RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16939
(174 letters)
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 82.5 bits (202), Expect = 1e-19
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 9/139 (6%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWY 94
VY+ FGS+ P ++ + + + + F
Sbjct: 241 VYLGFGSLGAPADAVRV----AIDAIRAHGRRVILSRGWADLV---LPDDGADCFAIGEV 293
Query: 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154
+ + I HGG + A+ G P + +P DQ + G +
Sbjct: 294 NHQVLFGR--VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDG 351
Query: 155 QTLTKQSFLKNAQTMLNDP 173
T S T L
Sbjct: 352 PIPTFDSLSAALATALTPE 370
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 79.0 bits (193), Expect = 2e-18
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 7/139 (5%)
Query: 35 VYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWY 94
V++ FGS + +E + + L D+ F
Sbjct: 240 VHIGFGSSSGRGI--ADAAKVAVEAIRAQGRRVIL---SRGWTELVLPDDRDDCFAIDEV 294
Query: 95 PQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPI 154
+ + I HG + A+ GVP L +P DQ + G +
Sbjct: 295 NFQALFRR--VAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDG 352
Query: 155 QTLTKQSFLKNAQTMLNDP 173
T T +S T+L
Sbjct: 353 PTPTFESLSAALTTVLAPE 371
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 77.9 bits (190), Expect = 7e-18
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 7/145 (4%)
Query: 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLP---DNVFI 90
VY+SFG+V P + E + ++P W + L L +
Sbjct: 267 VVYISFGTVTTP---PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMV 323
Query: 91 QKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL-RHRGYA 149
W PQ ++LAH + F+TH G +SL E+ + GVP++ PFFGDQ N ++
Sbjct: 324 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 383
Query: 150 LIEPIQTLTKQSFLKNAQTMLNDPR 174
+ TK + +L+ +
Sbjct: 384 VRIEGGVFTKSGLMSCFDQILSQEK 408
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 74.4 bits (181), Expect = 9e-17
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 10/160 (6%)
Query: 22 DLQQRADAAKGGFVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNA 81
L G VY++FGS ++ E L F K W I +
Sbjct: 278 CLDWLESKEPGSVVYVNFGSTT---VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV 334
Query: 82 K-------TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFG 134
+ D I W PQ +L HP++ F+TH G +S E+ GVP+L PFF
Sbjct: 335 IFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFA 394
Query: 135 DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
DQ + + + +E + ++ K ++ +
Sbjct: 395 DQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 434
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 73.2 bits (178), Expect = 2e-16
Identities = 27/113 (23%), Positives = 44/113 (38%)
Query: 34 FVYMSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW 93
F+ V E LG + + + + L L I W
Sbjct: 278 FLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGW 337
Query: 94 YPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR 146
PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L
Sbjct: 338 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 390
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 70.2 bits (170), Expect = 3e-15
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 82 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 141
+T I W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q N V
Sbjct: 330 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 389
Query: 142 LLRHR 146
LL
Sbjct: 390 LLSED 394
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 69.3 bits (168), Expect = 6e-15
Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 9/139 (6%)
Query: 39 FGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD 98
G + + ++ + I + + + + F+ +
Sbjct: 226 VGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADLVLPD---DGADCFVVGEVNLQE 282
Query: 99 ILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGD----QYRNMVLLRHRGYALIEPI 154
+ + I H + + A G+P + V D Q + + G +
Sbjct: 283 LFGR--VAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDG 340
Query: 155 QTLTKQSFLKNAQTMLNDP 173
T S T L
Sbjct: 341 PVPTIDSLSAALDTALAPE 359
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 32.4 bits (72), Expect = 0.019
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 89 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFF---GDQYRNMVLLRH 145
+ A+ + + G ++ E ++ G+P L VPF QY N + L
Sbjct: 233 HKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK 292
Query: 146 RGYALIEPIQTLTKQSFLKNAQTMLNDPR 174
G A I L+ + +
Sbjct: 293 AGAAKIIEQPQLSVDAVANTLAGWSRETL 321
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 26.2 bits (57), Expect = 2.5
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 30 AKGGFVYM---SFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKI 71
G + + + S K++ E KL + LP+ W +
Sbjct: 314 KDGIPLSVIEAAQQS--PVYKMAMEWKLALPLHPEYRTLPMVWYV 356
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 183
Score = 24.7 bits (53), Expect = 5.6
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 64 KLPIFWKIDITNDPVLNAK 82
+ I W +++ +D +++ K
Sbjct: 151 DIGIDWPLEMVDDLIISEK 169
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
(Coccidioides immitis) [TaxId: 5501]}
Length = 330
Score = 24.4 bits (52), Expect = 7.9
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 101 AHPNLRLFITHGGISSLMEASSLGVP----VLGVPFFG 134
P F + + ++A GVP VLG+P
Sbjct: 225 TKPESTPFSSDKAVKDYIKA---GVPANKIVLGMPLDT 259
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
typhimurium [TaxId: 90371]}
Length = 427
Score = 24.2 bits (52), Expect = 9.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 91 QKWYPQTDILAHPNLRLFITHG 112
Q+W I + P +R+F T+
Sbjct: 359 QQWQAGDSIWSRPAIRIFATYA 380
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.419
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,801
Number of extensions: 27389
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 13
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)