RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16939
(174 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 170 bits (434), Expect = 4e-55
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 22 DLQQRAD-AAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLN 80
+++ + + G V S GS+V + ++EE Q+ + W+ D
Sbjct: 10 EMEDFVQSSGENGVVVFSLGSMV--SNMTEERANVIASALAQIPQKVLWRFDGNKPD--- 64
Query: 81 AKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNM 140
TL N + KW PQ D+L HP R FITHGG + + EA G+P++G+P F DQ N+
Sbjct: 65 --TLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNI 122
Query: 141 VLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
++ RG A+ T++ L + ++NDP
Sbjct: 123 AHMKARGAAVRVDFNTMSSTDLLNALKRVINDPS 156
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 106 bits (266), Expect = 8e-28
Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 5/147 (3%)
Query: 28 DAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDN 87
A V +S GS + F L LPDN
Sbjct: 228 PAGAEKVVLVSLGSAFTKQ---PAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDN 284
Query: 88 VFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRG 147
V + W PQ IL LF+TH G E + P++ VP DQ+ N +L+ G
Sbjct: 285 VEVHDWVPQLAILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLG 342
Query: 148 YALIEPIQTLTKQSFLKNAQTMLNDPR 174
A + T + A +++DP
Sbjct: 343 VARKLATEEATADLLRETALALVDDPE 369
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 97.9 bits (244), Expect = 9e-25
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 8/148 (5%)
Query: 28 DAAKGGFVYMSFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
+ ++ GS D L L + + DP +P
Sbjct: 251 PGDGRPVLLIALGSAFTDHLDFYRTC----LSAVDGLDWHVVLSVGRFVDPAD-LGEVPP 305
Query: 87 NVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR 146
NV + +W PQ DIL FITH G+ S MEA S VP++ VP +Q N +
Sbjct: 306 NVEVHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Query: 147 GYALIEPIQTLTKQSFLKNAQTMLNDPR 174
G P +T + + + +DP
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVASDPG 391
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 85.2 bits (211), Expect = 3e-20
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%)
Query: 27 ADAAKGGFVYMSFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLP 85
+ +S G+ + + + F + I DP + LP
Sbjct: 226 PPRPDAPVLLVSLGNQFNEHPEFFRAC----AQAFADTPWHVVMAIGGFLDPAV-LGPLP 280
Query: 86 DNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFG-DQYRNMVLLR 144
NV +W P +LAH R +THG +++EA + GVP++ VP F + + +
Sbjct: 281 PNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVI 338
Query: 145 HRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
G + L S + + + D
Sbjct: 339 ELGLGSVLRPDQLEPASIREAVERLAADSA 368
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 84.4 bits (209), Expect = 8e-20
Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 8/141 (5%)
Query: 35 VYMSFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW 93
V +S G+ D + F + + DP LP NV +W
Sbjct: 250 VLVSLGTTFNDRPGFFRDC----ARAFDGQPWHVVMTLGGQVDPAA-LGDLPPNVEAHRW 304
Query: 94 YPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEP 153
P +L + +THGG+ +LMEA G P++ VP D + G + P
Sbjct: 305 VPHVKVLEQ--ATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLP 362
Query: 154 IQTLTKQSFLKNAQTMLNDPR 174
+ + L + DP
Sbjct: 363 GEKADGDTLLAAVGAVAADPA 383
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 78.2 bits (193), Expect = 1e-17
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 35 VYMSFGSVV-DPTKLSEETKLGFLEVFKQLK----LPIFWKIDITNDPVLNAKTLPDNVF 89
VY++ G+ ++ ++ L + +D++ +P NV
Sbjct: 245 VYLTLGTSSGGTVEVLRAA----IDGLAGLDADVLVASGPSLDVSGLG-----EVPANVR 295
Query: 90 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYA 149
++ W PQ +L H + L + HGG + + A GVP L P+ GD + N + G
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAG 353
Query: 150 LIEPIQTLTKQSFLKNAQTMLNDPR 174
++ S A+ +L +
Sbjct: 354 DHLLPDNISPDSVSGAAKRLLAEES 378
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 76.8 bits (189), Expect = 4e-17
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 4/148 (2%)
Query: 27 ADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
D + V ++ G + + + L + I D + +PD
Sbjct: 262 HDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVAN--IPD 319
Query: 87 NVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR 146
NV + P +L + HGG S A+ GVP + +P D +
Sbjct: 320 NVRTVGFVPMHALLPT--CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEF 377
Query: 147 GYALIEPIQTLTKQSFLKNAQTMLNDPR 174
G + P+ LT ++ + +L+DP
Sbjct: 378 GAGIALPVPELTPDQLRESVKRVLDDPA 405
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 75.3 bits (185), Expect = 1e-16
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 9/139 (6%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWY 94
VY+ FGS+ P ++ + + I L + F
Sbjct: 241 VYLGFGSLGAPADAVRVA----IDAIRAHGRRV---ILSRGWADLVLPDDGADCFAIGEV 293
Query: 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154
+ + I HGG + A+ G P + +P DQ + G +
Sbjct: 294 NHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDG 351
Query: 155 QTLTKQSFLKNAQTMLNDP 173
T S T L
Sbjct: 352 PIPTFDSLSAALATALTPE 370
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 74.4 bits (183), Expect = 2e-16
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 142
LP+ V +P + I+ + + HGG + + S GVP + VP + + + L
Sbjct: 281 PLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL 338
Query: 143 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
L G + P + +S L + +D
Sbjct: 339 LHAAGAGVEVPWEQAGVESVLAACARIRDDSS 370
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 74.1 bits (182), Expect = 2e-16
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 9/138 (6%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWY 94
VY+ FGS P + + +E + + + + L D+ +
Sbjct: 224 VYVGFGSGPAPAEAARVA----IEAVRAQGRRV---VLSSGWAGLGRIDEGDDCLVVGEV 276
Query: 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154
+ + + HGG + + G P + VP DQ + G +
Sbjct: 277 NHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDG 334
Query: 155 QTLTKQSFLKNAQTMLND 172
T T +S T L
Sbjct: 335 PTPTVESLSAALATALTP 352
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 73.3 bits (180), Expect = 5e-16
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 6/150 (4%)
Query: 27 ADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
A V + G +V + + + + +L LPD
Sbjct: 213 AARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTD--LPD 270
Query: 87 NVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR 146
N I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 271 NARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAA 328
Query: 147 GYALIEPIQ--TLTKQSFLKNAQTMLNDPR 174
G + P + + F + T+L D
Sbjct: 329 GAGICLPDEQAQSDHEQFTDSIATVLGDTG 358
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 69.1 bits (169), Expect = 2e-14
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 35 VYMSFGSVV--DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK 92
V++ FGS ++ +E + + I L D+ F
Sbjct: 240 VHIGFGSSSGRGIADAAKV----AVEAIRAQGRRV---ILSRGWTELVLPDDRDDCFAID 292
Query: 93 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIE 152
+ + I HG + A+ GVP L +P DQ + G +
Sbjct: 293 EVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAH 350
Query: 153 PIQTLTKQSFLKNAQTMLNDP 173
T T +S T+L
Sbjct: 351 DGPTPTFESLSAALTTVLAPE 371
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 68.3 bits (167), Expect = 3e-14
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 7/142 (4%)
Query: 35 VYMSFGSVVDPTKLSEETKL--GFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQK 92
V ++ GS V G + + + + T L + +
Sbjct: 213 VLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEAL--RAEVPQARVG- 269
Query: 93 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIE 152
W P + L + H G S + S GVP L +P + G A+
Sbjct: 270 WTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL 327
Query: 153 PIQTLTKQSFLKNAQTMLNDPR 174
+ ++ + Q +
Sbjct: 328 LPGEDSTEAIADSCQELQAKDT 349
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 67.2 bits (164), Expect = 8e-14
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 83 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNM-- 140
TLP NV W P +L + HGG ++M A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 141 VLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
+ RG L+ + + ++ D
Sbjct: 338 EAVSRRGIGLVSTSDKVDADL----LRRLIGDES 367
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 66.5 bits (163), Expect = 2e-13
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 32/127 (25%)
Query: 35 VYMSFGSVVDPTK--LSE------ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
VY+SFGSVV P L+ E F+ F+ DP + LP
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGFPFIWSFR-------------GDP---KEKLPK 319
Query: 87 NV--------FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYR 138
I W PQ +IL H ++ +F+TH G +S++E GVP++ PFFGDQ
Sbjct: 320 GFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGL 379
Query: 139 NMVLLRH 145
N +L
Sbjct: 380 NTILTES 386
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 66.1 bits (162), Expect = 2e-13
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 32/127 (25%)
Query: 35 VYMSFGSVVDPTK--LSE------ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
VY+SFG+V P + +++ F+ + + LP+
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR-------------DKAR---VHLPE 317
Query: 87 NV--------FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYR 138
+ W PQ ++LAH + F+TH G +SL E+ + GVP++ PFFGDQ
Sbjct: 318 GFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRL 377
Query: 139 NMVLLRH 145
N ++
Sbjct: 378 NGRMVED 384
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 65.8 bits (161), Expect = 2e-13
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 32/123 (26%)
Query: 35 VYMSFGS--VVDPTKLSE------ETKLGFLEVFKQLKLPIFWKI--DITNDPVLNAKTL 84
VY++FGS V+ P +L E K FL W I D+ +
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFL-----------WIIRPDLVIG---GSVIF 343
Query: 85 PDNV--------FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 136
I W PQ +L HP++ F+TH G +S E+ GVP+L PFF DQ
Sbjct: 344 SSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
Query: 137 YRN 139
+
Sbjct: 404 PTD 406
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 59.2 bits (144), Expect = 4e-11
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 35 VYMSFGS--VVDPTKLSE------ETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPD 86
+Y+SFGS + +L+E +++ FL V + ++ LP
Sbjct: 271 LYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPP 330
Query: 87 NVF----------IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 136
F I W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q
Sbjct: 331 G-FLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
Query: 137 YRNMVLL 143
N VLL
Sbjct: 390 KMNAVLL 396
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 57.6 bits (140), Expect = 2e-10
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 143
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Query: 56 FLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGIS 115
+ K+PI V + + + L I+H G
Sbjct: 84 RGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTG 143
Query: 116 SLMEASSLGVPVLGVPFF----GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQT 168
S++++ L P++ Q + GY + L+ +QT
Sbjct: 144 SILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTETGLIAGLRASQT 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 5e-04
Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 51/177 (28%)
Query: 5 LNRAVKLCSMCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLK 64
L ++ ++ L + R ++ +
Sbjct: 355 LTTIIESS----LNVLEPAEYRK-------MFDRLSVFPPSAHIPTIL------------ 391
Query: 65 LPIFWKIDITNDPVLNAKTLPDNVFIQKWYP---------QTDILAHPNL-----RLFIT 110
L + W I +D ++ L ++K ++ R +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 111 HGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYAL--IEPIQ--TLTKQSFL 163
H I ++ L P L DQY H G+ L IE + TL + FL
Sbjct: 452 HYNIPKTFDSDDLIPPYL------DQY----FYSHIGHHLKNIEHPERMTLFRMVFL 498
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 33.2 bits (74), Expect = 0.034
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 92 KWYPQTDILAHPNLR--LFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYA 149
+ + + +A I S + EA L + + +Q L +GY
Sbjct: 211 RLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKKGYE 269
Query: 150 L 150
+
Sbjct: 270 V 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.034
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 54/181 (29%)
Query: 21 SDLQQRADAAKGGFVYMSF---GSVVDPTKLSE-----ETKLGFLEVFKQLKLPIFWKID 72
S L + F G+ D E +T + + +
Sbjct: 143 SALFRAVGEGNAQL-VAIFGGQGNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLS--E 197
Query: 73 ITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLR---LFITHGGISSLMEASSLGVPVLG 129
+ + K + I +W L +P+ ++ IS P++G
Sbjct: 198 LIRTTLDAEKVFTQGLNILEW------LENPSNTPDKDYLLSIPIS---------CPLIG 242
Query: 130 VPFFGDQYRNMVLLRHRGY---ALIEPIQTLTK-----------------QSFLKNAQTM 169
V Y +V + G+ L ++ T +SF + +
Sbjct: 243 VIQLA-HY--VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 170 L 170
+
Sbjct: 300 I 300
Score = 31.9 bits (72), Expect = 0.11
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 62/181 (34%)
Query: 14 MCFIDGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGF--LEVFKQ--LKLPIFW 69
M G+ DL + + AA+ V + + GF L++ + L I +
Sbjct: 1631 M----GM-DLYKTSKAAQ---------DVWNRADNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 70 ------KI-----DITNDPVLNAKTLPDNVFIQKWYPQTD-ILAHPNLRLFIT------- 110
+I + + +++ K + +F + T L T
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 111 -------------HGGIS--------SLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYA 149
G I SL E ++L + V ++ +RG
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL-ASLADVMSIESLVE---VVFYRGMT 1792
Query: 150 L 150
+
Sbjct: 1793 M 1793
Score = 27.7 bits (61), Expect = 2.6
Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 60/150 (40%)
Query: 12 CSMCFIDGLSD--LQQRADAA-----KGGFVYMS-------FGSVV--DPTKLSEETKLG 55
M I L+ +Q + G V +S VV P L G
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSL-----YG 388
Query: 56 FLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGIS 115
++ K P +D + P K N F+ P + + P F H S
Sbjct: 389 LNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFL----P---VAS-P----F--H---S 429
Query: 116 SLME------------------ASSLGVPV 127
L+ A + +PV
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 28.8 bits (65), Expect = 1.0
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 93 WYPQTDILAHPNLRLFITHG----GISSLMEASSLGVPVLG 129
DI A P GI +EA + GVPV+
Sbjct: 269 TLAAADIFAMPARTRGGGLDVEGLGIV-YLEAQACGVPVIA 308
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 28.7 bits (64), Expect = 1.0
Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 22/158 (13%)
Query: 31 KGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTL------ 84
+ KL+ + + K+ + + + + +
Sbjct: 439 PEVVNIGIAST---TMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKS 495
Query: 85 --PDNVFIQKWYPQTDILA-HPNLRLFI---THGGISSLMEASSLGVPVLGVPFFGDQYR 138
D+ P L N + + G + +++ +LG+ + G +
Sbjct: 496 YLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKT--GAEVH 553
Query: 139 NMV---LLRHRGYALIEPIQTLTKQSFLKNAQTMLNDP 173
+ L + G L E + T +++ A + +
Sbjct: 554 EHIDEGLFKRLG--LPEWLIANTVDEYVERAVRLAENH 589
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 27.9 bits (63), Expect = 1.7
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 18 DGLSDLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFL-----EVFK 61
+ + +AD + + + P + L +F
Sbjct: 173 PHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFD 221
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 27.3 bits (61), Expect = 2.7
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 112 GGISSLMEASSLGVPV-----LGVPFFGDQYRNMVLLRHRGYALIEPIQTLTK 159
+ +A GV + GV G ++ V + G ++ IQ+ T
Sbjct: 308 QISDTFRKAYEKGVKIAFGTDAGVQKHGTNWKEFVYMVENGMPAMKAIQSATM 360
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
structural genomics, PSI- 2, protein structure
initiative; NMR {Thermotoga maritima}
Length = 178
Score = 26.5 bits (59), Expect = 3.6
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 86 DNVFIQKWYPQTDILAHPNLRLFITHGGI------SSLMEASSLGVPVLGVPFFG----- 134
D +++ P + +L + + + HG L++ + V+ FG
Sbjct: 84 DYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPWDLKDRLLKVFNEKPQVI---LFGHTHEP 140
Query: 135 --DQYRNMVLL-----RHRGYALIE 152
+ L YA++E
Sbjct: 141 EDTVKAGVRFLNPGSLAEGSYAVLE 165
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 26.9 bits (60), Expect = 4.3
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 21/71 (29%)
Query: 93 WYPQTDI---LAHPNLRLFITHGGISSLMEASSLGVP----VLGVPFFGDQYRNMVLLRH 145
W T L P+ G S ++A G+P VLG P++G
Sbjct: 192 WSRVTGPPAALFDPSNAGPSGDAGTRSWIQA---GLPAKKAVLGFPYYG----------- 237
Query: 146 RGYALIEPIQT 156
+ L
Sbjct: 238 YAWRLTNANSH 248
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical
bundle, structural genomics, J center for structural
genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus
aurantiacus}
Length = 199
Score = 26.5 bits (59), Expect = 4.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 19 GLSDLQQRADAAKGGFVYMSFGS 41
+SD+ KGG Y F S
Sbjct: 29 AISDIMAATGLEKGGI-YRHFES 50
>3eup_A Transcriptional regulator, TETR family; structural genomics,
MCSG, protein structure initiative, midwest center for
STRU genomics; 1.99A {Cytophaga hutchinsonii}
Length = 204
Score = 26.1 bits (58), Expect = 4.9
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 19 GLSDLQQRADAAKGGFVYMSFGS 41
L+DL + + KG Y +F +
Sbjct: 33 SLTDLTEATNLTKGSI-YGNFEN 54
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant
protein, sugar binding protein; 2.38A {Ginkgo biloba}
PDB: 3a2e_A
Length = 108
Score = 25.7 bits (56), Expect = 5.5
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 12 CSMCFIDGLSDLQQRADAAKGGFVY 36
C+ C + ++ + + A G V
Sbjct: 71 CTACLSNLVNRIFSICNNAIGARVQ 95
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 26.1 bits (58), Expect = 5.8
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 93 WYPQTDILAHPNLRLFITHG-GISSLMEASSLGVPVL--GVP 131
W P ++LA L+ G G+ +++ + +L +P
Sbjct: 48 WQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIP 89
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 26.4 bits (58), Expect = 6.3
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 112 GGISSLMEA-SSL---GVPVLGVPFFGDQYRNMVLLRHR 146
GGIS + A SL G + V F N V L
Sbjct: 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSY 281
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus} SCOP:
d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A
2r17_A
Length = 192
Score = 26.0 bits (57), Expect = 6.3
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 72 DITNDPVLNA-KTLPDNVFI-------QKWYPQTDILAHPNLRLFITHG 112
++ + KTL +V I YP+ ++ ++ + HG
Sbjct: 49 NLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHG 97
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like
fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus
epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Length = 181
Score = 25.6 bits (57), Expect = 6.9
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 138 RNMVLLRHRGYALIEP 153
+N+ LL++ + P
Sbjct: 128 KNIDLLKNNDVKVYSP 143
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas
aeruginosa}
Length = 197
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 19 GLSDLQQRADAAKGGFVYMSFGS 41
GL+++ Q A KG F Y F S
Sbjct: 32 GLNEILQSAGVPKGSF-YHYFKS 53
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 25.6 bits (57), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 138 RNMVLLRHRGYALIEP 153
RN+ LR G+ +IEP
Sbjct: 136 RNIEQLRKDGHIVIEP 151
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 25.8 bits (57), Expect = 8.5
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 109 ITHGGISSLMEASSLGVPV-----LGVPFFGDQYRNMVLLRHRGYALIEPIQTLTK 159
+ + M A G + G+ GD + + G +E IQ T
Sbjct: 294 VGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTI 349
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in
diseases, isomerase, center for structural genomics of
INFE diseases, csgid; 2.35A {Vibrio cholerae}
Length = 396
Score = 25.6 bits (57), Expect = 9.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 119 EASSLGVPVL 128
EA SLG PVL
Sbjct: 321 EAPSLGKPVL 330
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 25.7 bits (57), Expect = 9.8
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 143 LRHRGYALIEPIQTLTKQS-FL 163
L HRG+ PI L S +L
Sbjct: 66 LLHRGF----PIDQLATDSNYL 83
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center
for structural genomics of infec diseases, csgid, alpha
beta; HET: PGE; 2.20A {Listeria monocytogenes}
Length = 403
Score = 25.6 bits (57), Expect = 9.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 119 EASSLGVPVL 128
EA +GVPVL
Sbjct: 315 EAPGMGVPVL 324
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics,
isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP:
c.87.1.3 PDB: 1f6d_A*
Length = 384
Score = 25.5 bits (57), Expect = 9.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 119 EASSLGVPVL 128
EA SLG PVL
Sbjct: 296 EAPSLGKPVL 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.419
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,602,879
Number of extensions: 147387
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 73
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)