~ 133 (174)
+....+|++|-=||. |++++. + .++|++.||..
T Consensus 81 ~~~~~~D~IIavGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 81 FKKEGCDFIISIGGG-SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred HHhcCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 222568999988885 554432 1 36899999973
No 208
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=64.65 E-value=72 Score=25.54 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred ccccCCc-cccCChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 8 AVKLCSM-CFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 8 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
.+.+.|| -+.+.++.+++..+. ..|++.-||...|- +|.-.+..+.+++.+...+++...+
T Consensus 168 ~V~~~~~~~~~a~~eaveAI~~A---D~IviGPgSl~TSI-lP~Lllp~I~eaLr~~~ap~i~v~n 229 (323)
T COG0391 168 RVRLEGPEKPSAAPEAVEAIKEA---DLIVIGPGSLFTSI-LPILLLPGIAEALRETVAPIVYVCN 229 (323)
T ss_pred EEEEecCCCCCCCHHHHHHHHhC---CEEEEcCCccHhhh-chhhchhHHHHHHHhCCCCEEEecc
Confidence 3444533 333455666665433 58999999988754 6778899999999997777776654
No 209
>PLN02727 NAD kinase
Probab=63.83 E-value=63 Score=29.75 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.2
Q ss_pred CCccEEEecCChhhHHHHHHc----CCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASSL----GVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~----g~P~i~vP~ 132 (174)
..+|++|+=||-||+..+... ++|++.|-.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINl 775 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNL 775 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 569999999999999999664 678888754
No 210
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=63.45 E-value=74 Score=25.30 Aligned_cols=139 Identities=18% Similarity=0.081 Sum_probs=78.3
Q ss_pred cccccCccccCCccccCChHHHHHHHhcCC--CCeEE----------EEcCCC-------cCCCCCCHHHHHHHHHHHhh
Q psy16939 2 VSVLNRAVKLCSMCFIDGLSDLQQRADAAK--GGFVY----------MSFGSV-------VDPTKLSEETKLGFLEVFKQ 62 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~----------vs~Gs~-------~~~~~~~~~~~~~i~~~l~~ 62 (174)
|+.|+..+...|+.-....+-+.+.+.... ..++. +.-+.. .....++...++.+++.+.+
T Consensus 46 L~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~ 125 (310)
T COG1105 46 LKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKA 125 (310)
T ss_pred HHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 455666677777776666666777766543 11121 112211 01112566778888887777
Q ss_pred -CCC-cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccc--------
Q psy16939 63 -LKL-PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPF-------- 132 (174)
Q Consensus 63 -~~~-~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~-------- 132 (174)
+.. .+++..|+ - |+++-..-|..-..++....+.+++.-.|. .+.+++.++ |.++.|.
T Consensus 126 ~l~~~d~VvlsGS-l---------P~g~~~d~y~~li~~~~~~g~~vilD~Sg~-~L~~~L~~~-P~lIKPN~~EL~~~~ 193 (310)
T COG1105 126 LLESDDIVVLSGS-L---------PPGVPPDAYAELIRILRQQGAKVILDTSGE-ALLAALEAK-PWLIKPNREELEALF 193 (310)
T ss_pred hcccCCEEEEeCC-C---------CCCCCHHHHHHHHHHHHhcCCeEEEECChH-HHHHHHccC-CcEEecCHHHHHHHh
Confidence 433 45555542 1 122111122222333332456666666664 667777777 9999996
Q ss_pred ------cchHHHHHHHHHHcCceeEe
Q psy16939 133 ------FGDQYRNMVLLRHRGYALIE 152 (174)
Q Consensus 133 ------~~dQ~~na~~l~~~G~g~~l 152 (174)
..|+...|+.+...|+-.++
T Consensus 194 g~~~~~~~d~i~~a~~l~~~g~~~Vi 219 (310)
T COG1105 194 GRELTTLEDVIKAARELLAEGIENVI 219 (310)
T ss_pred CCCCCChHHHHHHHHHHHHCCCCEEE
Confidence 23788888888888887653
No 211
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=63.33 E-value=72 Score=25.12 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=50.0
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCC-ccccccCCCCCEEEeecCC------------------
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITND-PVLNAKTLPDNVFIQKWYP------------------ 95 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~nv~~~~~~p------------------ 95 (174)
|+++.|+.+. .......+++.|.+.++.+.+.+..... .+..+ ...-.++..+...
T Consensus 4 i~i~~~g~gG----~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (357)
T PRK00726 4 ILLAGGGTGG----HVFPALALAEELKKRGWEVLYLGTARGMEARLVP-KAGIEFHFIPSGGLRRKGSLANLKAPFKLLK 78 (357)
T ss_pred EEEEcCcchH----hhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc-cCCCcEEEEeccCcCCCChHHHHHHHHHHHH
Confidence 5555543332 3446678999999889887776654421 11101 1122333333211
Q ss_pred ----chhhhcCCCccEEEecCChhhHH---HHHHcCCCeEecc
Q psy16939 96 ----QTDILAHPNLRLFITHGGISSLM---EASSLGVPVLGVP 131 (174)
Q Consensus 96 ----~~~~l~~~~~~~~I~hgG~~t~~---eal~~g~P~i~vP 131 (174)
...++...+.|++++|+....+. -+...++|.+...
T Consensus 79 ~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 121 (357)
T PRK00726 79 GVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHE 121 (357)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEc
Confidence 01233334689999998654433 3456789998763
No 212
>PLN02470 acetolactate synthase
Probab=63.24 E-value=28 Score=30.05 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=54.6
Q ss_pred EcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCcccccc-CCCCCEEEeecCC-ch-------hhhcCCCccEE
Q psy16939 38 SFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAK-TLPDNVFIQKWYP-QT-------DILAHPNLRLF 108 (174)
Q Consensus 38 s~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~nv~~~~~~p-~~-------~~l~~~~~~~~ 108 (174)
+|||..... .+....+.+++.|++.+.+.++-..+.....+... ...++++++.-.. +. .-....+..++
T Consensus 2 ~~~~~~~~~-~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~ 80 (585)
T PLN02470 2 TFQSRFAPD-EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVC 80 (585)
T ss_pred CcccCCCCC-ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 456665532 23344678888888888887777766543221110 1122344443221 11 11112567888
Q ss_pred EecCChh------hHHHHHHcCCCeEecc
Q psy16939 109 ITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 109 I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
++|.|-| .+.+|.+.++|+|++.
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 8888854 6788999999999994
No 213
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=62.45 E-value=9.8 Score=29.10 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCccEEEecCChhhHHHHHHc----CCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASSL----GVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~----g~P~i~vP~ 132 (174)
..+|++|+-||-||+..++.. ++|++.+-.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 458999999999999988654 689888853
No 214
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=62.36 E-value=31 Score=27.95 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+.+.... +++++|+-++. . .....+++.+.|...+..+.+..+-..-+. .-.+.. -.+.
T Consensus 17 ~~l~~~l~~~g~~~~livt~~~~-~----~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~--------~~~v~~---~~~~ 80 (377)
T cd08188 17 KLAGRYARRLGAKKVLLVSDPGV-I----KAGWVDRVIESLEEAGLEYVVFSDVSPNPR--------DEEVMA---GAEL 80 (377)
T ss_pred HHHHHHHHHcCCCeEEEEeCcch-h----hCccHHHHHHHHHHcCCeEEEeCCCCCCCC--------HHHHHH---HHHH
Confidence 34555555544 45555554332 2 223467777888777776655332111110 000000 0122
Q ss_pred hcCCCccEEEecCChhhHHHHH---Hc--------------------CCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEAS---SL--------------------GVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~eal---~~--------------------g~P~i~vP~~ 133 (174)
+....+|++|-=||. +++++. +. ++|+|.||..
T Consensus 81 ~~~~~~d~IIaiGGG-sviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 81 YLENGCDVIIAVGGG-SPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred HHhcCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 222579999998885 454443 11 4699999974
No 215
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=62.09 E-value=75 Score=24.89 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=48.8
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
|++......+ +++-+-....... -....+..+.+++++++..+++-+|...... ..... ...+..=..-.-
T Consensus 117 E~er~v~~~gf~g~~l~p~~~~~~---~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----~~~~~-~~~p~~~~~va~ 188 (293)
T COG2159 117 ELERRVRELGFVGVKLHPVAQGFY---PDDPRLYPIYEAAEELGVPVVIHTGAGPGGA----GLEKG-HSDPLYLDDVAR 188 (293)
T ss_pred HHHHHHHhcCceEEEecccccCCC---CCChHHHHHHHHHHHcCCCEEEEeCCCCCCc----ccccC-CCCchHHHHHHH
Confidence 5555665544 3333333333322 2345578999999999999888776543321 11100 011111112223
Q ss_pred cCCCccEEEecCC--hhhHHHH
Q psy16939 101 AHPNLRLFITHGG--ISSLMEA 120 (174)
Q Consensus 101 ~~~~~~~~I~hgG--~~t~~ea 120 (174)
.+|+..+++.|.| ..=..|+
T Consensus 189 ~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 189 KFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred HCCCCcEEEEecCCCCchhHHH
Confidence 3499999999999 4444444
No 216
>KOG0853|consensus
Probab=61.20 E-value=18 Score=30.65 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCCC--cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCe
Q psy16939 50 EETKLGFLEVFKQLKL--PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
.+.++++.+.+++.+. +++|...+....+- . .+..+++..-+-|..+ |=| -++.||+++|+|+
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~-y-rl~adt~~v~~qPa~E------------~FG-iv~IEAMa~glPv 392 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTTRVAK-Y-RLAADTKGVLYQPANE------------HFG-IVPIEAMACGLPV 392 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCchHHH-H-HHHHhcceEEecCCCC------------Ccc-ceeHHHHhcCCCE
Confidence 4567888888887754 67776654331110 0 1111222222222222 223 3889999999999
Q ss_pred EeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 128 LGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 128 i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
+..-..+ =+..++..--|..+++..-....+.+++.++..|+
T Consensus 393 vAt~~GG----P~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 393 VATNNGG----PAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred EEecCCC----ceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 9984311 01122222345555442222235777777776664
No 217
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=60.72 E-value=11 Score=29.10 Aligned_cols=79 Identities=6% Similarity=0.023 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-Ccccccc---CC--CCCEEEeecCCchhhh-----
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAK---TL--PDNVFIQKWYPQTDIL----- 100 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~---~~--~~nv~~~~~~p~~~~l----- 100 (174)
.+.++|+..|.+. -.++++.|++.++.+++..+..+ +.++... .. .-.+...+.....++.
T Consensus 6 ~~~~lITGASsGI--------G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 6 GKTALITGASSGI--------GAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CcEEEEECCCchH--------HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHH
Confidence 5789999888764 67788889999999998887643 2211110 11 1123444433322211
Q ss_pred -cC--CCccEEEecCChhhHH
Q psy16939 101 -AH--PNLRLFITHGGISSLM 118 (174)
Q Consensus 101 -~~--~~~~~~I~hgG~~t~~ 118 (174)
.. ...|+.|..+|.|+.-
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred HHhcCCcccEEEECCCcCCcc
Confidence 11 2699999999987654
No 218
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=60.03 E-value=40 Score=27.75 Aligned_cols=45 Identities=2% Similarity=-0.082 Sum_probs=27.3
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
+++.+++.... +++++|+-.+.. ....++++.+.|+..+..+.+.
T Consensus 12 ~~l~~~l~~~g~~~vlivt~~~~~-----~~g~~~~v~~~L~~~gi~~~~f 57 (414)
T cd08190 12 AEVGMDLKNLGARRVCLVTDPNLA-----QLPPVKVVLDSLEAAGINFEVY 57 (414)
T ss_pred HHHHHHHHHcCCCeEEEEECcchh-----hcchHHHHHHHHHHcCCcEEEe
Confidence 34556666555 566666654432 2345778888888777766553
No 219
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=59.21 E-value=13 Score=26.74 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=18.6
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDI 73 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~ 73 (174)
|++-.|.... .....+.+..++.+. ++++..|.
T Consensus 73 vLlVtG~vT~------km~~~l~~~yeqmPePK~VIA~G~ 106 (173)
T PRK14818 73 FMIVAGTLTY------KMAERARLLYDQMPEPKYVISMGS 106 (173)
T ss_pred EEEEeCcCcc------ccHHHHHHHHHhCCCCCEEEEecc
Confidence 5555566533 334555555555665 67777765
No 220
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=58.93 E-value=37 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|- +.+.+|.+.++|+|++.
T Consensus 62 g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 62 GKVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 456778888774 46789999999999994
No 221
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=57.51 E-value=28 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=32.4
Q ss_pred ChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 19 GLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
-|+++.+.+...++|++++..|... .+..+++.+..+..+.+++....
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~~------~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENLE------DEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcCc------ccHHHHHHHHHHHHCCCEEEcCc
Confidence 5788899998887788887777652 23355555555555778776554
No 222
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=57.51 E-value=13 Score=24.64 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee-------cCCchhhhcC-CCccEEEecCChhhHHHH
Q psy16939 50 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK-------WYPQTDILAH-PNLRLFITHGGISSLMEA 120 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~-------~~p~~~~l~~-~~~~~~I~hgG~~t~~ea 120 (174)
-+...+++.++++.+++++......+...... ...+.++..+ |+....++.. .+..+...|+|+|-+.|.
T Consensus 11 Geia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~-~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 11 GEIAVRIIRALRELGIETVAVNSNPDTVSTHV-DMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSEN 88 (110)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHH-HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTH
T ss_pred CHHHHHHHHHHHHhCCcceeccCchhcccccc-cccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHH
Confidence 34477889999999998777665433211000 2345555555 5555544422 223666788999877776
No 223
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=56.75 E-value=2.9 Score=30.03 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=39.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-++.+|.++ +++++.++..+.+++........... .....+ .+.+..+++ +.+|+++.|
T Consensus 37 ~tvgIiG~G~IG----------~~vA~~l~~fG~~V~~~d~~~~~~~~---~~~~~~---~~~~l~ell--~~aDiv~~~ 98 (178)
T PF02826_consen 37 KTVGIIGYGRIG----------RAVARRLKAFGMRVIGYDRSPKPEEG---ADEFGV---EYVSLDELL--AQADIVSLH 98 (178)
T ss_dssp SEEEEESTSHHH----------HHHHHHHHHTT-EEEEEESSCHHHHH---HHHTTE---EESSHHHHH--HH-SEEEE-
T ss_pred CEEEEEEEcCCc----------CeEeeeeecCCceeEEecccCChhhh---cccccc---eeeehhhhc--chhhhhhhh
Confidence 567777787774 46777778889988776654332210 001122 455778888 779999999
Q ss_pred CCh
Q psy16939 112 GGI 114 (174)
Q Consensus 112 gG~ 114 (174)
.-.
T Consensus 99 ~pl 101 (178)
T PF02826_consen 99 LPL 101 (178)
T ss_dssp SSS
T ss_pred hcc
Confidence 864
No 224
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=56.07 E-value=52 Score=26.48 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+.+...+ +++++|+-.+. . .....+.+.+.|++.+..+.+..+-..-+.. ++ +. .-...
T Consensus 12 ~~l~~~l~~~~~~~~lvv~~~~~-~----~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~------~~--v~---~~~~~ 75 (370)
T cd08551 12 EKLGEEIKNLGGRKALIVTDPGL-V----KTGVLDKVIDSLKEAGIEVVIFDGVEPNPTL------SN--VD---AAVAA 75 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeCcch-h----hCccHHHHHHHHHHcCCeEEEECCCCCCCCH------HH--HH---HHHHH
Confidence 34555555544 45555554333 2 1245777888888777766544322111100 00 00 01112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHc------------------CCCeEecccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSL------------------GVPVLGVPFF 133 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~------------------g~P~i~vP~~ 133 (174)
+....+|++|-=||. ++++. +.. ++|++.||..
T Consensus 76 ~~~~~~d~IiaiGGG-s~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 76 YREEGCDGVIAVGGG-SVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred HHhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 222568999998885 33332 122 7899999973
No 225
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=56.00 E-value=13 Score=27.24 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=19.5
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDI 73 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~ 73 (174)
|++-.|+. .......+.+..++.+. ++++..|.
T Consensus 70 vllVtG~V------t~km~~~l~~~y~qmPePK~VIA~Ga 103 (189)
T PRK14813 70 LMIVAGTV------TMKMAERVVRLYEQMPEPRYVLSMGS 103 (189)
T ss_pred EEEEeccC------chhhHHHHHHHHHhCCCCCEEEEecc
Confidence 55555555 34455666666666655 56776665
No 226
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.77 E-value=15 Score=28.98 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHc----C
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSL----G 124 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~----g 124 (174)
..+.+.++.+.|++.+..+.+........ +.. ... .... ..+|++|+-||-||+.+++.. +
T Consensus 17 ~~~~~~~i~~~L~~~g~~v~v~~~~~~~~-------~~~-----~~~-~~~~--~~~d~vi~~GGDGT~l~~~~~~~~~~ 81 (305)
T PRK02645 17 AKEAAERCAKQLEARGCKVLMGPSGPKDN-------PYP-----VFL-ASAS--ELIDLAIVLGGDGTVLAAARHLAPHD 81 (305)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCchhhc-------ccc-----chh-hccc--cCcCEEEEECCcHHHHHHHHHhccCC
Confidence 35668888888888888766543211110 000 011 1111 458999999999999999764 7
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|++.+..
T Consensus 82 ~pv~gin~ 89 (305)
T PRK02645 82 IPILSVNV 89 (305)
T ss_pred CCEEEEec
Confidence 89988864
No 227
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=55.53 E-value=97 Score=24.10 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=29.8
Q ss_pred CccccCCccccCChHHHHHHHhcCCCCeEEEEcCCCcC
Q psy16939 7 RAVKLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVD 44 (174)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~ 44 (174)
+++.+.|-...+...+.-+.+...++|++|+|-.|...
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s 53 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRS 53 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 66777777777777777778878778999999988854
No 228
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.90 E-value=48 Score=26.48 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec--CCCCccccccCCCCCEEEeecCCchhh
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID--ITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~--~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
++.+.+....+++++|+-++.. ....+.+.+.|+..+..+.+... ++...+ ... .-.+.
T Consensus 13 ~l~~~~~~~~~r~liv~d~~~~------~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~----~v~---------~~~~~ 73 (345)
T cd08171 13 KIPEVCEKYGKKVVVIGGKTAL------AAAKDKIKAALEQSGIEITDFIWYGGESTYE----NVE---------RLKKN 73 (345)
T ss_pred HHHHHHHhcCCEEEEEeCHHHH------HHHHHHHHHHHHHCCCeEEEEEecCCCCCHH----HHH---------HHHHH
Confidence 3444454433455556554432 23477788888777765543321 111100 000 00112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHcCCCeEeccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPF 132 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~ 132 (174)
....++|++|.=||. |++++ ...|+|++.||.
T Consensus 74 ~~~~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 74 PAVQEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPT 110 (345)
T ss_pred HhhcCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecC
Confidence 222579999999985 55553 344899999996
No 229
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=54.86 E-value=13 Score=26.53 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 136 QYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 136 Q~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
....+..=+..|+|+++ |+|++.+++.+.+.+
T Consensus 101 ~~d~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 101 PIDVAEFEKACGVGVVV-----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp G--HHHHHHTTTTT---------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCeEE-----CHHHHHHHHHHHHHH
Confidence 34555555668999998 789999999988753
No 230
>PRK06932 glycerate dehydrogenase; Provisional
Probab=54.78 E-value=75 Score=25.13 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-++.+|.++ +++.+.++..+.+++.. ...... .. ...+.+..++| +.||+++.|
T Consensus 148 ktvgIiG~G~IG----------~~va~~l~~fg~~V~~~-~~~~~~-----~~-----~~~~~~l~ell--~~sDiv~l~ 204 (314)
T PRK06932 148 STLGVFGKGCLG----------TEVGRLAQALGMKVLYA-EHKGAS-----VC-----REGYTPFEEVL--KQADIVTLH 204 (314)
T ss_pred CEEEEECCCHHH----------HHHHHHHhcCCCEEEEE-CCCccc-----cc-----ccccCCHHHHH--HhCCEEEEc
Confidence 567788888874 34566666778887653 221111 11 12356778888 789999999
Q ss_pred CChhh
Q psy16939 112 GGISS 116 (174)
Q Consensus 112 gG~~t 116 (174)
.-.+.
T Consensus 205 ~Plt~ 209 (314)
T PRK06932 205 CPLTE 209 (314)
T ss_pred CCCCh
Confidence 96543
No 231
>PRK13057 putative lipid kinase; Reviewed
Probab=54.76 E-value=15 Score=28.47 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCC--CccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHH----HcC
Q psy16939 51 ETKLGFLEVFKQLKLPIFWKIDITN--DPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEAS----SLG 124 (174)
Q Consensus 51 ~~~~~i~~~l~~~~~~~i~~~~~~~--~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal----~~g 124 (174)
....++.+.|.+.+..+........ ..++ . ..+. ...|.+|.-||-||+.|++ ..+
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~--------------~--~~~~--~~~d~iiv~GGDGTv~~v~~~l~~~~ 74 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPAEDPDDLSEV--------------I--EAYA--DGVDLVIVGGGDGTLNAAAPALVETG 74 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCHHHHHHH--------------H--HHHH--cCCCEEEEECchHHHHHHHHHHhcCC
Confidence 3567888888888877554443211 1110 0 0112 5679999999999999985 246
Q ss_pred CCeEeccc
Q psy16939 125 VPVLGVPF 132 (174)
Q Consensus 125 ~P~i~vP~ 132 (174)
+|+-++|.
T Consensus 75 ~~lgiiP~ 82 (287)
T PRK13057 75 LPLGILPL 82 (287)
T ss_pred CcEEEECC
Confidence 89899995
No 232
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=54.15 E-value=21 Score=25.11 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=46.4
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC-CCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI-TNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
|.|.|-+||.. .....+++...|++.+..+-+..-+ .+.++ . +..+ ..-+....++++|.-
T Consensus 1 p~V~Ii~gs~S-----D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~----~------l~~~---~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 1 PKVAIIMGSTS-----DLPIAEEAAKTLEEFGIPYEVRVASAHRTPE----R------LLEF---VKEYEARGADVIIAV 62 (150)
T ss_dssp -EEEEEESSGG-----GHHHHHHHHHHHHHTT-EEEEEE--TTTSHH----H------HHHH---HHHTTTTTESEEEEE
T ss_pred CeEEEEeCCHH-----HHHHHHHHHHHHHHcCCCEEEEEEeccCCHH----H------HHHH---HHHhccCCCEEEEEE
Confidence 45666667764 5788999999999998755444333 22221 0 0000 111211357899988
Q ss_pred CChhhHHHHH---HcCCCeEeccccchH
Q psy16939 112 GGISSLMEAS---SLGVPVLGVPFFGDQ 136 (174)
Q Consensus 112 gG~~t~~eal---~~g~P~i~vP~~~dQ 136 (174)
+|...-.-.. ..-+|+|.+|....+
T Consensus 63 AG~~a~Lpgvva~~t~~PVIgvP~~~~~ 90 (150)
T PF00731_consen 63 AGMSAALPGVVASLTTLPVIGVPVSSGY 90 (150)
T ss_dssp EESS--HHHHHHHHSSS-EEEEEE-STT
T ss_pred CCCcccchhhheeccCCCEEEeecCccc
Confidence 8864433332 347899999986543
No 233
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=53.50 E-value=1.1e+02 Score=24.25 Aligned_cols=61 Identities=5% Similarity=0.168 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-++.+|.++. ++++.+...+.+++..-. .... . ... ..+.+..++| +.||+++.|
T Consensus 146 ktvGIiG~G~IG~----------~vA~~~~~fgm~V~~~d~-~~~~-----~-~~~---~~~~~l~ell--~~sDvv~lh 203 (311)
T PRK08410 146 KKWGIIGLGTIGK----------RVAKIAQAFGAKVVYYST-SGKN-----K-NEE---YERVSLEELL--KTSDIISIH 203 (311)
T ss_pred CEEEEECCCHHHH----------HHHHHHhhcCCEEEEECC-Cccc-----c-ccC---ceeecHHHHh--hcCCEEEEe
Confidence 6778888888743 455556666888765433 2111 0 111 2345778888 789999999
Q ss_pred CCh
Q psy16939 112 GGI 114 (174)
Q Consensus 112 gG~ 114 (174)
.=.
T Consensus 204 ~Pl 206 (311)
T PRK08410 204 APL 206 (311)
T ss_pred CCC
Confidence 843
No 234
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=53.43 E-value=59 Score=26.24 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE-ecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK-IDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~-~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
+++.+++...++++++|+-++. .....+.+.+.|+..+..+++. ..++... +++ .. -.+.
T Consensus 19 ~~l~~~l~~~g~~~livtd~~~------~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~--------~~v--~~---~~~~ 79 (366)
T PRK09423 19 ARLGEYLKPLGKRALVIADEFV------LGIVGDRVEASLKEAGLTVVFEVFNGECSD--------NEI--DR---LVAI 79 (366)
T ss_pred HHHHHHHHHcCCEEEEEEChhH------HHHHHHHHHHHHHhCCCeEEEEEeCCCCCH--------HHH--HH---HHHH
Confidence 4455555544445666663333 2336788888888777654322 2211100 000 00 1112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHcCCCeEeccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPF 132 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~ 132 (174)
+...++|++|.=||. |++++ ...++|++.||.
T Consensus 80 ~~~~~~d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 80 AEENGCDVVIGIGGG-KTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHhcCCCEEEEecCh-HHHHHHHHHHHHcCCCEEEeCC
Confidence 222468999999995 45443 344899999997
No 235
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=53.37 E-value=70 Score=25.90 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
++.+.+...++++++|+-++... .....+++.+.|++.+..+.+.
T Consensus 16 ~l~~~~~~~g~r~livt~~~~~~----~~g~~~~v~~~L~~~~~~~~~~ 60 (380)
T cd08185 16 ELGEEALKPGKKALIVTGNGSSK----KTGYLDRVIELLKQAGVEVVVF 60 (380)
T ss_pred HHHHHHHhcCCeEEEEeCCCchh----hccHHHHHHHHHHHcCCeEEEe
Confidence 44444544334666666544422 2456788888888877766543
No 236
>PRK07574 formate dehydrogenase; Provisional
Probab=53.28 E-value=1.1e+02 Score=25.04 Aligned_cols=72 Identities=8% Similarity=0.030 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-+|.+|.++ +.+++.+...+.+++..-........ ....++ ..+.+..+++ +.||+++.|
T Consensus 193 ktVGIvG~G~IG----------~~vA~~l~~fG~~V~~~dr~~~~~~~---~~~~g~--~~~~~l~ell--~~aDvV~l~ 255 (385)
T PRK07574 193 MTVGIVGAGRIG----------LAVLRRLKPFDVKLHYTDRHRLPEEV---EQELGL--TYHVSFDSLV--SVCDVVTIH 255 (385)
T ss_pred CEEEEECCCHHH----------HHHHHHHHhCCCEEEEECCCCCchhh---HhhcCc--eecCCHHHHh--hcCCEEEEc
Confidence 456777777774 34566667778876654332211110 001122 2234567778 789999999
Q ss_pred CChhhHHHH
Q psy16939 112 GGISSLMEA 120 (174)
Q Consensus 112 gG~~t~~ea 120 (174)
.-.+.-.+.
T Consensus 256 lPlt~~T~~ 264 (385)
T PRK07574 256 CPLHPETEH 264 (385)
T ss_pred CCCCHHHHH
Confidence 986554443
No 237
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.26 E-value=16 Score=28.62 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCC--CCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHH----H
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDIT--NDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEAS----S 122 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal----~ 122 (174)
..+..+++.+.|++.+..+.+..... ...++. ..... ..+|++|.-||-||+.|++ .
T Consensus 24 ~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a----------------~~~~~-~~~d~vvv~GGDGTi~evv~~l~~ 86 (306)
T PRK11914 24 APHAAERAIARLHHRGVDVVEIVGTDAHDARHLV----------------AAALA-KGTDALVVVGGDGVISNALQVLAG 86 (306)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHH----------------HHHHh-cCCCEEEEECCchHHHHHhHHhcc
Confidence 35667788888888887654433221 111110 01111 5579999999999999987 3
Q ss_pred cCCCeEeccc
Q psy16939 123 LGVPVLGVPF 132 (174)
Q Consensus 123 ~g~P~i~vP~ 132 (174)
.++|+-++|.
T Consensus 87 ~~~~lgiiP~ 96 (306)
T PRK11914 87 TDIPLGIIPA 96 (306)
T ss_pred CCCcEEEEeC
Confidence 4788999995
No 238
>PRK08322 acetolactate synthase; Reviewed
Probab=53.18 E-value=48 Score=28.22 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|- +.+.+|...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 456788888774 46789999999999994
No 239
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=53.11 E-value=78 Score=25.27 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+=++.+|.+ -+.+++.++..+.+++....... ++. ....+ ..|++..+++ .++|+++-|
T Consensus 147 ktvGIiG~GrI----------G~avA~r~~~Fgm~v~y~~~~~~-~~~---~~~~~---~~y~~l~ell--~~sDii~l~ 207 (324)
T COG1052 147 KTLGIIGLGRI----------GQAVARRLKGFGMKVLYYDRSPN-PEA---EKELG---ARYVDLDELL--AESDIISLH 207 (324)
T ss_pred CEEEEECCCHH----------HHHHHHHHhcCCCEEEEECCCCC-hHH---HhhcC---ceeccHHHHH--HhCCEEEEe
Confidence 44455555555 34556666666778777555443 211 11111 4566688888 789999999
Q ss_pred CChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE-ecC---CCCCHHHHHHHHHH
Q psy16939 112 GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI-EPI---QTLTKQSFLKNAQT 168 (174)
Q Consensus 112 gG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~-l~~---~~~~~~~l~~al~~ 168 (174)
+..+-- .....|+..+++.+-|.. +.. .-.+.+.|.++|++
T Consensus 208 ~Plt~~----------------T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 208 CPLTPE----------------TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred CCCChH----------------HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 954321 244557777777655544 222 12355566666653
No 240
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.02 E-value=1e+02 Score=23.59 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccC-CCCCEE-EeecCC---
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKT-LPDNVF-IQKWYP--- 95 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~nv~-~~~~~p--- 95 (174)
++..+++...+.+.||++.||.. +..+.. ....+.++++.+=+..-... . .+.|+. ..+-..
T Consensus 119 ~eA~~~l~~~~~~~iflttGsk~---------L~~f~~-~~~~~~r~~~RvLp~~~~~~---g~~~~~iia~~GPfs~e~ 185 (249)
T PF02571_consen 119 EEAAELLKELGGGRIFLTTGSKN---------LPPFVP-APLPGERLFARVLPTPESAL---GFPPKNIIAMQGPFSKEL 185 (249)
T ss_pred HHHHHHHhhcCCCCEEEeCchhh---------HHHHhh-cccCCCEEEEEECCCccccC---CCChhhEEEEeCCCCHHH
Confidence 45666665554589999999984 333333 23334566666543221110 1 123322 222222
Q ss_pred chhhhcCCCccEEEecCChhh-----HHHHHHcCCCeEec
Q psy16939 96 QTDILAHPNLRLFITHGGISS-----LMEASSLGVPVLGV 130 (174)
Q Consensus 96 ~~~~l~~~~~~~~I~hgG~~t-----~~eal~~g~P~i~v 130 (174)
...++.+-.+|++||.-..++ +..|...|+|+++|
T Consensus 186 n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 186 NRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 234565568999999855444 45578889999998
No 241
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=52.76 E-value=17 Score=27.30 Aligned_cols=34 Identities=6% Similarity=-0.017 Sum_probs=17.5
Q ss_pred cCCccccCChHHHHHHHhcCCCCeEEEEcCCCcC
Q psy16939 11 LCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVD 44 (174)
Q Consensus 11 ~~g~~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~ 44 (174)
+.|+....+.+.+..-.+..++|.++|++|+...
T Consensus 77 VtG~VT~km~~~L~rlyeqmPePK~VIA~GaCA~ 110 (225)
T CHL00023 77 TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTI 110 (225)
T ss_pred EecCCccccHHHHHHHHHhcCCCCeEEEEccccc
Confidence 3444544555555555555445555555555543
No 242
>PRK13059 putative lipid kinase; Reviewed
Probab=52.54 E-value=17 Score=28.41 Aligned_cols=67 Identities=7% Similarity=0.020 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHH---H---c
Q psy16939 50 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEAS---S---L 123 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal---~---~ 123 (174)
....+++.+.+.+.+..+.+...... ... .. . .+... ...|.+|.-||-||+.|.+ . .
T Consensus 18 ~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~---~~---------~--~~~~~-~~~d~vi~~GGDGTv~evv~gl~~~~~ 81 (295)
T PRK13059 18 ISELDKVIRIHQEKGYLVVPYRISLE-YDL---KN---------A--FKDID-ESYKYILIAGGDGTVDNVVNAMKKLNI 81 (295)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEccCc-chH---HH---------H--HHHhh-cCCCEEEEECCccHHHHHHHHHHhcCC
Confidence 34567788888888876554322111 100 00 0 11111 5679999999999999885 2 3
Q ss_pred CCCeEeccc
Q psy16939 124 GVPVLGVPF 132 (174)
Q Consensus 124 g~P~i~vP~ 132 (174)
++|+-++|.
T Consensus 82 ~~~lgviP~ 90 (295)
T PRK13059 82 DLPIGILPV 90 (295)
T ss_pred CCcEEEECC
Confidence 578899996
No 243
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=52.42 E-value=60 Score=26.16 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=24.5
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
+++.+.+...+ +++++|+-.+. . .....+++.+.|+..+..+.+
T Consensus 13 ~~l~~~l~~~g~~~~liv~~~~~-~----~~~~~~~v~~~L~~~g~~~~~ 57 (370)
T cd08192 13 KELPAECAELGIKRPLIVTDPGL-A----ALGLVARVLALLEDAGLAAAL 57 (370)
T ss_pred HHHHHHHHHcCCCeEEEEcCcch-h----hCccHHHHHHHHHHcCCeEEE
Confidence 34555555544 45555554333 2 223567788888877765543
No 244
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=52.32 E-value=15 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.2
Q ss_pred CccEEEecCChhhHHHHHHc----C-----CCeEeccc
Q psy16939 104 NLRLFITHGGISSLMEASSL----G-----VPVLGVPF 132 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~----g-----~P~i~vP~ 132 (174)
..|.+|.-||-||+.|.+.. . .|+.++|.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 46799999999999998642 3 67888887
No 245
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=52.30 E-value=37 Score=27.63 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 99 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~ 99 (174)
.++.+.+...+ +++++|+-++.. ....++++.+.|+..+..+.+..+-..-+.. +++ ..-.++
T Consensus 20 ~~l~~~~~~~g~~~~livt~~~~~-----~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~------~~v-----~~~~~~ 83 (383)
T PRK09860 20 TDAMNMMADYGFTRTLIVTDNMLT-----KLGMAGDVQKALEERNIFSVIYDGTQPNPTT------ENV-----AAGLKL 83 (383)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchh-----hCccHHHHHHHHHHcCCeEEEeCCCCCCcCH------HHH-----HHHHHH
Confidence 44556666555 555655544332 2345778888888777765554332111100 000 001122
Q ss_pred hcCCCccEEEecCChhh
Q psy16939 100 LAHPNLRLFITHGGISS 116 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t 116 (174)
....++|.+|-=||..+
T Consensus 84 ~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 84 LKENNCDSVISLGGGSP 100 (383)
T ss_pred HHHcCCCEEEEeCCchH
Confidence 22367999998888533
No 246
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.74 E-value=78 Score=25.28 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=49.8
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE-EecCCCCccccccCCCCCEEEeecCC-chhh
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW-KIDITNDPVLNAKTLPDNVFIQKWYP-QTDI 99 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~-~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~~ 99 (174)
++.+++....+++++|+ |.... ....+++.+.|+..+..+.+ ...++...+ .+. -.+.
T Consensus 13 ~l~~~~~~~~~r~livt-~~~~~-----~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~--------------~v~~~~~~ 72 (351)
T cd08170 13 ELGEYLARLGKRALIIA-DEFVL-----DLVGAKIEESLAAAGIDARFEVFGGECTRA--------------EIERLAEI 72 (351)
T ss_pred HHHHHHHHhCCeEEEEE-CHHHH-----HHHHHHHHHHHHhCCCeEEEEEeCCcCCHH--------------HHHHHHHH
Confidence 34444443334566666 54432 36788899999887765432 122211100 010 1112
Q ss_pred hcCCCccEEEecCChhhHHHH-----HHcCCCeEeccc
Q psy16939 100 LAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPF 132 (174)
Q Consensus 100 l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~ 132 (174)
....++|++|.=||. |++++ +..++|++.||.
T Consensus 73 ~~~~~~D~IIavGGG-S~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 73 ARDNGADVVIGIGGG-KTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred HhhcCCCEEEEecCc-hhhHHHHHHHHHcCCCEEEeCC
Confidence 222579999999995 44443 334899999996
No 247
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=51.71 E-value=53 Score=22.65 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCc-------cccccCCCCCEEEee-------cCCchhhhcCCCccEEEecCC-
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDP-------VLNAKTLPDNVFIQK-------WYPQTDILAHPNLRLFITHGG- 113 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-------~~~~~~~~~nv~~~~-------~~p~~~~l~~~~~~~~I~hgG- 113 (174)
-.+..++|.+..+..+-.+.+...-..-+ ++.- .-+++ +..+ .+.-..++ .+||++|-+=|
T Consensus 7 HtdWRe~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG-~e~~~-fw~D~k~a~iN~iRT~~li--~~aDvVVvrFGe 82 (141)
T PF11071_consen 7 HTDWREEIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILG-EEPNK-FWRDHKGAKINAIRTRTLI--EKADVVVVRFGE 82 (141)
T ss_pred cchHHHHHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhC-CCCcc-ccccchhhhhhHHHHHHHH--hhCCEEEEEech
Confidence 45667788888886666655543321100 0000 11111 1111 12334455 78999999988
Q ss_pred ----hhhHHHH---HHcCCCeEec
Q psy16939 114 ----ISSLMEA---SSLGVPVLGV 130 (174)
Q Consensus 114 ----~~t~~ea---l~~g~P~i~v 130 (174)
+|+.++| ++.|+|.|++
T Consensus 83 kYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 83 KYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHHHHHHhhHHHHHHcCCCeEEe
Confidence 6777665 7889999999
No 248
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=51.15 E-value=18 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=20.5
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDIT 74 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~ 74 (174)
|++-.|+.. ....+.+....++.+. ++++..|.-
T Consensus 76 illVtG~VT------~~m~~~l~r~ye~~p~pK~VIAvGsC 110 (183)
T PRK14815 76 VMIVAGTVT------YKMALAVRRIYDQMPEPKWVIAMGAC 110 (183)
T ss_pred EEEEeCcCc------hhhHHHHHHHHHhCCCCCEEEEeccc
Confidence 666667763 3345555555555654 678777763
No 249
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.14 E-value=1.4e+02 Score=24.58 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCc--------CCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhh----
Q psy16939 32 GGFVYMSFGSVV--------DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI---- 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~--------~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~---- 99 (174)
.+.|+|+.|... .++.-+..+-..+.+.+...|.+|+...+.... ..+..+...+.....++
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~------~~~~~~~~~~v~~~~~~~~~~ 258 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSL------LTPPGVKSIKVSTAEEMLEAA 258 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCcc------CCCCCcEEEEeccHHHHHHHH
Confidence 578999999531 000001225677889999999998887765432 12334444444332222
Q ss_pred h--cCCCccEEEecCChh
Q psy16939 100 L--AHPNLRLFITHGGIS 115 (174)
Q Consensus 100 l--~~~~~~~~I~hgG~~ 115 (174)
+ ..+..|++|..+|..
T Consensus 259 ~~~~~~~~D~~i~~Aavs 276 (390)
T TIGR00521 259 LNELAKDFDIFISAAAVA 276 (390)
T ss_pred HHhhcccCCEEEEccccc
Confidence 2 126789999999864
No 250
>PRK06487 glycerate dehydrogenase; Provisional
Probab=50.70 E-value=1e+02 Score=24.46 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-++.+|.++ +++++.++..+.+++..... ..+ .. ..+.+..+++ +.+|+++.|
T Consensus 149 ktvgIiG~G~IG----------~~vA~~l~~fgm~V~~~~~~-~~~--------~~---~~~~~l~ell--~~sDiv~l~ 204 (317)
T PRK06487 149 KTLGLLGHGELG----------GAVARLAEAFGMRVLIGQLP-GRP--------AR---PDRLPLDELL--PQVDALTLH 204 (317)
T ss_pred CEEEEECCCHHH----------HHHHHHHhhCCCEEEEECCC-CCc--------cc---ccccCHHHHH--HhCCEEEEC
Confidence 567778888774 34566666778887654321 111 11 2245778888 789999999
Q ss_pred CChh
Q psy16939 112 GGIS 115 (174)
Q Consensus 112 gG~~ 115 (174)
.-.+
T Consensus 205 lPlt 208 (317)
T PRK06487 205 CPLT 208 (317)
T ss_pred CCCC
Confidence 8644
No 251
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=50.68 E-value=83 Score=25.40 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE-EecC-CCCccccccCCCCCEEEeecCCch
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW-KIDI-TNDPVLNAKTLPDNVFIQKWYPQT 97 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~-~~~~-~~~~~~~~~~~~~nv~~~~~~p~~ 97 (174)
+++.+++.... +++++|+- +.. .....+.+.+.++..+..+-+ ...+ +.-+.+ .... .-.
T Consensus 12 ~~l~~~l~~~g~~rvlvVtd-~~v-----~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~---------~~v~--~~~ 74 (355)
T cd08197 12 DSVLGYLPELNADKYLLVTD-SNV-----EDLYGHRLLEYLREAGAPVELLSVPSGEEHKTL---------STLS--DLV 74 (355)
T ss_pred HHHHHHHHhcCCCeEEEEEC-ccH-----HHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCH---------HHHH--HHH
Confidence 34555555444 45555554 432 234677888888887765322 2222 111100 0000 001
Q ss_pred hhhcCCCcc---EEEecCChhhHHHHH-------HcCCCeEecccc
Q psy16939 98 DILAHPNLR---LFITHGGISSLMEAS-------SLGVPVLGVPFF 133 (174)
Q Consensus 98 ~~l~~~~~~---~~I~hgG~~t~~eal-------~~g~P~i~vP~~ 133 (174)
..+....+| ++|.=||. ++.++. ..|+|.+.||..
T Consensus 75 ~~~~~~~~dr~~~IIAvGGG-sv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 75 ERALALGATRRSVIVALGGG-VVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHHHcCCCCCcEEEEECCc-HHHHHHHHHHHHhccCCCEEEecCc
Confidence 111113455 88888884 444432 248999999974
No 252
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=50.64 E-value=16 Score=25.29 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEecC
Q psy16939 50 EETKLGFLEVFKQLKL-PIFWKIDI 73 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~-~~i~~~~~ 73 (174)
..+.+.+.++.+..+. ++++.+|.
T Consensus 61 ~~~~e~lkk~Yea~PePKiViA~Ga 85 (148)
T COG3260 61 RQMREPLKKAYEAMPEPKIVIAVGA 85 (148)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 3344445555555554 45555544
No 253
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=50.21 E-value=1.4e+02 Score=24.22 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=83.6
Q ss_pred CCeEEEE---cCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEE
Q psy16939 32 GGFVYMS---FGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLF 108 (174)
Q Consensus 32 ~~~v~vs---~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~ 108 (174)
.-.||++ +|......+.+.+.+++.++.+.+.+.++.+..+..-... ....+..+..-|..-.+|.+
T Consensus 27 ADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~----------~~~~~~~~l~~l~e~GvDav 96 (347)
T COG0826 27 ADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHND----------ELETLERYLDRLVELGVDAV 96 (347)
T ss_pred CCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccc----------hhhHHHHHHHHHHHcCCCEE
Confidence 4678888 4555443335777899999999999999888877533221 11112222333333557766
Q ss_pred EecCChhhHHHHHHcC--CCeEeccc-cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHh
Q psy16939 109 ITHGGISSLMEASSLG--VPVLGVPF-FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTM 169 (174)
Q Consensus 109 I~hgG~~t~~eal~~g--~P~i~vP~-~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~l 169 (174)
|-.- .+.+.=+-..+ .|+.+=++ ...-..-++...+.|+-+++...+++.++|.+..+++
T Consensus 97 iv~D-pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 97 IVAD-PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred EEcC-HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 6532 33344444334 77777776 3466777888899999999989999999999988765
No 254
>PRK10537 voltage-gated potassium channel; Provisional
Probab=50.05 E-value=1.4e+02 Score=24.49 Aligned_cols=105 Identities=9% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC---CCccEEEecCChhh--HH---HHHHcC-
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH---PNLRLFITHGGISS--LM---EASSLG- 124 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~---~~~~~~I~hgG~~t--~~---eal~~g- 124 (174)
+.+++.|.+.+.++++.... ..++.. ....++. .+-..+.+.|.. .+|+.+|.-.+... .. .+-..+
T Consensus 253 ~~v~~~L~~~g~~vvVId~d-~~~~~~--~~g~~vI-~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 253 INTYLGLRQRGQAVTVIVPL-GLEHRL--PDDADLI-PGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred HHHHHHHHHCCCCEEEEECc-hhhhhc--cCCCcEE-EeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 44566666677777665543 211100 1122333 333345555532 56777877555322 11 111222
Q ss_pred -CCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHH
Q psy16939 125 -VPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKN 165 (174)
Q Consensus 125 -~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~a 165 (174)
+..+.. .+...|...+++.|+-.++.+.+...+.+.+.
T Consensus 329 ~~kIIa~---v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~ 367 (393)
T PRK10537 329 DVKTVAA---VNDSKNLEKIKRVHPDMIFSPQLLGSELLART 367 (393)
T ss_pred CCcEEEE---ECCHHHHHHHHhcCCCEEECHHHHHHHHHHHH
Confidence 223322 44567889999999999986554444444433
No 255
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=49.97 E-value=65 Score=25.88 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=28.5
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI 73 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 73 (174)
++++++.|+.+. -.-+-.+.++|.+.|++|.+.+..
T Consensus 2 rIl~~~~p~~GH-----v~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIGSRGD-----VQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred eEEEEeCCCcch-----HHHHHHHHHHHHHCCCeEEEeeCH
Confidence 578889998764 445778899999999998888765
No 256
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.89 E-value=39 Score=24.50 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHcCCCeEeccc----cchHHHHHHHHHHcCceeEe
Q psy16939 119 EASSLGVPVLGVPF----FGDQYRNMVLLRHRGYALIE 152 (174)
Q Consensus 119 eal~~g~P~i~vP~----~~dQ~~na~~l~~~G~g~~l 152 (174)
.++..++|++++|. ..-+..|...+++.|+-+.-
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~ 144 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILP 144 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEEC
Confidence 35789999999995 23567888999999888763
No 257
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=49.74 E-value=1.4e+02 Score=24.25 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=66.0
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee-c---CC
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK-W---YP 95 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~-~---~p 95 (174)
+++.+.++... ...-+-++||... -.++.++.+.|.+.+..+.+....-.......+++...+ | .+
T Consensus 5 ~~~~~~~~~y~~~~~~i~~~~shsa---------L~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~ 75 (358)
T PRK13278 5 EEILEILKKYDLDNITIATIGSHSS---------LQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILN 75 (358)
T ss_pred HHHHHHHHhcCcccceEEEEecccH---------HHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcC
Confidence 45777888777 6678888999864 337888899999777666554321111113335555555 5 22
Q ss_pred chhhhcC-CCccEEEecCChhhH--HHHHH-cCCCeEecc----ccchHHHHHHHHHHcCcee
Q psy16939 96 QTDILAH-PNLRLFITHGGISSL--MEASS-LGVPVLGVP----FFGDQYRNMVLLRHRGYAL 150 (174)
Q Consensus 96 ~~~~l~~-~~~~~~I~hgG~~t~--~eal~-~g~P~i~vP----~~~dQ~~na~~l~~~G~g~ 150 (174)
....... ..-.++|.||..... .+.+. +++|+..=+ +..|...--..++++|+-.
T Consensus 76 ~~~~~~l~~~~~iiIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~aGIp~ 138 (358)
T PRK13278 76 EAVQEKLREMNAILIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEAGIRI 138 (358)
T ss_pred HHHHHHHhhcCcEEEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 2211111 233358888754322 23333 777733222 2234444445666666654
No 258
>PRK13054 lipid kinase; Reviewed
Probab=49.64 E-value=21 Score=27.87 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCC--CCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHc----
Q psy16939 50 EETKLGFLEVFKQLKLPIFWKIDIT--NDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSL---- 123 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~---- 123 (174)
.....++...|...+..+.+..... ...++. .+.. ....|.+|.-||-||++|.+..
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a----------------~~~~-~~~~d~vvv~GGDGTl~evv~~l~~~ 79 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVTWEKGDAARYV----------------EEAL-ALGVATVIAGGGDGTINEVATALAQL 79 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHH----------------HHHH-HcCCCEEEEECCccHHHHHHHHHHhh
Confidence 3456677778888777654433221 111110 0111 1568999999999999998754
Q ss_pred --C--CCeEeccc
Q psy16939 124 --G--VPVLGVPF 132 (174)
Q Consensus 124 --g--~P~i~vP~ 132 (174)
+ .|+-++|.
T Consensus 80 ~~~~~~~lgiiP~ 92 (300)
T PRK13054 80 EGDARPALGILPL 92 (300)
T ss_pred ccCCCCcEEEEeC
Confidence 3 48888896
No 259
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=49.33 E-value=1.3e+02 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.9
Q ss_pred CCccEEEecCChh-----------hHHHHHHcCCCeEeccc
Q psy16939 103 PNLRLFITHGGIS-----------SLMEASSLGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~-----------t~~eal~~g~P~i~vP~ 132 (174)
.++|++|.-||.. -+.-|...|+|++++++
T Consensus 116 ~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 116 SGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 7899999977743 12345778999999986
No 260
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.16 E-value=35 Score=25.70 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=45.8
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCCchh---------hhcC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTD---------ILAH 102 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~---------~l~~ 102 (174)
..|+++.|+.+. -.++.+.+.+.|.+||+..+... +.+... ..|.-...+.-+.+.+ +=.|
T Consensus 6 nTiLITGG~sGI--------Gl~lak~f~elgN~VIi~gR~e~~L~e~~~-~~p~~~t~v~Dv~d~~~~~~lvewLkk~~ 76 (245)
T COG3967 6 NTILITGGASGI--------GLALAKRFLELGNTVIICGRNEERLAEAKA-ENPEIHTEVCDVADRDSRRELVEWLKKEY 76 (245)
T ss_pred cEEEEeCCcchh--------hHHHHHHHHHhCCEEEEecCcHHHHHHHHh-cCcchheeeecccchhhHHHHHHHHHhhC
Confidence 689999999875 45667777788999998766532 221100 2222222222121111 1236
Q ss_pred CCccEEEecCChhhHHH
Q psy16939 103 PNLRLFITHGGISSLME 119 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~e 119 (174)
|..+++|..+|..--.+
T Consensus 77 P~lNvliNNAGIqr~~d 93 (245)
T COG3967 77 PNLNVLINNAGIQRNED 93 (245)
T ss_pred Cchheeeecccccchhh
Confidence 99999999999754444
No 261
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=48.84 E-value=55 Score=25.09 Aligned_cols=74 Identities=5% Similarity=0.022 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCC-CCEEEeec--CCchh--------h
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLP-DNVFIQKW--YPQTD--------I 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~-~nv~~~~~--~p~~~--------~ 99 (174)
.++++|+..|++. -+++.+.|.+.|++++...+..+ ++++.. +.. ..+..... -+... .
T Consensus 6 ~kv~lITGASSGi--------G~A~A~~l~~~G~~vvl~aRR~drL~~la~-~~~~~~~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 6 GKVALITGASSGI--------GEATARALAEAGAKVVLAARREERLEALAD-EIGAGAALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred CcEEEEecCcchH--------HHHHHHHHHHCCCeEEEEeccHHHHHHHHH-hhccCceEEEeeccCCHHHHHHHHHHHH
Confidence 4789999888865 67788899999999998877643 333222 233 23333332 23222 1
Q ss_pred hcCCCccEEEecCCh
Q psy16939 100 LAHPNLRLFITHGGI 114 (174)
Q Consensus 100 l~~~~~~~~I~hgG~ 114 (174)
-.+.+.|+.|+++|.
T Consensus 77 ~~~g~iDiLvNNAGl 91 (246)
T COG4221 77 EEFGRIDILVNNAGL 91 (246)
T ss_pred HhhCcccEEEecCCC
Confidence 113679999999994
No 262
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=48.83 E-value=59 Score=23.02 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|+|-| .+.||...+.|+|++.
T Consensus 59 g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 59 GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 4567778888754 4568999999999994
No 263
>PRK12367 short chain dehydrogenase; Provisional
Probab=48.61 E-value=1.1e+02 Score=22.89 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=39.9
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CCccccccCCCCCEEEeecCCchhhh-cCCCccEEEe
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-NDPVLNAKTLPDNVFIQKWYPQTDIL-AHPNLRLFIT 110 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~nv~~~~~~p~~~~l-~~~~~~~~I~ 110 (174)
+.++|+.||.+. -..+.+.+.+.+++++...... ...+... .........+--...++. .....|++|+
T Consensus 15 k~~lITGas~gI--------G~ala~~l~~~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~iDilVn 85 (245)
T PRK12367 15 KRIGITGASGAL--------GKALTKAFRAKGAKVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDKQLASLDVLIL 85 (245)
T ss_pred CEEEEEcCCcHH--------HHHHHHHHHHCCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhcCCCCEEEE
Confidence 688899888754 4566777777888877665432 1110000 111112222222222211 1267999999
Q ss_pred cCChh
Q psy16939 111 HGGIS 115 (174)
Q Consensus 111 hgG~~ 115 (174)
.+|.+
T Consensus 86 nAG~~ 90 (245)
T PRK12367 86 NHGIN 90 (245)
T ss_pred CCccC
Confidence 99864
No 264
>KOG1687|consensus
Probab=48.60 E-value=24 Score=24.38 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=17.5
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDI 73 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~ 73 (174)
+++..|+.. +.+...+.+.-.+.+. +.++..|+
T Consensus 74 ~iivAGTlT------nKMAPalrkvYdQMPEpr~VisMGs 107 (168)
T KOG1687|consen 74 LIIVAGTLT------NKMAPALRKVYDQMPEPRWVISMGS 107 (168)
T ss_pred EEEEeccch------hhhcHHHHHHHhhCCCCeeEEEecc
Confidence 455556653 3334445555555655 56666554
No 265
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=48.35 E-value=80 Score=25.42 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=21.8
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
+++.+.+...+ +++++|+-++.. ....+.+.+++.+..+.+.
T Consensus 12 ~~l~~~~~~~g~~~~livtd~~~~--------~~~~~~~~l~~~~~~~~~~ 54 (367)
T cd08182 12 AKLPSLLKGLGGKRVLLVTGPRSA--------IASGLTDILKPLGTLVVVF 54 (367)
T ss_pred HHHHHHHHhcCCCeEEEEeCchHH--------HHHHHHHHHHHcCCeEEEE
Confidence 34555555444 456666544442 2344556666666555443
No 266
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=48.31 E-value=1.1e+02 Score=26.43 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCCCCEEEeecCCchh---hhcCCCccEEEecCC---hhhHHHHHHcCCCeEecccc--------------------chH
Q psy16939 83 TLPDNVFIQKWYPQTD---ILAHPNLRLFITHGG---ISSLMEASSLGVPVLGVPFF--------------------GDQ 136 (174)
Q Consensus 83 ~~~~nv~~~~~~p~~~---~l~~~~~~~~I~hgG---~~t~~eal~~g~P~i~vP~~--------------------~dQ 136 (174)
.+|.-|.-.+.+++.+ +| .++.++|-=|. .-+-.||+++|.|.|--=+. ..|
T Consensus 319 ~~P~~V~NHG~l~~~ef~~lL--~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQ 396 (559)
T PF15024_consen 319 NVPSFVKNHGILSGDEFQQLL--RKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQ 396 (559)
T ss_pred ccchhhhhcCcCCHHHHHHHH--HhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccC
Confidence 4455555555555544 55 78999998886 46889999999988653211 012
Q ss_pred HHHHHHHH-HcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 137 YRNMVLLR-HRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 137 ~~na~~l~-~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.. +++ ..|-=-+..-+.-+.+++++|++++|+.+
T Consensus 397 hP---Y~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 397 HP---YAEEFIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred Ch---HHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 22 233 24433343333347899999999998764
No 267
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=48.03 E-value=74 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEeccccc
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGVPFFG 134 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~ 134 (174)
..+|++|+.||....... ...+|+|-|+..+
T Consensus 63 ~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 63 ERCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred CCCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 579999999999988887 4579999998754
No 268
>KOG4180|consensus
Probab=47.99 E-value=10 Score=30.24 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEec
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGV 130 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~v 130 (174)
+.||++|+-||-||+.-|.. --+|+|.+
T Consensus 104 ~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred chhhEEEEecCccceeehhhhhhccCCceeee
Confidence 88999999999999987644 46899998
No 269
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=47.10 E-value=80 Score=27.08 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHH
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 141 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~ 141 (174)
..+|++|+.||....... ...+|+|-|+..+--...|.
T Consensus 53 ~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~~Dil~al 90 (526)
T TIGR02329 53 ERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTGFDVMQAL 90 (526)
T ss_pred CCCcEEEECchHHHHHHH-hCCCCEEEecCChhhHHHHH
Confidence 579999999998888887 45799999987543333333
No 270
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=47.02 E-value=59 Score=25.55 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=39.9
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
|+++.||... -..+...|...+.++.+.++....... ..+.++...+.+++..- -.+|++|+=+|.
T Consensus 1 IliTGgTGlI--------G~~L~~~L~~~gh~v~iltR~~~~~~~---~~~~~v~~~~~~~~~~~---~~~DavINLAG~ 66 (297)
T COG1090 1 ILITGGTGLI--------GRALTARLRKGGHQVTILTRRPPKASQ---NLHPNVTLWEGLADALT---LGIDAVINLAGE 66 (297)
T ss_pred CeEeccccch--------hHHHHHHHHhCCCeEEEEEcCCcchhh---hcCccccccchhhhccc---CCCCEEEECCCC
Confidence 4566666543 456777888888988888876543210 33444443333332221 159999999995
Q ss_pred h
Q psy16939 115 S 115 (174)
Q Consensus 115 ~ 115 (174)
+
T Consensus 67 ~ 67 (297)
T COG1090 67 P 67 (297)
T ss_pred c
Confidence 3
No 271
>PRK06179 short chain dehydrogenase; Provisional
Probab=46.94 E-value=1e+02 Score=23.05 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=38.5
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCE--EEeecCCchh---hhc-----C
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNV--FIQKWYPQTD---ILA-----H 102 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv--~~~~~~p~~~---~l~-----~ 102 (174)
+.++|+.||... -..+.+.|.+.+++++......... ....++ ...+..+... ++. +
T Consensus 5 ~~vlVtGasg~i--------G~~~a~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 5 KVALVTGASSGI--------GRATAEKLARAGYRVFGTSRNPARA-----APIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CEEEEecCCCHH--------HHHHHHHHHHCCCEEEEEeCChhhc-----cccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 578888888753 3455666667788877655432211 111222 2333333222 111 1
Q ss_pred CCccEEEecCChh
Q psy16939 103 PNLRLFITHGGIS 115 (174)
Q Consensus 103 ~~~~~~I~hgG~~ 115 (174)
...|++|+.+|..
T Consensus 72 g~~d~li~~ag~~ 84 (270)
T PRK06179 72 GRIDVLVNNAGVG 84 (270)
T ss_pred CCCCEEEECCCCC
Confidence 4579999999964
No 272
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=46.87 E-value=1.4e+02 Score=24.40 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCcc-c---------cc----cCCCCCEEEeecCCchh---hhcCCCccEEEec
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPV-L---------NA----KTLPDNVFIQKWYPQTD---ILAHPNLRLFITH 111 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~-~---------~~----~~~~~nv~~~~~~p~~~---~l~~~~~~~~I~h 111 (174)
+...+..+++++++.+.++.+.+.+..... + .. ....-.+.+.+|+||.+ +| -.||+-+-+
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL--w~cD~NfVR 270 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL--WACDFNFVR 270 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH--HhCccceEe
Confidence 344588899999988877665554422110 0 00 01233578888998664 77 679999999
Q ss_pred CChhhHHHHHHcCCCeEeccc
Q psy16939 112 GGISSLMEASSLGVPVLGVPF 132 (174)
Q Consensus 112 gG~~t~~eal~~g~P~i~vP~ 132 (174)
|- .|..-|.-+|+|+|=-.+
T Consensus 271 GE-DSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 271 GE-DSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred cc-hHHHHHHHhCCCceEecC
Confidence 98 489999999999986644
No 273
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=46.74 E-value=1.5e+02 Score=24.45 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEec
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGV 130 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~v 130 (174)
.+..+++++.|-| .+.+|...++|+|++
T Consensus 62 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 62 GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4466777777744 567899999999999
No 274
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=46.50 E-value=23 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDIT 74 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~ 74 (174)
|++-.|+... .....+....++.+. +++++.|.-
T Consensus 84 vllVtG~VT~------~m~~~l~~~~e~~p~pK~VIAvGsC 118 (182)
T PRK14816 84 MIMVCGTITN------KMAPVLKRLYDQMADPKYVIAVGGC 118 (182)
T ss_pred EEEEecCCcc------hhHHHHHHHHHhcCCCCEEEEeccc
Confidence 6666777743 334444555555554 678877763
No 275
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=46.06 E-value=1.2e+02 Score=24.30 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=50.3
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--CccccccCCCCCEEEeecCCch
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--DPVLNAKTLPDNVFIQKWYPQT 97 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~~~~~~~~~~~nv~~~~~~p~~ 97 (174)
+++.+.+.... +++++|+ |... .....+++.+.|++.+..+.+...... .+.+ ..+ ....
T Consensus 12 ~~l~~~~~~~~~~~~livt-d~~~-----~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~---------~~v--~~~~ 74 (348)
T cd08175 12 ERLPEILKEFGYKKALIVA-DENT-----YAAAGKKVEALLKRAGVVVLLIVLPAGDLIADE---------KAV--GRVL 74 (348)
T ss_pred HHHHHHHHhcCCCcEEEEE-CCcH-----HHHHHHHHHHHHHHCCCeeEEeecCCCcccCCH---------HHH--HHHH
Confidence 34555555544 5666676 4332 122357888888887765544332111 1100 000 0011
Q ss_pred hhhcCCCccEEEecCChhhHHHH-----HHcCCCeEecccc
Q psy16939 98 DILAHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPFF 133 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~~ 133 (174)
..+. .++|++|.=||. ++.++ ...|+|.+.||..
T Consensus 75 ~~~~-~~~d~IIaIGGG-s~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 75 KELE-RDTDLIIAVGSG-TINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred HHhh-ccCCEEEEECCc-HHHHHHHHHHHhcCCCEEEecCc
Confidence 1122 268999999984 44443 3458999999974
No 276
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=45.86 E-value=46 Score=23.91 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=31.4
Q ss_pred HcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHH
Q psy16939 122 SLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQT 168 (174)
Q Consensus 122 ~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ 168 (174)
..|+|---+=++.|+..|...+.++|+-.+.-++.++.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHH
Confidence 35666555556889999999888899988877788999999988875
No 277
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=45.56 E-value=96 Score=21.17 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=31.3
Q ss_pred HHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 22 DLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 22 ~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
.+.+...... ..+|++++|+-.. ...+.++++++.+. .+.++++...
T Consensus 40 ~l~~~~~~~~~~d~vvi~lGtNd~---~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 40 LIRQLKDSGKLRKTVVIGLGTNGP---FTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred HHHHHHHcCCCCCeEEEEecCCCC---CCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3444444322 5899999999876 36778888888874 2456666544
No 278
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.56 E-value=1.9e+02 Score=24.56 Aligned_cols=131 Identities=14% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--C-ccc-cccCCCCCEEEee-cCC-------chhh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--D-PVL-NAKTLPDNVFIQK-WYP-------QTDI 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~-~~~-~~~~~~~nv~~~~-~~p-------~~~~ 99 (174)
+++++...||+.. -....+++.|.+.+..+-+...... + ... .+ .+..+-.+.+ |-+ +-.+
T Consensus 71 k~IllgVtGsIAa------yka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~-~ls~~~V~~d~~~~~~~~~~~Hi~l 143 (475)
T PRK13982 71 KRVTLIIGGGIAA------YKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTAS-ALSGQRVYTDLFDPESEFDAGHIRL 143 (475)
T ss_pred CEEEEEEccHHHH------HHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHH-HhcCCceEecCCCcccccCccchhh
Confidence 4566666676643 2466677777777876555444321 0 000 00 1222322222 211 2222
Q ss_pred hcCCCccEEE-ecCChhhHH-------------HHHHcCCCeEeccccchH-------HHHHHHHHHcCceeEecCC---
Q psy16939 100 LAHPNLRLFI-THGGISSLM-------------EASSLGVPVLGVPFFGDQ-------YRNMVLLRHRGYALIEPIQ--- 155 (174)
Q Consensus 100 l~~~~~~~~I-~hgG~~t~~-------------eal~~g~P~i~vP~~~dQ-------~~na~~l~~~G~g~~l~~~--- 155 (174)
. ..+|++| .-+-+||+. -.++.++|++++|..... ..|...|.+.|+-++=...
T Consensus 144 a--~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~l 221 (475)
T PRK13982 144 A--RDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEM 221 (475)
T ss_pred h--hhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCcc
Confidence 2 4677665 444444432 235678999999975433 4788888888877652211
Q ss_pred ----------CCCHHHHHHHHHHhhc
Q psy16939 156 ----------TLTKQSFLKNAQTMLN 171 (174)
Q Consensus 156 ----------~~~~~~l~~al~~ll~ 171 (174)
-.++++|..++.+++.
T Consensus 222 A~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 222 AERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 1357788888877763
No 279
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=45.44 E-value=71 Score=24.67 Aligned_cols=77 Identities=17% Similarity=0.035 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCCchhhhc-CCCccEEEecCChh--------h--
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTDILA-HPNLRLFITHGGIS--------S-- 116 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~~l~-~~~~~~~I~hgG~~--------t-- 116 (174)
.+-+++.+++.+. .+..+++..+... .. .. .++.-.+......++. ..++|++|.-||.. +
T Consensus 14 De~~l~~~l~~l~-~~~~~~v~s~~p~~~~-----~~-~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~ 86 (298)
T TIGR03609 14 DEALLAALLRELP-PGVEPTVLSNDPAETA-----KL-YGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLL 86 (298)
T ss_pred hHHHHHHHHHhcC-CCCeEEEecCChHHHH-----hh-cCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHH
Confidence 3445666665553 2344444443322 11 11 1444444333222221 16799999877721 1
Q ss_pred -----HHHHHHcCCCeEeccc
Q psy16939 117 -----LMEASSLGVPVLGVPF 132 (174)
Q Consensus 117 -----~~eal~~g~P~i~vP~ 132 (174)
..-|...|+|++.++.
T Consensus 87 ~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 87 YYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 1224457999999876
No 280
>PRK13055 putative lipid kinase; Reviewed
Probab=45.02 E-value=28 Score=27.72 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=46.0
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE-ecCC--CCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK-IDIT--NDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~-~~~~--~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
++++-.|... .......++...|.+.+..+.+. .... ...++.+ +.. ....|++|.-
T Consensus 7 iI~NP~sG~~---~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~----------------~~~-~~~~d~vvv~ 66 (334)
T PRK13055 7 LIYNPTSGQE---IMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAK----------------RAA-EAGFDLIIAA 66 (334)
T ss_pred EEECCCCCch---hHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHH----------------HHh-hcCCCEEEEE
Confidence 4455444322 13456778888888887765432 2211 1111100 011 1457899999
Q ss_pred CChhhHHHHHHc------CCCeEeccc
Q psy16939 112 GGISSLMEASSL------GVPVLGVPF 132 (174)
Q Consensus 112 gG~~t~~eal~~------g~P~i~vP~ 132 (174)
||-||+.|++.. +.|+-++|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 999999998753 467888895
No 281
>PRK13337 putative lipid kinase; Reviewed
Probab=44.86 E-value=28 Score=27.22 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecC--CCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHc----
Q psy16939 50 EETKLGFLEVFKQLKLPIFWKIDI--TNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSL---- 123 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~~i~~~~~--~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~---- 123 (174)
.....++...+.+.+..+.+.... ....++.+ ... ....|.+|.-||-||+.|++..
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~----------------~~~-~~~~d~vvv~GGDGTl~~vv~gl~~~ 80 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGDATLAAE----------------RAV-ERKFDLVIAAGGDGTLNEVVNGIAEK 80 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHH----------------HHH-hcCCCEEEEEcCCCHHHHHHHHHhhC
Confidence 345667788888888765433222 22121100 111 1457999999999999999862
Q ss_pred --CCCeEeccc
Q psy16939 124 --GVPVLGVPF 132 (174)
Q Consensus 124 --g~P~i~vP~ 132 (174)
..|+-++|.
T Consensus 81 ~~~~~lgiiP~ 91 (304)
T PRK13337 81 ENRPKLGIIPV 91 (304)
T ss_pred CCCCcEEEECC
Confidence 347788895
No 282
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=44.82 E-value=57 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=23.9
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC--CCcEEEEecC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQL--KLPIFWKIDI 73 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~ 73 (174)
.+++++|||.... -....+..+.+.++.. ++.|.|+..+
T Consensus 2 AIllvsFGTs~~~--ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPE--AREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CC--CCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHH--HHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 5799999998763 2344677777777665 4588888766
No 283
>PLN02928 oxidoreductase family protein
Probab=44.64 E-value=1e+02 Score=24.74 Aligned_cols=72 Identities=3% Similarity=0.044 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCC--C--CCE--EEeecCCchhhhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTL--P--DNV--FIQKWYPQTDILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~--~nv--~~~~~~p~~~~l~~~~~ 105 (174)
+.+.++.+|.++ +.+++.+...|.+++..-............. . ..+ ....+....+++ +.+
T Consensus 160 ktvGIiG~G~IG----------~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell--~~a 227 (347)
T PLN02928 160 KTVFILGYGAIG----------IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFA--GEA 227 (347)
T ss_pred CEEEEECCCHHH----------HHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHH--hhC
Confidence 567788888874 3456667777888776433211100000000 0 000 011445667788 789
Q ss_pred cEEEecCChh
Q psy16939 106 RLFITHGGIS 115 (174)
Q Consensus 106 ~~~I~hgG~~ 115 (174)
|+++.|.-.+
T Consensus 228 DiVvl~lPlt 237 (347)
T PLN02928 228 DIVVLCCTLT 237 (347)
T ss_pred CEEEECCCCC
Confidence 9999998654
No 284
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.64 E-value=2.4e+02 Score=26.29 Aligned_cols=131 Identities=13% Similarity=0.098 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC---cEE-EEecC--C-CCcc-------c-------cccCC----CC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL---PIF-WKIDI--T-NDPV-------L-------NAKTL----PD 86 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~---~~i-~~~~~--~-~~~~-------~-------~~~~~----~~ 86 (174)
.+.++++.+.......+ ...+.++-..|++.+. +++ +++.. . ..++ + ..+.. .+
T Consensus 362 g~kiIlgVDRLD~~KGI-~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~P 440 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGI-PQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVP 440 (934)
T ss_pred CceEEEEeeccccccCH-HHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcce
Confidence 35699999998885432 3445556556776654 333 33321 1 1110 0 00000 01
Q ss_pred CEEEeecCCchhhhcC-CCccEEEecC---ChhhH-HHHHHcCC---CeEeccccchHHHHHHHHHHcC-ceeEecCCCC
Q psy16939 87 NVFIQKWYPQTDILAH-PNLRLFITHG---GISSL-MEASSLGV---PVLGVPFFGDQYRNMVLLRHRG-YALIEPIQTL 157 (174)
Q Consensus 87 nv~~~~~~p~~~~l~~-~~~~~~I~hg---G~~t~-~eal~~g~---P~i~vP~~~dQ~~na~~l~~~G-~g~~l~~~~~ 157 (174)
-.++...++..+++++ ..||+++... |+|.+ .|+++++. .+++++.+.- -|. ..| -|+.+++ +
T Consensus 441 v~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaG---aa~---~L~~~AllVNP--~ 512 (934)
T PLN03064 441 IHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAG---AAQ---SLGAGAILVNP--W 512 (934)
T ss_pred EEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCc---hHH---HhCCceEEECC--C
Confidence 1223334666654443 7899998754 76655 59999855 3344454321 111 223 4677755 4
Q ss_pred CHHHHHHHHHHhhc
Q psy16939 158 TKQSFLKNAQTMLN 171 (174)
Q Consensus 158 ~~~~l~~al~~ll~ 171 (174)
+.+++.++|.+.|+
T Consensus 513 D~~~vA~AI~~AL~ 526 (934)
T PLN03064 513 NITEVAASIAQALN 526 (934)
T ss_pred CHHHHHHHHHHHHh
Confidence 68889999988876
No 285
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=44.16 E-value=53 Score=22.22 Aligned_cols=9 Identities=0% Similarity=-0.167 Sum_probs=4.1
Q ss_pred CcEEEEecC
Q psy16939 65 LPIFWKIDI 73 (174)
Q Consensus 65 ~~~i~~~~~ 73 (174)
+.+|+.+|+
T Consensus 59 ~DlvittGG 67 (133)
T cd00758 59 ADLVLTTGG 67 (133)
T ss_pred CCEEEECCC
Confidence 344444444
No 286
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=44.06 E-value=1.1e+02 Score=22.04 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=29.2
Q ss_pred cCCCeEeccccc-------hHHHHHHHHHHcCceeEecCC------------CCCHHHHHHHHHH
Q psy16939 123 LGVPVLGVPFFG-------DQYRNMVLLRHRGYALIEPIQ------------TLTKQSFLKNAQT 168 (174)
Q Consensus 123 ~g~P~i~vP~~~-------dQ~~na~~l~~~G~g~~l~~~------------~~~~~~l~~al~~ 168 (174)
.++|++++|... =-..|...+++.|+-+.-... -.+.++|.+.+.+
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~~ 175 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIKE 175 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHHH
Confidence 389999999432 235577888888886553211 1356677666654
No 287
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=43.86 E-value=52 Score=27.18 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC----CCCccccccCCCCCE-EEeecCCchhhhcCCCcc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI----TNDPVLNAKTLPDNV-FIQKWYPQTDILAHPNLR 106 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~----~~~~~~~~~~~~~nv-~~~~~~p~~~~l~~~~~~ 106 (174)
||.|-+|+=+. ...-...+.+.|++.++.+++.+.. ..++++-+ ...+ -+.+.- -.++-.+ .-
T Consensus 185 kp~I~iTmfGv------TTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~---~G~~~~VlDlT-ttEl~d~--l~ 252 (403)
T PF06792_consen 185 KPLIGITMFGV------TTPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLIR---EGQFDGVLDLT-TTELADE--LF 252 (403)
T ss_pred CcEEEEECCCC------cHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHH---cCCcEEEEECc-HHHHHHH--Hh
Confidence 78888876322 3456888999999999987776432 22333211 1111 222222 2222211 11
Q ss_pred EEEecCChhhHHHHHHcCCCeEeccc
Q psy16939 107 LFITHGGISSLMEASSLGVPVLGVPF 132 (174)
Q Consensus 107 ~~I~hgG~~t~~eal~~g~P~i~vP~ 132 (174)
--+..+|-.-+-.|...|+|+|+.|-
T Consensus 253 GGv~sagp~Rl~AA~~~GIP~Vvs~G 278 (403)
T PF06792_consen 253 GGVLSAGPDRLEAAARAGIPQVVSPG 278 (403)
T ss_pred CCCCCCCchHHHHHHHcCCCEEEecC
Confidence 12677888999999999999999984
No 288
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=43.53 E-value=1.4e+02 Score=22.57 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
+.+.+|+.. .++++||-.-|... ......++..+++++.+..+......++ ..+.+
T Consensus 22 ~~~~~~~~~-~~~v~fIPtAs~~~---~~~~y~~~~~~af~~lG~~v~~l~~~~d--------------------~~~~l 77 (233)
T PRK05282 22 PLIAELLAG-RRKAVFIPYAGVTQ---SWDDYTAKVAEALAPLGIEVTGIHRVAD--------------------PVAAI 77 (233)
T ss_pred HHHHHHHcC-CCeEEEECCCCCCC---CHHHHHHHHHHHHHHCCCEEEEeccchh--------------------hHHHH
Confidence 445566653 35788888877543 3567788899999999887554321110 12334
Q ss_pred cCCCccEEEecCChh--------------hHHHHHHcCCCeEecc
Q psy16939 101 AHPNLRLFITHGGIS--------------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~--------------t~~eal~~g~P~i~vP 131 (174)
.++|+++--||.. .+.+++..|+|.+...
T Consensus 78 --~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 78 --ENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred --hcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 5688877777732 2446777888877654
No 289
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=43.45 E-value=63 Score=24.00 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=59.3
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee---cCCchhhhcCCCccEEE
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK---WYPQTDILAHPNLRLFI 109 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~---~~p~~~~l~~~~~~~~I 109 (174)
.+++|-.|+.. +..+..++++.++.+.+...++... ..+.+.+-+ |-+-++-|.
T Consensus 3 ~i~IIDyg~GN---------L~Sv~~Aler~G~~~~vs~d~~~i~------~AD~liLPGVGaf~~am~~L~-------- 59 (204)
T COG0118 3 MVAIIDYGSGN---------LRSVKKALERLGAEVVVSRDPEEIL------KADKLILPGVGAFGAAMANLR-------- 59 (204)
T ss_pred EEEEEEcCcch---------HHHHHHHHHHcCCeeEEecCHHHHh------hCCEEEecCCCCHHHHHHHHH--------
Confidence 45677777663 6778899999999888876655433 123333322 222333331
Q ss_pred ecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHH---cCceeE
Q psy16939 110 THGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH---RGYALI 151 (174)
Q Consensus 110 ~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~---~G~g~~ 151 (174)
..|....+.|.+..|+|++.|=. +-|..-....|. .|+|+.
T Consensus 60 ~~gl~~~i~~~~~~~kP~LGICl-GMQlLfe~SeE~~~~~GLg~i 103 (204)
T COG0118 60 ERGLIEAIKEAVESGKPFLGICL-GMQLLFERSEEGGGVKGLGLI 103 (204)
T ss_pred hcchHHHHHHHHhcCCCEEEEeH-hHHhhhhcccccCCCCCccee
Confidence 12566788888889999998854 666666555555 355543
No 290
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=43.39 E-value=1.5e+02 Score=22.78 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=36.5
Q ss_pred hhhHHHHHHcCCC---eEeccccchHHHHHHHHHHcCceeEecCCC----CCHHHHHHHH
Q psy16939 114 ISSLMEASSLGVP---VLGVPFFGDQYRNMVLLRHRGYALIEPIQT----LTKQSFLKNA 166 (174)
Q Consensus 114 ~~t~~eal~~g~P---~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~----~~~~~l~~al 166 (174)
..++-.+...|.| .|..=-.+.+..|...+++.++...+.++. -+.+.+..+.
T Consensus 161 ~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~ 220 (256)
T TIGR00715 161 PQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAE 220 (256)
T ss_pred chhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHH
Confidence 3467778888998 444412345788889999999999987664 2356665554
No 291
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=43.31 E-value=1e+02 Score=26.64 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred cCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEe
Q psy16939 39 FGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFIT 110 (174)
Q Consensus 39 ~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~ 110 (174)
+|+. .....+.+++.|.+.+.+.++-..+.....+...-...++.++. +.-...-....+..++++
T Consensus 1 ~~~~------~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~ 74 (588)
T PRK07525 1 MGKM------KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIG 74 (588)
T ss_pred CCcc------cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEE
Q ss_pred cCC------hhhHHHHHHcCCCeEecc------------ccc-hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 111 HGG------ISSLMEASSLGVPVLGVP------------FFG-DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 111 hgG------~~t~~eal~~g~P~i~vP------------~~~-dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
|.| .+.+.+|...++|+|++. +.. ||..-.+-+.+ ....+...+--.+.+.++++..++
T Consensus 75 t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk--~~~~i~~~~~~~~~i~rA~~~A~~ 152 (588)
T PRK07525 75 QNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTK--YQEEVRDPSRMAEVLNRVFDKAKR 152 (588)
T ss_pred cCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhee--EEEECCCHHHHHHHHHHHHHHHhc
Q ss_pred CC
Q psy16939 172 DP 173 (174)
Q Consensus 172 ~~ 173 (174)
.+
T Consensus 153 ~~ 154 (588)
T PRK07525 153 ES 154 (588)
T ss_pred CC
No 292
>PRK06242 flavodoxin; Provisional
Probab=43.27 E-value=74 Score=21.65 Aligned_cols=56 Identities=9% Similarity=-0.061 Sum_probs=32.2
Q ss_pred cccCCccc-cCChHHHHHHHhcC---C-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 9 VKLCSMCF-IDGLSDLQQRADAA---K-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 9 ~~~~g~~~-~~~~~~~~~~~~~~---~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
+-++.|+. ..+++.+..|++.. . +++++++.++... ......+.+.+...+.+++-
T Consensus 47 ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~-----~~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 47 IGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLPF-----LKYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred EEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCCCc-----chHHHHHHHHHHHCCCEEEE
Confidence 33444443 36777888888643 2 4555554444422 22266777777777776653
No 293
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=43.24 E-value=70 Score=23.06 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=33.2
Q ss_pred ChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 19 GLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
-|+.+.+.+...++|++++..|... ..+..+++.+..+..+.+++....
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~-----~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLD-----DEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccc-----cchHHHHHHHHHHHHCCCEEEccc
Confidence 5678888888887788887776653 134466666666666777776544
No 294
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=43.12 E-value=1.3e+02 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=19.1
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
++++-+|+.. ...+..+++..+..+.+.
T Consensus 2 i~vid~g~gn---------~~~~~~~l~~~g~~v~~~ 29 (199)
T PRK13181 2 IAIIDYGAGN---------LRSVANALKRLGVEAVVS 29 (199)
T ss_pred EEEEeCCCCh---------HHHHHHHHHHCCCcEEEE
Confidence 5677788774 455666777778776654
No 295
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.06 E-value=34 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~vP~ 132 (174)
..+|++|+=||-||+..++. .++|++.|-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 45899999999999998864 5689988864
No 296
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.03 E-value=1.9e+02 Score=23.85 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--C--ccccccCCCCC-EEEeecC-------Cchhh
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--D--PVLNAKTLPDN-VFIQKWY-------PQTDI 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~--~~~~~~~~~~n-v~~~~~~-------p~~~~ 99 (174)
+++++.-.||... -....+++.|.+.++.+-+...+.. + +.-.+ .+..+ ++..-|- .+-.+
T Consensus 7 k~IllgvTGsiaa------~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~-~l~~~~V~~~~~~~~~~~~~~hi~l 79 (399)
T PRK05579 7 KRIVLGVSGGIAA------YKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQ-ALSGNPVSTDLWDPAAEAAMGHIEL 79 (399)
T ss_pred CeEEEEEeCHHHH------HHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHH-HhhCCceEccccccccCCCcchhhc
Confidence 4566666677643 2345566677777776544443311 0 00000 12222 2221121 12222
Q ss_pred hcCCCccEE-EecCChhhHHH-------------HHHcCCCeEeccccc-------hHHHHHHHHHHcCceeEecC----
Q psy16939 100 LAHPNLRLF-ITHGGISSLME-------------ASSLGVPVLGVPFFG-------DQYRNMVLLRHRGYALIEPI---- 154 (174)
Q Consensus 100 l~~~~~~~~-I~hgG~~t~~e-------------al~~g~P~i~vP~~~-------dQ~~na~~l~~~G~g~~l~~---- 154 (174)
. ..+|++ |.-+-+||+.. +++.++|++++|-.. --..|...+.+.|+-++=..
T Consensus 80 ~--~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~l 157 (399)
T PRK05579 80 A--KWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRL 157 (399)
T ss_pred c--cccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccc
Confidence 2 456655 44455554432 355689999999422 24567888888887765220
Q ss_pred --------CCCCHHHHHHHHHHhhc
Q psy16939 155 --------QTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 155 --------~~~~~~~l~~al~~ll~ 171 (174)
+-.+.+++...+.+.+.
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 12467888888877663
No 297
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.84 E-value=71 Score=22.80 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=23.7
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
..+|+++||-.. .+...++..+.++.+.+.
T Consensus 2 ~~vyl~LGSNlg---d~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 2 TRVYLGLGSNLG---DRLKQLRAALAALDALAD 31 (160)
T ss_pred cEEEEEecCCCC---CHHHHHHHHHHHHHhCCC
Confidence 469999999875 355668888888888875
No 298
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=42.79 E-value=97 Score=25.15 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=47.1
Q ss_pred CccEEEecCChhhHHHHHHc-----------------CCCeEeccccchHHHHHHHHHHcCceeE-e--cC-CCCCHHHH
Q psy16939 104 NLRLFITHGGISSLMEASSL-----------------GVPVLGVPFFGDQYRNMVLLRHRGYALI-E--PI-QTLTKQSF 162 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~-----------------g~P~i~vP~~~dQ~~na~~l~~~G~g~~-l--~~-~~~~~~~l 162 (174)
.++-++|.||..+..-|+.+ +.|.++++...| .-..+...-.|+|++ + +. ..++.++|
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH-~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH-YSIEKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc-cHHHHhcceeeeEEEEecCCcchhhhHHHh
Confidence 47889999998888766532 356777766554 666777888899976 3 22 24678999
Q ss_pred HHHHHHhhcC
Q psy16939 163 LKNAQTMLND 172 (174)
Q Consensus 163 ~~al~~ll~~ 172 (174)
+++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9998876543
No 299
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=42.66 E-value=48 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.2
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|.| .+.+|...++|+|++.
T Consensus 72 g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~ 106 (530)
T PRK07092 72 GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITA 106 (530)
T ss_pred CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 5677888888866 7889999999999993
No 300
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=42.12 E-value=1.3e+02 Score=24.35 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
++.+++....+++++|+-++. . ..+++.+.|+..+..+.+.
T Consensus 13 ~l~~~l~~~~~r~livtd~~~-------~-~~~~v~~~L~~~g~~~~~~ 53 (374)
T cd08183 13 ELPALAAELGRRVLLVTGASS-------L-RAAWLIEALRAAGIEVTHV 53 (374)
T ss_pred HHHHHHHHcCCcEEEEECCch-------H-HHHHHHHHHHHcCCeEEEe
Confidence 344444433335555554333 1 5777888888777765443
No 301
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=41.85 E-value=31 Score=26.65 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecC-C-CCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHc---
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDI-T-NDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSL--- 123 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~-~-~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~--- 123 (174)
..+...++.+.+.+.+..+.+.... . ....+ . ..... ...|++|.-||-||+.|++..
T Consensus 17 ~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~--------------~--~~~~~-~~~d~ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 17 DNKPLREVIMLLREEGMEIHVRVTWEKGDAARY--------------V--EEARK-FGVDTVIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEecCcccHHHH--------------H--HHHHh-cCCCEEEEECCCChHHHHHHHHhc
Confidence 3556778888888888765443322 1 11100 0 01111 458999999999999996643
Q ss_pred --CCCeE-eccc
Q psy16939 124 --GVPVL-GVPF 132 (174)
Q Consensus 124 --g~P~i-~vP~ 132 (174)
..|.+ ++|.
T Consensus 80 ~~~~~~lgiiP~ 91 (293)
T TIGR00147 80 LDDIPALGILPL 91 (293)
T ss_pred CCCCCcEEEEcC
Confidence 34444 4785
No 302
>PRK05858 hypothetical protein; Provisional
Probab=41.72 E-value=99 Score=26.39 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|.+.+.+.++-..+.....+.+.-...+++++. |+-...-....+..+++.|.| .+.+++
T Consensus 9 ~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~ 88 (542)
T PRK05858 9 RLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA 88 (542)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH
Q ss_pred HHHcCCCeEec-------------cccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 120 ASSLGVPVLGV-------------PFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 120 al~~g~P~i~v-------------P~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
|-..++|+|++ .+..||..-.+-+.+ ....+...+--.+.+.++++..++.+.
T Consensus 89 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk--~~~~v~~~~~~~~~i~~A~~~A~~~~~ 154 (542)
T PRK05858 89 AQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTK--FAATAQSAENAGRLVDQALQAAVTPHR 154 (542)
T ss_pred HHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhc--eEEEeCCHHHHHHHHHHHHHHHcCCCC
No 303
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=41.64 E-value=1.8e+02 Score=23.06 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+.++.+|+++ +.+.+.+...+.+++........ .+.-..........+++ +.||+++.|
T Consensus 137 ~tvgIvG~G~IG----------~~vA~~l~afG~~V~~~~~~~~~-------~~~~~~~~~~~~l~e~l--~~aDvvv~~ 197 (312)
T PRK15469 137 FTIGILGAGVLG----------SKVAQSLQTWGFPLRCWSRSRKS-------WPGVQSFAGREELSAFL--SQTRVLINL 197 (312)
T ss_pred CEEEEECCCHHH----------HHHHHHHHHCCCEEEEEeCCCCC-------CCCceeecccccHHHHH--hcCCEEEEC
Confidence 566777888874 34566677778876654322111 11101112233456677 789999999
Q ss_pred CChhhHHH
Q psy16939 112 GGISSLME 119 (174)
Q Consensus 112 gG~~t~~e 119 (174)
.-.+.-.+
T Consensus 198 lPlt~~T~ 205 (312)
T PRK15469 198 LPNTPETV 205 (312)
T ss_pred CCCCHHHH
Confidence 87654433
No 304
>PRK07586 hypothetical protein; Validated
Probab=41.56 E-value=99 Score=26.11 Aligned_cols=121 Identities=7% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCC-CCEEEee--------cCCchhhhcCCCccEEEecCChhhHH------
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLP-DNVFIQK--------WYPQTDILAHPNLRLFITHGGISSLM------ 118 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG~~t~~------ 118 (174)
+.+++.|++.+.+.++-..+.....+.+.-.. ++++++. |+-...-....+..+++.|.|-|.+.
T Consensus 5 ~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~ 84 (514)
T PRK07586 5 ESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLH 84 (514)
T ss_pred HHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHH
Q ss_pred HHHHcCCCeEec---------cccchHHHHHHHHHH--cCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 119 EASSLGVPVLGV---------PFFGDQYRNMVLLRH--RGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 119 eal~~g~P~i~v---------P~~~dQ~~na~~l~~--~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
+|.+.++|+|++ .....|..+...+.+ -.....+...+--.+.+.++++..++.+.
T Consensus 85 ~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 151 (514)
T PRK07586 85 NARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPG 151 (514)
T ss_pred HHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCC
No 305
>PLN03139 formate dehydrogenase; Provisional
Probab=41.54 E-value=2e+02 Score=23.65 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=39.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCc-cccccCCCCCEEEeecCCchhhhcCCCccEEEe
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDP-VLNAKTLPDNVFIQKWYPQTDILAHPNLRLFIT 110 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~ 110 (174)
+.+-+|.+|.++ ..+++.+...+.+++. +...... +. ....++.. ..+..+++ +.+|+++.
T Consensus 200 ktVGIVG~G~IG----------~~vA~~L~afG~~V~~-~d~~~~~~~~---~~~~g~~~--~~~l~ell--~~sDvV~l 261 (386)
T PLN03139 200 KTVGTVGAGRIG----------RLLLQRLKPFNCNLLY-HDRLKMDPEL---EKETGAKF--EEDLDAML--PKCDVVVI 261 (386)
T ss_pred CEEEEEeecHHH----------HHHHHHHHHCCCEEEE-ECCCCcchhh---HhhcCcee--cCCHHHHH--hhCCEEEE
Confidence 567788888774 3456666667888765 3322211 10 01112221 22566777 78999999
Q ss_pred cCChhhHH
Q psy16939 111 HGGISSLM 118 (174)
Q Consensus 111 hgG~~t~~ 118 (174)
|.-.+.-.
T Consensus 262 ~lPlt~~T 269 (386)
T PLN03139 262 NTPLTEKT 269 (386)
T ss_pred eCCCCHHH
Confidence 98644333
No 306
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.40 E-value=1e+02 Score=26.51 Aligned_cols=121 Identities=7% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCC-CCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLP-DNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLM 118 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~ 118 (174)
+.+++.|.+.+.+.++-..+.....+...-.. .++.++. |+-...-....+..++++|.| .+.+.
T Consensus 8 ~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~ 87 (574)
T PRK06882 8 EMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIA 87 (574)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHH
Q ss_pred HHHHcCCCeEec---------cccchHHHHHHHHHH--cCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 119 EASSLGVPVLGV---------PFFGDQYRNMVLLRH--RGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 119 eal~~g~P~i~v---------P~~~dQ~~na~~l~~--~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
+|.+.++|+|++ ....-|..+...+.+ -.....+...+.-.+.+.++++..++.+.
T Consensus 88 ~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (574)
T PRK06882 88 TAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRP 154 (574)
T ss_pred HHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCC
No 307
>PRK06756 flavodoxin; Provisional
Probab=41.35 E-value=85 Score=21.44 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=26.8
Q ss_pred CChHHHHHHHhcC---C-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEE
Q psy16939 18 DGLSDLQQRADAA---K-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIF 68 (174)
Q Consensus 18 ~~~~~~~~~~~~~---~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i 68 (174)
..|+.+..|++.. . +...+..+||..............+.+.+...+.+++
T Consensus 64 ~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v 118 (148)
T PRK06756 64 DLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVV 118 (148)
T ss_pred CCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEc
Confidence 4566677776541 2 2333333444322111234567777778877776543
No 308
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=41.27 E-value=1.5e+02 Score=22.12 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI 73 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 73 (174)
.++++|+.|+... -..+.+.|.+.+++++.....
T Consensus 9 ~k~vlItG~s~gI--------G~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 9 GKIIIVTGGSSGI--------GLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CCEEEEeCCCChH--------HHHHHHHHHHCCCEEEEEeCC
Confidence 3788999888754 445666677778887776543
No 309
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=41.13 E-value=1e+02 Score=21.63 Aligned_cols=52 Identities=6% Similarity=-0.077 Sum_probs=28.5
Q ss_pred CChHHHHHHHhc-----CC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 18 DGLSDLQQRADA-----AK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 18 ~~~~~~~~~~~~-----~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
..|+.+.+|++. .. +++.++++|....-...-...+..+.+.|++.+.+++-
T Consensus 59 ~~p~~~~~fl~~l~~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig 116 (167)
T TIGR01752 59 ELQEDWEDFLPTLEELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVG 116 (167)
T ss_pred cCcHHHHHHHHHhhcCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEc
Confidence 566677777653 12 56666666644210001133466777777777776653
No 310
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=41.10 E-value=48 Score=26.58 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=48.4
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhh-CCCcEEEEecCCCCccccccCCCCCEEEeec-CCch
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQ-LKLPIFWKIDITNDPVLNAKTLPDNVFIQKW-YPQT 97 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~-~p~~ 97 (174)
+++.+++.... +++++|+ +... .....+.+.+.+.. .+..+++.-+.+.-+ +.....- ....
T Consensus 12 ~~l~~~~~~~~~~k~livt-d~~v-----~~~~~~~v~~~L~~~~~~~~~~~~~~e~~k---------~~~~v~~~~~~~ 76 (344)
T cd08169 12 ESVESYTTRDLFDQYFFIS-DSGV-----ADLIAHYIAEYLSKILPVHILVIEGGEEYK---------TFETVTRILERA 76 (344)
T ss_pred HHHHHHHHhcCCCeEEEEE-CccH-----HHHHHHHHHHHHHhhcCceEEEeCCCCCCC---------CHHHHHHHHHHH
Confidence 34555555544 4555554 4432 34567778888866 455554432222211 0000000 0000
Q ss_pred hhhcCCCccEEEecCChhhHHHH-------HHcCCCeEecccc
Q psy16939 98 DILAHPNLRLFITHGGISSLMEA-------SSLGVPVLGVPFF 133 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG~~t~~ea-------l~~g~P~i~vP~~ 133 (174)
.-....++|++|.=||.. +.+. ...|+|.+.+|..
T Consensus 77 ~~~~~~r~d~IIaiGGGs-v~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 77 IALGANRRTAIVAVGGGA-TGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHcCCCCCcEEEEECCcH-HHHHHHHHHHHhccCCcEEEecCC
Confidence 100014689999888843 3322 1359999999973
No 311
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.82 E-value=1.4e+02 Score=21.71 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=18.4
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
+++|..|... +..+.+++++.+..+.+.
T Consensus 2 i~iid~g~~n---------~~~v~~~l~~~g~~~~~~ 29 (201)
T PRK13152 2 IALIDYKAGN---------LNSVAKAFEKIGAINFIA 29 (201)
T ss_pred EEEEECCCCc---------HHHHHHHHHHCCCeEEEE
Confidence 4566666653 566778888877765553
No 312
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=40.76 E-value=75 Score=21.35 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCC---c
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYP---Q 96 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p---~ 96 (174)
+++.+.+.+.++|++++..|.... .. .+++.+..++.+.+|+-...... +++ ..|..+-..+... .
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~---~a---~~~l~~lae~~~~Pv~~t~~~kg~i~~----~hp~~~G~~g~~~~~~~ 71 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRS---GA---AEELRELAEKLGIPVATTPMGKGVIPE----DHPLFLGYLGLFGSPAA 71 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHT---TC---HHHHHHHHHHHTSEEEEEGGGTTSSTT----TSTTEEEESCGGSCHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCcChh---hH---HHHHHHHHHHHCCCEEecCccccccCC----CCchhcccCCccCCHHH
Confidence 356677888887888888776633 13 44445555555888866544432 331 3343333333321 2
Q ss_pred hhhhcCCCccEEEecCC
Q psy16939 97 TDILAHPNLRLFITHGG 113 (174)
Q Consensus 97 ~~~l~~~~~~~~I~hgG 113 (174)
.+++ ..+|++|.=|-
T Consensus 72 ~~~l--~~aDlvl~iG~ 86 (137)
T PF00205_consen 72 NEAL--EQADLVLAIGT 86 (137)
T ss_dssp HHHH--HHSSEEEEESS
T ss_pred HHHh--cCCCEEEEECC
Confidence 3556 67999999884
No 313
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=40.70 E-value=55 Score=26.42 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCccEEEecCChhhHHHHHHc---CCCeEeccc--------cchHHHHHHHHH
Q psy16939 103 PNLRLFITHGGISSLMEASSL---GVPVLGVPF--------FGDQYRNMVLLR 144 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~---g~P~i~vP~--------~~dQ~~na~~l~ 144 (174)
..+|+++.-||-||.-+.... .+|++.+|. ++=++.-|.++.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~ 151 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKNYSGVFALSPEDAARLL 151 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeeccccceeccccccChHHHHHHH
Confidence 479999999999998877766 899999996 344555555554
No 314
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=40.39 E-value=73 Score=22.04 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCC---Cc----cccccCCCCCEEE------eecCCchhhhcCCCccEEEecCC--
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITN---DP----VLNAKTLPDNVFI------QKWYPQTDILAHPNLRLFITHGG-- 113 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~---~~----~~~~~~~~~nv~~------~~~~p~~~~l~~~~~~~~I~hgG-- 113 (174)
-.+..++|.++.+..+-.+.+...-.. .. ++.- .-++++.. ...+.-..++ .+||++|-+=|
T Consensus 10 HtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG-~e~~~fw~D~k~a~iNaiRT~~li--~~aDvvVvrFGek 86 (144)
T TIGR03646 10 HTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILG-KQPSNFWRDDAAASINNIRTRKLI--EKADVVIALFGEK 86 (144)
T ss_pred cchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhC-CCCccccccccccchhhHHHHHHH--hhCCEEEEEechH
Confidence 456788888888866665555432211 00 0000 11111111 1123344555 78999999988
Q ss_pred ---hhhHHHH---HHcCCCeEec
Q psy16939 114 ---ISSLMEA---SSLGVPVLGV 130 (174)
Q Consensus 114 ---~~t~~ea---l~~g~P~i~v 130 (174)
+|+.++| .+.|+|.|++
T Consensus 87 YKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 87 YKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHHHHHhhHHHHHHcCCCeEEe
Confidence 6666664 7789999999
No 315
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=40.17 E-value=66 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
+..+|+++||-.. .....++..++.|...+.
T Consensus 7 ~~~v~i~LGSNlg---~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 7 SALAYVGLGANLG---DAAATLRSVLAELAAAPG 37 (163)
T ss_pred CCEEEEEecCchH---hHHHHHHHHHHHHHhCCC
Confidence 6789999999864 356678888888877543
No 316
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.78 E-value=1.4e+02 Score=21.70 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=37.6
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeec--CCc-hhhhc-CCCccEE
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW--YPQ-TDILA-HPNLRLF 108 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~--~p~-~~~l~-~~~~~~~ 108 (174)
+.++|+.|+... -..+.+.|.+.+++++....... . ....++..... .+. ..++. ++..|.+
T Consensus 6 k~~lVtGas~~i--------G~~ia~~l~~~G~~v~~~~r~~~-~-----~~~~~~~~~~~D~~~~~~~~~~~~~~id~l 71 (235)
T PRK06550 6 KTVLITGAASGI--------GLAQARAFLAQGAQVYGVDKQDK-P-----DLSGNFHFLQLDLSDDLEPLFDWVPSVDIL 71 (235)
T ss_pred CEEEEcCCCchH--------HHHHHHHHHHCCCEEEEEeCCcc-c-----ccCCcEEEEECChHHHHHHHHHhhCCCCEE
Confidence 678888777653 44556666677888776554322 1 11223333221 111 22221 2678999
Q ss_pred EecCCh
Q psy16939 109 ITHGGI 114 (174)
Q Consensus 109 I~hgG~ 114 (174)
|+.+|.
T Consensus 72 v~~ag~ 77 (235)
T PRK06550 72 CNTAGI 77 (235)
T ss_pred EECCCC
Confidence 999984
No 317
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=39.42 E-value=1.6e+02 Score=23.43 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHh-hCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEe
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFK-QLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFIT 110 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~ 110 (174)
+.+-+|.+|+++. ++.+.+. ..+.+++..... ..++. ....++ .+.+..+++ +.||+++.
T Consensus 146 ktvGIiG~G~IG~----------~va~~l~~~fgm~V~~~~~~-~~~~~---~~~~~~---~~~~l~ell--~~sDvv~l 206 (323)
T PRK15409 146 KTLGIVGMGRIGM----------ALAQRAHFGFNMPILYNARR-HHKEA---EERFNA---RYCDLDTLL--QESDFVCI 206 (323)
T ss_pred CEEEEEcccHHHH----------HHHHHHHhcCCCEEEEECCC-Cchhh---HHhcCc---EecCHHHHH--HhCCEEEE
Confidence 5667888888843 3455554 567777653322 11100 011122 245778888 78999999
Q ss_pred cCChhhH
Q psy16939 111 HGGISSL 117 (174)
Q Consensus 111 hgG~~t~ 117 (174)
|.-.+.-
T Consensus 207 h~plt~~ 213 (323)
T PRK15409 207 ILPLTDE 213 (323)
T ss_pred eCCCChH
Confidence 9976543
No 318
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=39.38 E-value=1e+02 Score=24.96 Aligned_cols=45 Identities=7% Similarity=-0.084 Sum_probs=26.6
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
+++.+++...+ +++++|+-++. . ....++++.+.|+..+..+.+.
T Consensus 15 ~~l~~~l~~~g~~~~lvvt~~~~-~----~~g~~~~v~~~L~~~g~~~~~~ 60 (374)
T cd08189 15 AQLPAAISQLGVKKVLIVTDKGL-V----KLGLLDKVLEALEGAGIEYAVY 60 (374)
T ss_pred HHHHHHHHhcCCCeEEEEeCcch-h----hcccHHHHHHHHHhcCCeEEEe
Confidence 44556666555 55666654443 2 2235677888888777765543
No 319
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.96 E-value=73 Score=21.47 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhh-CCC-cEEEEecC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQ-LKL-PIFWKIDI 73 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~-~~~-~~i~~~~~ 73 (174)
+.++++++||... -..+.+.++.+.+++ .+. .+-|..-+
T Consensus 1 ~aillv~fGS~~~---~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYP---TAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCH---HHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3689999999965 245678888887753 343 66666543
No 320
>PRK13695 putative NTPase; Provisional
Probab=38.75 E-value=1.2e+02 Score=21.20 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=34.4
Q ss_pred hhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhh
Q psy16939 115 SSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTML 170 (174)
Q Consensus 115 ~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll 170 (174)
..+.+++..|.|++++-....=...+.++..+-=|..+.-...+++++...+.+-+
T Consensus 117 ~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 117 KAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 44557778899999886532212345556654334444444557888888877654
No 321
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.73 E-value=1.5e+02 Score=21.49 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=35.4
Q ss_pred HHc--CCCeEeccccc----h---HHHHHHHHHHcCceeEecC------------CCCCHHHHHHHHHHhhcC
Q psy16939 121 SSL--GVPVLGVPFFG----D---QYRNMVLLRHRGYALIEPI------------QTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 121 l~~--g~P~i~vP~~~----d---Q~~na~~l~~~G~g~~l~~------------~~~~~~~l~~al~~ll~~ 172 (174)
++. ++|++++|... . ...|...+++.|+-+.-.. +-.+.+++.+.+.+.+..
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 445 89999999632 2 3568888888887665322 123678888888877654
No 322
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=38.37 E-value=34 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.631 Sum_probs=25.3
Q ss_pred CCccEEEecCChhhHHHHHHc----CCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASSL----GVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~----g~P~i~vP~ 132 (174)
..+|++|+-||-||+..+... ++|++.++.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 789999999999999998653 679998874
No 323
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=38.28 E-value=1e+02 Score=25.42 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeec-C-Cch---hhhcCCCc
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKW-Y-PQT---DILAHPNL 105 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~-~-p~~---~~l~~~~~ 105 (174)
.+.++|+.||.+. -.++++.+.+.+.+++......+ ...... ....++....+ + +.. +.+ .+.
T Consensus 178 gK~VLITGASgGI--------G~aLA~~La~~G~~Vi~l~r~~~~l~~~~~-~~~~~v~~v~~Dvsd~~~v~~~l--~~I 246 (406)
T PRK07424 178 GKTVAVTGASGTL--------GQALLKELHQQGAKVVALTSNSDKITLEIN-GEDLPVKTLHWQVGQEAALAELL--EKV 246 (406)
T ss_pred CCEEEEeCCCCHH--------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCeEEEEeeCCCHHHHHHHh--CCC
Confidence 3688899888754 45566666777888776654322 111000 11112333322 2 222 234 679
Q ss_pred cEEEecCChh
Q psy16939 106 RLFITHGGIS 115 (174)
Q Consensus 106 ~~~I~hgG~~ 115 (174)
|++|+++|.+
T Consensus 247 DiLInnAGi~ 256 (406)
T PRK07424 247 DILIINHGIN 256 (406)
T ss_pred CEEEECCCcC
Confidence 9999998864
No 324
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=38.14 E-value=1.2e+02 Score=25.94 Aligned_cols=119 Identities=6% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCC-CCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTL-PDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLM 118 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~ 118 (174)
+.+++.|.+.+.+.++...+.....+...-. ..++.++. |.=...-....+..++++|.| .+.++
T Consensus 5 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~ 84 (558)
T TIGR00118 5 EAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIA 84 (558)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH
Q ss_pred HHHHcCCCeEec-------------cccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 119 EASSLGVPVLGV-------------PFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 119 eal~~g~P~i~v-------------P~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
+|...++|+|++ .+..||..-.+-+.+ ....+..-+--.+.+.++++..++.+.
T Consensus 85 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk--~~~~v~~~~~~~~~v~~A~~~A~~~~~ 151 (558)
T TIGR00118 85 TAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITK--HSFQVKSAEDIPRIIKEAFHIATTGRP 151 (558)
T ss_pred HHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccc--eeEEeCCHHHHHHHHHHHHHHHhcCCC
No 325
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=37.83 E-value=36 Score=24.91 Aligned_cols=35 Identities=6% Similarity=0.198 Sum_probs=22.8
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDITN 75 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~~ 75 (174)
|++-.|+... ...+.+....++.+. +++++.|.-.
T Consensus 76 vllVtG~VT~------~m~~~l~~~yeqmp~pk~VIAvGsCA 111 (186)
T PRK14814 76 MILVLGTITY------KMAPVLRQIYDQMAEPKFVISVGACA 111 (186)
T ss_pred EEEEeccCch------hhHHHHHHHHHhcCCCCeEEEecccc
Confidence 7777788753 345556666666655 7888887643
No 326
>PF14350 Beta_protein: Beta protein
Probab=37.80 E-value=46 Score=26.57 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=27.1
Q ss_pred CeEeccccchHHHHHHHHH---HcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 126 PVLGVPFFGDQYRNMVLLR---HRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 126 P~i~vP~~~dQ~~na~~l~---~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
|++.+-...++......+. ..|+++.+..+++..+++...+.++++
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 6666644444344344444 457777777776666666666666654
No 327
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.58 E-value=2.6e+02 Score=23.94 Aligned_cols=123 Identities=10% Similarity=0.078 Sum_probs=63.8
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCCchhhhcC---CCccEE
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTDILAH---PNLRLF 108 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~~l~~---~~~~~~ 108 (174)
.+|++..|.. -+.+.+.|.+.+.+++..-.+++ .++. + +...++..-+ ..+.+.|.. .++|.+
T Consensus 419 hiiI~G~G~~----------G~~la~~L~~~g~~vvvId~d~~~~~~~-~-~~g~~~i~GD-~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 419 HALLVGYGRV----------GSLLGEKLLAAGIPLVVIETSRTRVDEL-R-ERGIRAVLGN-AANEEIMQLAHLDCARWL 485 (558)
T ss_pred CEEEECCChH----------HHHHHHHHHHCCCCEEEEECCHHHHHHH-H-HCCCeEEEcC-CCCHHHHHhcCccccCEE
Confidence 5566666666 34578888888888777654432 1211 1 2223333333 334444422 567755
Q ss_pred E-ecCC--hh-hHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 109 I-THGG--IS-SLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 109 I-~hgG--~~-t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
| +-+. .+ .+..++..--|-.-+=-..+...+...+++.|+-.++.++ +.+.+.+.+.+..
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~----~~~a~~i~~~l~~ 549 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGE----REIARTMLELLET 549 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChH----HHHHHHHHHHhcC
Confidence 4 3233 12 1333333322321111123445788888999999998643 4455555555444
No 328
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=37.46 E-value=60 Score=23.46 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHHHHHcCCCeEeccccc------------hHH---------HHHHHHHHc-CceeEecCCCCCHHHHHHH
Q psy16939 117 LMEASSLGVPVLGVPFFG------------DQY---------RNMVLLRHR-GYALIEPIQTLTKQSFLKN 165 (174)
Q Consensus 117 ~~eal~~g~P~i~vP~~~------------dQ~---------~na~~l~~~-G~g~~l~~~~~~~~~l~~a 165 (174)
+.+++..++|.+++|... .++ .|-+++++. |+-+.- ++++|.++
T Consensus 108 ~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~~~~gv~v~~-----~~~~~~~~ 173 (174)
T TIGR02699 108 VIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLAQMEGIEILT-----KPEDIYKI 173 (174)
T ss_pred HHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHhhCCCeEEEC-----CHHHHHhh
Confidence 445566799999999732 222 566677665 555432 46666654
No 329
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=37.38 E-value=1.1e+02 Score=25.10 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=46.5
Q ss_pred CCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCcee-EecCCCCCHHHHHHHHHHhhc
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYAL-IEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~-~l~~~~~~~~~l~~al~~ll~ 171 (174)
..++++|. .=+.++.-|++.|+|.+.+ +-|.-+...+++.|+-- .++...++.+.+.+.+.+.+.
T Consensus 284 ~~~dl~Vg-~R~HsaI~al~~g~p~i~i---~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 284 AACDLIVG-MRLHSAIMALAFGVPAIAI---AYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred ccCceEEe-ehhHHHHHHHhcCCCeEEE---eecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHh
Confidence 66888775 3466788889999999999 44566667777777663 344556777877777766554
No 330
>PRK07524 hypothetical protein; Provisional
Probab=37.08 E-value=1.6e+02 Score=25.02 Aligned_cols=119 Identities=7% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|++.+.+.+.-..+.....+...-...+++++. ++-...-....+..+++.|.| .+.+.+
T Consensus 6 ~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~ 85 (535)
T PRK07524 6 EALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ 85 (535)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH
Q ss_pred HHHcCCCeEec--------------cccc--hHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCCC
Q psy16939 120 ASSLGVPVLGV--------------PFFG--DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174 (174)
Q Consensus 120 al~~g~P~i~v--------------P~~~--dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 174 (174)
|...++|+|++ .++. ||....+-+.+ ....+...+--.+.+.++++..++.+.
T Consensus 86 A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk--~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (535)
T PRK07524 86 AYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAA--FSHTLMSAEDLPEVLARAFAVFDSARP 154 (535)
T ss_pred HHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhce--eEEEeCCHHHHHHHHHHHHHHHhcCCC
No 331
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=36.65 E-value=2e+02 Score=22.33 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=53.7
Q ss_pred hhcCCCccEEEecCC---hhhHHHHHHcCCCeEec----ccc----------------chH-HHHHHHHHHcCceeEecC
Q psy16939 99 ILAHPNLRLFITHGG---ISSLMEASSLGVPVLGV----PFF----------------GDQ-YRNMVLLRHRGYALIEPI 154 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG---~~t~~eal~~g~P~i~v----P~~----------------~dQ-~~na~~l~~~G~g~~l~~ 154 (174)
++....++++=.-|| ..++......|+|++.. |+. .+| ...|+.++++|+-..+-
T Consensus 102 ~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivl- 180 (268)
T COG0413 102 LMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVL- 180 (268)
T ss_pred HHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEE-
Confidence 343356999999999 88899999999999764 651 123 34788999999876653
Q ss_pred CCCCHHHHHHHHHHhhcC
Q psy16939 155 QTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 155 ~~~~~~~l~~al~~ll~~ 172 (174)
+.-++++.+.|.+-++-
T Consensus 181 -E~Vp~~lA~~IT~~lsi 197 (268)
T COG0413 181 -ECVPAELAKEITEKLSI 197 (268)
T ss_pred -eccHHHHHHHHHhcCCC
Confidence 34788999888876653
No 332
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=36.65 E-value=16 Score=25.01 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=7.1
Q ss_pred cEEEecCCh
Q psy16939 106 RLFITHGGI 114 (174)
Q Consensus 106 ~~~I~hgG~ 114 (174)
.=||+|||+
T Consensus 115 krViSHGGY 123 (127)
T PF12496_consen 115 KRVISHGGY 123 (127)
T ss_pred eeeeccCCc
Confidence 347999997
No 333
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=36.64 E-value=1.1e+02 Score=22.53 Aligned_cols=89 Identities=9% Similarity=-0.116 Sum_probs=45.8
Q ss_pred cCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEE
Q psy16939 29 AAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLF 108 (174)
Q Consensus 29 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~ 108 (174)
..++++++|..|..+ ...+..|...+..+.+... ...+++........+.+.........+ ..+|++
T Consensus 8 l~~k~vLVIGgG~va----------~~ka~~Ll~~ga~V~VIs~-~~~~~l~~l~~~~~i~~~~~~~~~~~l--~~adlV 74 (202)
T PRK06718 8 LSNKRVVIVGGGKVA----------GRRAITLLKYGAHIVVISP-ELTENLVKLVEEGKIRWKQKEFEPSDI--VDAFLV 74 (202)
T ss_pred cCCCEEEEECCCHHH----------HHHHHHHHHCCCeEEEEcC-CCCHHHHHHHhCCCEEEEecCCChhhc--CCceEE
Confidence 334566666666553 2335555566776665543 221111110011335544433333445 679999
Q ss_pred EecCChhhHHHHHH----cCCCeEec
Q psy16939 109 ITHGGISSLMEASS----LGVPVLGV 130 (174)
Q Consensus 109 I~hgG~~t~~eal~----~g~P~i~v 130 (174)
|.--+...+.+.++ .++++-.+
T Consensus 75 iaaT~d~elN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPENALFNVI 100 (202)
T ss_pred EEcCCCHHHHHHHHHHHHhCCcEEEC
Confidence 99877666666554 45555443
No 334
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.27 E-value=76 Score=23.23 Aligned_cols=74 Identities=11% Similarity=-0.090 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCCchh---hhc-CCCccE
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTD---ILA-HPNLRL 107 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~---~l~-~~~~~~ 107 (174)
+.++|+.|+... -..++..+.+.+++++....... ..++.. .....+...+..+... .+. ....|+
T Consensus 10 ~~~lItGa~g~i--------G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 10 KSVLVTGASSGI--------GRACAVALAQRGARVVAAARNAAALDRLAG-ETGCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CEEEEeCCcchH--------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HhCCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 677887776543 34455566667888776654321 111111 1223344444443322 121 145899
Q ss_pred EEecCChh
Q psy16939 108 FITHGGIS 115 (174)
Q Consensus 108 ~I~hgG~~ 115 (174)
+|+.+|..
T Consensus 81 vi~~ag~~ 88 (245)
T PRK07060 81 LVNCAGIA 88 (245)
T ss_pred EEECCCCC
Confidence 99999864
No 335
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=36.08 E-value=2.2e+02 Score=24.42 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=23.6
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 70 g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 5677888888854 5788999999999993
No 336
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=36.02 E-value=58 Score=20.90 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee-cCCchhhhcCCCccEEE
Q psy16939 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK-WYPQTDILAHPNLRLFI 109 (174)
Q Consensus 31 ~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~-~~p~~~~l~~~~~~~~I 109 (174)
++++++|..|... ..-++.|.+.+.++.+..... + ...+.+.+.. .++ ..+ ..+++++
T Consensus 7 ~~~vlVvGgG~va----------~~k~~~Ll~~gA~v~vis~~~--~-----~~~~~i~~~~~~~~--~~l--~~~~lV~ 65 (103)
T PF13241_consen 7 GKRVLVVGGGPVA----------ARKARLLLEAGAKVTVISPEI--E-----FSEGLIQLIRREFE--EDL--DGADLVF 65 (103)
T ss_dssp T-EEEEEEESHHH----------HHHHHHHCCCTBEEEEEESSE--H-----HHHTSCEEEESS-G--GGC--TTESEEE
T ss_pred CCEEEEECCCHHH----------HHHHHHHHhCCCEEEEECCch--h-----hhhhHHHHHhhhHH--HHH--hhheEEE
Confidence 3566666665553 234566667788888876653 1 0112222222 122 335 6799999
Q ss_pred ecCChhhHHHHHH
Q psy16939 110 THGGISSLMEASS 122 (174)
Q Consensus 110 ~hgG~~t~~eal~ 122 (174)
...+-..+.+.++
T Consensus 66 ~at~d~~~n~~i~ 78 (103)
T PF13241_consen 66 AATDDPELNEAIY 78 (103)
T ss_dssp E-SS-HHHHHHHH
T ss_pred ecCCCHHHHHHHH
Confidence 9998776666554
No 337
>KOG1205|consensus
Probab=35.87 E-value=1.9e+02 Score=22.69 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC-CCCcccc---ccCCCCC-EEEeec-CCch-hh-----
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI-TNDPVLN---AKTLPDN-VFIQKW-YPQT-DI----- 99 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~-~~~~~~~---~~~~~~n-v~~~~~-~p~~-~~----- 99 (174)
.++|+||.-|.+. -++++..+...|..++.+.+. ++++++. ++..+.+ +++... +.+. +.
T Consensus 12 ~kvVvITGASsGI--------G~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~ 83 (282)
T KOG1205|consen 12 GKVVLITGASSGI--------GEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVE 83 (282)
T ss_pred CCEEEEeCCCcHH--------HHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHH
Confidence 5788998877764 566777788889876666654 3332220 0123333 555543 2211 11
Q ss_pred ---hcCCCccEEEecCChhh
Q psy16939 100 ---LAHPNLRLFITHGGISS 116 (174)
Q Consensus 100 ---l~~~~~~~~I~hgG~~t 116 (174)
-.....|..|+++|.+.
T Consensus 84 ~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 84 WAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHHhcCCCCEEEecCcccc
Confidence 12388999999999864
No 338
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=35.85 E-value=2e+02 Score=24.34 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=49.7
Q ss_pred hhhc-CCCccEEEecCCh--------------hhHHHHHHcCCCeEeccc-----cchHHHHHHHHH-HcCce-eEecCC
Q psy16939 98 DILA-HPNLRLFITHGGI--------------SSLMEASSLGVPVLGVPF-----FGDQYRNMVLLR-HRGYA-LIEPIQ 155 (174)
Q Consensus 98 ~~l~-~~~~~~~I~hgG~--------------~t~~eal~~g~P~i~vP~-----~~dQ~~na~~l~-~~G~g-~~l~~~ 155 (174)
.++. |....++|+-.|. .++.|.-..|+|.+++=. ..+....+..++ +.++- +.++-.
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHH
Confidence 3444 7778888885542 356677788999999833 223333334453 45765 456667
Q ss_pred CCCHHHHHHHHHHhhc
Q psy16939 156 TLTKQSFLKNAQTMLN 171 (174)
Q Consensus 156 ~~~~~~l~~al~~ll~ 171 (174)
+++.+++...++++|-
T Consensus 219 ~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 219 SMRESDILSVLEEVLY 234 (492)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 8899999999999874
No 339
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.81 E-value=2.3e+02 Score=22.65 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCEEEeecCCchh---hhcCCCccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 85 PDNVFIQKWYPQTD---ILAHPNLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 85 ~~nv~~~~~~p~~~---~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
+-.+...+|+||++ +| -.||+-+-+|- .|..-|..+|+|.+=.
T Consensus 237 ~lrvvklPFvpqddyd~LL--~lcD~n~VRGE-DSFVRAq~agkPflWH 282 (370)
T COG4394 237 KLRVVKLPFVPQDDYDELL--WLCDFNLVRGE-DSFVRAQLAGKPFLWH 282 (370)
T ss_pred ceEEEEecCCcHhHHHHHH--Hhcccceeecc-hHHHHHHHcCCCcEEE
Confidence 45678888998764 66 46999999987 5888899999999855
No 340
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.77 E-value=1.5e+02 Score=20.58 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--cCCch---hhhcCCCccEEEecCC--------hhhHHH
Q psy16939 53 KLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--WYPQT---DILAHPNLRLFITHGG--------ISSLME 119 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--~~p~~---~~l~~~~~~~~I~hgG--------~~t~~e 119 (174)
-..+++.|.+.++++...++...... . ..++.+.. +.+.. ..+ ..+|.+|+-.| ...+.+
T Consensus 11 G~~l~~~L~~~~~~V~~~~R~~~~~~----~-~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~~~~~~~~~~~~ 83 (183)
T PF13460_consen 11 GRALAKQLLRRGHEVTALVRSPSKAE----D-SPGVEIIQGDLFDPDSVKAAL--KGADAVIHAAGPPPKDVDAAKNIIE 83 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEESSGGGHH----H-CTTEEEEESCTTCHHHHHHHH--TTSSEEEECCHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCchhcc----c-ccccccceeeehhhhhhhhhh--hhcchhhhhhhhhcccccccccccc
Confidence 56677888888888888777644221 1 44555554 44432 344 57999999998 455556
Q ss_pred HH-HcCCCeEec
Q psy16939 120 AS-SLGVPVLGV 130 (174)
Q Consensus 120 al-~~g~P~i~v 130 (174)
++ .+|++-+++
T Consensus 84 a~~~~~~~~~v~ 95 (183)
T PF13460_consen 84 AAKKAGVKRVVY 95 (183)
T ss_dssp HHHHTTSSEEEE
T ss_pred ccccccccccee
Confidence 54 457776665
No 341
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=35.47 E-value=2.3e+02 Score=22.62 Aligned_cols=101 Identities=8% Similarity=0.033 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+-+-++.+|.++ +++.+.++..+.+++..-.....+ ...-......-...++| ++||+++.|
T Consensus 143 kTvGIiG~G~IG----------~~va~~l~afgm~v~~~d~~~~~~------~~~~~~~~~~~~Ld~lL--~~sDiv~lh 204 (324)
T COG0111 143 KTVGIIGLGRIG----------RAVAKRLKAFGMKVIGYDPYSPRE------RAGVDGVVGVDSLDELL--AEADILTLH 204 (324)
T ss_pred CEEEEECCCHHH----------HHHHHHHHhCCCeEEEECCCCchh------hhccccceecccHHHHH--hhCCEEEEc
Confidence 455667777664 456777778898877644311111 11111233334577888 789999998
Q ss_pred CChhhHHHHHHcCCCeEeccccc--hHHHHHHHHHHcCce-eEecCC---CCCHHHHHHHHHH
Q psy16939 112 GGISSLMEASSLGVPVLGVPFFG--DQYRNMVLLRHRGYA-LIEPIQ---TLTKQSFLKNAQT 168 (174)
Q Consensus 112 gG~~t~~eal~~g~P~i~vP~~~--dQ~~na~~l~~~G~g-~~l~~~---~~~~~~l~~al~~ 168 (174)
- |... ....|+..+.+..-| +.+... -...+.|.+++++
T Consensus 205 ~------------------PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 205 L------------------PLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred C------------------CCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc
Confidence 7 6544 345677888776333 444322 2356677777764
No 342
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=35.42 E-value=1.7e+02 Score=23.39 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=42.6
Q ss_pred CccccCChHHHHHHHhcC----CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC
Q psy16939 13 SMCFIDGLSDLQQRADAA----KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN 75 (174)
Q Consensus 13 g~~~~~~~~~~~~~~~~~----~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~ 75 (174)
+|-+.-.+.++.+|++.. .+--++|-.||... .++.+.+.++++.+.+.+.+|++-+.++.
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~--g~~~d~y~~li~~~~~~g~~vilD~Sg~~ 170 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPP--GVPPDAYAELIRILRQQGAKVILDTSGEA 170 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCC--CCCHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 333344456777776643 22345666777765 37899999999999999999888766644
No 343
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=35.16 E-value=33 Score=24.00 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=22.6
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDIT 74 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~ 74 (174)
|++-.|+.. .+..+.+.+..++.+. +++++.|.-
T Consensus 60 vllVtG~vt------~~~~~~l~~~~e~~p~pk~VIA~GsC 94 (145)
T TIGR01957 60 VMIVAGTVT------KKMAPALRRLYDQMPEPKWVISMGAC 94 (145)
T ss_pred EEEEecCCc------HHHHHHHHHHHHhccCCceEEEecce
Confidence 666677774 3356666666666654 788887763
No 344
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=34.95 E-value=1.7e+02 Score=21.44 Aligned_cols=30 Identities=33% Similarity=0.322 Sum_probs=23.9
Q ss_pred CccEEEecCC----------------hhhHHHHHHcCCCeEecccc
Q psy16939 104 NLRLFITHGG----------------ISSLMEASSLGVPVLGVPFF 133 (174)
Q Consensus 104 ~~~~~I~hgG----------------~~t~~eal~~g~P~i~vP~~ 133 (174)
++|.+|-.|| ......+...++|+++++..
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 4677777777 66777888999999999763
No 345
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=34.85 E-value=1.5e+02 Score=20.35 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=5.4
Q ss_pred CeEEEEcCCC
Q psy16939 33 GFVYMSFGSV 42 (174)
Q Consensus 33 ~~v~vs~Gs~ 42 (174)
.+|++.+|+-
T Consensus 66 d~v~i~~G~N 75 (177)
T cd01822 66 DLVILELGGN 75 (177)
T ss_pred CEEEEeccCc
Confidence 4555555554
No 346
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.12 E-value=1.6e+02 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCccEEEecCChhh------HHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGISS------LMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~t------~~eal~~g~P~i~vP 131 (174)
.+..++++|.|-|. +.+|.+.++|+|++.
T Consensus 66 g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 55778888887554 679999999999994
No 347
>PRK13243 glyoxylate reductase; Reviewed
Probab=34.02 E-value=1.5e+02 Score=23.60 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+.++.+|.++. .+.+.+...+.+++....... ... .....+ .+.+..+++ +.+|+++.|
T Consensus 151 ktvgIiG~G~IG~----------~vA~~l~~~G~~V~~~d~~~~-~~~---~~~~~~---~~~~l~ell--~~aDiV~l~ 211 (333)
T PRK13243 151 KTIGIIGFGRIGQ----------AVARRAKGFGMRILYYSRTRK-PEA---EKELGA---EYRPLEELL--RESDFVSLH 211 (333)
T ss_pred CEEEEECcCHHHH----------HHHHHHHHCCCEEEEECCCCC-hhh---HHHcCC---EecCHHHHH--hhCCEEEEe
Confidence 6778888888743 456666777887654332211 110 001111 345667778 789999999
Q ss_pred CChhh
Q psy16939 112 GGISS 116 (174)
Q Consensus 112 gG~~t 116 (174)
.-.+.
T Consensus 212 lP~t~ 216 (333)
T PRK13243 212 VPLTK 216 (333)
T ss_pred CCCCh
Confidence 86543
No 348
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=33.54 E-value=2.7e+02 Score=22.84 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=36.2
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-+|.+|.++. .+.+.+...|.+++..-. .... . ... ..+.+..+++ ++||+++.|
T Consensus 117 ktvGIIG~G~IG~----------~vA~~l~a~G~~V~~~dp-~~~~-----~-~~~---~~~~~L~ell--~~sDiI~lh 174 (378)
T PRK15438 117 RTVGIVGVGNVGR----------RLQARLEALGIKTLLCDP-PRAD-----R-GDE---GDFRSLDELV--QEADILTFH 174 (378)
T ss_pred CEEEEECcCHHHH----------HHHHHHHHCCCEEEEECC-cccc-----c-ccc---cccCCHHHHH--hhCCEEEEe
Confidence 5666777777743 455566667777765432 1111 1 111 2356778888 779999977
Q ss_pred CCh
Q psy16939 112 GGI 114 (174)
Q Consensus 112 gG~ 114 (174)
.-.
T Consensus 175 ~PL 177 (378)
T PRK15438 175 TPL 177 (378)
T ss_pred CCC
Confidence 753
No 349
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=33.47 E-value=2.1e+02 Score=23.01 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=50.1
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE-ecCCCCccccccCCCCCEEEeecCCchh
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK-IDITNDPVLNAKTLPDNVFIQKWYPQTD 98 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~-~~~~~~~~~~~~~~~~nv~~~~~~p~~~ 98 (174)
+++.+++.... +++++|+ +... .....+++.+.|...+..+.+. ....+.. + ++.... .-.+
T Consensus 20 ~~l~~~l~~~~~~~~livt-d~~~-----~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~-------~-~~~~v~--~~~~ 83 (358)
T PRK00002 20 SELGELLAPLKGKKVAIVT-DETV-----APLYLEKLRASLEAAGFEVDVVVLPDGEQY-------K-SLETLE--KIYD 83 (358)
T ss_pred HHHHHHHHhcCCCeEEEEE-CCch-----HHHHHHHHHHHHHhcCCceEEEEeCCCCCC-------C-CHHHHH--HHHH
Confidence 34555555433 4566666 4432 2357888888888777654432 2221111 0 000000 0011
Q ss_pred hh-cC--CCccEEEecCChhhHHHH-------HHcCCCeEeccccc
Q psy16939 99 IL-AH--PNLRLFITHGGISSLMEA-------SSLGVPVLGVPFFG 134 (174)
Q Consensus 99 ~l-~~--~~~~~~I~hgG~~t~~ea-------l~~g~P~i~vP~~~ 134 (174)
.+ .+ .+.|++|.=||. ++.++ ...|+|.+.||...
T Consensus 84 ~~~~~~~~r~d~IIavGGG-sv~D~aK~iA~~~~~gip~i~IPTT~ 128 (358)
T PRK00002 84 ALLEAGLDRSDTLIALGGG-VIGDLAGFAAATYMRGIRFIQVPTTL 128 (358)
T ss_pred HHHHcCCCCCCEEEEEcCc-HHHHHHHHHHHHhcCCCCEEEcCchh
Confidence 11 11 245999998884 44333 24489999999853
No 350
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=33.34 E-value=2.1e+02 Score=21.49 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=9.3
Q ss_pred CCccEEEecCCh
Q psy16939 103 PNLRLFITHGGI 114 (174)
Q Consensus 103 ~~~~~~I~hgG~ 114 (174)
..+|.+||-+|.
T Consensus 56 ~~~D~Vvh~a~~ 67 (292)
T TIGR01777 56 EGADAVINLAGE 67 (292)
T ss_pred CCCCEEEECCCC
Confidence 568999887764
No 351
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=33.28 E-value=1.1e+02 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCccEEEecCChhhHHHH-----HHcCCCeEeccccc
Q psy16939 103 PNLRLFITHGGISSLMEA-----SSLGVPVLGVPFFG 134 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~~~ 134 (174)
..+|.+|.=||. |+++. ...++|++.||...
T Consensus 76 ~~~d~IIaiGGG-s~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 76 AGADGIVAIGGG-STIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHhcCCEEEEcCCc
Confidence 578999998884 55553 33489999999753
No 352
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.95 E-value=97 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=25.5
Q ss_pred HHHHcCCCeEeccc-cc---hHHHHHHHHHHcCceeE
Q psy16939 119 EASSLGVPVLGVPF-FG---DQYRNMVLLRHRGYALI 151 (174)
Q Consensus 119 eal~~g~P~i~vP~-~~---dQ~~na~~l~~~G~g~~ 151 (174)
+++..++|++++|. .. =...|...+.+.|+-+.
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 46789999999996 22 23678888988888765
No 353
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.86 E-value=2.8e+02 Score=22.82 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=32.8
Q ss_pred HHcCCCeEeccccch-------HHHHHHHHHHcCceeEecC------------CCCCHHHHHHHHHHhhc
Q psy16939 121 SSLGVPVLGVPFFGD-------QYRNMVLLRHRGYALIEPI------------QTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 121 l~~g~P~i~vP~~~d-------Q~~na~~l~~~G~g~~l~~------------~~~~~~~l~~al~~ll~ 171 (174)
+++-+|++++|...+ ...|...+.+.|+-++=.. .-.+.+++...+.+.+.
T Consensus 109 ~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 109 LAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFS 178 (390)
T ss_pred HHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHh
Confidence 334499999998433 3457788888876654221 12367888777776653
No 354
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=32.77 E-value=2.4e+02 Score=22.56 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE-ecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK-IDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~-~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
++.+.+....+++++|+-++.. +...+++.+.|+..+..+.+. ..++... ++ -....+.+
T Consensus 13 ~l~~~~~~~g~~~liv~~~~~~------~~~~~~v~~~l~~~~i~~~~~~~~~~p~~--------~~-----v~~~~~~~ 73 (349)
T cd08550 13 EIAAILSTFGSKVAVVGGKTVL------KKSRPRFEAALAKSIIVVDVIVFGGECST--------EE-----VVKALCGA 73 (349)
T ss_pred HHHHHHHHcCCeEEEEEChHHH------HHHHHHHHHHHHhcCCeeEEEEcCCCCCH--------HH-----HHHHHHHH
Confidence 3444444433455556544432 345678888887766533222 2221110 00 00011222
Q ss_pred cCCCccEEEecCChhhHHHH-----HHcCCCeEeccc
Q psy16939 101 AHPNLRLFITHGGISSLMEA-----SSLGVPVLGVPF 132 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~ 132 (174)
...++|++|.=||. ++++. ...++|++.||.
T Consensus 74 ~~~~~d~IIavGGG-s~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 74 EEQEADVIIGVGGG-KTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred HhcCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEeCC
Confidence 22578999998884 55443 335999999996
No 355
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=32.76 E-value=2e+02 Score=21.13 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=54.8
Q ss_pred ChHHHHHHHhcC--C-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-CCcEEEEecCCCCccccccCCCCCEEEeecC
Q psy16939 19 GLSDLQQRADAA--K-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-KLPIFWKIDITNDPVLNAKTLPDNVFIQKWY 94 (174)
Q Consensus 19 ~~~~~~~~~~~~--~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~ 94 (174)
..+.+.+++... + .+++||...|.. ..+....+.+++... +..+....... .+
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~-----~~~~~~~~~~a~~~l~G~~~~~~~~~~-~~----------------- 72 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGD-----RDEYTARFYAAFESLRGVEVSHLHLFD-TE----------------- 72 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCC-----HHHHHHHHHHHHhhccCcEEEEEeccC-cc-----------------
Confidence 455677777665 2 578888887772 567888889999888 77554332111 11
Q ss_pred CchhhhcCCCccEEEecCC--------------hhhHHHHHHcCCCeEecc
Q psy16939 95 PQTDILAHPNLRLFITHGG--------------ISSLMEASSLGVPVLGVP 131 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~hgG--------------~~t~~eal~~g~P~i~vP 131 (174)
...+.+ .++|+++--|| ...+.++...|+|++.+-
T Consensus 73 ~~~~~l--~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 73 DPLDAL--LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred cHHHHH--hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 112334 56888888777 222344555688988775
No 356
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=32.73 E-value=1.6e+02 Score=25.21 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCcccccc-CCCCCEEEeecCC-chhh-------hcCCCccEEEecCChh------
Q psy16939 51 ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAK-TLPDNVFIQKWYP-QTDI-------LAHPNLRLFITHGGIS------ 115 (174)
Q Consensus 51 ~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~nv~~~~~~p-~~~~-------l~~~~~~~~I~hgG~~------ 115 (174)
...+.+++.|.+.+.+.+.-..+.....+... ....+++++.-.. +... ....+..++++|.|-|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~ 93 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVT 93 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHH
Confidence 45778888888888877776665432221110 1112344443211 1111 1124567788887754
Q ss_pred hHHHHHHcCCCeEecc
Q psy16939 116 SLMEASSLGVPVLGVP 131 (174)
Q Consensus 116 t~~eal~~g~P~i~vP 131 (174)
.+.+|...++|+|++.
T Consensus 94 gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 94 AIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 6889999999999994
No 357
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.47 E-value=2e+02 Score=20.92 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC-----CCccEEEecCC
Q psy16939 51 ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH-----PNLRLFITHGG 113 (174)
Q Consensus 51 ~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~-----~~~~~~I~hgG 113 (174)
.+-..+++.+...|..|....++..++ .|.++.........+++.. +++|++|+-+-
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~~~~------~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAA 91 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPSSLP------PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAA 91 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccc------ccccceEEEecchhhhhhhhccccCcceeEEEecc
Confidence 457788888889999999999875433 3567777776543332211 66788887663
No 358
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=32.25 E-value=1.4e+02 Score=19.20 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=21.1
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
.++++.+.. .++.+..+++.+.+.|+++.-
T Consensus 2 ~vl~s~~~~------~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 2 TVFISVADR------DKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred eEEEEEEcC------cHhHHHHHHHHHHHCCCEEEE
Confidence 366777654 355677888888888988653
No 359
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=31.96 E-value=31 Score=25.82 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=19.0
Q ss_pred CccEEEecCChhhHHHHHHcCCC
Q psy16939 104 NLRLFITHGGISSLMEASSLGVP 126 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P 126 (174)
..-++|+|||...+.-+...|.|
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~ 197 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENIS 197 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCC
Confidence 34589999999888888888866
No 360
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=31.87 E-value=2.2e+02 Score=21.99 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=41.0
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHG 112 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hg 112 (174)
.++++.+|++.. ....+...|.+.+.++....+...... +...+....+-++|++.
T Consensus 132 rI~~~G~g~S~~-------vA~~~~~~l~~ig~~~~~~~d~~~~~~-----------------~~~~~~~~Dv~i~iS~s 187 (281)
T COG1737 132 RIYFFGLGSSGL-------VASDLAYKLMRIGLNVVALSDTHGQLM-----------------QLALLTPGDVVIAISFS 187 (281)
T ss_pred eEEEEEechhHH-------HHHHHHHHHHHcCCceeEecchHHHHH-----------------HHHhCCCCCEEEEEeCC
Confidence 667777666643 466667777777777666554332210 01111112244455666
Q ss_pred Chh-----hHHHHHHcCCCeEecc
Q psy16939 113 GIS-----SLMEASSLGVPVLGVP 131 (174)
Q Consensus 113 G~~-----t~~eal~~g~P~i~vP 131 (174)
|.. .+..+-..|.|+|.+-
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT 211 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAIT 211 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEc
Confidence 643 3445567788888874
No 361
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.79 E-value=66 Score=25.41 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=25.6
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~vP~ 132 (174)
-..|.+|.=||.+|...|.. .++|++.+|-
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPk 123 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPG 123 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecc
Confidence 57999999999999876643 6999999996
No 362
>PRK06523 short chain dehydrogenase; Provisional
Probab=31.74 E-value=2.1e+02 Score=21.12 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEE--eecCCchh-------hhc-
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFI--QKWYPQTD-------ILA- 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~--~~~~p~~~-------~l~- 101 (174)
.+.++|+.||... -..+.+.|.+.+++++........ ..+.++.. .+..+... +..
T Consensus 9 ~k~vlItGas~gI--------G~~ia~~l~~~G~~v~~~~r~~~~------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 9 GKRALVTGGTKGI--------GAATVARLLEAGARVVTTARSRPD------DLPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCEEEEECCCCch--------hHHHHHHHHHCCCEEEEEeCChhh------hcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 3788999888764 345666666778888776654321 12223322 22222221 111
Q ss_pred CCCccEEEecCCh
Q psy16939 102 HPNLRLFITHGGI 114 (174)
Q Consensus 102 ~~~~~~~I~hgG~ 114 (174)
+...|.+|+.+|.
T Consensus 75 ~~~id~vi~~ag~ 87 (260)
T PRK06523 75 LGGVDILVHVLGG 87 (260)
T ss_pred cCCCCEEEECCcc
Confidence 1568999999884
No 363
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.71 E-value=81 Score=20.89 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=26.8
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT 74 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~ 74 (174)
+++++.||.+. -.-+-.+.++|.+.|++|.+.+...
T Consensus 1 Ili~~~Gt~Gh-----v~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATGGTRGH-----VYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEESSHHH-----HHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEcCChhH-----HHHHHHHHHHHhccCCeEEEeeccc
Confidence 46788888863 4457789999999999998777653
No 364
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=31.69 E-value=1.3e+02 Score=25.81 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCccccc-cCCCCCEEEeecCCch-h-------hhcCCCccEEEecCCh------
Q psy16939 50 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNA-KTLPDNVFIQKWYPQT-D-------ILAHPNLRLFITHGGI------ 114 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~nv~~~~~~p~~-~-------~l~~~~~~~~I~hgG~------ 114 (174)
....+.+++.|++.+.+.++-+.+.....+.. .....++.++...... . -....+..++++|.|-
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 44557777777777777666665543221111 0112234444322111 0 0011345677777774
Q ss_pred hhHHHHHHcCCCeEecc
Q psy16939 115 SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 115 ~t~~eal~~g~P~i~vP 131 (174)
+.+.||-..++|+|++.
T Consensus 89 ~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLT 105 (568)
T ss_pred HHHHHHhhcCCcEEEEE
Confidence 46789999999999994
No 365
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=31.48 E-value=1.1e+02 Score=26.88 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=39.5
Q ss_pred CCchhhhcCCCccEEEecC-----ChhhHHHHHHcCCCeEeccccc-hHHHHHHH--HHHcCceeEecCCCCCHHHHHHH
Q psy16939 94 YPQTDILAHPNLRLFITHG-----GISSLMEASSLGVPVLGVPFFG-DQYRNMVL--LRHRGYALIEPIQTLTKQSFLKN 165 (174)
Q Consensus 94 ~p~~~~l~~~~~~~~I~hg-----G~~t~~eal~~g~P~i~vP~~~-dQ~~na~~--l~~~G~g~~l~~~~~~~~~l~~a 165 (174)
+++.+++ ..||+-|--. |+ |-.||++.|+|.|.=-+-+ -++.+-.. -...|+-++ ++.+-+.++..+.
T Consensus 461 l~Y~dfv--~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vv-dR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFV--RGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVV-DRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHH--HHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--SSSS-HHHHHHH
T ss_pred CCHHHHh--ccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEE-eCCCCCHHHHHHH
Confidence 4566777 6788888776 65 8999999999999876532 22222111 122344444 4455577776666
Q ss_pred HHHhh
Q psy16939 166 AQTML 170 (174)
Q Consensus 166 l~~ll 170 (174)
|.+.|
T Consensus 537 la~~l 541 (633)
T PF05693_consen 537 LADFL 541 (633)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 366
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=31.40 E-value=2.7e+02 Score=22.25 Aligned_cols=25 Identities=0% Similarity=-0.085 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCC
Q psy16939 51 ETKLGFLEVFKQLKLPIFWKIDITN 75 (174)
Q Consensus 51 ~~~~~i~~~l~~~~~~~i~~~~~~~ 75 (174)
..+..+.++|.+.|+++.+.+....
T Consensus 11 ~~~~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 11 GQFRHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred hhHHHHHHHHHHCCCEEEEEecCCC
Confidence 3478899999999998777665543
No 367
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.37 E-value=2e+02 Score=22.93 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=22.1
Q ss_pred CCccEEEecCChhhHHHH-----HHcCCCeEecccc
Q psy16939 103 PNLRLFITHGGISSLMEA-----SSLGVPVLGVPFF 133 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~ea-----l~~g~P~i~vP~~ 133 (174)
.++|.+|.=||. ++++. ...++|++.||..
T Consensus 75 ~~~D~iIavGGG-s~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 75 NGADVIIGIGGG-KVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHhCCCEEEecCc
Confidence 568999998884 44443 3448999999973
No 368
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=31.30 E-value=80 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.9
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 77 g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 77 GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 5677888888866 4689999999999994
No 369
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=31.28 E-value=1e+02 Score=26.60 Aligned_cols=77 Identities=14% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCChhhHH------H
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGGISSLM------E 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG~~t~~------e 119 (174)
+.+++.|++.+.+.++-..+.....+.+.-...+++++. ++=...-....+..++++|.|-|.+. +
T Consensus 6 ~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~ 85 (579)
T TIGR03457 6 EAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA 85 (579)
T ss_pred HHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH
Q ss_pred HHHcCCCeEec
Q psy16939 120 ASSLGVPVLGV 130 (174)
Q Consensus 120 al~~g~P~i~v 130 (174)
|...++|+|++
T Consensus 86 A~~~~~Pvl~I 96 (579)
T TIGR03457 86 AYWAHTPVVIV 96 (579)
T ss_pred HhhcCCCEEEE
No 370
>PRK13463 phosphatase PhoE; Provisional
Probab=31.19 E-value=37 Score=24.77 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.4
Q ss_pred CccEEEecCChhhHHHHHHcCCCe
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
..-++|+|||...+.-+.+.|.|.
T Consensus 144 ~~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 144 ESILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred CEEEEEeChHHHHHHHHHHhCCCH
Confidence 356899999998888888877765
No 371
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=30.94 E-value=1.5e+02 Score=19.26 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=21.3
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
-|+++.+.. .++.+..+++.|...|++++-
T Consensus 2 ~vlisv~~~------dk~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 2 GILISIGSY------SKPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred cEEEecCcc------cchhHHHHHHHHHHCCCEEEE
Confidence 467777665 244577888889899988754
No 372
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=30.90 E-value=53 Score=25.33 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=23.0
Q ss_pred ccCCccccCChHHHHHHHhcCCCCeEEEEcCCCcC
Q psy16939 10 KLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVD 44 (174)
Q Consensus 10 ~~~g~~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~ 44 (174)
.+.|+....+.+++..-.+..+++.++|++|++..
T Consensus 76 LVtG~VT~km~~~L~rlyeqmP~PK~VIAvGaCA~ 110 (264)
T PRK14819 76 IVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACAT 110 (264)
T ss_pred EEecCCchhhHHHHHHHHHhccCCCeEEEEccccc
Confidence 34566666666666666666666777777777654
No 373
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=30.87 E-value=44 Score=13.52 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=8.6
Q ss_pred hhhHHHHHHcCC
Q psy16939 114 ISSLMEASSLGV 125 (174)
Q Consensus 114 ~~t~~eal~~g~ 125 (174)
+.|+.||+..|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 457788887764
No 374
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=30.60 E-value=2e+02 Score=22.39 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=35.3
Q ss_pred ChHHHHHHHhcC------C-CCeEEEEcCCCcCCCCCCHHHHHHHHH---HHhhCCCcEEEEecC
Q psy16939 19 GLSDLQQRADAA------K-GGFVYMSFGSVVDPTKLSEETKLGFLE---VFKQLKLPIFWKIDI 73 (174)
Q Consensus 19 ~~~~~~~~~~~~------~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~---~l~~~~~~~i~~~~~ 73 (174)
.++|.++|+... . +++++|-.|+.... ..+.++.++. .|.+.|.+.|+++|+
T Consensus 15 ~~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~---~~~~~~~l~~dla~L~~lGl~~VlVHGg 76 (271)
T cd04236 15 DPREARYWLTQFQIAMPNDWPAFAVLEVDHSVFR---SLEMVQSLSFGLAFLQRMDMKLLVVMGL 76 (271)
T ss_pred CHHHHHHHHHHhhccCCCCCCCEEEEEEChhhhc---CchhHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467788887742 2 68999999998762 2344444444 556678888887776
No 375
>PRK08264 short chain dehydrogenase; Validated
Probab=30.28 E-value=2.2e+02 Score=20.72 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCCCCccccccCCCCCEEEe--ecCCchh---hhc-CCC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDITNDPVLNAKTLPDNVFIQ--KWYPQTD---ILA-HPN 104 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~nv~~~--~~~p~~~---~l~-~~~ 104 (174)
.+.++|+.||... -..++..|.+.+. +++.........+ ....++.+. +..+... ++. ...
T Consensus 6 ~~~vlItGgsg~i--------G~~la~~l~~~G~~~V~~~~r~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 6 GKVVLVTGANRGI--------GRAFVEQLLARGAAKVYAAARDPESVT----DLGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCEEEEECCCchH--------HHHHHHHHHHCCcccEEEEecChhhhh----hcCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 3678888887754 4556666677787 7766655422110 122333333 3333222 221 135
Q ss_pred ccEEEecCCh
Q psy16939 105 LRLFITHGGI 114 (174)
Q Consensus 105 ~~~~I~hgG~ 114 (174)
.|++|+.+|.
T Consensus 74 id~vi~~ag~ 83 (238)
T PRK08264 74 VTILVNNAGI 83 (238)
T ss_pred CCEEEECCCc
Confidence 8999999987
No 376
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=30.20 E-value=86 Score=26.94 Aligned_cols=77 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|++.+.+.++-..+.....+......++++++. |+-...-....+..++++|.| .+.+.+
T Consensus 14 ~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~ 93 (569)
T PRK09259 14 HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN 93 (569)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH
Q ss_pred HHHcCCCeEec
Q psy16939 120 ASSLGVPVLGV 130 (174)
Q Consensus 120 al~~g~P~i~v 130 (174)
|...++|+|++
T Consensus 94 A~~~~~Pvl~I 104 (569)
T PRK09259 94 ATTNCFPMIMI 104 (569)
T ss_pred HHhcCCCEEEE
No 377
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.08 E-value=3.2e+02 Score=22.58 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.5
Q ss_pred hhcCCCccEEEecCChhhHHHHHHcCCCeEecc
Q psy16939 99 ILAHPNLRLFITHGGISSLMEASSLGVPVLGVP 131 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP 131 (174)
++..-+.|++|.++|.-....+...|+|.+-+.
T Consensus 368 ~l~~~~pDl~i~~~~~~~~~~~~~~gip~~~~~ 400 (426)
T cd01972 368 LLKRVKPDFIIFRHGGLFPDATVYLGIPVVPLN 400 (426)
T ss_pred HHHHhCCCEEEEcCCCccHHHHHhcCCCEEecc
Confidence 344467899998887767777888999998773
No 378
>PRK06482 short chain dehydrogenase; Provisional
Probab=29.87 E-value=1.6e+02 Score=22.11 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=39.0
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeec--CCchhh---h-----c
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKW--YPQTDI---L-----A 101 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~--~p~~~~---l-----~ 101 (174)
+.++|+.|+... -..++..|.+.+++++....... ...+.. ..+.++.+... .+...+ + .
T Consensus 3 k~vlVtGasg~I--------G~~la~~L~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGF--------GRGMTERLLARGDRVAATVRRPDALDDLKA-RYGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CEEEEecCCCHH--------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 568888887653 44456666677888776655421 111111 12334443332 222211 1 1
Q ss_pred CCCccEEEecCChh
Q psy16939 102 HPNLRLFITHGGIS 115 (174)
Q Consensus 102 ~~~~~~~I~hgG~~ 115 (174)
+...|.+|+-+|..
T Consensus 74 ~~~id~vi~~ag~~ 87 (276)
T PRK06482 74 LGRIDVVVSNAGYG 87 (276)
T ss_pred cCCCCEEEECCCCC
Confidence 24579999988853
No 379
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=29.83 E-value=2.1e+02 Score=24.19 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=72.2
Q ss_pred cCChHHHHHHHhcCCCCeEEE-EcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC--CCCccccccCCCCCEEEeec
Q psy16939 17 IDGLSDLQQRADAAKGGFVYM-SFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI--TNDPVLNAKTLPDNVFIQKW 93 (174)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~v~v-s~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~--~~~~~~~~~~~~~nv~~~~~ 93 (174)
..-+++....+...+ ++|+| ..|--.. .....+.++.+.|++.+.+|-....+ .++| ..-||.+.+-
T Consensus 293 ~~~~~d~a~~l~~A~-~ViIVPGYGmAVA---qAQh~v~el~~~L~~~Gv~V~faIHPVAGRMP------GHMNVLLAEA 362 (462)
T PRK09444 293 ETTAEEVAEMLKNSH-SVIITPGYGMAVA---QAQYPVAEITEKLRARGINVRFGIHPVAGRLP------GHMNVLLAEA 362 (462)
T ss_pred ecCHHHHHHHHHhCC-cEEEECChHHHHH---HHHHHHHHHHHHHHHCCCeEEEEeccccccCC------CcceeEEeec
Confidence 345667777787766 44433 3343332 24567899999999999988777665 3344 3457777774
Q ss_pred -CCchhhhc-------CCCccEEEecCChhhHHHHHH--cCCCeEeccc
Q psy16939 94 -YPQTDILA-------HPNLRLFITHGGISSLMEASS--LGVPVLGVPF 132 (174)
Q Consensus 94 -~p~~~~l~-------~~~~~~~I~hgG~~t~~eal~--~g~P~i~vP~ 132 (174)
+|++.++. .+++|+++-=|-..++.-+.. -+-|+-..|.
T Consensus 363 ~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPv 411 (462)
T PRK09444 363 KVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPV 411 (462)
T ss_pred CCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCce
Confidence 78775543 278999999998888888874 3677777774
No 380
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.80 E-value=1.3e+02 Score=21.37 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=47.4
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEe-cCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecC
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI-DITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHG 112 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~-~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hg 112 (174)
+.+++.|+..............+.+.+.+.|..+.... -+++...+.+ . + ...+ ..+|++|+-|
T Consensus 2 v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~-~----------l--~~~~--~~~dlVIttG 66 (170)
T cd00885 2 AEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAE-A----------L--RRAS--ERADLVITTG 66 (170)
T ss_pred EEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHH-H----------H--HHHH--hCCCEEEECC
Confidence 34566677544333334556677778888888654422 1222221100 0 0 1223 4699999999
Q ss_pred Chhh-----HHHHHH--cCCCeEecccc
Q psy16939 113 GISS-----LMEASS--LGVPVLGVPFF 133 (174)
Q Consensus 113 G~~t-----~~eal~--~g~P~i~vP~~ 133 (174)
|.|. +.|+++ .|+|+...+..
T Consensus 67 G~G~t~~D~t~ea~~~~~~~~l~~~~e~ 94 (170)
T cd00885 67 GLGPTHDDLTREAVAKAFGRPLVLDEEA 94 (170)
T ss_pred CCCCCCCChHHHHHHHHhCCCcccCHHH
Confidence 9774 344443 58887777643
No 381
>PRK00861 putative lipid kinase; Reviewed
Probab=29.79 E-value=62 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=24.6
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~vP~ 132 (174)
...|++|.-||-||+.|++. .++|+-++|.
T Consensus 56 ~~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~ 89 (300)
T PRK00861 56 RGAELIIASGGDGTLSAVAGALIGTDIPLGIIPR 89 (300)
T ss_pred cCCCEEEEECChHHHHHHHHHHhcCCCcEEEEcC
Confidence 55799999999999999853 4567888896
No 382
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.31 E-value=1.9e+02 Score=24.87 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CCccccccCCCCCEEEeecC------
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-NDPVLNAKTLPDNVFIQKWY------ 94 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~nv~~~~~~------ 94 (174)
++.+++...++|+|++..|.... +..+++.+..+.++.+|+-...+. .+++ ..|.++-..+..
T Consensus 205 ~~~~~L~~AkrPvil~G~g~~~~------~a~~~l~~lae~lg~pV~~t~~~kg~~p~----~hp~~~G~~g~~~~~~~~ 274 (578)
T PRK06112 205 EAASLLAQAQRPVVVAGGGVHIS------GASAALAALQSLAGLPVATTNMGKGAVDE----THPLSLGVVGSLMGPRSP 274 (578)
T ss_pred HHHHHHHcCCCcEEEECCCcccc------chHHHHHHHHHHhCCCEEEcccccccCCC----CCccccccccccCCCccc
Confidence 34556666667777776666432 123445555555677877544332 2221 222222222211
Q ss_pred --CchhhhcCCCccEEEecCC
Q psy16939 95 --PQTDILAHPNLRLFITHGG 113 (174)
Q Consensus 95 --p~~~~l~~~~~~~~I~hgG 113 (174)
.-..++ ..+|++|.=|.
T Consensus 275 ~~~~~~~l--~~aDlvl~lG~ 293 (578)
T PRK06112 275 GRHLRDLV--READVVLLVGT 293 (578)
T ss_pred hHHHHHHH--HhCCEEEEECC
Confidence 122345 56899888774
No 383
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=29.26 E-value=2.5e+02 Score=22.71 Aligned_cols=48 Identities=17% Similarity=0.011 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
+.++-+.+-..+ +++|+-++|+... +..+.+.+.++. +.+..++....
T Consensus 251 ~~~ll~~~~~~g~~GlVl~g~G~Gn~----p~~~~~al~~a~-~~GipVV~~Sr 299 (349)
T TIGR00520 251 PPLIVNAVLDAGAKGIVLAGVGNGSL----SAAGLKVNETAA-KLGVPIVRSSR 299 (349)
T ss_pred CHHHHHHHHhCCCCEEEEEeECCCCC----CHHHHHHHHHHH-HCCCEEEEEcc
Confidence 444444443444 7999999998865 666566555544 45777666554
No 384
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=29.24 E-value=40 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=18.6
Q ss_pred CccEEEecCChhhHHHHHHcCCC
Q psy16939 104 NLRLFITHGGISSLMEASSLGVP 126 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P 126 (174)
..-++|+|||...+.-+...|.|
T Consensus 175 ~~vlvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 175 QTVLVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred CeEEEEeChHHHHHHHHHHhCCC
Confidence 34589999999888888777876
No 385
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=29.17 E-value=1.6e+02 Score=22.24 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=32.5
Q ss_pred cCccccCCcccc-CChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q psy16939 6 NRAVKLCSMCFI-DGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWK 70 (174)
Q Consensus 6 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~ 70 (174)
++.+-+.+|.+. +.|+..++.+..++.|.|+++=+-. .+..+.+++.|...|+.
T Consensus 61 pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg-----------~~vkdeleeqGlGYIiv 115 (277)
T COG1927 61 PDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPG-----------LKVKDELEEQGLGYIIV 115 (277)
T ss_pred CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCcc-----------chhHHHHHhcCCeEEEe
Confidence 366667777765 5666677766666666777655432 12345666666665554
No 386
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.14 E-value=1.3e+02 Score=25.80 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|- +.+.+|.+.++|+|++.
T Consensus 65 g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 65 GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 567788888884 46789999999999994
No 387
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.14 E-value=1.9e+02 Score=19.80 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCH----HHHHHHHHHHhh--CCCcEEEEec
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSE----ETKLGFLEVFKQ--LKLPIFWKID 72 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~----~~~~~i~~~l~~--~~~~~i~~~~ 72 (174)
+.+.+++... ..+|++.+|+-......+. +.++++++.+.+ .+.+++|...
T Consensus 39 ~~l~~~~~~~-pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 39 ARLDEDVALQ-PKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred HHHHHHhccC-CCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4455555223 4789999998765322222 346666666666 4567887654
No 388
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.02 E-value=33 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.3
Q ss_pred ccEEEecCChhhHHHHHHcCCCe
Q psy16939 105 LRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
.|.+++.=|..|..|||..|++-
T Consensus 24 ~dhvL~~LGgrT~~eAL~~G~dp 46 (63)
T PF11248_consen 24 RDHVLSELGGRTAAEALEAGVDP 46 (63)
T ss_pred HhcchhhcCCcCHHHHHHcCCCH
Confidence 56778888888999999999873
No 389
>PRK02399 hypothetical protein; Provisional
Probab=28.97 E-value=1.6e+02 Score=24.49 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=52.3
Q ss_pred CCeEEEEc-CCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC----CCCccccccCCCCCEEEeecCCchhhhcCCCcc
Q psy16939 32 GGFVYMSF-GSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI----TNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLR 106 (174)
Q Consensus 32 ~~~v~vs~-Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~----~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~ 106 (174)
||.|-+|+ |.. ..-.+.+.+.|++.++.+++.+.. ..++++-+ + ..---+.+.-. .++..+ .-
T Consensus 186 kp~Ig~TmfGvT-------tp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li~-~-G~~~gVlDlTt-tEv~d~--l~ 253 (406)
T PRK02399 186 KPLIGLTMFGVT-------TPCVQAAREELEARGYEVLVFHATGTGGRAMEKLID-S-GLIAGVLDLTT-TEVCDE--LF 253 (406)
T ss_pred CceEEEecCCCc-------HHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHH-c-CCceEEEEcch-HHHHHH--Hh
Confidence 78888777 544 345888899999999987766432 33333211 0 11112233322 121111 11
Q ss_pred EEEecCChhhHHHHHHcCCCeEecc
Q psy16939 107 LFITHGGISSLMEASSLGVPVLGVP 131 (174)
Q Consensus 107 ~~I~hgG~~t~~eal~~g~P~i~vP 131 (174)
--|..+|-.-+..+...|+|+|+.|
T Consensus 254 GGv~sagp~Rl~Aa~~~gIP~Vvs~ 278 (406)
T PRK02399 254 GGVLAAGPDRLEAAARTGIPQVVSP 278 (406)
T ss_pred CcCccCCccHHHHHHHcCCCEEecC
Confidence 1256678889999999999999777
No 390
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=28.90 E-value=2.7e+02 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
++.+++...++|+|++..|.... +..+++.+..+.++..|+-...
T Consensus 212 ~~~~~L~~AkrPvi~~G~g~~~~------~a~~~l~~lae~l~~Pv~tt~~ 256 (569)
T PRK08327 212 RAAEMLAAAERPVIITWRAGRTA------EGFASLRRLAEELAIPVVEYAG 256 (569)
T ss_pred HHHHHHHhCCCCEEEEecccCCc------ccHHHHHHHHHHhCCCEEecCC
Confidence 34456666666777777666532 2244455555556777765433
No 391
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=28.65 E-value=2.1e+02 Score=20.10 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=34.3
Q ss_pred HHcCCCeEeccccch--HHHHHHHHHHcCceeEecCCCCCHHHHHHHHH
Q psy16939 121 SSLGVPVLGVPFFGD--QYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQ 167 (174)
Q Consensus 121 l~~g~P~i~vP~~~d--Q~~na~~l~~~G~g~~l~~~~~~~~~l~~al~ 167 (174)
-..|++++.+....+ +....+.+.+.+-|......+.+...+..+++
T Consensus 129 ~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 129 RARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred HhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 356888888866442 34455778888888888778888888887765
No 392
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=28.63 E-value=1.7e+02 Score=20.04 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE
Q psy16939 20 LSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW 69 (174)
Q Consensus 20 ~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~ 69 (174)
.+++.+++.+..=.-|++++... ..+.++++++.+++.+.++-+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~------~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWS------EEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-------HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCcc------CHHHHHHHHHHHHhCCCEEEE
Confidence 46788888887745788888655 577899999999999887643
No 393
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=28.59 E-value=54 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=17.9
Q ss_pred cEEEecCChhhHHHHHHcCCCeE
Q psy16939 106 RLFITHGGISSLMEASSLGVPVL 128 (174)
Q Consensus 106 ~~~I~hgG~~t~~eal~~g~P~i 128 (174)
-++|+|||.....=+...|.|.-
T Consensus 147 vliVsHg~~ir~ll~~~lg~~~~ 169 (204)
T TIGR03848 147 WVACSHGDVIKSVLADALGMHLD 169 (204)
T ss_pred EEEEeCChHHHHHHHHHhCCCHH
Confidence 47999999888777777777653
No 394
>PRK12361 hypothetical protein; Provisional
Probab=28.53 E-value=66 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCccEEEecCChhhHHHHHH----cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS----LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~----~g~P~i~vP~ 132 (174)
...|.+|.-||-||+.|.+. .++|+-++|.
T Consensus 296 ~~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 296 AGADIVIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred cCCCEEEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 45789999999999999873 3678888896
No 395
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=28.16 E-value=2.1e+02 Score=24.26 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=41.7
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEe--cCCCCccccccCCCCCEEEeec--CCchh
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI--DITNDPVLNAKTLPDNVFIQKW--YPQTD 98 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~--~~~~~~~~~~~~~~~nv~~~~~--~p~~~ 98 (174)
+.+.+...++|+|++..|... .+..+++.+..+.++..|+-.. +....++ ..|.++-..+. -....
T Consensus 199 ~~~~L~~AkrPvIl~G~g~~~------~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~----~hp~~~G~~g~~~~~~~~ 268 (530)
T PRK07092 199 LGDALDAARRPALVVGPAVDR------AGAWDDAVRLAERHRAPVWVAPMSGRCSFPE----DHPLFAGFLPASREKISA 268 (530)
T ss_pred HHHHHHcCCCcEEEECCCcch------hhhHHHHHHHHHHHCCcEEEecCCCcCcCCC----CCccccCcCCccHHHHHH
Confidence 345566666777777666652 2234455555556688887543 2333331 22222111111 12334
Q ss_pred hhcCCCccEEEecCC
Q psy16939 99 ILAHPNLRLFITHGG 113 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG 113 (174)
++ .++|++|.=|.
T Consensus 269 ~l--~~aDlvl~lG~ 281 (530)
T PRK07092 269 LL--DGHDLVLVIGA 281 (530)
T ss_pred HH--hhCCEEEEECC
Confidence 56 67999999885
No 396
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=28.01 E-value=1.3e+02 Score=25.82 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCccEEEecCChh------hHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGIS------SLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~------t~~eal~~g~P~i~vP 131 (174)
.+..++++|.|-| .+++|...++|+|++.
T Consensus 64 g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 64 QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 98 (554)
T ss_pred CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEE
Confidence 4567778886644 5788999999999994
No 397
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=27.93 E-value=2.5e+02 Score=22.52 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCCEEEeecCCchhhhcCCCccEEEecCChhhHHHHHHcCCCeEeccccchHHHHHHHHH-HcCce-eEec------CCC
Q psy16939 85 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR-HRGYA-LIEP------IQT 156 (174)
Q Consensus 85 ~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~-~~G~g-~~l~------~~~ 156 (174)
.++..++.|+.-..-.. +.+|+.+|.+-+--+.|.+.-+.+++.+| ||..- .+++ +.|.. +.+- .+.
T Consensus 121 ~P~~~vV~YvNtsA~vK-A~~Di~cTSsNAvkvVe~~~~~~~Iif~P---D~~Lg-~yva~~tg~k~ii~w~G~C~VH~~ 195 (324)
T COG0379 121 HPDAPVVTYVNTSAEVK-AEADICCTSSNAVKVVESALDGDKILFLP---DKNLG-RYVAKQTGAKKIILWPGHCIVHEE 195 (324)
T ss_pred CCCCceEEEeeChHHHH-hhcCeEEecchHHHHHHhccCCCcEEEcC---cHHHH-HHHHHHcCCCcEEEECCccchhhh
Confidence 34788888887666554 67999999999999999986678888887 44443 3443 34662 2221 235
Q ss_pred CCHHHHHHH
Q psy16939 157 LTKQSFLKN 165 (174)
Q Consensus 157 ~~~~~l~~a 165 (174)
++.++|.+.
T Consensus 196 ft~~~i~~~ 204 (324)
T COG0379 196 FTAEDIEEL 204 (324)
T ss_pred cCHHHHHHH
Confidence 677776654
No 398
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=27.53 E-value=44 Score=23.46 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=18.3
Q ss_pred CccEEEecCChhhHHHHHHcCCC
Q psy16939 104 NLRLFITHGGISSLMEASSLGVP 126 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P 126 (174)
+--++|+|||...+.-+...|.|
T Consensus 138 ~~vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 138 DNVLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred CeEEEEECHHHHHHHHHHHhCCC
Confidence 34679999998888877777766
No 399
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=27.49 E-value=2.1e+02 Score=22.28 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC-CC-ccEEEe--cCC-hhhHHHHHHc
Q psy16939 49 SEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH-PN-LRLFIT--HGG-ISSLMEASSL 123 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~-~~-~~~~I~--hgG-~~t~~eal~~ 123 (174)
..+.++.++++.++.+.++|+........ ..+. . ..+.+...-++. .+ +.+++| ||. ...+.+++..
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~-----~~~~-~--~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~ 96 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIK-----YMGG-Y--KMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKA 96 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhh-----ccCc-H--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHc
Confidence 57789999999999999999987654322 1110 0 001222221111 22 446666 664 5677799999
Q ss_pred CCCeEec
Q psy16939 124 GVPVLGV 130 (174)
Q Consensus 124 g~P~i~v 130 (174)
|.-.|.+
T Consensus 97 Gf~sVmi 103 (282)
T TIGR01859 97 GFSSVMI 103 (282)
T ss_pred CCCEEEE
Confidence 9998888
No 400
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=27.42 E-value=2.8e+02 Score=22.05 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
++..++..-+++|+-++|+... +..+.+.+.++. +.+..++....
T Consensus 228 l~~~~~~~~~GlVl~~~G~Gn~----p~~~~~~l~~a~-~~gipVV~~sq 272 (323)
T smart00870 228 LDALLDSGAKGLVLEGTGAGNV----PPDLLEALKEAL-ERGIPVVRTSR 272 (323)
T ss_pred HHHHHhCCCCEEEEEeeCCCCC----CHHHHHHHHHHH-HCCCEEEEecc
Confidence 4444443228999999999864 666555555554 44666666544
No 401
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=27.29 E-value=2.2e+02 Score=19.94 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCccEEEecCCh-----hhHHHHHHcCCCeEeccc--cchHHHHHHHHHHcCceeE
Q psy16939 103 PNLRLFITHGGI-----SSLMEASSLGVPVLGVPF--FGDQYRNMVLLRHRGYALI 151 (174)
Q Consensus 103 ~~~~~~I~hgG~-----~t~~eal~~g~P~i~vP~--~~dQ~~na~~l~~~G~g~~ 151 (174)
+..-+++++|-. -|..-|..++||++.+-. ..+-.....++.+.++.+.
T Consensus 64 sDgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~vL 119 (145)
T PF12694_consen 64 SDGTLIFTRGELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIRVL 119 (145)
T ss_dssp SSEEEEEESSS--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--EE
T ss_pred cCeEEEEecCCCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCceEE
Confidence 456678887753 366778899999999933 2345556677788888875
No 402
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=27.25 E-value=2.7e+02 Score=22.12 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEE-EecCCCCccccccCCCCCEEEeecCCchhhh
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFW-KIDITNDPVLNAKTLPDNVFIQKWYPQTDIL 100 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~-~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l 100 (174)
++.+++... +++++|+ |... .....+++.+.|+..+..+.+ ...+.+... .. +++ ..-+....-.
T Consensus 12 ~l~~~l~~~-~~~livt-d~~~-----~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~----~~-~~v--~~~~~~~~~~ 77 (344)
T TIGR01357 12 QLVEELAEP-SKLVIIT-DETV-----ADLYADKLLEALQALGYNVLKLTVPDGEESK----SL-ETV--QRLYDQLLEA 77 (344)
T ss_pred HHHHHhhcC-CeEEEEE-CCch-----HHHHHHHHHHHHHhcCCceeEEEeCCCCCCC----CH-HHH--HHHHHHHHHc
Confidence 344444442 4566666 4332 234678888888887765433 232211110 00 000 0000000000
Q ss_pred cCCCccEEEecCChhhHHHH-------HHcCCCeEecccc
Q psy16939 101 AHPNLRLFITHGGISSLMEA-------SSLGVPVLGVPFF 133 (174)
Q Consensus 101 ~~~~~~~~I~hgG~~t~~ea-------l~~g~P~i~vP~~ 133 (174)
...+.|++|.=||..+ .++ ...|+|.+.||..
T Consensus 78 ~~~r~d~IIavGGGsv-~D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 78 GLDRSSTIIALGGGVV-GDLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred CCCCCCEEEEEcChHH-HHHHHHHHHHHccCCCEEEecCc
Confidence 1133588998888543 332 2348999999984
No 403
>PRK08462 biotin carboxylase; Validated
Probab=27.24 E-value=3.6e+02 Score=22.26 Aligned_cols=95 Identities=11% Similarity=0.174 Sum_probs=51.9
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCC--ccccccCCCCCEEEe-------ecCCchhhhc---CCCccEEEecCChh----h
Q psy16939 53 KLGFLEVFKQLKLPIFWKIDITND--PVLNAKTLPDNVFIQ-------KWYPQTDILA---HPNLRLFITHGGIS----S 116 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~~~~~--~~~~~~~~~~nv~~~-------~~~p~~~~l~---~~~~~~~I~hgG~~----t 116 (174)
...++.+++++|+.++..+...+. +.+ ...+..... +|.+...++. ...+|+++.-.|.- +
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~~~~~---~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~ 92 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYL---KYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQN 92 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcCCchh---hhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHH
Confidence 457888999999988877654322 111 223334434 5655444442 24689888876542 2
Q ss_pred HHH-HHHcCCCeEeccc-----cchHHHHHHHHHHcCcee
Q psy16939 117 LME-ASSLGVPVLGVPF-----FGDQYRNMVLLRHRGYAL 150 (174)
Q Consensus 117 ~~e-al~~g~P~i~vP~-----~~dQ~~na~~l~~~G~g~ 150 (174)
+.+ +-..|+|.+.-+. ..|-..-.+.++++|+-.
T Consensus 93 ~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~ 132 (445)
T PRK08462 93 FVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPV 132 (445)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCC
Confidence 222 2256888776432 234444444555555544
No 404
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.14 E-value=1.2e+02 Score=21.61 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhCCCc
Q psy16939 50 EETKLGFLEVFKQLKLP 66 (174)
Q Consensus 50 ~~~~~~i~~~l~~~~~~ 66 (174)
.+..++....|+..+..
T Consensus 11 ~~~~~~a~~~L~~~gi~ 27 (156)
T TIGR01162 11 LPTMKKAADILEEFGIP 27 (156)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 45566666666666554
No 405
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.07 E-value=1.1e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI 73 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 73 (174)
.++++|+.|+... -..+.+.|.+.+++++.....
T Consensus 15 ~k~vlItGas~gI--------G~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGL--------GQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchH--------HHHHHHHHHHCCCEEEEEeCC
Confidence 3788998887753 455666777788887776554
No 406
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=1.7e+02 Score=21.14 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=37.4
Q ss_pred hHHHHHHcCCCeEecccc--chHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcCC
Q psy16939 116 SLMEASSLGVPVLGVPFF--GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 116 t~~eal~~g~P~i~vP~~--~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 173 (174)
|..|--.+|.=-+- |.- -=+..|+.+.++.|.=.++--+..+.++|.+++.+=|+|+
T Consensus 89 S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~ 147 (176)
T COG3195 89 STSEQASAGLDRLS-PEEFARFTELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDND 147 (176)
T ss_pred hHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhccc
Confidence 45555555543322 111 1256799999999998887666678888888887766654
No 407
>PRK06349 homoserine dehydrogenase; Provisional
Probab=27.03 E-value=3.7e+02 Score=22.31 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=35.0
Q ss_pred CchhhhcCCCccEEEec-CC----hhhHHHHHHcCCCeEec-c-ccchH-HHHHHHHHHcCceeEe
Q psy16939 95 PQTDILAHPNLRLFITH-GG----ISSLMEASSLGVPVLGV-P-FFGDQ-YRNMVLLRHRGYALIE 152 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~h-gG----~~t~~eal~~g~P~i~v-P-~~~dQ-~~na~~l~~~G~g~~l 152 (174)
+..+++..+..|++|-- || ..-+.+++.+|+.+++- | ...++ ..-....++.|+-+..
T Consensus 63 d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~f 128 (426)
T PRK06349 63 DPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYF 128 (426)
T ss_pred CHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 45667766789999843 33 34455999999999986 3 22232 2233334455665443
No 408
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=27.00 E-value=45 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=17.8
Q ss_pred ccEEEecCChhhHHHHHHcCCCe
Q psy16939 105 LRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
--++|+|||...+.=+...|.|.
T Consensus 175 ~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 175 RVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred eEEEEeCHHHHHHHHHHHhCCCH
Confidence 45899999988777777777664
No 409
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.99 E-value=2.7e+02 Score=24.04 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecC---Cch
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWY---PQT 97 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~---p~~ 97 (174)
++.+.+...++|+|++..|.... +..+++.+..+.++.+|+-...+.. +++ ..|.++-..+.. ...
T Consensus 213 ~~~~~L~~AkrPvil~G~g~~~~------~a~~~l~~lae~~g~pv~tt~~gkg~~~~----~hpl~~G~~G~~~~~~a~ 282 (587)
T PRK06965 213 KAVSLLLSAKRPYIYTGGGVILA------NASRELRQLADLLGYPVTNTLMGLGAYPA----SDKKFLGMLGMHGTYEAN 282 (587)
T ss_pred HHHHHHHhcCCCEEEECCCcccc------chHHHHHHHHHHhCCCEEEccccCCCCCC----CChhhcCCCCCCCCHHHH
Confidence 34456666667777776666532 2234444444456777775444322 221 222222222221 122
Q ss_pred hhhcCCCccEEEecCC
Q psy16939 98 DILAHPNLRLFITHGG 113 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG 113 (174)
..+ .++|++|.=|.
T Consensus 283 ~~~--~~aDlvl~lG~ 296 (587)
T PRK06965 283 MAM--QHCDVLIAIGA 296 (587)
T ss_pred HHH--HhCCEEEEECC
Confidence 355 56888888774
No 410
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=26.97 E-value=2.1e+02 Score=20.74 Aligned_cols=58 Identities=10% Similarity=-0.086 Sum_probs=29.8
Q ss_pred CccccCCccc-cCChHHHHHHHhcC----------CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCc
Q psy16939 7 RAVKLCSMCF-IDGLSDLQQRADAA----------KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLP 66 (174)
Q Consensus 7 ~~~~~~g~~~-~~~~~~~~~~~~~~----------~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~ 66 (174)
+.+.++.|.. ..++..+..|++.. .|+..+++.++... ......+..+...+...+..
T Consensus 70 D~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~--Gg~~~~l~~l~~~l~~~Gm~ 138 (197)
T TIGR01755 70 DAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQH--GGQESTILSTWTTLLHHGMI 138 (197)
T ss_pred CEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCC--CCHHHHHHHHHHHHHHCCCE
Confidence 3344444443 35777788887764 13333333322221 12345667777777766553
No 411
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=26.94 E-value=11 Score=26.17 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=29.6
Q ss_pred cccCCccccCChHHHHHHHhcCC--CCeEEEEcCCCcCCCCCCHHHHHHHH
Q psy16939 9 VKLCSMCFIDGLSDLQQRADAAK--GGFVYMSFGSVVDPTKLSEETKLGFL 57 (174)
Q Consensus 9 ~~~~g~~~~~~~~~~~~~~~~~~--~~~v~vs~Gs~~~~~~~~~~~~~~i~ 57 (174)
+..+|-+|--+++.++-+++.+= .+.||++.|+......++.+.+.++.
T Consensus 84 y~~GGvsP~G~~~~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~ 134 (139)
T cd04939 84 MEYGGITPVGLPAGWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELP 134 (139)
T ss_pred CCCccCCcCCcCCCCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHh
Confidence 34444444444555666666542 57899999998775555555555544
No 412
>KOG3135|consensus
Probab=26.82 E-value=2.5e+02 Score=20.40 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=31.0
Q ss_pred cccCChHHHHHHHhcC----------CCC-eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcE
Q psy16939 15 CFIDGLSDLQQRADAA----------KGG-FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPI 67 (174)
Q Consensus 15 ~~~~~~~~~~~~~~~~----------~~~-~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~ 67 (174)
.|..+|.++..|++.. .|+ =+|+|.||... ..+......+..|..++.-|
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gG---gqE~talta~t~LvHHGmif 140 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGG---GQETTALTAITQLVHHGMIF 140 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCC---chHhHHHHHHHHHHhcceEE
Confidence 4457899999999864 123 38999998876 23333444444555555433
No 413
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.74 E-value=2.3e+02 Score=24.49 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecC---Cch
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWY---PQT 97 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~---p~~ 97 (174)
+..+.+.+.++|+|++..|.... . -.+++.+..+.++.+++....+.. .+. ..+..+-..+.. ...
T Consensus 192 ~aa~~L~~AkrPvIl~G~G~~~a-----~-a~~~l~~lae~~~~Pv~~t~~gkg~~p~----~hp~~lG~~g~~g~~~a~ 261 (550)
T COG0028 192 KAAELLAEAKRPVILAGGGVRRA-----G-ASEELRELAEKLGAPVVTTLMGKGAVPE----DHPLSLGMLGMHGTKAAN 261 (550)
T ss_pred HHHHHHHhCCCCEEEECCCcccc-----c-cHHHHHHHHHHHCCCEEEccCcCccCCC----CCccccccccccccHHHH
Confidence 34445666667888887777754 1 234444444555778877665433 221 222222222221 122
Q ss_pred hhhcCCCccEEEecCC
Q psy16939 98 DILAHPNLRLFITHGG 113 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG 113 (174)
..+ ..||++|.=|.
T Consensus 262 ~~~--~~aDlll~vG~ 275 (550)
T COG0028 262 EAL--EEADLLLAVGA 275 (550)
T ss_pred HHh--hcCCEEEEecC
Confidence 334 56888888876
No 414
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=26.63 E-value=3e+02 Score=26.26 Aligned_cols=95 Identities=11% Similarity=0.156 Sum_probs=57.4
Q ss_pred cccccCccccCCccccCChH-------------HHHHHHhcC---CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 2 VSVLNRAVKLCSMCFIDGLS-------------DLQQRADAA---KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
+.+||.+..+...-+..+|. -++.++.+. ++.+.++-.||.... ..-+.+.++|.-+|.
T Consensus 736 pdvLPTGRNfys~Dpr~iPT~aAw~~G~~lAe~ll~~y~~ehG~yPe~va~~lWgt~tmR-----t~Ge~iAqiL~LlGV 810 (1122)
T TIGR02257 736 PDVLPTGRNFYSVDLRGLPTPAAWDLGKKSAEQLIERYLQDHGDWPRSLALSVWGTATMR-----TGGEDIAQALALLGV 810 (1122)
T ss_pred CCCCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEchHhhh-----hCCHHHHHHHHHcCC
Confidence 35666666666655554441 123344432 377888888887652 234556777777898
Q ss_pred cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 66 PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
+=+|-.+..... .+.+ +|.. .|..|+.|++|.=.|.
T Consensus 811 rPvWd~~~grV~---------g~ei---IPl~-eLgRPRIDVtvriSG~ 846 (1122)
T TIGR02257 811 RPVWDGASRRVI---------DLEV---IPLS-LLGRPRVDVTLRISGL 846 (1122)
T ss_pred CccccCCCCccc---------ceEE---eCHH-HcCCCCeeEEEEechh
Confidence 878854322222 1222 3444 4567999999999984
No 415
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=26.55 E-value=1.2e+02 Score=25.79 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|++.+.+.++-..+.....+.+.-...+++++. |+-...-....+..++++|.| .+.+.+
T Consensus 3 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~ 82 (539)
T TIGR02418 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT 82 (539)
T ss_pred HHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH
Q ss_pred HHHcCCCeEec
Q psy16939 120 ASSLGVPVLGV 130 (174)
Q Consensus 120 al~~g~P~i~v 130 (174)
|...++|+|++
T Consensus 83 A~~~~~Pvl~I 93 (539)
T TIGR02418 83 ANSEGDPVVAI 93 (539)
T ss_pred HhhcCCCEEEE
No 416
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=26.52 E-value=1.3e+02 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCccEEEecCCh------hhHHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGI------SSLMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~------~t~~eal~~g~P~i~vP 131 (174)
.+-.++++|.|- +.+.+|...++|+|++.
T Consensus 63 gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 456777888774 46789999999999993
No 417
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=26.47 E-value=2.1e+02 Score=21.01 Aligned_cols=89 Identities=18% Similarity=0.080 Sum_probs=46.1
Q ss_pred cCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEE
Q psy16939 29 AAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLF 108 (174)
Q Consensus 29 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~ 108 (174)
..++++++|..|..+ ..-+..|...+..+.+...... +++.+.....++.+..--.....+ ..++++
T Consensus 7 l~gk~vlVvGgG~va----------~rk~~~Ll~~ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~~~dl--~~~~lV 73 (205)
T TIGR01470 7 LEGRAVLVVGGGDVA----------LRKARLLLKAGAQLRVIAEELE-SELTLLAEQGGITWLARCFDADIL--EGAFLV 73 (205)
T ss_pred cCCCeEEEECcCHHH----------HHHHHHHHHCCCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCCHHHh--CCcEEE
Confidence 334556666665553 2224555567877766554322 211110112255554322223445 679999
Q ss_pred EecCChhhHH-----HHHHcCCCeEec
Q psy16939 109 ITHGGISSLM-----EASSLGVPVLGV 130 (174)
Q Consensus 109 I~hgG~~t~~-----eal~~g~P~i~v 130 (174)
|..-|...+. +|-..|+|+-++
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 9988876443 344567888444
No 418
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=26.43 E-value=74 Score=23.23 Aligned_cols=34 Identities=6% Similarity=0.132 Sum_probs=19.4
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDIT 74 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~ 74 (174)
|++--|+... .. ...+.+..++.+. +++++.|.-
T Consensus 77 vllV~G~vt~---~~---~~~l~~~~e~mp~pk~VIA~GaC 111 (183)
T PRK06411 77 LMIVAGTLTN---KM---APALRRLYDQMPEPKWVISMGSC 111 (183)
T ss_pred EEEEEeCCCc---cc---hHHHHHHHHHcCcCCeEEEEecc
Confidence 6666777754 12 4444444444444 778887763
No 419
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=26.38 E-value=1.3e+02 Score=25.58 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|++.|.+.+.-..+.....+...-...+++++. |+-...-....+..++++|.| .+.+.|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~ 84 (548)
T PRK08978 5 QWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD 84 (548)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH
Q ss_pred HHHcCCCeEec
Q psy16939 120 ASSLGVPVLGV 130 (174)
Q Consensus 120 al~~g~P~i~v 130 (174)
|...++|+|++
T Consensus 85 A~~~~~Pvl~i 95 (548)
T PRK08978 85 ALLDSVPVVAI 95 (548)
T ss_pred HhhcCCCEEEE
No 420
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=26.35 E-value=1.6e+02 Score=20.08 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=36.4
Q ss_pred CCccEEEecCChhhHHHHHHcCCC-eEecc--ccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhcC
Q psy16939 103 PNLRLFITHGGISSLMEASSLGVP-VLGVP--FFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLND 172 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~g~P-~i~vP--~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 172 (174)
+-.-+++..+|++.+.......-. ...-+ ........+...+..|+- ...-+..+.++|.+++++.+..
T Consensus 74 ~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-~~~v~~~~~~el~~al~~a~~~ 145 (153)
T PF02775_consen 74 PVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIK-GARVTTPDPEELEEALREALES 145 (153)
T ss_dssp SEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSE-EEEESCHSHHHHHHHHHHHHHS
T ss_pred eEEEEEEeCCcceEeccccccCcCcccccccccccccCCHHHHHHHcCCc-EEEEccCCHHHHHHHHHHHHhC
Confidence 334456677776665554221111 11011 112334555666666766 3222333559999999998854
No 421
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=26.21 E-value=1.7e+02 Score=24.99 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
+.+.+...++|+|++..|.... .. .+++.+..+.++.+|+-...
T Consensus 199 ~~~~L~~AkrPvi~~G~g~~~~---~a---~~~l~~lae~~~~pv~tt~~ 242 (554)
T TIGR03254 199 AVELLKDAKRPLILLGKGAAYA---QA---DEEIREFVEKTGIPFLPMSM 242 (554)
T ss_pred HHHHHHhCCCCEEEECCCcccc---Ch---HHHHHHHHHHHCCCEEEcCC
Confidence 4455666667888877777632 12 33444444555777775443
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.12 E-value=45 Score=22.62 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCc-EEEEecCCC-CccccccCCCCCEEEeecCCchhhhcCCCccEEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLP-IFWKIDITN-DPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFI 109 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~-~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I 109 (174)
++++++..|.. .+.++..|...+.+ +.+..+..+ ..++.+.....++...+|-.....+ ..+|++|
T Consensus 13 ~~vlviGaGg~----------ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~--~~~DivI 80 (135)
T PF01488_consen 13 KRVLVIGAGGA----------ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEAL--QEADIVI 80 (135)
T ss_dssp SEEEEESSSHH----------HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHH--HTESEEE
T ss_pred CEEEEECCHHH----------HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHH--hhCCeEE
Confidence 56777776666 55678888888886 555444311 1212111123467788876666677 6799999
Q ss_pred ecCChh
Q psy16939 110 THGGIS 115 (174)
Q Consensus 110 ~hgG~~ 115 (174)
+--+.+
T Consensus 81 ~aT~~~ 86 (135)
T PF01488_consen 81 NATPSG 86 (135)
T ss_dssp E-SSTT
T ss_pred EecCCC
Confidence 987654
No 423
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=26.06 E-value=3.2e+02 Score=25.98 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=57.0
Q ss_pred cccccCccccCCccccCChH-------------HHHHHHhcC---CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 2 VSVLNRAVKLCSMCFIDGLS-------------DLQQRADAA---KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
+.+||.+..+...-+..+|. -+++++... ++.+.++-.||.... ..-+.+.++|.-+|.
T Consensus 722 ~dvLPTGRNfys~Dp~~iPT~aAw~~G~~lAe~ll~~y~~e~G~yPe~va~~lWgt~tmR-----t~G~~iAqiL~LlGV 796 (1100)
T PRK12321 722 SDVLPTGRNLFTVDPRAVPTRAAHALGVKAAEELLRRHLQDHGDWPRGLVMDLWGSATLR-----TGGEEFAMALALMGV 796 (1100)
T ss_pred CCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEchHhhh-----hCCHHHHHHHHHcCC
Confidence 35666666666655554441 233344433 377888888887652 224556777777898
Q ss_pred cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 66 PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
+=+|-.+..... .+.+ +|.. .|..|+.|+++.=.|.
T Consensus 797 rPvwd~~~grV~---------g~ei---IPl~-eLgRPRIDVtvriSG~ 832 (1100)
T PRK12321 797 RPVWDHASGRVT---------GIEV---LPLA-LLDRPRIDVTLRVSGL 832 (1100)
T ss_pred cccccCCCCccc---------ceEE---eCHH-HcCCCCeeEEEEecch
Confidence 878854322222 1222 3444 4567999999999984
No 424
>PLN00011 cysteine synthase
Probab=25.94 E-value=3.3e+02 Score=21.48 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=34.7
Q ss_pred ccEEEecCChhh----HHHHHHcCCCeEec-cccchHHHHHHHHHHcCceeEecCCC
Q psy16939 105 LRLFITHGGISS----LMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 105 ~~~~I~hgG~~t----~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
++-+|+..+.|+ .+-|-..|.|..++ |.... ..+...++..|+-+.+-..+
T Consensus 69 ~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 69 KSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMS-LERRIILRALGAEVHLTDQS 124 (323)
T ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Confidence 555666554443 34556689998766 87665 47888999999988865443
No 425
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.91 E-value=96 Score=24.69 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCCccEEEecCChhhHHHHHH---cCCCeEeccc
Q psy16939 102 HPNLRLFITHGGISSLMEASS---LGVPVLGVPF 132 (174)
Q Consensus 102 ~~~~~~~I~hgG~~t~~eal~---~g~P~i~vP~ 132 (174)
.-..|.+|.=||-+|..-|.. +|+|++.+|-
T Consensus 90 ~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPk 123 (317)
T cd00763 90 KHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPG 123 (317)
T ss_pred HcCCCEEEEECCchHHHHHHHHHHcCCCEEEecc
Confidence 357999999999999877744 5999999996
No 426
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=25.88 E-value=76 Score=23.15 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=19.0
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCC
Q psy16939 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDIT 74 (174)
Q Consensus 35 v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~ 74 (174)
|++-.|+... -....++.+.+. .+. ++++..|.-
T Consensus 78 illVeG~VT~---~m~~~l~~~~e~---~p~pK~VIAvGaC 112 (181)
T PRK14817 78 LLMVVGTVNC---KQAPILQRVYEQ---MADPKWVMAFGVC 112 (181)
T ss_pred EEEEEecCCc---cchHHHHHHHHH---cccCCEEEEeccc
Confidence 7777788754 123334444443 333 678877763
No 427
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.87 E-value=96 Score=24.73 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=25.8
Q ss_pred CCccEEEecCChhhHHHHHH---cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS---LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~---~g~P~i~vP~ 132 (174)
-..|.+|.=||.+|..-+.. +++|++.+|-
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPk 124 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPG 124 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHHhcCCcEEEecc
Confidence 57999999999999877754 5999999996
No 428
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=25.85 E-value=52 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=26.0
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhC-----CCcEEEEecCCC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQL-----KLPIFWKIDITN 75 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~ 75 (174)
.+++|+.|+... ..-..+..++....+. ...++|.++...
T Consensus 3 ~vvlvAGG~GIt---~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~ 47 (156)
T PF08030_consen 3 NVVLVAGGSGIT---PILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD 47 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHHHTT-----EEEEEEEES-TT
T ss_pred EEEEEecCcCHH---HHHHHHHHHHHhhccccccccceEEEEeeCchh
Confidence 478888888765 2345677777766511 237999998754
No 429
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.73 E-value=1.2e+02 Score=26.07 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCccEEEecCChhh------HHHHHHcCCCeEecc
Q psy16939 103 PNLRLFITHGGISS------LMEASSLGVPVLGVP 131 (174)
Q Consensus 103 ~~~~~~I~hgG~~t------~~eal~~g~P~i~vP 131 (174)
.+..++++|.|-|. +++|...++|+|++.
T Consensus 76 g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 76 GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 45778888877554 678999999999994
No 430
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.73 E-value=2.9e+02 Score=24.03 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecC---Cchh
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWY---PQTD 98 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~---p~~~ 98 (174)
..+.+...++|+|++..|.... +..+++.+..+.++.+|+-...+.. +++ ..|-++-..++. +-..
T Consensus 217 ~~~~L~~AkrPvI~~G~g~~~~------~a~~~l~~lae~l~~pV~tt~~gkg~~p~----~hpl~~G~~G~~g~~~~~~ 286 (616)
T PRK07418 217 ALKLIEEAERPLLYVGGGAISA------GAHAELKELAERFQIPVTTTLMGKGAFDE----HHPLSVGMLGMHGTAYANF 286 (616)
T ss_pred HHHHHHhCCCCEEEECCCcCcc------cHHHHHHHHHHHHCCCEEEccCCCcCCCC----CCcccccCCCCCCCHHHHH
Confidence 3345666667878777766421 2244455555566788775544322 221 222222222222 2334
Q ss_pred hhcCCCccEEEecCC
Q psy16939 99 ILAHPNLRLFITHGG 113 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG 113 (174)
.+ ..+|++|.=|-
T Consensus 287 ~l--~~aDlvL~vG~ 299 (616)
T PRK07418 287 AV--TECDLLIAVGA 299 (616)
T ss_pred HH--HhCCEEEEEcC
Confidence 55 56899887774
No 431
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.65 E-value=2.6e+02 Score=24.08 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CCccccccCCCCCEEEeecCC---ch
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-NDPVLNAKTLPDNVFIQKWYP---QT 97 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~nv~~~~~~p---~~ 97 (174)
+..+++...++|+|++..|.... ...+++.+..+..+.+|+-...+. .+++ ..|.++-..+... ..
T Consensus 206 ~~~~~L~~A~rPvIl~G~g~~~~------~a~~~l~~lae~~~~PV~tt~~~kg~~p~----~hp~~~G~~G~~~~~~~~ 275 (570)
T PRK06725 206 EVAKAISKAKRPLLYIGGGVIHS------GGSEELIEFARENRIPVVSTLMGLGAYPP----GDPLFLGMLGMHGTYAAN 275 (570)
T ss_pred HHHHHHHcCCCcEEEECCCcccc------chHHHHHHHHHHhCCCEEECCccCcCCCC----CChhhcCCCCCCCCHHHH
Confidence 45556666667777777766432 224445555555677777543332 2221 2222222222221 23
Q ss_pred hhhcCCCccEEEecCC
Q psy16939 98 DILAHPNLRLFITHGG 113 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG 113 (174)
.++ ..+|++|.=|-
T Consensus 276 ~~l--~~aDlil~vG~ 289 (570)
T PRK06725 276 MAV--TECDLLLALGV 289 (570)
T ss_pred HHH--HhCCEEEEeCC
Confidence 455 56888887764
No 432
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=25.64 E-value=4.2e+02 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.4
Q ss_pred CCccEEEecCChhhHHHHHHc-----------CCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASSL-----------GVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~-----------g~P~i~vP~ 132 (174)
...|.+|.=||-||++|.+.. .+|+-+||.
T Consensus 167 ~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 167 SKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecC
Confidence 457999999999999998641 468888895
No 433
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=25.39 E-value=50 Score=24.74 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred ccEEEecCChhhHHHHHHcCCC
Q psy16939 105 LRLFITHGGISSLMEASSLGVP 126 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P 126 (174)
.-++|+|||...+.=+...|.|
T Consensus 176 ~vlvVsHg~~ir~ll~~~lg~~ 197 (230)
T PRK14117 176 NVFVGAHGNSIRALVKHIKGLS 197 (230)
T ss_pred EEEEEeChHHHHHHHHHHhCcC
Confidence 4589999998888777777766
No 434
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=25.35 E-value=1e+02 Score=24.67 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=25.6
Q ss_pred CCccEEEecCChhhHHHHHH---cCCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASS---LGVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~---~g~P~i~vP~ 132 (174)
-..|.+|.=||.+|..-|.. .|+|++.+|-
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPk 125 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLADKGLPVVGVPK 125 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHhcCCCEEeecc
Confidence 57899999999999877744 5999999996
No 435
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=25.32 E-value=4.3e+02 Score=22.53 Aligned_cols=79 Identities=10% Similarity=-0.055 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEe-ecCC---ch
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQ-KWYP---QT 97 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~-~~~p---~~ 97 (174)
..+.+...++|+|++..|.... ...+++.+..++++.+|+-...+.. +++ ..|.++=.. .+.. -.
T Consensus 198 a~~~L~~AkrPvil~G~g~~~~------~a~~~l~~lae~~~~pv~tt~~gkg~~~~----~hpl~lG~~~g~~~~~~~~ 267 (539)
T TIGR03393 198 AENKLAMAKRVSLLADFLALRH------GLKHALQKWVKEVPMPHATLLMGKGILDE----QQAGFYGTYSGSASTGAVK 267 (539)
T ss_pred HHHHHHhCCCCEEEeChhhccc------ChHHHHHHHHHHhCCCEEECcccCccccC----cCCCeEEEEeCCCCCHHHH
Confidence 4456666667777776655422 1244455555556778776554432 331 333333222 2222 23
Q ss_pred hhhcCCCccEEEecCC
Q psy16939 98 DILAHPNLRLFITHGG 113 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG 113 (174)
.++ ..+|++|.=|.
T Consensus 268 ~~~--~~aDlvl~lG~ 281 (539)
T TIGR03393 268 EAI--EGADAVICVGV 281 (539)
T ss_pred HHH--hhCCEEEEECC
Confidence 455 67999998875
No 436
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=25.18 E-value=2.4e+02 Score=23.13 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=47.9
Q ss_pred hHHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchh
Q psy16939 20 LSDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD 98 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ 98 (174)
-+++.++....+ ++..+|+-.+.. ....++.+.+.|+..+..+.+...-..-|.+ ..-..-..
T Consensus 17 l~~l~~~~~~~g~~r~liVTd~~~~-----~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~-----------~~v~~~~~ 80 (377)
T COG1454 17 LKELGEEVKRLGAKRALIVTDRGLA-----KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI-----------ETVEAGAE 80 (377)
T ss_pred HHHHHHHHHhcCCCceEEEECCccc-----cchhHHHHHHHHHhcCCeEEEecCCCCCCCH-----------HHHHHHHH
Confidence 456777777655 677777776653 4667999999998888544443221111100 00000112
Q ss_pred hhcCCCccEEEecCChhhHHHH
Q psy16939 99 ILAHPNLRLFITHGGISSLMEA 120 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t~~ea 120 (174)
.+...++|.+|.=||. |.+++
T Consensus 81 ~~~~~~~D~iIalGGG-S~~D~ 101 (377)
T COG1454 81 VAREFGPDTIIALGGG-SVIDA 101 (377)
T ss_pred HHHhcCCCEEEEeCCc-cHHHH
Confidence 2333679999999985 55544
No 437
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.18 E-value=2.2e+02 Score=23.94 Aligned_cols=72 Identities=19% Similarity=0.102 Sum_probs=46.6
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC--C-------ccccccCCCCCEEEeecCCchhhhcCC
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN--D-------PVLNAKTLPDNVFIQKWYPQTDILAHP 103 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~--~-------~~~~~~~~~~nv~~~~~~p~~~~l~~~ 103 (174)
+++++..||... .+.+.-.+....+++.+=+|.+.-+. + .++.+ .....+++....+....| .
T Consensus 5 KI~iIGgGSt~t-----p~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~-~~g~~~kv~~ttd~~eAl--~ 76 (442)
T COG1486 5 KIVIIGGGSTYT-----PKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVE-EAGAPVKVEATTDRREAL--E 76 (442)
T ss_pred eEEEECCCcccc-----HHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHH-hhCCCeEEEEecCHHHHh--c
Confidence 578888888864 44455555555566666666665322 1 11111 233348888889999999 7
Q ss_pred CccEEEecC
Q psy16939 104 NLRLFITHG 112 (174)
Q Consensus 104 ~~~~~I~hg 112 (174)
.||.+|++-
T Consensus 77 gAdfVi~~~ 85 (442)
T COG1486 77 GADFVITQI 85 (442)
T ss_pred CCCEEEEEE
Confidence 899999974
No 438
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.17 E-value=1.8e+02 Score=21.58 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=26.4
Q ss_pred CchhhhcCCCccEEEecCChhh--HHHHH-H-cCCCeEecccc
Q psy16939 95 PQTDILAHPNLRLFITHGGISS--LMEAS-S-LGVPVLGVPFF 133 (174)
Q Consensus 95 p~~~~l~~~~~~~~I~hgG~~t--~~eal-~-~g~P~i~vP~~ 133 (174)
+...+++ -+-|++|...+... ..+.+ . .|+|++.++..
T Consensus 66 n~E~i~~-l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIAA-LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHHh-cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 4444554 68999998776554 45555 3 88999999754
No 439
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=25.16 E-value=2.9e+02 Score=20.48 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=13.1
Q ss_pred CCccEEEe-cCChhhHHHH
Q psy16939 103 PNLRLFIT-HGGISSLMEA 120 (174)
Q Consensus 103 ~~~~~~I~-hgG~~t~~ea 120 (174)
..+|++|. -||.||.-|.
T Consensus 109 ~~ada~V~~pGG~GTleEl 127 (205)
T COG1611 109 RSADAFIVLPGGFGTLEEL 127 (205)
T ss_pred HhCCEEEEeCCCcchHHHH
Confidence 56887765 6778988665
No 440
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.93 E-value=2.3e+02 Score=19.33 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=39.4
Q ss_pred ccCCccccCChHHHHHHHhcCCCCeEE--EEcCCCcCCCCCCHHHHHHHHHHHhhCCCc
Q psy16939 10 KLCSMCFIDGLSDLQQRADAAKGGFVY--MSFGSVVDPTKLSEETKLGFLEVFKQLKLP 66 (174)
Q Consensus 10 ~~~g~~~~~~~~~~~~~~~~~~~~~v~--vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~ 66 (174)
-+.+|.....|+++.+|+.....|+.+ -+||.... .+++.+.++++.+.+..-.
T Consensus 9 ivlapsa~vsp~elv~~l~~~~~PvtiKeTCfGaii~---G~Ed~v~klveriR~~d~~ 64 (142)
T COG4029 9 IVLAPSAGVSPKELVQKLLELSPPVTIKETCFGAIID---GPEDEVRKLVERIRELDGN 64 (142)
T ss_pred EEEcCccCcChHHHHHHHHhcCCCeEeeeeeeeeeec---CcHHHHHHHHHHHHHhccC
Confidence 345666677899999999887744332 25777765 5788899999988887653
No 441
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=24.91 E-value=3.2e+02 Score=20.96 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=12.3
Q ss_pred HHHHHHHHhhCCCcEEEEec
Q psy16939 53 KLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~ 72 (174)
+.+..+++++.+..++....
T Consensus 13 ~~e~~~aL~~lG~ev~~v~~ 32 (248)
T PLN02832 13 FNEHIAALRRLGVEAVEVRK 32 (248)
T ss_pred hHHHHHHHHHCCCcEEEeCC
Confidence 44556777777766555443
No 442
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=24.89 E-value=3.7e+02 Score=21.60 Aligned_cols=102 Identities=9% Similarity=0.030 Sum_probs=55.1
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC-CcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK-LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
++.++.+|.++. ..+.++.+.+ ..++..+....... ....+.+....+...++ ..+|+++..
T Consensus 5 RVgIVG~GnIGr----------~~a~al~~~pd~ELVgV~dr~~~~~-----~~~~~~v~~~~d~~e~l--~~iDVViIc 67 (324)
T TIGR01921 5 RAAIVGYGNLGR----------SVEKAIQQQPDMELVGVFSRRGAET-----LDTETPVYAVADDEKHL--DDVDVLILC 67 (324)
T ss_pred EEEEEeecHHHH----------HHHHHHHhCCCcEEEEEEcCCcHHH-----HhhcCCccccCCHHHhc--cCCCEEEEc
Confidence 577788877742 2345555553 46655544332111 11122222223333444 789999876
Q ss_pred CC----hhhHHHHHHcCCCeEec-cccc---hHHHHHHHHHHc--CceeE
Q psy16939 112 GG----ISSLMEASSLGVPVLGV-PFFG---DQYRNMVLLRHR--GYALI 151 (174)
Q Consensus 112 gG----~~t~~eal~~g~P~i~v-P~~~---dQ~~na~~l~~~--G~g~~ 151 (174)
++ .-...+++.+|+.+|.- |.+. +-+..-...++. ++++.
T Consensus 68 tPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi 117 (324)
T TIGR01921 68 MGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVI 117 (324)
T ss_pred CCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 65 35677889999999887 3322 223344444443 55553
No 443
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.81 E-value=3.4e+02 Score=21.16 Aligned_cols=38 Identities=24% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHHHHcCCCeEec-cccchHHHHHHHHHHcCceeEecCC
Q psy16939 117 LMEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 117 ~~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~~l~~~ 155 (174)
.+-|-..|+|..++ |...++ .+...++..|+-+++-..
T Consensus 79 A~~a~~~G~~~~i~~p~~~~~-~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 79 AMIAAIKGYRMKLIMPENMSQ-ERRAAMRAYGAELILVPK 117 (296)
T ss_pred HHHHHHcCCCEEEEECCCCCH-HHHHHHHHcCCEEEEeCC
Confidence 34445678888766 765554 466788888888886543
No 444
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.70 E-value=2.9e+02 Score=20.27 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCCCcEEEEe
Q psy16939 53 KLGFLEVFKQLKLPIFWKI 71 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~ 71 (174)
+..+.+++++.+..+.+..
T Consensus 12 ~~s~~~al~~~g~~~~~v~ 30 (192)
T PRK13142 12 ISNVKRAIEHLGYEVVVSN 30 (192)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 6777888888887776653
No 445
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=24.68 E-value=3.4e+02 Score=23.09 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=44.4
Q ss_pred cCCchhhhcC-CCccEEEec---CChhhHH-HHHHcCCC----eEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHH
Q psy16939 93 WYPQTDILAH-PNLRLFITH---GGISSLM-EASSLGVP----VLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFL 163 (174)
Q Consensus 93 ~~p~~~~l~~-~~~~~~I~h---gG~~t~~-eal~~g~P----~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~ 163 (174)
.+|+.+++++ ..||+.+-. -|+|.+. |-+++..| ++++..+ |-..+.++-++.+++ .+.+++.
T Consensus 339 ~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSef------AGaA~~L~~AllVNP--~d~~~~A 410 (474)
T PRK10117 339 HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQF------AGAANELTSALIVNP--YDRDEVA 410 (474)
T ss_pred CCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecc------cchHHHhCCCeEECC--CCHHHHH
Confidence 4666654432 678887754 4888654 77766553 3444432 222333344677754 4788999
Q ss_pred HHHHHhhcCC
Q psy16939 164 KNAQTMLNDP 173 (174)
Q Consensus 164 ~al~~ll~~~ 173 (174)
++|.+.|+.+
T Consensus 411 ~Ai~~AL~Mp 420 (474)
T PRK10117 411 AALDRALTMP 420 (474)
T ss_pred HHHHHHHcCC
Confidence 9998888654
No 446
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=24.56 E-value=1.6e+02 Score=23.33 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=35.3
Q ss_pred ChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 19 GLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
.|+.+++ ++..+ .|++.-||...|. +|.-.+..+.+++++.+.+++..++
T Consensus 174 ~p~vl~A-I~~AD--~IVlGPgsp~TSI-~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 174 APEVLEA-IEDAD--LVIIGPSNPVTSI-GPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CHHHHHH-HHhCC--EEEECCCccHHHh-hhhccchhHHHHHHhCCCCEEEEcC
Confidence 3444444 44444 8999999887654 5667789999999998887776653
No 447
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=24.52 E-value=1.3e+02 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=19.4
Q ss_pred cEEEecCChhhHHH-------HHHcCCCeEecccc
Q psy16939 106 RLFITHGGISSLME-------ASSLGVPVLGVPFF 133 (174)
Q Consensus 106 ~~~I~hgG~~t~~e-------al~~g~P~i~vP~~ 133 (174)
|++|.=||. ++.+ ....|+|.+.+|..
T Consensus 90 d~IVaiGGG-~v~D~ak~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 90 EPVLAIGGG-VLTDVAGLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred CEEEEECCc-HHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 999988884 2222 14569999999984
No 448
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.45 E-value=2.6e+02 Score=19.71 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCC-C---------------HHHHHHHHHHHhhCCCcEEEEec
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKL-S---------------EETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~-~---------------~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
..+.+++...+...|++++|+-...... . .+.++.+++.+...+.++++...
T Consensus 49 ~~~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 49 EKLKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 4455665544447888888886532100 0 12345566666655678777643
No 449
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=24.08 E-value=3.2e+02 Score=20.63 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=37.3
Q ss_pred cEEEecCChhhHHHHHHcCCCeEeccccchH--------------------HHHHHHHHHcCceeEecCCCCCHHHHHHH
Q psy16939 106 RLFITHGGISSLMEASSLGVPVLGVPFFGDQ--------------------YRNMVLLRHRGYALIEPIQTLTKQSFLKN 165 (174)
Q Consensus 106 ~~~I~hgG~~t~~eal~~g~P~i~vP~~~dQ--------------------~~na~~l~~~G~g~~l~~~~~~~~~l~~a 165 (174)
.+++---...-+..|..+|++.|.+...... ...+..+.+.|+-.+++ +..+|...
T Consensus 178 e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~----~~~~l~~~ 253 (267)
T PRK13478 178 ACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVID----TIADLPAV 253 (267)
T ss_pred ceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeehh----hHHHHHHH
Confidence 3444444556788888999999999764321 11346677788888875 45555555
Q ss_pred HHH
Q psy16939 166 AQT 168 (174)
Q Consensus 166 l~~ 168 (174)
++.
T Consensus 254 l~~ 256 (267)
T PRK13478 254 IAD 256 (267)
T ss_pred HHH
Confidence 543
No 450
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=24.07 E-value=3.9e+02 Score=21.64 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=51.8
Q ss_pred eEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC-cEEEEecCCCCccccccCCCCCEEEee--------c-----------
Q psy16939 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL-PIFWKIDITNDPVLNAKTLPDNVFIQK--------W----------- 93 (174)
Q Consensus 34 ~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~----------- 93 (174)
+++...||.+. ......+.+.|.+.++ ++.|.......++..-....-.++..+ .
T Consensus 3 ivl~~gGTGGH-----v~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T COG0707 3 IVLTAGGTGGH-----VFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLL 77 (357)
T ss_pred EEEEeCCCccc-----hhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHH
Confidence 44444444433 4557888899999888 688875543332210000000011111 0
Q ss_pred ---CCchhhhcCCCccEEEecCChhhH---HHHHHcCCCeEeccc
Q psy16939 94 ---YPQTDILAHPNLRLFITHGGISSL---MEASSLGVPVLGVPF 132 (174)
Q Consensus 94 ---~p~~~~l~~~~~~~~I~hgG~~t~---~eal~~g~P~i~vP~ 132 (174)
..-..++..-+-|++|+-||+-|. ..+...|+|+++.=+
T Consensus 78 ~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq 122 (357)
T COG0707 78 KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ 122 (357)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEec
Confidence 011123334578999999997664 566778999888743
No 451
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.01 E-value=9.4 Score=18.03 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=11.5
Q ss_pred ChhhHHHHHHcCCCeEe
Q psy16939 113 GISSLMEASSLGVPVLG 129 (174)
Q Consensus 113 G~~t~~eal~~g~P~i~ 129 (174)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56777778887777653
No 452
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=23.96 E-value=3.1e+02 Score=20.43 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=10.7
Q ss_pred HHHHHHcCCCeEeccc
Q psy16939 117 LMEASSLGVPVLGVPF 132 (174)
Q Consensus 117 ~~eal~~g~P~i~vP~ 132 (174)
+.+++..|+|++.+=.
T Consensus 71 l~~~~~~g~pvlgIC~ 86 (227)
T TIGR01737 71 VREFAEKGVPVLGICN 86 (227)
T ss_pred HHHHHHcCCEEEEECH
Confidence 4466667888877743
No 453
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=23.91 E-value=69 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=18.8
Q ss_pred ccEEEecCChhhHHHHHHcCCCe
Q psy16939 105 LRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
..++|+|||...+.-+...|.|.
T Consensus 234 ~vLVVsHGgvIR~ll~~lLglp~ 256 (299)
T PTZ00122 234 VEIIVCHGNVIRYLVCRALQLPP 256 (299)
T ss_pred eEEEEeCChHHHHHHHHHhCcCH
Confidence 34899999998888888888664
No 454
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=23.91 E-value=1.1e+02 Score=25.14 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=36.2
Q ss_pred cCCchhhhcCCCccEEEecCC------------hhhHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE
Q psy16939 93 WYPQTDILAHPNLRLFITHGG------------ISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI 151 (174)
Q Consensus 93 ~~p~~~~l~~~~~~~~I~hgG------------~~t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~ 151 (174)
++...+.+ ..+|++||-=| .+...-|-.+++|++++-=.- ..+...+.+.|+.-+
T Consensus 274 ~~~l~~~l--~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v--~~~~~~~~~~g~~a~ 340 (375)
T TIGR00045 274 LLDLEQKI--KDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSL--GDGVDVLPQHGIDAA 340 (375)
T ss_pred hhCHHHHh--cCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEeccc--CCChHHHHhcCccEE
Confidence 45666777 77999999888 555666778899999984211 112334555666544
No 455
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.74 E-value=2.3e+02 Score=19.89 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=24.0
Q ss_pred chhhhcCCCccEEEecCChhh--HHHHH-HcCCCeEeccc
Q psy16939 96 QTDILAHPNLRLFITHGGISS--LMEAS-SLGVPVLGVPF 132 (174)
Q Consensus 96 ~~~~l~~~~~~~~I~hgG~~t--~~eal-~~g~P~i~vP~ 132 (174)
...+++ -+-|++|..++.+. ..+.+ ..|+|.+.++.
T Consensus 62 ~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 62 VELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 334444 68899988765543 44443 68999999975
No 456
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.72 E-value=4.5e+02 Score=22.20 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccc-cCCCCCEEEee-cCCchhhhcCCCccEEE
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNA-KTLPDNVFIQK-WYPQTDILAHPNLRLFI 109 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~nv~~~~-~~p~~~~l~~~~~~~~I 109 (174)
+++.++.+|-.+. .+++.|.+.+..+.+.-.....+.... .....++.+.. ..+. .-+ ..+|++|
T Consensus 8 ~kv~V~GLG~sG~----------a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~~--~~~d~vV 74 (448)
T COG0771 8 KKVLVLGLGKSGL----------AAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD-EDL--AEFDLVV 74 (448)
T ss_pred CEEEEEecccccH----------HHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccch-hcc--ccCCEEE
Confidence 5788999988853 467888888988877654433211000 01123333322 2222 223 6799999
Q ss_pred ecCChhh----HHHHHHcCCCeEe
Q psy16939 110 THGGISS----LMEASSLGVPVLG 129 (174)
Q Consensus 110 ~hgG~~t----~~eal~~g~P~i~ 129 (174)
-..|.-- +.+|...|+|++.
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEe
Confidence 9999654 4458899999774
No 457
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=23.66 E-value=4.3e+02 Score=21.97 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcC---CCccEEEecCChhhHH----HHHHcCC
Q psy16939 53 KLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAH---PNLRLFITHGGISSLM----EASSLGV 125 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~---~~~~~~I~hgG~~t~~----eal~~g~ 125 (174)
-..+.+++.+.+.+++...+.....-. .........+..+...++.. .+.|++|+..+.-... +....|+
T Consensus 14 e~al~~~l~~~g~~v~~~~~~~Npg~~---~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~~~~~~~l~~~Gi 90 (435)
T PRK06395 14 EDAIARAIKRSGAILFSVIGHENPSIK---KLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLATPLVNNLLKRGI 90 (435)
T ss_pred HHHHHHHHHhCCCeEEEEECCCChhhh---hcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHHHHHHHHHHHCCC
Confidence 556777888888766665543221100 12223333333454544432 5689999977643322 2234599
Q ss_pred CeEeccccchHHHHH-----HHHHHcCcee
Q psy16939 126 PVLGVPFFGDQYRNM-----VLLRHRGYAL 150 (174)
Q Consensus 126 P~i~vP~~~dQ~~na-----~~l~~~G~g~ 150 (174)
|++.-+....|..+. ..+.++|+-.
T Consensus 91 ~v~gps~~~a~~e~dK~~~k~~l~~~gIpt 120 (435)
T PRK06395 91 KVASPTMEAAMIETSKMFMRYLMERHNIPG 120 (435)
T ss_pred cEECCCHHHHHHhhCHHHHHHHHHHCCcCC
Confidence 988765544333332 3344555543
No 458
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.62 E-value=2.9e+02 Score=19.98 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=8.4
Q ss_pred CChHHHHHHHhcC
Q psy16939 18 DGLSDLQQRADAA 30 (174)
Q Consensus 18 ~~~~~~~~~~~~~ 30 (174)
.++..+..|++..
T Consensus 83 ~~~~~lk~fld~~ 95 (200)
T PRK03767 83 NMAGQMRNFLDQT 95 (200)
T ss_pred CchHHHHHHHHHh
Confidence 5666777777653
No 459
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=23.48 E-value=56 Score=23.63 Aligned_cols=24 Identities=38% Similarity=0.611 Sum_probs=19.0
Q ss_pred CccEEEecCChhhHHHHHHcCCCe
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
.--++|+|||...+.-+...|.|.
T Consensus 142 ~~iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 142 QNLLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 356799999988888777778764
No 460
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=23.30 E-value=93 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCccEEEecCChhhHHHHHHc--------CCCeEeccc
Q psy16939 103 PNLRLFITHGGISSLMEASSL--------GVPVLGVPF 132 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~~eal~~--------g~P~i~vP~ 132 (174)
...|.+|.-||-||+.|.+.. ..|+-++|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 457899999999999998632 246888895
No 461
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=23.28 E-value=3e+02 Score=20.09 Aligned_cols=70 Identities=9% Similarity=-0.049 Sum_probs=39.4
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEe--ecCCch---hhhc-----
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQ--KWYPQT---DILA----- 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~--~~~p~~---~~l~----- 101 (174)
.+.++|+.|+... -..+++.+.+.+++++...... .. ..+.++... +..+.. .++.
T Consensus 8 ~k~vlItGas~~i--------G~~la~~l~~~G~~v~~~~~~~-~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 8 GKTVWVTGAAQGI--------GYAVALAFVEAGAKVIGFDQAF-LT-----QEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred CCEEEEeCCCchH--------HHHHHHHHHHCCCEEEEEecch-hh-----hcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3678888877653 4556666777788887766543 11 122233322 222211 1111
Q ss_pred CCCccEEEecCChh
Q psy16939 102 HPNLRLFITHGGIS 115 (174)
Q Consensus 102 ~~~~~~~I~hgG~~ 115 (174)
++..|++|+.+|..
T Consensus 74 ~~~id~vi~~ag~~ 87 (252)
T PRK08220 74 TGPLDVLVNAAGIL 87 (252)
T ss_pred cCCCCEEEECCCcC
Confidence 14589999999864
No 462
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=23.22 E-value=2.9e+02 Score=20.04 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEee--cCCchhhhc-------
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQK--WYPQTDILA------- 101 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~--~~p~~~~l~------- 101 (174)
.+.++|+.|+... -..+++.|.+.++.++....... ..+... ..+.++.+.. ..+...+..
T Consensus 6 ~~~vlItGa~g~i--------G~~la~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 6 GRKALVTGASGGI--------GEEIARLLHAQGAIVGLHGTRVEKLEALAA-ELGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CCEEEEECCCChH--------HHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-HhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4688888887753 44456666667776554333211 111101 1223343332 222222110
Q ss_pred -CCCccEEEecCChh
Q psy16939 102 -HPNLRLFITHGGIS 115 (174)
Q Consensus 102 -~~~~~~~I~hgG~~ 115 (174)
....|.+|+.+|..
T Consensus 77 ~~~~id~vi~~ag~~ 91 (245)
T PRK12936 77 DLEGVDILVNNAGIT 91 (245)
T ss_pred HcCCCCEEEECCCCC
Confidence 25689999999864
No 463
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=23.20 E-value=4.3e+02 Score=21.79 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEe-------ecCCchhhhc---CCCccEEEecCChhh-----H
Q psy16939 53 KLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQ-------KWYPQTDILA---HPNLRLFITHGGISS-----L 117 (174)
Q Consensus 53 ~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~-------~~~p~~~~l~---~~~~~~~I~hgG~~t-----~ 117 (174)
...+++++.+.|++++............. ...+..... .|.+...++. ...+|+++.-.|.-+ .
T Consensus 14 a~~i~~aa~~~G~~vv~~~~~~d~~a~~~-~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~ 92 (451)
T PRK08591 14 ALRIIRACKELGIKTVAVHSTADRDALHV-QLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFA 92 (451)
T ss_pred HHHHHHHHHHcCCeEEEEcChhhccCCCH-hHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHH
Confidence 56677888999998887655432211000 223343332 2333333332 246888887554222 1
Q ss_pred HHHHHcCCCeEeccc-----cchHHHHHHHHHHcCce
Q psy16939 118 MEASSLGVPVLGVPF-----FGDQYRNMVLLRHRGYA 149 (174)
Q Consensus 118 ~eal~~g~P~i~vP~-----~~dQ~~na~~l~~~G~g 149 (174)
..+-..|+|.+.-+. ..|-..--..++++|+-
T Consensus 93 ~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp 129 (451)
T PRK08591 93 EICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVP 129 (451)
T ss_pred HHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 233446887776432 22434444444555554
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.18 E-value=3e+02 Score=19.99 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=38.2
Q ss_pred hHHHHHHcCCCeEeccccchHHHHHHHHHHcCceeE-ecCCCCCHHHHHHHHHHhhcCC
Q psy16939 116 SLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALI-EPIQTLTKQSFLKNAQTMLNDP 173 (174)
Q Consensus 116 t~~eal~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~-l~~~~~~~~~l~~al~~ll~~~ 173 (174)
.+-|.+..++|.|..=..-........+.+.|--++ +++. +.+.+...+..+|.++
T Consensus 122 ~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 122 AVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLKGE 178 (179)
T ss_pred HHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhccC
Confidence 455677799997776443444455677777777777 6544 5668888888887654
No 465
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=22.98 E-value=3e+02 Score=26.78 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=56.7
Q ss_pred cccccCccccCCccccCChH-------------HHHHHHhcC---CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 2 VSVLNRAVKLCSMCFIDGLS-------------DLQQRADAA---KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
+.+||.+..+-+.-+..+|. =++++.... ++.+.++-.||... +..-+.+.++|.-+|.
T Consensus 910 pdvLPTGRN~ys~DP~~iPT~aAw~~G~~lA~~lL~~y~~e~G~yPe~ia~vLWgtdt~-----rt~Ge~iAqiL~LlGv 984 (1310)
T PRK12493 910 PAVLPTGRNIHALDPQSIPTAAAVAAGKRVVDELLERQREEQGAWPETIACVLWGTDNI-----KTYGEGLAQALALVGA 984 (1310)
T ss_pred CCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEchhhh-----hhCCHHHHHHHHHcCC
Confidence 35666666666665554442 123344332 37888888898765 2334556777777888
Q ss_pred cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 66 PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
+-+|-..+ . |.-+.-+|..+ |..|+.|++|+=.|.
T Consensus 985 rPvwd~~G-r------------V~g~elIPLee-LGRPRIDVvv~iSGi 1019 (1310)
T PRK12493 985 RPVPDELG-R------------VNKVELIPLEE-LGRPRIDVVVTCSGI 1019 (1310)
T ss_pred ccccCCCC-C------------ccceEEeCHHH-cCCCCeeEEEEecch
Confidence 87774321 1 11122255554 567999999999993
No 466
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.96 E-value=3.6e+02 Score=20.85 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=23.9
Q ss_pred HHHHHcCCCeEec-cccchHHHHHHHHHHcCceeEecCCC
Q psy16939 118 MEASSLGVPVLGV-PFFGDQYRNMVLLRHRGYALIEPIQT 156 (174)
Q Consensus 118 ~eal~~g~P~i~v-P~~~dQ~~na~~l~~~G~g~~l~~~~ 156 (174)
+-|-.+|.|..++ |....+. ....++..|+-+++...+
T Consensus 74 ~~a~~~Gl~~~i~vp~~~~~~-k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 74 MVAAARGYKLILTMPETMSIE-RRKLLKAYGAELVLTPGA 112 (298)
T ss_pred HHHHHcCCeEEEEeCCccCHH-HHHHHHHcCCEEEEECCC
Confidence 3445578887655 7655544 356777788877765544
No 467
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.74 E-value=4.1e+02 Score=21.41 Aligned_cols=75 Identities=9% Similarity=0.117 Sum_probs=45.3
Q ss_pred ecCCchhhhcCCCccEEEe------cCChhhHHHHHHcCCCeEec-cccchHHHHHHHH-HHcCceeEecCCCCCHHHHH
Q psy16939 92 KWYPQTDILAHPNLRLFIT------HGGISSLMEASSLGVPVLGV-PFFGDQYRNMVLL-RHRGYALIEPIQTLTKQSFL 163 (174)
Q Consensus 92 ~~~p~~~~l~~~~~~~~I~------hgG~~t~~eal~~g~P~i~v-P~~~dQ~~na~~l-~~~G~g~~l~~~~~~~~~l~ 163 (174)
.|-+..+++....++++.. +-+.-.+.+++.+||.+++= |+..++-.-...+ ++.|.=..+....-....++
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr 131 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVR 131 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHH
Confidence 3566777775566777765 24467788999999998876 8865444443333 34566655543222233444
Q ss_pred HHH
Q psy16939 164 KNA 166 (174)
Q Consensus 164 ~al 166 (174)
+.+
T Consensus 132 ~~i 134 (343)
T TIGR01761 132 RFI 134 (343)
T ss_pred HHH
Confidence 444
No 468
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=22.71 E-value=4.3e+02 Score=21.66 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEec
Q psy16939 32 GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITH 111 (174)
Q Consensus 32 ~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~h 111 (174)
+.+-+|.+|.++ ..+.+.+...|.+++..-. .... ...+ ..+.+..+++ ..||+++.|
T Consensus 117 ktvGIIG~G~IG----------~~va~~l~a~G~~V~~~Dp-~~~~------~~~~---~~~~~l~ell--~~aDiV~lh 174 (381)
T PRK00257 117 RTYGVVGAGHVG----------GRLVRVLRGLGWKVLVCDP-PRQE------AEGD---GDFVSLERIL--EECDVISLH 174 (381)
T ss_pred CEEEEECCCHHH----------HHHHHHHHHCCCEEEEECC-cccc------cccC---ccccCHHHHH--hhCCEEEEe
Confidence 345566666663 2345555556777655322 1111 0111 2345667777 679999988
Q ss_pred CChh
Q psy16939 112 GGIS 115 (174)
Q Consensus 112 gG~~ 115 (174)
.-.+
T Consensus 175 ~Plt 178 (381)
T PRK00257 175 TPLT 178 (381)
T ss_pred CcCC
Confidence 7653
No 469
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.71 E-value=1.8e+02 Score=24.99 Aligned_cols=77 Identities=6% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEee--------cCCchhhhcCCCccEEEecCC------hhhHHH
Q psy16939 54 LGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK--------WYPQTDILAHPNLRLFITHGG------ISSLME 119 (174)
Q Consensus 54 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~~l~~~~~~~~I~hgG------~~t~~e 119 (174)
+.+++.|++.+.+.++-..+.....+.+.-...++.++. |.=...-....+..++++|.| .+.+.+
T Consensus 12 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~ 91 (561)
T PRK06048 12 RAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIAT 91 (561)
T ss_pred HHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH
Q ss_pred HHHcCCCeEec
Q psy16939 120 ASSLGVPVLGV 130 (174)
Q Consensus 120 al~~g~P~i~v 130 (174)
|.+.++|+|++
T Consensus 92 A~~~~~Pvl~i 102 (561)
T PRK06048 92 AYMDSVPIVAL 102 (561)
T ss_pred HhhcCCCEEEE
No 470
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=22.69 E-value=3.3e+02 Score=20.31 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=31.4
Q ss_pred hhhHHHHHHcCCCeEeccccch--HHHHHHHHHHcCceeEecCCCCCHHHHHH
Q psy16939 114 ISSLMEASSLGVPVLGVPFFGD--QYRNMVLLRHRGYALIEPIQTLTKQSFLK 164 (174)
Q Consensus 114 ~~t~~eal~~g~P~i~vP~~~d--Q~~na~~l~~~G~g~~l~~~~~~~~~l~~ 164 (174)
..|...|+..|+|+.++|-..+ +..-...+-+.|+.... +.+++.+
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~-----~~~d~~~ 218 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT-----SAKDILE 218 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC-----CHHHHHH
Confidence 5677788999999999986433 44445666677976554 4565544
No 471
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=22.63 E-value=69 Score=21.62 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=37.3
Q ss_pred HHcCCCeEeccccchHHHHHHHHHHcCceeEec--------------CCCCCHHHHHHHHHHhhc
Q psy16939 121 SSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEP--------------IQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 121 l~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~--------------~~~~~~~~l~~al~~ll~ 171 (174)
++++.++-..|..+|.-.|+-|+.+ |....++ ..+.+.|++..+|+-+..
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~~ 123 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMAA 123 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHHh
Confidence 5788899999999999999999887 4333221 124688999999876643
No 472
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.55 E-value=1.7e+02 Score=21.10 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCccEEEecCChhhH--------------HHHHHcCCCeEeccccchHHH
Q psy16939 103 PNLRLFITHGGISSL--------------MEASSLGVPVLGVPFFGDQYR 138 (174)
Q Consensus 103 ~~~~~~I~hgG~~t~--------------~eal~~g~P~i~vP~~~dQ~~ 138 (174)
..+|.+|--||..+. .++...|+|++.+=. +.|..
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~-G~QlL 85 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCA-GMILL 85 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECH-HHHHH
Confidence 456777777776554 356677999988854 33443
No 473
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.44 E-value=3.2e+02 Score=23.41 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecCC---chh
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWYP---QTD 98 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~p---~~~ 98 (174)
+.+.+...++|+|++..|... .+..+++.+..+.++.+|+-...+.. .++ ..|.++-..+... ...
T Consensus 197 ~~~~L~~A~rPvi~~G~g~~~------~~a~~~l~~lae~~~~pV~tt~~~kg~~~~----~hp~~~G~~g~~~~~~~~~ 266 (557)
T PRK08199 197 LAELLARAERPLVILGGSGWT------EAAVADLRAFAERWGLPVACAFRRQDLFDN----RHPNYAGDLGLGINPALAA 266 (557)
T ss_pred HHHHHHhCCCCEEEECCCcCc------hhHHHHHHHHHHHhCCCEEEcCCcCCCCCC----CChhhccCCcCcCCHHHHH
Confidence 445566666677776666542 23355666666667888776443322 221 2222222222221 223
Q ss_pred hhcCCCccEEEecCC
Q psy16939 99 ILAHPNLRLFITHGG 113 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG 113 (174)
.+ ..+|++|.=|.
T Consensus 267 ~l--~~aDlvl~lG~ 279 (557)
T PRK08199 267 RI--READLVLAVGT 279 (557)
T ss_pred HH--HhCCEEEEeCC
Confidence 45 56888888774
No 474
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=22.43 E-value=5.1e+02 Score=22.38 Aligned_cols=52 Identities=6% Similarity=0.105 Sum_probs=26.0
Q ss_pred hHHHHHHHhcCC-C-CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEe
Q psy16939 20 LSDLQQRADAAK-G-GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI 71 (174)
Q Consensus 20 ~~~~~~~~~~~~-~-~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~ 71 (174)
.+.+.+++.... + ++.||.-++......++...-.++++.++.-.+.+++++
T Consensus 379 ae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT 432 (542)
T COG1111 379 AEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT 432 (542)
T ss_pred HHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEc
Confidence 344555555443 1 135555555544434555555555555555445555544
No 475
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.42 E-value=1.5e+02 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=7.8
Q ss_pred CccEEEecCChh
Q psy16939 104 NLRLFITHGGIS 115 (174)
Q Consensus 104 ~~~~~I~hgG~~ 115 (174)
.+|++|+-||.+
T Consensus 61 ~~DlVittGG~s 72 (152)
T cd00886 61 GVDLILTTGGTG 72 (152)
T ss_pred CCCEEEECCCcC
Confidence 567777777644
No 476
>PRK00942 acetylglutamate kinase; Provisional
Probab=22.38 E-value=3e+02 Score=21.19 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=27.1
Q ss_pred HHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC
Q psy16939 24 QQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI 73 (174)
Q Consensus 24 ~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 73 (174)
..|+.....+.+++-+|+.........+.+.+.+..+...+.++|++.+.
T Consensus 15 ~~yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGg 64 (283)
T PRK00942 15 LPYIQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGG 64 (283)
T ss_pred HHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34454444567888887766422111222223333455777777777665
No 477
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=22.30 E-value=62 Score=17.78 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=17.5
Q ss_pred cCCCCCEEEeecCCchhhhcC
Q psy16939 82 KTLPDNVFIQKWYPQTDILAH 102 (174)
Q Consensus 82 ~~~~~nv~~~~~~p~~~~l~~ 102 (174)
+.++..+....|.|.+++++.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~ 28 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIAL 28 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEE
Confidence 366778999999999998865
No 478
>PRK06154 hypothetical protein; Provisional
Probab=22.29 E-value=3.5e+02 Score=23.28 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI 73 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 73 (174)
+..+.+...++|+|++..|.... +-.+++.+..+.++.+|+-...+
T Consensus 206 ~aa~~L~~A~rPvil~G~g~~~~------~a~~~l~~lae~l~~PV~tt~~g 251 (565)
T PRK06154 206 EAAALLLAAERPVIYAGQGVLYA------QATPELKELAELLEIPVMTTLNG 251 (565)
T ss_pred HHHHHHHhCCCCEEEECCCcccc------ChHHHHHHHHHHhCCCEEECCCc
Confidence 34456666667888877776532 12344444445567787754433
No 479
>PRK01112 phosphoglyceromutase; Provisional
Probab=22.27 E-value=61 Score=24.28 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=19.3
Q ss_pred CccEEEecCChhhHHHHHHcCCCe
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
+.-++|+|||...+.-+...|.|.
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 467888999988888888877664
No 480
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=22.14 E-value=2.6e+02 Score=18.82 Aligned_cols=47 Identities=6% Similarity=-0.077 Sum_probs=35.9
Q ss_pred HHHHHHHhcCC-CCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEe
Q psy16939 21 SDLQQRADAAK-GGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI 71 (174)
Q Consensus 21 ~~~~~~~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~ 71 (174)
..+-+++.... .+.|+|+.-+... +..+.+.++++|...+..++..-
T Consensus 28 ~a~~~~~~~~~~~~~VvVg~D~R~~----s~~~~~~~~~~l~~~G~~V~~~g 75 (137)
T PF02878_consen 28 QAFASYLKEKGNGSRVVVGRDTRPS----SPMLAKALAAGLRANGVDVIDIG 75 (137)
T ss_dssp HHHHHHHHHTTTSSEEEEEE-SSTT----HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhhcccCCCCeEEEEEcccCC----HHHHHHHHHHHHhhccccccccc
Confidence 34555666643 5899999988865 78899999999999999888654
No 481
>PRK03482 phosphoglycerate mutase; Provisional
Probab=22.11 E-value=68 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.5
Q ss_pred ccEEEecCChhhHHHHHHcCCCe
Q psy16939 105 LRLFITHGGISSLMEASSLGVPV 127 (174)
Q Consensus 105 ~~~~I~hgG~~t~~eal~~g~P~ 127 (174)
--++|+|||.-.+.=+...|.|.
T Consensus 144 ~vliVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 144 RPLLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred eEEEEeCcHHHHHHHHHHhCCCh
Confidence 35899999988888887888764
No 482
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=21.85 E-value=4.1e+02 Score=21.07 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred CccEEEecCC------hhhHHHHHHcCCCeEec-cccch-------HHHHHHHHHHcCceeEecCC
Q psy16939 104 NLRLFITHGG------ISSLMEASSLGVPVLGV-PFFGD-------QYRNMVLLRHRGYALIEPIQ 155 (174)
Q Consensus 104 ~~~~~I~hgG------~~t~~eal~~g~P~i~v-P~~~d-------Q~~na~~l~~~G~g~~l~~~ 155 (174)
.+..+++.|| ..+.+-|-..|.+.+++ |...+ +..|-..++..|+-+.+...
T Consensus 65 G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~ 130 (337)
T TIGR01274 65 GCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPD 130 (337)
T ss_pred CCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCC
Confidence 4566666654 33455566778888766 43222 35677778888888876544
No 483
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.81 E-value=3.8e+02 Score=20.96 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=29.4
Q ss_pred hHHHHHHHhcCC-CCe--EEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 20 LSDLQQRADAAK-GGF--VYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 20 ~~~~~~~~~~~~-~~~--v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
.+++.+.....+ +.. +|+..||-.. ++.+.+.++++.+...+.
T Consensus 63 ~~qi~~~~~~~~~~~~~~iyf~ggt~t~---l~~~~L~~l~~~i~~~~~ 108 (302)
T TIGR01212 63 KEQIKKQMKKYKKDKKFIAYFQAYTNTY---APVEVLKEMYEQALSYDD 108 (302)
T ss_pred HHHHHHHHHHhhccCEEEEEEECCCcCC---CCHHHHHHHHHHHhCCCC
Confidence 344555555443 334 8888888765 789999999998877654
No 484
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=21.80 E-value=1.2e+02 Score=22.59 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=23.4
Q ss_pred CChhhHHHHHHcCCCeEecccc--chHHHHHHHHHHcCceeEe
Q psy16939 112 GGISSLMEASSLGVPVLGVPFF--GDQYRNMVLLRHRGYALIE 152 (174)
Q Consensus 112 gG~~t~~eal~~g~P~i~vP~~--~dQ~~na~~l~~~G~g~~l 152 (174)
|...|+..|+..|+|+.++|.. .++..-...+-+.| +..+
T Consensus 169 Gt~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 169 GTLHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp THHHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 3467788899999999999853 34566667788888 4433
No 485
>PLN02573 pyruvate decarboxylase
Probab=21.75 E-value=5.3e+02 Score=22.31 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecC-CCCccccccCCCCCEEEe-ecCC---c
Q psy16939 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDI-TNDPVLNAKTLPDNVFIQ-KWYP---Q 96 (174)
Q Consensus 22 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~nv~~~-~~~p---~ 96 (174)
++.+++...++|+|++..|.... +..+++.+..+.++.+|+-...+ ..+++ ..|..+=.. +... .
T Consensus 216 ~a~~~L~~AkrPvil~G~g~~~~------~a~~~l~~lae~~~~PV~tt~~gkg~~pe----~hpl~~G~~~G~~~~~~~ 285 (578)
T PLN02573 216 AAAEFLNKAVKPVLVGGPKLRVA------KACKAFVELADASGYPVAVMPSAKGLVPE----HHPHFIGTYWGAVSTPFC 285 (578)
T ss_pred HHHHHHHhCCCCEEEEChhhccc------chHHHHHHHHHHhCCCEEECcccCCCCCC----cCCCceEEeeCCCCCHHH
Confidence 34556777777777766655422 23455555555668887754443 23331 233222222 2222 2
Q ss_pred hhhhcCCCccEEEecC
Q psy16939 97 TDILAHPNLRLFITHG 112 (174)
Q Consensus 97 ~~~l~~~~~~~~I~hg 112 (174)
..++ ..+|++|.=|
T Consensus 286 ~~~~--~~aDlvl~lG 299 (578)
T PLN02573 286 AEIV--ESADAYLFAG 299 (578)
T ss_pred HHHH--HhCCEEEEEC
Confidence 2355 5699999877
No 486
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.69 E-value=59 Score=22.61 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=43.1
Q ss_pred CccEEEecCChhhHHHHHHcCCCeEeccc--------cchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHhhc
Q psy16939 104 NLRLFITHGGISSLMEASSLGVPVLGVPF--------FGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 171 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~eal~~g~P~i~vP~--------~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~~ll~ 171 (174)
.++.-|+++....+++-+....+.+.+|- .++|..|.+.-.....|......-...-.-...++.+|.
T Consensus 63 ~~~~GVs~~~V~el~~~~r~~~R~VtVPA~lLe~vl~~A~~~L~~~~~~a~~~~~~~p~~v~~~~~~~~~~r~ll~ 138 (139)
T PF07128_consen 63 RHEEGVSSGTVMELIREVRRAARQVTVPADLLERVLRLAEQALWKREWAAWDAGRPVPESVTRRLADIAQVRALLK 138 (139)
T ss_pred chhccccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 35666777655555555666779999995 468888888888777777654332222334445555554
No 487
>PRK13840 sucrose phosphorylase; Provisional
Probab=21.63 E-value=1.1e+02 Score=26.14 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=31.7
Q ss_pred HcCCCeEeccccchHHHHHHHHHHcCceeEecCCCCCHHHHHHHHH
Q psy16939 122 SLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQ 167 (174)
Q Consensus 122 ~~g~P~i~vP~~~dQ~~na~~l~~~G~g~~l~~~~~~~~~l~~al~ 167 (174)
.-|+|+|...-.--+.-.-..+++.|-+..+.+..++.+++.+.++
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~ 415 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALE 415 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHH
Confidence 4589999875422222233566668999999988888888777654
No 488
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.44 E-value=3.9e+02 Score=21.42 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEec
Q psy16939 21 SDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKID 72 (174)
Q Consensus 21 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 72 (174)
+-++.+++..-+++|+-++|+... +.+....+.++. +.+..++....
T Consensus 226 ~~l~~~~~~~~~GiVl~~~G~Gn~----p~~~~~~l~~a~-~~Gi~VV~~Sq 272 (336)
T TIGR00519 226 DIIRNYLSKGYKGIVIEGTGLGHA----PQNKLQELQEAS-DRGVVVVMTTQ 272 (336)
T ss_pred HHHHHHHhCCCCEEEEeeECCCCC----CHHHHHHHHHHH-HCCCEEEEeCC
Confidence 345555554338999999999875 666655555544 44766666543
No 489
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=21.41 E-value=3.6e+02 Score=20.18 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=40.9
Q ss_pred CeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCch-------hhhcCCCc
Q psy16939 33 GFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQT-------DILAHPNL 105 (174)
Q Consensus 33 ~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-------~~l~~~~~ 105 (174)
++=|++-.|.+. +-..+++.|...|++|+...+...... ..+.++.+...-... ..+ ..+
T Consensus 16 ~VR~itN~SSG~-------iG~aLA~~L~~~G~~V~li~r~~~~~~----~~~~~v~~i~v~s~~~m~~~l~~~~--~~~ 82 (229)
T PRK06732 16 SVRGITNHSTGQ-------LGKIIAETFLAAGHEVTLVTTKTAVKP----EPHPNLSIIEIENVDDLLETLEPLV--KDH 82 (229)
T ss_pred CceeecCccchH-------HHHHHHHHHHhCCCEEEEEECcccccC----CCCCCeEEEEEecHHHHHHHHHHHh--cCC
Confidence 455665555543 356677777788998887765433221 112355554432211 122 568
Q ss_pred cEEEecCChhh
Q psy16939 106 RLFITHGGISS 116 (174)
Q Consensus 106 ~~~I~hgG~~t 116 (174)
|++|+-+|...
T Consensus 83 DivIh~AAvsd 93 (229)
T PRK06732 83 DVLIHSMAVSD 93 (229)
T ss_pred CEEEeCCccCC
Confidence 99999999754
No 490
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=21.39 E-value=3.3e+02 Score=26.56 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=57.5
Q ss_pred cccccCccccCCccccCChH-------------HHHHHHhc----CCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCC
Q psy16939 2 VSVLNRAVKLCSMCFIDGLS-------------DLQQRADA----AKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK 64 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~----~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~ 64 (174)
+.+||.+..+-+.-+..+|. =++++... .++.+.++-.|+... +..-+.+.++|.-+|
T Consensus 940 pdvLPTGRN~ya~DP~~iPT~aAw~~G~~lA~~lLe~y~~~~~G~yPe~Va~vLWgtdtm-----rt~Ge~iAqiL~LlG 1014 (1353)
T PLN03241 940 PGVLPTGRNIHALDPYRMPSAAAWARGARVAAAIIEQHRAANDGAYPETVAVNLWGLDAI-----KTKGESVAIVLALVG 1014 (1353)
T ss_pred CCcCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEEEEEchHhh-----hhCCHHHHHHHHHcC
Confidence 45677777776666654441 23344422 237888888898765 223455677777788
Q ss_pred CcEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCC
Q psy16939 65 LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGG 113 (174)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG 113 (174)
.+-+|-.. .. |.-+.-+|..+ |..|+.|++++=.|
T Consensus 1015 vrPvwd~~-GR------------V~g~ElIPLeE-LGRPRIDVvv~iSG 1049 (1353)
T PLN03241 1015 ARPVKEGT-GR------------VVRYELIPLSE-LGRPRVDVLCNMSG 1049 (1353)
T ss_pred CccccCCC-Cc------------ccceEEecHHH-cCCCCeeEEEEecc
Confidence 88778311 11 12223355555 46799999999999
No 491
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.37 E-value=4e+02 Score=22.94 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCC-CccccccCCCCCEEEeecC---Cchh
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITN-DPVLNAKTLPDNVFIQKWY---PQTD 98 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~nv~~~~~~---p~~~ 98 (174)
..+.+...++|+|++..|.... +..+++.+..++++.+++-...+.. +++ ..|.++=..+.. .-..
T Consensus 199 a~~~L~~A~rPvi~~G~g~~~~------~a~~~l~~lae~~~~pv~tt~~gkg~~p~----~hp~~~G~~G~~~~~~~~~ 268 (574)
T PRK07979 199 ALQTLVAAKKPVVYVGGGAINA------ACHQQLKELVEKLNLPVVSSLMGLGAFPA----THRQSLGMLGMHGTYEANM 268 (574)
T ss_pred HHHHHHcCCCCEEEECCCcccc------chHHHHHHHHHHhCCCEEEccccCCCCCC----CCcccccCCcCCCCHHHHH
Confidence 4455666666777777666432 2344555555566888776544322 221 222222122221 2234
Q ss_pred hhcCCCccEEEecCC
Q psy16939 99 ILAHPNLRLFITHGG 113 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG 113 (174)
++ ..||++|.=|-
T Consensus 269 ~l--~~aDlvl~vG~ 281 (574)
T PRK07979 269 TM--HNADVIFAVGV 281 (574)
T ss_pred HH--HhCCEEEEeCC
Confidence 55 56888888764
No 492
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=21.35 E-value=2.9e+02 Score=19.22 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcE--EEEecCCCCc---c-ccccC-CCCC--EEEe-ecCCchh--
Q psy16939 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPI--FWKIDITNDP---V-LNAKT-LPDN--VFIQ-KWYPQTD-- 98 (174)
Q Consensus 31 ~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~--i~~~~~~~~~---~-~~~~~-~~~n--v~~~-~~~p~~~-- 98 (174)
++.+|+|+--+......++++.+..+.+.|...||.. |+.+..+... + +.... -... +.+. ..+.+.+
T Consensus 15 Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~~~V~eR~~l~~~~~grsFTvI~~elp~g~~DiR 94 (146)
T PF04763_consen 15 EKNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSESMCVKERQILNDDSQGRSFTVILTELPEGSADIR 94 (146)
T ss_pred cCcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCCcchHHHHHhcCCccCceEEEEEEcCCCCccchh
Confidence 3677777775544444578999999999999999953 4555544321 1 11111 1111 2222 2333333
Q ss_pred hhcCCCccEEEecCChhhHHHHHHcCCCeEec
Q psy16939 99 ILAHPNLRLFITHGGISSLMEASSLGVPVLGV 130 (174)
Q Consensus 99 ~l~~~~~~~~I~hgG~~t~~eal~~g~P~i~v 130 (174)
-|..++=.++++.- -...++-+.|.-++.+
T Consensus 95 ~LqLASerilvs~~--~~aaDa~ASgCkvl~~ 124 (146)
T PF04763_consen 95 CLQLASERILVSRE--CDAADAYASGCKVLQF 124 (146)
T ss_pred hhhhhhccceeccc--ccHHHHHhcCceEEEe
Confidence 23234444444443 4678888889877776
No 493
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=21.28 E-value=2e+02 Score=21.69 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHhhC-CCcEEEEecC
Q psy16939 49 SEETKLGFLEVFKQL-KLPIFWKIDI 73 (174)
Q Consensus 49 ~~~~~~~i~~~l~~~-~~~~i~~~~~ 73 (174)
..+.++++.+.+++. +.++++++|+
T Consensus 21 ~~~~l~~l~~~l~~l~g~~vvlVhGg 46 (252)
T cd04241 21 REENLERIARELAEAIDEKLVLVHGG 46 (252)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEECC
Confidence 345667777777766 6666666654
No 494
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.27 E-value=4.4e+02 Score=25.55 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred cccccCccccCCccccCChH-------------HHHHHHhcC---CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCC
Q psy16939 2 VSVLNRAVKLCSMCFIDGLS-------------DLQQRADAA---KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKL 65 (174)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~ 65 (174)
+.+||.+..+-+.-+..+|. -++++.... ++.+.++-.||.... ..-+.+.++|.-+|+
T Consensus 842 pdvLPTGRNfys~Dp~~iPT~aAw~~G~~lA~~ll~~y~~e~G~yPe~va~~lWgt~tmR-----t~G~~iAqiL~LLGV 916 (1244)
T PRK05989 842 PDVLPTGRNFYSVDPRAVPTRAAWELGQKLAEQLLERYLQEHGEYPRSVGLSVWGTSTMR-----TGGDDIAQALALLGV 916 (1244)
T ss_pred CCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEchHhhh-----hCCHHHHHHHHHcCC
Confidence 45677776666665554441 233344433 378888888887652 234556777777899
Q ss_pred cEEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 66 PIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
+-+|-.+..... .+.+ +|..+ |..|+.|++|+=.|.
T Consensus 917 rPvWd~~~grV~---------g~ev---IPl~e-LgRPRIDVtvriSG~ 952 (1244)
T PRK05989 917 RPVWDEASRRVT---------GLEI---IPLAE-LGRPRIDVTLRISGF 952 (1244)
T ss_pred CccccCCCCCcc---------ceEE---eCHHH-cCCCCeeEEEEecch
Confidence 888853222222 1222 55554 567999999999985
No 495
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=21.26 E-value=5.2e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=21.3
Q ss_pred CccEEEecCChhhHHH-------HHHcCCCeEeccc
Q psy16939 104 NLRLFITHGGISSLME-------ASSLGVPVLGVPF 132 (174)
Q Consensus 104 ~~~~~I~hgG~~t~~e-------al~~g~P~i~vP~ 132 (174)
++|++|.=||. ++.+ ....|+|.+.+|.
T Consensus 269 r~D~IIAIGGG-sv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGGG-AATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcCh-HHHHHHHHHHHHHHcCCCEEEeCC
Confidence 69999998884 3332 2357999999997
No 496
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=21.26 E-value=3.3e+02 Score=19.78 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=41.9
Q ss_pred CChHHHHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCCCCccccccCCCCCEEEeecCCch
Q psy16939 18 DGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQT 97 (174)
Q Consensus 18 ~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~ 97 (174)
.+.+.+.+|- ..++.+-++..|-... +...++.+.+.. +.++++..|+..++ .
T Consensus 65 s~~~~i~~~k-~~G~vvhLtmyga~~~------~~~~~ir~~~~~-~~p~LIvvGg~gvp-------------------~ 117 (176)
T PRK03958 65 SWKKEIREWK-DGGIVVHLTMYGENIQ------DVEPEIREAHRK-GEPLLIVVGAEKVP-------------------R 117 (176)
T ss_pred CHHHHHHHHH-hCCcEEEEEEecCCcc------chHHHHHHhhcc-CCcEEEEEcCCCCC-------------------H
Confidence 3455667776 3334566666665543 156666666655 56777777755555 2
Q ss_pred hhhcCCCccEEEecCChhh
Q psy16939 98 DILAHPNLRLFITHGGISS 116 (174)
Q Consensus 98 ~~l~~~~~~~~I~hgG~~t 116 (174)
+++ ..||..+..|.++=
T Consensus 118 evy--e~aDynlgvg~qpH 134 (176)
T PRK03958 118 EVY--ELADWNVAVGNQPH 134 (176)
T ss_pred HHH--hhCCEEeccCCCCh
Confidence 445 56888886666553
No 497
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=21.21 E-value=3.7e+02 Score=20.25 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=33.7
Q ss_pred CCccEEEe---cCChhh-HHHHHH-cCCCeEeccccc-h---HHHHHHHHHHcCceeEec
Q psy16939 103 PNLRLFIT---HGGISS-LMEASS-LGVPVLGVPFFG-D---QYRNMVLLRHRGYALIEP 153 (174)
Q Consensus 103 ~~~~~~I~---hgG~~t-~~eal~-~g~P~i~vP~~~-d---Q~~na~~l~~~G~g~~l~ 153 (174)
+.+|++|+ |.-.+. +.+-+. .|+..|++|... + ...-.+.+++.|+-+...
T Consensus 50 ~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 50 PEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecC
Confidence 88999999 666542 223333 799999999753 3 223445677788776654
No 498
>PLN02618 tryptophan synthase, beta chain
Probab=21.15 E-value=3.3e+02 Score=22.59 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=29.8
Q ss_pred hhhHHHHHHcCCCeEec-cccc--hHHHHHHHHHHcCceeEec
Q psy16939 114 ISSLMEASSLGVPVLGV-PFFG--DQYRNMVLLRHRGYALIEP 153 (174)
Q Consensus 114 ~~t~~eal~~g~P~i~v-P~~~--dQ~~na~~l~~~G~g~~l~ 153 (174)
..+.+-|...|.+..++ |... .|..|..+++..|+-++.-
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEE
Confidence 33455667789998777 6631 2788999999999999864
No 499
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=21.14 E-value=3.2e+02 Score=26.34 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=55.7
Q ss_pred ccccCccccCCccccCChH-------------HHHHHHhcC---CCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCc
Q psy16939 3 SVLNRAVKLCSMCFIDGLS-------------DLQQRADAA---KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLP 66 (174)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~ 66 (174)
.+||.+..+-+.-+..+|. =+.++.... ++.+.++-.||... +..-+.+.++|.-+|.+
T Consensus 810 dvLPTGRN~ys~DP~~iPT~~A~~~G~~~A~~lL~~y~~e~G~yPe~va~vLWgtdt~-----rt~Ge~iAqiL~LlGvr 884 (1209)
T PRK13405 810 AILPTGRNLHGFDPFRIPSAFALQDGARQAARLLERHAAEGNPLPESVALVLWGTDNL-----KSEGGPIAQALALMGAR 884 (1209)
T ss_pred CCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEehHhh-----hhCCHHHHHHHHHcCCC
Confidence 4666666666665554442 133343332 37888888898765 22345566777777887
Q ss_pred EEEEecCCCCccccccCCCCCEEEeecCCchhhhcCCCccEEEecCCh
Q psy16939 67 IFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGI 114 (174)
Q Consensus 67 ~i~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~~~I~hgG~ 114 (174)
-+|-..+ ... .+.+ +|..+ |..|+.|++++=.|.
T Consensus 885 Pvwd~~G-rV~---------g~el---IPl~e-LGRPRIDVvv~iSGi 918 (1209)
T PRK13405 885 PRFDSYG-RLA---------GAEL---IPLEE-LGRPRIDVVMTLSGI 918 (1209)
T ss_pred cccCCCC-CCC---------ceEE---eCHHH-cCCCCeeEEEEecch
Confidence 7774321 111 1222 45544 567999999999994
No 500
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=21.13 E-value=2.9e+02 Score=23.96 Aligned_cols=78 Identities=10% Similarity=-0.049 Sum_probs=40.7
Q ss_pred HHHHHhcCCCCeEEEEcCCCcCCCCCCHHHHHHHHHHHhhCCCcEEEEecCC-CCccccccCCCCCEEEeecC---C-ch
Q psy16939 23 LQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDIT-NDPVLNAKTLPDNVFIQKWY---P-QT 97 (174)
Q Consensus 23 ~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~nv~~~~~~---p-~~ 97 (174)
..+++...++|+|++..|... .+..+++.+..+.++.+|+-...+. .+++ ..|.++-..+.. + ..
T Consensus 195 ~~~~L~~AkrPvIl~G~g~~~------~~a~~~l~~lae~~g~PV~tt~~gkg~~p~----~hpl~~G~~g~~~~~~~a~ 264 (588)
T TIGR01504 195 AVEMLNAAERPLIVAGGGVIN------ADAADLLQEFAELTGVPVIPTLMGWGCIPD----DHELMAGMVGLQTSHRYGN 264 (588)
T ss_pred HHHHHHhCCCcEEEECCCcch------hhhHHHHHHHHHHhCCCeEEcCccCCCCCC----CChhhCcCCCCCCCcHHHH
Confidence 445676666777776665542 2335556666666788877554432 2331 222222222221 1 12
Q ss_pred hhhcCCCccEEEecC
Q psy16939 98 DILAHPNLRLFITHG 112 (174)
Q Consensus 98 ~~l~~~~~~~~I~hg 112 (174)
.++ ..+|++|.=|
T Consensus 265 ~~l--~~aD~iL~lG 277 (588)
T TIGR01504 265 ATL--LESDFVFGIG 277 (588)
T ss_pred HHH--HhCCEEEEEC
Confidence 355 5688888665
Done!