BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1694
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 111 SLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145
+L G PGTGK + +++ YKDK T+RFV+
Sbjct: 48 TLLGRPGTGKTVT----LRKLWELYKDKTTARFVY 78
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 28/106 (26%)
Query: 99 QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF----- 153
Q RY +TK +I+ GLP G NY D++ + + +S+ HF
Sbjct: 91 QPRYADTKLGSINSMGLPNLGINYYLDYV-------------TELQKQPDSKNHFLSLVG 137
Query: 154 --PNENHVSLYRLQLT--------NWIISNVTACDRAIFIFDEVDK 189
P E H L ++ + N NV + + F+ D+
Sbjct: 138 MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQ 183
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY 135
H Q I+ I L Y K I ++GL GTGK V F++S + K++
Sbjct: 24 HREDQIRKIASILAPL-------YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP-GTGKNYVTDFI 127
++ L ++LK V GQ+ AI + A+K H K + L P G GK VT +
Sbjct: 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508
Query: 128 VSSI--------FKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD 178
++ Y ++ T SR + + F LT+ +I +
Sbjct: 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG-------LLTDAVIKH----P 557
Query: 179 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIFLFLSNSGGTE 228
A+ + DE++K + ++++ +D+ + + + F+N + + +N+G E
Sbjct: 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRE 611
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 112 LHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 147
L+G PGTGK + + +S + S FVHK+
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246
>pdb|4EJS|C Chain C, Structure Of Yeast Elongator Subcomplex Elp456
Length = 277
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 97 HFQNRYHNTKALAISLHGLPGTGKNY-----VTDFIVSSIFKRYKDKGTSRFVHKFNSRI 151
H QN + N SL+ L NY ++DFIV++I + +DK S + KF++ I
Sbjct: 88 HEQNYFTN------SLNKLKIPSNNYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAI 141
Query: 152 H-FPNENHVSLYRLQLTNWIISNVTACD 178
P + V + + +L ++S +T +
Sbjct: 142 QNNPTDTIVIIEQPELLLSLVSGLTCSE 169
>pdb|4A8J|C Chain C, Crystal Structure Of The Elongator Subcomplex Elp456
pdb|4A8J|F Chain F, Crystal Structure Of The Elongator Subcomplex Elp456
Length = 280
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 97 HFQNRYHNTKALAISLHGLPGTGKNY-----VTDFIVSSIFKRYKDKGTSRFVHKFNSRI 151
H QN + N SL+ L NY ++DFIV++I + +DK S + KF++ I
Sbjct: 91 HEQNYFTN------SLNKLKIPSNNYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAI 144
Query: 152 -HFPNENHVSLYRLQLTNWIISNVTACD 178
+ P + V + + +L ++S +T +
Sbjct: 145 QNNPTDTIVIIEQPELLLSLVSGLTCSE 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,322,928
Number of Sequences: 62578
Number of extensions: 294582
Number of successful extensions: 818
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)