Query psy1694
Match_columns 247
No_of_seqs 224 out of 1671
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:34:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2170|consensus 100.0 3.2E-46 6.9E-51 322.3 15.8 194 47-247 54-247 (344)
2 PF06309 Torsin: Torsin; Inte 100.0 1.2E-30 2.7E-35 201.3 14.0 127 51-184 1-127 (127)
3 COG2204 AtoC Response regulato 100.0 6E-30 1.3E-34 236.0 2.9 190 29-246 86-300 (464)
4 COG0542 clpA ATP-binding subun 100.0 4.6E-28 9.9E-33 234.1 12.8 159 67-233 480-652 (786)
5 COG3604 FhlA Transcriptional r 99.9 4E-24 8.6E-29 196.0 6.9 143 79-246 224-382 (550)
6 TIGR03345 VI_ClpV1 type VI sec 99.9 6.4E-23 1.4E-27 204.0 14.5 159 67-233 555-727 (852)
7 KOG1051|consensus 99.9 1.2E-22 2.5E-27 198.9 15.4 158 68-233 552-719 (898)
8 CHL00095 clpC Clp protease ATP 99.9 9.1E-23 2E-27 203.0 14.4 155 68-230 499-667 (821)
9 PRK11034 clpA ATP-dependent Cl 99.9 6.2E-23 1.4E-27 201.1 12.8 153 68-231 448-614 (758)
10 TIGR03346 chaperone_ClpB ATP-d 99.9 2.4E-22 5.2E-27 200.6 15.1 156 68-231 555-724 (852)
11 TIGR02639 ClpA ATP-dependent C 99.9 2.4E-22 5.3E-27 197.8 14.6 153 68-231 444-610 (731)
12 PRK10865 protein disaggregatio 99.9 1.6E-21 3.4E-26 194.5 14.9 156 68-231 558-727 (857)
13 COG3829 RocR Transcriptional r 99.9 1.6E-22 3.5E-27 187.4 5.0 144 79-246 246-405 (560)
14 PF00158 Sigma54_activat: Sigm 99.8 1.9E-20 4E-25 153.3 12.1 145 80-246 1-158 (168)
15 PF07724 AAA_2: AAA domain (Cd 99.8 8.2E-20 1.8E-24 150.0 5.3 115 109-232 5-137 (171)
16 PRK15424 propionate catabolism 99.7 4.9E-19 1.1E-23 168.0 3.6 196 29-246 164-387 (538)
17 TIGR00382 clpX endopeptidase C 99.7 8.3E-17 1.8E-21 148.2 14.5 147 67-224 66-247 (413)
18 TIGR02974 phageshock_pspF psp 99.7 2E-17 4.3E-22 149.0 8.5 145 80-246 1-158 (329)
19 PRK05342 clpX ATP-dependent pr 99.7 3.5E-16 7.7E-21 144.5 14.9 148 67-224 60-239 (412)
20 COG1221 PspF Transcriptional r 99.7 2.2E-17 4.7E-22 150.5 5.3 122 72-208 72-203 (403)
21 COG3283 TyrR Transcriptional r 99.7 1E-16 2.3E-21 142.3 8.8 141 79-246 205-358 (511)
22 TIGR02329 propionate_PrpR prop 99.7 7.2E-17 1.6E-21 153.2 6.8 147 79-246 213-372 (526)
23 CHL00181 cbbX CbbX; Provisiona 99.6 3.3E-15 7.2E-20 132.2 14.5 141 66-224 11-170 (287)
24 COG0466 Lon ATP-dependent Lon 99.6 1E-15 2.2E-20 145.9 10.0 158 66-238 311-488 (782)
25 PRK10820 DNA-binding transcrip 99.6 7.7E-16 1.7E-20 146.5 9.1 146 79-246 205-363 (520)
26 TIGR02915 PEP_resp_reg putativ 99.6 8.6E-16 1.9E-20 143.2 8.8 192 30-246 84-298 (445)
27 PRK11608 pspF phage shock prot 99.6 1.6E-15 3.5E-20 136.5 10.3 149 79-246 7-165 (326)
28 TIGR01817 nifA Nif-specific re 99.6 1.5E-15 3.2E-20 145.1 10.6 146 79-246 197-355 (534)
29 PRK05022 anaerobic nitric oxid 99.6 2.2E-15 4.8E-20 143.1 9.9 146 79-246 188-346 (509)
30 TIGR00763 lon ATP-dependent pr 99.6 3.3E-15 7.2E-20 148.2 11.3 145 67-225 309-473 (775)
31 COG3284 AcoR Transcriptional a 99.6 3.3E-16 7.1E-21 147.7 3.8 141 81-246 316-471 (606)
32 PRK11361 acetoacetate metaboli 99.6 3.2E-15 7E-20 139.6 10.4 193 29-246 86-302 (457)
33 TIGR02880 cbbX_cfxQ probable R 99.6 2E-14 4.3E-19 127.1 13.4 141 67-224 11-169 (284)
34 KOG0989|consensus 99.6 6E-15 1.3E-19 128.8 9.8 128 79-229 37-173 (346)
35 PRK11388 DNA-binding transcrip 99.6 5E-15 1.1E-19 144.3 9.6 144 79-246 326-481 (638)
36 TIGR02881 spore_V_K stage V sp 99.6 3.8E-14 8.3E-19 123.7 13.2 131 75-223 4-151 (261)
37 PRK10923 glnG nitrogen regulat 99.6 4E-15 8.6E-20 139.7 6.6 146 79-246 139-297 (469)
38 PRK15429 formate hydrogenlyase 99.6 1.4E-14 2.9E-19 142.3 9.9 146 79-246 377-535 (686)
39 PF05496 RuvB_N: Holliday junc 99.6 3.5E-14 7.6E-19 120.2 11.0 105 79-207 25-130 (233)
40 KOG2004|consensus 99.5 2E-14 4.4E-19 136.8 10.2 156 67-238 400-576 (906)
41 PRK15115 response regulator Gl 99.5 2.9E-14 6.2E-19 133.0 8.1 187 30-246 88-293 (444)
42 COG1223 Predicted ATPase (AAA+ 99.5 9.5E-14 2.1E-18 119.1 9.8 126 79-225 122-264 (368)
43 PRK14956 DNA polymerase III su 99.5 2.5E-13 5.4E-18 126.8 12.9 130 79-224 19-160 (484)
44 PRK14958 DNA polymerase III su 99.5 2.3E-13 4.9E-18 129.1 12.5 130 79-225 17-159 (509)
45 PRK13531 regulatory ATPase Rav 99.5 9.1E-14 2E-18 129.6 9.6 140 67-226 9-158 (498)
46 PRK12323 DNA polymerase III su 99.5 2.5E-13 5.5E-18 130.1 12.8 133 79-226 17-165 (700)
47 PLN03025 replication factor C 99.5 3E-13 6.5E-18 121.4 12.6 125 80-227 15-141 (319)
48 PF14532 Sigma54_activ_2: Sigm 99.5 2.7E-14 5.8E-19 113.0 4.9 113 81-228 1-113 (138)
49 PRK07940 DNA polymerase III su 99.5 2.5E-13 5.3E-18 125.0 10.9 138 79-224 6-156 (394)
50 PRK14949 DNA polymerase III su 99.5 5.2E-13 1.1E-17 131.6 13.1 132 79-227 17-161 (944)
51 PF00004 AAA: ATPase family as 99.5 7.1E-13 1.5E-17 102.5 11.0 108 110-234 1-120 (132)
52 TIGR02640 gas_vesic_GvpN gas v 99.5 4.2E-13 9E-18 117.3 10.5 127 84-225 4-161 (262)
53 COG1219 ClpX ATP-dependent pro 99.5 3.1E-13 6.7E-18 118.8 9.3 142 67-221 50-233 (408)
54 PRK07003 DNA polymerase III su 99.4 5.9E-13 1.3E-17 129.2 12.0 131 79-226 17-160 (830)
55 PRK07994 DNA polymerase III su 99.4 8.9E-13 1.9E-17 127.4 12.7 131 79-226 17-160 (647)
56 COG1222 RPT1 ATP-dependent 26S 99.4 6E-13 1.3E-17 118.6 10.3 129 79-225 152-300 (406)
57 PRK10787 DNA-binding ATP-depen 99.4 6.2E-13 1.4E-17 131.7 11.4 156 66-237 310-485 (784)
58 PRK14952 DNA polymerase III su 99.4 1.6E-12 3.6E-17 124.7 13.7 130 79-225 14-158 (584)
59 TIGR01818 ntrC nitrogen regula 99.4 1.4E-13 3E-18 129.0 6.2 146 79-246 135-293 (463)
60 PRK07764 DNA polymerase III su 99.4 1.3E-12 2.8E-17 129.7 13.2 130 79-225 16-160 (824)
61 PRK14961 DNA polymerase III su 99.4 1.7E-12 3.8E-17 118.5 12.0 126 79-224 17-158 (363)
62 COG4650 RtcR Sigma54-dependent 99.4 3.7E-13 8.1E-18 117.5 7.1 150 76-246 182-347 (531)
63 COG2256 MGS1 ATPase related to 99.4 1.1E-12 2.4E-17 118.4 10.3 106 79-207 25-133 (436)
64 PRK14964 DNA polymerase III su 99.4 2.1E-12 4.4E-17 121.5 12.3 129 79-224 14-155 (491)
65 PRK05201 hslU ATP-dependent pr 99.4 1.9E-12 4.2E-17 118.8 11.8 75 67-149 4-84 (443)
66 PF13177 DNA_pol3_delta2: DNA 99.4 1.4E-12 3E-17 106.2 9.6 127 82-228 1-145 (162)
67 PRK14960 DNA polymerase III su 99.4 2.8E-12 6E-17 123.3 12.8 131 79-226 16-159 (702)
68 TIGR02902 spore_lonB ATP-depen 99.4 1.2E-12 2.5E-17 125.0 10.0 120 79-206 66-203 (531)
69 PRK14951 DNA polymerase III su 99.4 3.6E-12 7.8E-17 122.9 13.0 131 79-224 17-163 (618)
70 PRK14962 DNA polymerase III su 99.4 6.2E-12 1.3E-16 118.3 14.0 126 79-224 15-156 (472)
71 PRK14965 DNA polymerase III su 99.4 2.9E-12 6.3E-17 123.4 11.9 130 79-225 17-159 (576)
72 PRK14957 DNA polymerase III su 99.4 3.9E-12 8.4E-17 121.2 12.6 130 79-224 17-158 (546)
73 PRK14959 DNA polymerase III su 99.4 4.2E-12 9E-17 122.0 12.6 132 79-226 17-160 (624)
74 PRK10365 transcriptional regul 99.4 4.5E-13 9.7E-18 124.6 5.7 145 80-246 141-298 (441)
75 PRK06645 DNA polymerase III su 99.4 4.4E-12 9.6E-17 120.0 12.3 131 79-224 22-167 (507)
76 PRK14969 DNA polymerase III su 99.4 4.8E-12 1E-16 120.7 12.5 126 79-225 17-159 (527)
77 CHL00195 ycf46 Ycf46; Provisio 99.4 4.9E-12 1.1E-16 119.2 12.0 144 79-246 229-387 (489)
78 KOG0991|consensus 99.4 2.2E-12 4.8E-17 109.2 8.6 129 79-230 28-158 (333)
79 COG0470 HolB ATPase involved i 99.4 4E-12 8.6E-17 113.2 10.6 130 80-228 3-152 (325)
80 PRK14955 DNA polymerase III su 99.4 7.9E-12 1.7E-16 115.4 12.8 131 79-224 17-166 (397)
81 PRK05563 DNA polymerase III su 99.4 5.2E-12 1.1E-16 121.2 11.8 130 79-224 17-158 (559)
82 PHA02244 ATPase-like protein 99.4 3.7E-12 8.1E-17 115.2 9.9 139 79-237 97-253 (383)
83 PRK08691 DNA polymerase III su 99.4 9.9E-12 2.1E-16 120.3 13.3 131 79-226 17-160 (709)
84 PRK12402 replication factor C 99.3 8E-12 1.7E-16 112.1 11.9 129 79-225 16-165 (337)
85 KOG0733|consensus 99.3 5.6E-12 1.2E-16 118.7 10.7 146 80-246 192-356 (802)
86 TIGR00390 hslU ATP-dependent p 99.3 9.4E-12 2E-16 114.2 12.0 64 69-132 3-72 (441)
87 PRK05896 DNA polymerase III su 99.3 9.8E-12 2.1E-16 119.0 12.4 130 79-224 17-158 (605)
88 PRK08451 DNA polymerase III su 99.3 1.4E-11 2.9E-16 117.0 13.2 127 79-225 15-157 (535)
89 PRK07133 DNA polymerase III su 99.3 1.3E-11 2.7E-16 120.4 12.7 131 79-224 19-157 (725)
90 PRK09111 DNA polymerase III su 99.3 1.2E-11 2.7E-16 119.1 12.4 133 79-226 25-173 (598)
91 PRK14963 DNA polymerase III su 99.3 1.5E-11 3.3E-16 116.5 12.8 128 79-224 15-155 (504)
92 PHA02544 44 clamp loader, smal 99.3 2.6E-11 5.7E-16 108.2 13.6 118 80-225 23-141 (316)
93 PRK06305 DNA polymerase III su 99.3 1.7E-11 3.7E-16 114.9 12.7 131 79-224 18-160 (451)
94 PRK14954 DNA polymerase III su 99.3 1.9E-11 4.2E-16 118.1 13.2 131 79-224 17-166 (620)
95 PRK03992 proteasome-activating 99.3 1.9E-11 4.1E-16 112.7 12.3 133 79-225 132-280 (389)
96 PRK14948 DNA polymerase III su 99.3 2E-11 4.4E-16 118.2 12.9 131 79-224 17-160 (620)
97 PRK00440 rfc replication facto 99.3 3E-11 6.6E-16 107.4 12.9 124 80-226 19-143 (319)
98 COG2812 DnaX DNA polymerase II 99.3 4E-12 8.7E-17 119.6 7.2 130 79-224 17-158 (515)
99 PRK06647 DNA polymerase III su 99.3 2.7E-11 5.9E-16 116.2 13.0 129 79-224 17-158 (563)
100 PRK07399 DNA polymerase III su 99.3 2.5E-11 5.4E-16 108.8 11.4 128 79-225 5-163 (314)
101 KOG0733|consensus 99.3 2.7E-11 5.8E-16 114.2 11.3 129 80-230 513-661 (802)
102 TIGR03689 pup_AAA proteasome A 99.3 3.8E-11 8.2E-16 113.5 12.5 154 79-244 183-358 (512)
103 PRK14953 DNA polymerase III su 99.3 3.1E-11 6.7E-16 114.0 11.8 130 79-224 17-158 (486)
104 PRK14971 DNA polymerase III su 99.3 4.4E-11 9.6E-16 115.8 12.5 127 79-224 18-160 (614)
105 PRK13342 recombination factor 99.3 3.6E-11 7.7E-16 111.6 11.2 105 79-206 13-120 (413)
106 PRK12377 putative replication 99.3 1.1E-10 2.4E-15 101.2 13.5 129 82-232 82-213 (248)
107 PRK05564 DNA polymerase III su 99.3 6.9E-11 1.5E-15 105.8 12.5 128 79-224 5-132 (313)
108 TIGR00635 ruvB Holliday juncti 99.3 5.5E-11 1.2E-15 105.6 11.5 105 79-206 5-109 (305)
109 TIGR02397 dnaX_nterm DNA polym 99.2 6.9E-11 1.5E-15 106.9 12.1 129 79-224 15-156 (355)
110 COG2255 RuvB Holliday junction 99.2 3.7E-11 8E-16 104.4 9.7 122 79-225 27-161 (332)
111 PRK14950 DNA polymerase III su 99.2 6.1E-11 1.3E-15 114.6 12.3 131 79-224 17-159 (585)
112 PRK09112 DNA polymerase III su 99.2 1.2E-10 2.5E-15 106.0 13.1 132 79-225 24-181 (351)
113 COG0714 MoxR-like ATPases [Gen 99.2 2E-11 4.3E-16 110.0 7.9 149 69-236 15-179 (329)
114 PRK14970 DNA polymerase III su 99.2 1.1E-10 2.4E-15 106.5 13.0 128 79-224 18-147 (367)
115 PRK07471 DNA polymerase III su 99.2 1.1E-10 2.5E-15 106.5 12.9 133 79-226 20-182 (365)
116 PRK08058 DNA polymerase III su 99.2 5.9E-11 1.3E-15 107.1 10.8 128 79-224 6-149 (329)
117 KOG2028|consensus 99.2 2.9E-11 6.3E-16 108.2 8.5 113 79-207 139-251 (554)
118 KOG0745|consensus 99.2 4.6E-11 1E-15 108.8 9.3 146 66-221 133-362 (564)
119 KOG0738|consensus 99.2 7.1E-11 1.5E-15 106.4 10.3 141 79-239 213-375 (491)
120 PRK08116 hypothetical protein; 99.2 5.8E-11 1.3E-15 104.2 9.6 106 107-232 114-228 (268)
121 TIGR01242 26Sp45 26S proteasom 99.2 7.6E-11 1.6E-15 107.7 10.7 130 79-225 123-271 (364)
122 KOG0736|consensus 99.2 8.3E-11 1.8E-15 113.2 11.1 98 79-192 673-778 (953)
123 TIGR01243 CDC48 AAA family ATP 99.2 9.5E-11 2.1E-15 116.0 12.0 130 79-225 454-600 (733)
124 PF07728 AAA_5: AAA domain (dy 99.2 1.6E-11 3.5E-16 96.6 5.1 106 110-226 2-125 (139)
125 TIGR02903 spore_lon_C ATP-depe 99.2 5.8E-11 1.3E-15 115.2 9.8 118 79-206 155-293 (615)
126 PLN00020 ribulose bisphosphate 99.2 2.6E-10 5.7E-15 103.0 13.0 133 96-244 138-293 (413)
127 PTZ00454 26S protease regulato 99.2 1.3E-10 2.8E-15 107.3 11.1 149 79-246 146-311 (398)
128 PRK04195 replication factor C 99.2 1.6E-10 3.5E-15 109.2 11.9 116 80-225 16-140 (482)
129 TIGR01241 FtsH_fam ATP-depende 99.2 1.3E-10 2.8E-15 110.3 10.6 129 79-225 56-203 (495)
130 PRK00080 ruvB Holliday junctio 99.2 2.3E-10 4.9E-15 103.1 11.3 124 79-225 26-160 (328)
131 KOG0730|consensus 99.2 8.4E-11 1.8E-15 111.7 8.8 126 80-225 436-580 (693)
132 CHL00081 chlI Mg-protoporyphyr 99.2 5E-11 1.1E-15 107.9 6.7 149 79-236 18-208 (350)
133 cd00009 AAA The AAA+ (ATPases 99.2 5.1E-10 1.1E-14 86.6 11.5 111 109-227 21-132 (151)
134 TIGR00678 holB DNA polymerase 99.2 3.4E-10 7.3E-15 93.9 11.0 109 106-225 13-136 (188)
135 KOG0734|consensus 99.1 2.8E-10 6E-15 106.1 10.9 140 79-243 305-463 (752)
136 PRK05707 DNA polymerase III su 99.1 7.1E-10 1.5E-14 99.9 13.1 112 106-226 21-147 (328)
137 PTZ00361 26 proteosome regulat 99.1 2.1E-10 4.6E-15 106.8 9.6 147 79-244 184-347 (438)
138 CHL00176 ftsH cell division pr 99.1 5.4E-10 1.2E-14 108.6 12.7 144 79-244 184-346 (638)
139 PRK13341 recombination factor 99.1 6.9E-10 1.5E-14 109.2 12.7 105 79-206 29-137 (725)
140 PRK13407 bchI magnesium chelat 99.1 1.5E-10 3.3E-15 104.4 7.1 146 79-235 9-191 (334)
141 PF01695 IstB_IS21: IstB-like 99.1 1.2E-10 2.6E-15 96.2 5.8 109 108-235 48-160 (178)
142 PF01078 Mg_chelatase: Magnesi 99.1 3.8E-10 8.2E-15 94.8 8.8 133 79-224 4-158 (206)
143 KOG0744|consensus 99.1 5.1E-10 1.1E-14 98.9 9.7 111 109-227 179-309 (423)
144 PRK06871 DNA polymerase III su 99.1 1.8E-09 3.9E-14 97.1 13.4 127 83-225 7-147 (325)
145 PRK07993 DNA polymerase III su 99.1 8.3E-10 1.8E-14 99.8 10.8 128 83-225 7-148 (334)
146 PRK08769 DNA polymerase III su 99.1 1.1E-09 2.5E-14 98.1 11.5 127 82-226 8-154 (319)
147 COG0464 SpoVK ATPases of the A 99.1 1.2E-09 2.7E-14 103.5 12.1 144 80-244 244-403 (494)
148 TIGR01243 CDC48 AAA family ATP 99.1 1.3E-09 2.8E-14 108.0 12.7 129 80-225 180-324 (733)
149 PRK08939 primosomal protein Dn 99.0 2.3E-09 4.9E-14 95.8 12.1 106 108-233 157-269 (306)
150 KOG0731|consensus 99.0 8.7E-10 1.9E-14 107.3 9.8 141 79-244 312-475 (774)
151 TIGR02639 ClpA ATP-dependent C 99.0 1E-09 2.3E-14 108.6 10.6 124 79-224 183-320 (731)
152 PRK00411 cdc6 cell division co 99.0 3.3E-09 7.1E-14 97.4 13.2 132 79-224 31-182 (394)
153 smart00763 AAA_PrkA PrkA AAA d 99.0 3.7E-09 8.1E-14 95.7 12.9 51 79-131 52-102 (361)
154 PRK07952 DNA replication prote 99.0 3.4E-09 7.4E-14 91.7 12.1 109 109-233 101-213 (244)
155 TIGR02442 Cob-chelat-sub cobal 99.0 3.9E-10 8.5E-15 109.9 6.8 147 79-236 5-190 (633)
156 PRK08181 transposase; Validate 99.0 1.1E-09 2.3E-14 96.2 8.9 104 109-233 108-217 (269)
157 KOG0727|consensus 99.0 2.1E-09 4.5E-14 92.4 10.2 127 80-225 157-304 (408)
158 TIGR02030 BchI-ChlI magnesium 99.0 8.1E-10 1.8E-14 99.8 7.6 149 79-235 5-194 (337)
159 COG1484 DnaC DNA replication p 99.0 2.1E-09 4.6E-14 93.6 9.9 108 106-234 104-218 (254)
160 TIGR03420 DnaA_homol_Hda DnaA 99.0 2.9E-09 6.3E-14 90.3 10.4 97 107-228 38-136 (226)
161 TIGR03345 VI_ClpV1 type VI sec 99.0 2.5E-09 5.4E-14 107.3 11.3 125 79-224 188-325 (852)
162 PRK06526 transposase; Provisio 99.0 2.4E-09 5.3E-14 93.2 9.8 105 109-232 100-208 (254)
163 KOG0729|consensus 99.0 4E-09 8.7E-14 91.3 10.8 129 79-225 178-326 (435)
164 PRK06090 DNA polymerase III su 99.0 7.3E-09 1.6E-13 92.9 13.0 129 83-226 8-149 (319)
165 PRK06835 DNA replication prote 99.0 7.6E-09 1.6E-13 93.3 12.9 109 109-232 185-296 (329)
166 TIGR02928 orc1/cdc6 family rep 99.0 5.3E-09 1.2E-13 95.0 11.9 138 79-225 16-175 (365)
167 PRK10865 protein disaggregatio 99.0 2.8E-09 6.2E-14 107.0 10.9 126 79-225 179-317 (857)
168 PRK05917 DNA polymerase III su 99.0 6.5E-09 1.4E-13 91.8 11.6 111 106-227 18-137 (290)
169 PRK06893 DNA replication initi 99.0 3.6E-09 7.8E-14 90.7 9.8 98 109-230 41-140 (229)
170 PRK06964 DNA polymerase III su 99.0 3E-09 6.5E-14 96.3 9.5 43 177-226 131-173 (342)
171 TIGR01650 PD_CobS cobaltochela 99.0 3.1E-09 6.6E-14 95.2 9.3 107 109-224 66-187 (327)
172 KOG0651|consensus 98.9 4.7E-09 1E-13 92.4 9.7 133 80-226 134-282 (388)
173 PRK08084 DNA replication initi 98.9 1.1E-08 2.4E-13 88.0 12.0 108 109-240 47-159 (235)
174 PRK08727 hypothetical protein; 98.9 1E-08 2.2E-13 88.1 11.4 102 109-235 43-146 (233)
175 TIGR00368 Mg chelatase-related 98.9 2.3E-09 5.1E-14 101.5 8.1 129 79-224 193-347 (499)
176 KOG0739|consensus 98.9 3.7E-09 8E-14 92.7 8.3 145 67-232 110-289 (439)
177 PF07726 AAA_3: ATPase family 98.9 8.5E-10 1.8E-14 85.8 3.8 102 110-224 2-112 (131)
178 smart00350 MCM minichromosome 98.9 2.5E-09 5.5E-14 101.8 7.7 141 72-224 197-352 (509)
179 smart00382 AAA ATPases associa 98.9 9.6E-09 2.1E-13 78.5 9.3 112 108-224 3-125 (148)
180 COG1474 CDC6 Cdc6-related prot 98.9 1.9E-08 4.1E-13 92.0 12.7 132 80-225 19-166 (366)
181 PRK06921 hypothetical protein; 98.9 1.5E-08 3.2E-13 88.9 11.6 104 108-231 118-231 (266)
182 PRK08903 DnaA regulatory inact 98.9 1.2E-08 2.6E-13 86.9 10.6 90 109-226 44-133 (227)
183 CHL00095 clpC Clp protease ATP 98.9 7.3E-09 1.6E-13 103.9 10.7 115 79-206 180-307 (821)
184 PRK04132 replication factor C 98.9 6.3E-09 1.4E-13 103.4 9.7 98 111-227 568-672 (846)
185 CHL00206 ycf2 Ycf2; Provisiona 98.9 6.9E-09 1.5E-13 108.4 10.0 124 107-244 1630-1797(2281)
186 KOG0728|consensus 98.9 1.5E-08 3.4E-13 87.0 10.3 127 80-224 149-295 (404)
187 PRK05818 DNA polymerase III su 98.9 8.5E-09 1.8E-13 89.5 8.8 111 106-226 6-129 (261)
188 TIGR03346 chaperone_ClpB ATP-d 98.8 1.7E-08 3.6E-13 101.6 10.8 125 79-224 174-311 (852)
189 PTZ00111 DNA replication licen 98.8 8.3E-09 1.8E-13 102.5 8.2 129 73-207 445-586 (915)
190 PRK11034 clpA ATP-dependent Cl 98.8 1.2E-08 2.6E-13 101.0 9.2 125 79-225 187-325 (758)
191 KOG0735|consensus 98.8 2.7E-08 5.9E-13 95.6 10.7 133 80-233 669-820 (952)
192 PRK14087 dnaA chromosomal repl 98.8 7.1E-08 1.5E-12 90.6 13.1 136 75-230 113-254 (450)
193 TIGR00362 DnaA chromosomal rep 98.8 2.2E-08 4.8E-13 92.7 9.5 138 76-231 109-248 (405)
194 KOG0726|consensus 98.8 1.4E-08 3E-13 88.9 7.3 128 79-224 186-333 (440)
195 PTZ00112 origin recognition co 98.8 4.8E-08 1E-12 96.5 11.7 138 79-224 756-911 (1164)
196 PRK08699 DNA polymerase III su 98.8 6.9E-08 1.5E-12 87.0 11.7 113 106-226 20-154 (325)
197 PRK00149 dnaA chromosomal repl 98.8 3.2E-08 6.9E-13 92.9 9.8 114 109-240 150-272 (450)
198 TIGR02031 BchD-ChlD magnesium 98.8 7.4E-09 1.6E-13 100.2 5.5 110 109-225 18-137 (589)
199 PRK07276 DNA polymerase III su 98.8 6.2E-08 1.3E-12 85.8 10.9 124 82-225 6-144 (290)
200 PRK09183 transposase/IS protei 98.8 2.4E-08 5.2E-13 87.2 8.0 106 109-233 104-214 (259)
201 PRK14088 dnaA chromosomal repl 98.8 6.6E-08 1.4E-12 90.6 11.4 135 76-232 104-244 (440)
202 KOG0652|consensus 98.8 7.3E-08 1.6E-12 83.4 10.5 128 79-224 172-319 (424)
203 PF13401 AAA_22: AAA domain; P 98.8 3.9E-08 8.4E-13 76.0 8.1 106 108-224 5-125 (131)
204 KOG0990|consensus 98.7 6.8E-09 1.5E-13 91.6 3.3 127 79-227 42-173 (360)
205 COG0465 HflB ATP-dependent Zn 98.7 3.5E-08 7.5E-13 94.4 8.3 141 79-245 151-314 (596)
206 PRK10733 hflB ATP-dependent me 98.7 6.8E-08 1.5E-12 94.5 10.4 130 79-225 153-300 (644)
207 PF00308 Bac_DnaA: Bacterial d 98.7 5.2E-08 1.1E-12 83.0 8.0 113 110-240 37-158 (219)
208 PRK11331 5-methylcytosine-spec 98.7 1.7E-07 3.6E-12 87.3 11.6 117 109-229 196-339 (459)
209 COG0606 Predicted ATPase with 98.7 2.2E-08 4.8E-13 92.7 5.7 132 79-224 180-335 (490)
210 TIGR00764 lon_rel lon-related 98.7 3.1E-08 6.7E-13 96.1 6.9 51 73-133 13-63 (608)
211 PRK09862 putative ATP-dependen 98.7 5.7E-08 1.2E-12 92.0 8.3 113 109-225 212-347 (506)
212 PRK05642 DNA replication initi 98.7 1.2E-07 2.5E-12 81.6 9.4 97 109-230 47-145 (234)
213 PRK07132 DNA polymerase III su 98.7 2.1E-07 4.6E-12 82.9 11.2 101 109-225 20-130 (299)
214 PRK14086 dnaA chromosomal repl 98.6 1.4E-07 3.1E-12 90.8 9.9 104 109-230 316-425 (617)
215 KOG0732|consensus 98.6 1.5E-07 3.2E-12 94.4 10.0 135 80-226 267-417 (1080)
216 KOG0737|consensus 98.6 2.4E-07 5.3E-12 83.3 9.4 98 80-190 94-198 (386)
217 KOG0741|consensus 98.6 6.5E-08 1.4E-12 90.4 5.4 107 109-232 258-385 (744)
218 PRK12422 chromosomal replicati 98.6 5E-07 1.1E-11 84.7 11.3 103 109-231 143-251 (445)
219 KOG0730|consensus 98.6 1.9E-07 4.1E-12 89.3 8.4 146 80-246 186-346 (693)
220 PRK13765 ATP-dependent proteas 98.6 9.5E-08 2.1E-12 92.9 6.2 49 75-133 28-76 (637)
221 COG1239 ChlI Mg-chelatase subu 98.5 2.8E-07 6.1E-12 84.3 8.4 65 172-236 138-208 (423)
222 KOG0743|consensus 98.5 6.1E-07 1.3E-11 82.7 10.1 119 83-224 206-347 (457)
223 COG0542 clpA ATP-binding subun 98.5 6.6E-07 1.4E-11 88.0 10.9 116 79-207 171-300 (786)
224 PF13173 AAA_14: AAA domain 98.5 6.8E-07 1.5E-11 69.5 9.0 83 109-205 4-87 (128)
225 PF05673 DUF815: Protein of un 98.5 2.2E-06 4.9E-11 73.7 12.7 121 79-224 28-150 (249)
226 KOG1969|consensus 98.5 6.4E-07 1.4E-11 86.5 10.3 82 109-203 328-412 (877)
227 KOG2035|consensus 98.5 1.3E-06 2.9E-11 76.1 10.1 111 109-229 36-171 (351)
228 PF00910 RNA_helicase: RNA hel 98.5 1E-06 2.3E-11 66.5 8.4 95 110-224 1-107 (107)
229 PRK06620 hypothetical protein; 98.4 1.2E-06 2.6E-11 74.4 9.5 22 109-130 46-67 (214)
230 KOG0742|consensus 98.4 1.7E-06 3.7E-11 79.0 10.3 103 109-227 386-497 (630)
231 PF03969 AFG1_ATPase: AFG1-lik 98.4 3.9E-07 8.5E-12 83.2 5.8 106 104-229 59-172 (362)
232 COG1220 HslU ATP-dependent pro 98.4 2.2E-06 4.7E-11 76.7 9.3 74 69-150 6-85 (444)
233 TIGR02688 conserved hypothetic 98.3 6.4E-06 1.4E-10 76.2 11.6 96 109-225 211-313 (449)
234 KOG0740|consensus 98.3 4.6E-06 9.9E-11 77.1 10.6 138 80-235 155-309 (428)
235 PRK12723 flagellar biosynthesi 98.3 2.7E-05 5.9E-10 71.8 15.4 122 105-236 172-309 (388)
236 TIGR03015 pepcterm_ATPase puta 98.3 9.5E-06 2.1E-10 70.5 11.1 90 109-203 45-148 (269)
237 TIGR00602 rad24 checkpoint pro 98.3 6.4E-06 1.4E-10 80.2 10.9 51 79-132 85-135 (637)
238 PRK14974 cell division protein 98.3 2.9E-05 6.2E-10 70.3 14.2 29 105-133 138-166 (336)
239 PF13191 AAA_16: AAA ATPase do 98.2 5.1E-06 1.1E-10 67.6 8.2 49 80-133 2-50 (185)
240 PF00448 SRP54: SRP54-type pro 98.2 1.8E-05 3.9E-10 66.4 11.0 117 107-239 1-139 (196)
241 KOG0741|consensus 98.2 1.9E-05 4.1E-10 74.3 11.9 99 105-224 535-649 (744)
242 PF06068 TIP49: TIP49 C-termin 98.2 8.6E-06 1.9E-10 73.9 9.4 80 79-178 25-107 (398)
243 COG1618 Predicted nucleotide k 98.2 2.9E-05 6.3E-10 62.7 11.1 28 106-133 4-31 (179)
244 COG1224 TIP49 DNA helicase TIP 98.1 9.3E-06 2E-10 73.1 8.0 66 79-156 40-108 (450)
245 PRK09087 hypothetical protein; 98.1 1.3E-05 2.8E-10 68.7 8.6 88 109-231 46-133 (226)
246 PRK10536 hypothetical protein; 98.1 4.3E-05 9.3E-10 66.5 11.9 27 180-206 178-204 (262)
247 PF00931 NB-ARC: NB-ARC domain 98.1 9.1E-06 2E-10 71.1 7.4 39 86-130 4-42 (287)
248 PF12774 AAA_6: Hydrolytic ATP 98.1 3.6E-05 7.8E-10 66.2 10.7 75 109-202 34-108 (231)
249 cd01120 RecA-like_NTPases RecA 98.0 1.2E-05 2.5E-10 63.6 6.2 24 110-133 2-25 (165)
250 PHA00729 NTP-binding motif con 98.0 5.5E-05 1.2E-09 64.7 10.6 25 108-132 18-42 (226)
251 PF13604 AAA_30: AAA domain; P 98.0 6.3E-05 1.4E-09 62.9 10.8 85 109-204 20-119 (196)
252 PRK06581 DNA polymerase III su 98.0 9.3E-05 2E-09 63.8 11.7 106 109-225 17-129 (263)
253 PF05621 TniB: Bacterial TniB 98.0 7.7E-05 1.7E-09 66.2 11.4 118 68-190 24-157 (302)
254 COG0593 DnaA ATPase involved i 98.0 3.6E-05 7.8E-10 71.1 9.7 134 76-232 86-225 (408)
255 PRK04296 thymidine kinase; Pro 98.0 4.7E-05 1E-09 63.4 9.2 25 109-133 4-28 (190)
256 PRK13406 bchD magnesium chelat 98.0 1.3E-05 2.8E-10 77.5 6.6 91 109-208 27-123 (584)
257 PRK11889 flhF flagellar biosyn 98.0 0.00025 5.5E-09 65.4 14.3 136 85-235 218-373 (436)
258 PF02562 PhoH: PhoH-like prote 98.0 2.2E-05 4.7E-10 66.2 6.9 27 179-205 120-146 (205)
259 PF00493 MCM: MCM2/3/5 family 97.9 8.1E-07 1.8E-11 80.3 -2.2 142 70-224 16-173 (331)
260 cd00561 CobA_CobO_BtuR ATP:cor 97.9 0.00012 2.6E-09 59.4 10.6 113 110-232 5-145 (159)
261 KOG0478|consensus 97.9 9.2E-06 2E-10 78.1 4.5 125 72-208 423-556 (804)
262 KOG0735|consensus 97.9 3.9E-05 8.5E-10 74.4 8.6 74 109-190 433-506 (952)
263 PF05729 NACHT: NACHT domain 97.9 0.00014 3.1E-09 57.7 10.5 25 109-133 2-26 (166)
264 PRK15455 PrkA family serine pr 97.9 1.9E-05 4.1E-10 75.7 6.2 51 79-131 77-127 (644)
265 PF03266 NTPase_1: NTPase; In 97.9 6.7E-06 1.4E-10 67.3 2.2 23 110-132 2-24 (168)
266 PRK00771 signal recognition pa 97.8 0.0006 1.3E-08 63.9 15.0 29 105-133 93-121 (437)
267 PHA02774 E1; Provisional 97.8 9.6E-05 2.1E-09 70.8 9.2 111 89-228 419-536 (613)
268 TIGR00064 ftsY signal recognit 97.8 0.0011 2.4E-08 58.3 15.3 50 84-133 44-98 (272)
269 PF01637 Arch_ATPase: Archaeal 97.8 6E-05 1.3E-09 63.2 7.1 43 81-131 2-44 (234)
270 PRK12724 flagellar biosynthesi 97.8 0.0013 2.7E-08 61.3 16.2 120 106-236 222-356 (432)
271 TIGR01618 phage_P_loop phage n 97.8 2.3E-05 5.1E-10 66.8 4.5 90 105-198 10-101 (220)
272 COG2607 Predicted ATPase (AAA+ 97.8 0.00059 1.3E-08 58.7 12.5 120 80-224 62-183 (287)
273 PF05272 VirE: Virulence-assoc 97.8 0.0001 2.2E-09 62.0 7.5 91 106-224 51-149 (198)
274 PRK14722 flhF flagellar biosyn 97.8 0.00076 1.7E-08 61.9 13.7 122 106-239 136-272 (374)
275 TIGR01425 SRP54_euk signal rec 97.8 0.0011 2.4E-08 61.9 14.9 112 105-230 98-230 (429)
276 PF09848 DUF2075: Uncharacteri 97.7 5.5E-05 1.2E-09 68.9 6.2 23 109-131 3-25 (352)
277 PRK05703 flhF flagellar biosyn 97.7 0.0014 3.1E-08 61.2 15.4 117 107-235 221-353 (424)
278 COG1485 Predicted ATPase [Gene 97.7 6.2E-05 1.3E-09 67.8 6.0 105 107-228 65-174 (367)
279 PRK10867 signal recognition pa 97.7 0.0017 3.8E-08 60.7 15.9 29 105-133 98-126 (433)
280 KOG0736|consensus 97.7 0.0004 8.6E-09 68.1 11.6 145 65-225 390-543 (953)
281 PF12775 AAA_7: P-loop contain 97.7 0.00011 2.5E-09 64.6 6.6 110 109-234 35-169 (272)
282 COG1241 MCM2 Predicted ATPase 97.6 9.8E-05 2.1E-09 72.2 6.6 124 74-207 282-412 (682)
283 cd01124 KaiC KaiC is a circadi 97.6 0.00021 4.6E-09 58.4 7.6 24 110-133 2-25 (187)
284 KOG0477|consensus 97.6 6.7E-05 1.5E-09 71.8 4.7 138 79-224 450-598 (854)
285 PRK10416 signal recognition pa 97.6 0.0031 6.6E-08 56.8 14.8 143 84-237 86-256 (318)
286 PF07693 KAP_NTPase: KAP famil 97.6 0.001 2.2E-08 59.3 11.6 41 92-133 6-46 (325)
287 PF13207 AAA_17: AAA domain; P 97.6 7.3E-05 1.6E-09 56.9 3.7 23 109-131 1-23 (121)
288 PF06414 Zeta_toxin: Zeta toxi 97.6 0.0027 5.9E-08 53.0 13.3 42 104-152 12-53 (199)
289 PRK12727 flagellar biosynthesi 97.5 0.0028 6E-08 60.6 14.1 123 106-236 349-481 (559)
290 TIGR02768 TraA_Ti Ti-type conj 97.5 0.00031 6.8E-09 70.0 8.1 87 109-204 370-465 (744)
291 TIGR00959 ffh signal recogniti 97.5 0.013 2.8E-07 54.9 18.1 28 105-132 97-124 (428)
292 KOG0480|consensus 97.5 0.00012 2.6E-09 70.3 4.2 136 75-226 342-486 (764)
293 PF06048 DUF927: Domain of unk 97.5 0.0016 3.4E-08 57.7 11.2 117 67-206 154-270 (286)
294 KOG1942|consensus 97.5 0.00038 8.3E-09 61.5 7.1 64 76-151 36-102 (456)
295 COG4088 Predicted nucleotide k 97.4 0.0021 4.6E-08 54.2 10.9 24 110-133 4-27 (261)
296 KOG1970|consensus 97.4 0.0016 3.4E-08 61.9 11.2 24 108-131 111-134 (634)
297 PF01583 APS_kinase: Adenylyls 97.4 0.00037 8.1E-09 56.3 6.2 28 106-133 1-28 (156)
298 TIGR01448 recD_rel helicase, p 97.4 0.00094 2E-08 66.4 10.1 90 109-205 340-443 (720)
299 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00035 7.5E-09 63.3 6.3 52 78-131 61-112 (358)
300 PF05609 LAP1C: Lamina-associa 97.4 0.0088 1.9E-07 56.1 15.6 163 70-243 251-424 (465)
301 TIGR00708 cobA cob(I)alamin ad 97.4 0.0037 8.1E-08 51.3 11.7 113 106-232 5-147 (173)
302 KOG2227|consensus 97.4 0.0008 1.7E-08 62.7 8.6 134 79-224 151-298 (529)
303 cd01131 PilT Pilus retraction 97.4 0.0012 2.5E-08 55.3 8.7 24 109-132 3-26 (198)
304 PRK13695 putative NTPase; Prov 97.4 0.0023 5E-08 52.1 10.3 24 109-132 2-25 (174)
305 cd00046 DEXDc DEAD-like helica 97.4 0.0018 3.9E-08 48.9 9.1 25 109-133 2-26 (144)
306 cd01128 rho_factor Transcripti 97.4 0.00053 1.2E-08 59.6 6.7 24 109-132 18-41 (249)
307 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0024 5.2E-08 54.1 10.6 23 108-130 30-52 (213)
308 COG0552 FtsY Signal recognitio 97.3 0.011 2.5E-07 53.1 15.0 116 104-232 136-277 (340)
309 PF05970 PIF1: PIF1-like helic 97.3 0.00071 1.5E-08 62.0 7.5 43 83-133 6-48 (364)
310 TIGR01447 recD exodeoxyribonuc 97.3 0.0028 6.1E-08 61.6 11.9 27 179-205 260-286 (586)
311 cd03115 SRP The signal recogni 97.3 0.0086 1.9E-07 48.5 13.2 25 109-133 2-26 (173)
312 PRK06067 flagellar accessory p 97.3 0.0017 3.6E-08 55.5 9.3 26 107-132 25-50 (234)
313 smart00487 DEXDc DEAD-like hel 97.3 0.0025 5.3E-08 51.3 9.6 48 179-233 130-178 (201)
314 PF03215 Rad17: Rad17 cell cyc 97.3 0.0005 1.1E-08 65.8 6.1 50 80-132 21-70 (519)
315 KOG1514|consensus 97.3 0.0028 6E-08 61.7 11.0 138 79-224 397-550 (767)
316 PRK06696 uridine kinase; Valid 97.3 0.00053 1.1E-08 58.4 5.6 30 104-133 19-48 (223)
317 PRK13889 conjugal transfer rel 97.3 0.0013 2.8E-08 67.2 9.3 87 109-204 364-459 (988)
318 PRK00131 aroK shikimate kinase 97.3 0.00028 6E-09 56.8 3.7 26 106-131 3-28 (175)
319 PRK03846 adenylylsulfate kinas 97.2 0.0044 9.6E-08 51.7 10.9 29 105-133 22-50 (198)
320 PRK06995 flhF flagellar biosyn 97.2 0.016 3.5E-07 55.0 15.8 119 106-236 255-388 (484)
321 PF13671 AAA_33: AAA domain; P 97.2 0.00029 6.2E-09 55.0 3.4 23 109-131 1-23 (143)
322 PF01443 Viral_helicase1: Vira 97.2 0.00055 1.2E-08 58.0 5.4 87 110-204 1-88 (234)
323 PRK10875 recD exonuclease V su 97.2 0.0043 9.3E-08 60.6 12.1 26 180-205 267-292 (615)
324 PF12780 AAA_8: P-loop contain 97.2 0.0072 1.6E-07 53.1 12.3 109 80-207 10-118 (268)
325 COG0529 CysC Adenylylsulfate k 97.2 0.0015 3.1E-08 53.8 7.2 29 105-133 21-49 (197)
326 COG1373 Predicted ATPase (AAA+ 97.2 0.0018 4E-08 60.0 8.9 81 109-206 39-121 (398)
327 PF13238 AAA_18: AAA domain; P 97.2 0.00038 8.2E-09 53.0 3.5 22 110-131 1-22 (129)
328 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00091 2E-08 52.6 5.6 41 86-132 7-47 (133)
329 PRK05986 cob(I)alamin adenolsy 97.2 0.0084 1.8E-07 50.0 11.6 114 109-232 24-165 (191)
330 PRK06762 hypothetical protein; 97.1 0.00042 9E-09 55.9 3.6 25 107-131 2-26 (166)
331 PLN03210 Resistant to P. syrin 97.1 0.0048 1E-07 64.5 12.0 27 106-132 206-232 (1153)
332 PRK12726 flagellar biosynthesi 97.1 0.0093 2E-07 55.0 12.4 28 106-133 205-232 (407)
333 PF13086 AAA_11: AAA domain; P 97.1 0.00059 1.3E-08 57.1 4.4 23 109-131 19-41 (236)
334 TIGR00455 apsK adenylylsulfate 97.1 0.0091 2E-07 49.0 11.2 28 106-133 17-44 (184)
335 KOG2383|consensus 97.1 0.0016 3.4E-08 59.8 7.0 24 105-128 112-135 (467)
336 PRK06731 flhF flagellar biosyn 97.1 0.0087 1.9E-07 52.7 11.6 117 108-236 76-208 (270)
337 PRK08118 topology modulation p 97.1 0.00048 1E-08 56.1 3.4 22 110-131 4-25 (167)
338 PRK08533 flagellar accessory p 97.1 0.0065 1.4E-07 52.1 10.6 25 109-133 26-50 (230)
339 PRK05541 adenylylsulfate kinas 97.1 0.00064 1.4E-08 55.4 4.1 29 105-133 5-33 (176)
340 TIGR01420 pilT_fam pilus retra 97.1 0.003 6.5E-08 57.4 8.8 24 109-132 124-147 (343)
341 PRK04220 2-phosphoglycerate ki 97.1 0.0013 2.8E-08 58.6 6.2 27 105-131 90-116 (301)
342 PRK08233 hypothetical protein; 97.1 0.00052 1.1E-08 55.8 3.4 26 106-131 2-27 (182)
343 cd03283 ABC_MutS-like MutS-lik 97.0 0.0073 1.6E-07 50.6 10.2 24 108-131 26-49 (199)
344 PRK14723 flhF flagellar biosyn 97.0 0.052 1.1E-06 54.2 17.6 119 106-236 184-317 (767)
345 PF13479 AAA_24: AAA domain 97.0 0.0007 1.5E-08 57.3 4.0 86 106-199 2-89 (213)
346 PF13245 AAA_19: Part of AAA d 97.0 0.00091 2E-08 47.4 3.9 23 109-131 12-35 (76)
347 cd03243 ABC_MutS_homologs The 97.0 0.006 1.3E-07 51.0 9.6 25 108-132 30-54 (202)
348 TIGR00767 rho transcription te 97.0 0.0022 4.8E-08 59.3 7.3 23 110-132 171-193 (415)
349 cd01130 VirB11-like_ATPase Typ 97.0 0.026 5.6E-07 46.6 13.0 23 109-131 27-49 (186)
350 TIGR00554 panK_bact pantothena 97.0 0.0016 3.5E-08 57.8 6.1 40 92-132 48-87 (290)
351 PRK05439 pantothenate kinase; 97.0 0.0021 4.5E-08 57.7 6.8 41 90-131 70-110 (311)
352 PF00437 T2SE: Type II/IV secr 97.0 0.0021 4.6E-08 56.0 6.8 100 88-206 114-222 (270)
353 PRK14721 flhF flagellar biosyn 97.0 0.028 6E-07 52.5 14.4 118 106-236 190-323 (420)
354 COG4178 ABC-type uncharacteriz 97.0 0.0032 6.9E-08 60.9 8.4 37 179-222 534-571 (604)
355 PRK05480 uridine/cytidine kina 96.9 0.00094 2E-08 56.0 3.9 27 105-131 4-30 (209)
356 COG1102 Cmk Cytidylate kinase 96.9 0.00071 1.5E-08 54.8 2.9 23 109-131 2-24 (179)
357 PRK03839 putative kinase; Prov 96.9 0.00081 1.8E-08 55.0 3.4 23 109-131 2-24 (180)
358 COG1419 FlhF Flagellar GTP-bin 96.9 0.02 4.4E-07 52.8 12.6 115 106-233 202-332 (407)
359 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00074 1.6E-08 55.2 2.9 23 109-131 1-23 (183)
360 PRK13894 conjugal transfer ATP 96.9 0.0069 1.5E-07 54.6 9.3 115 109-238 150-268 (319)
361 PRK06547 hypothetical protein; 96.9 0.0011 2.4E-08 54.4 3.8 27 105-131 13-39 (172)
362 PLN02200 adenylate kinase fami 96.9 0.0011 2.3E-08 57.2 3.9 27 104-130 40-66 (234)
363 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0023 5E-08 55.2 6.0 23 110-132 2-24 (249)
364 COG3854 SpoIIIAA ncharacterize 96.9 0.003 6.4E-08 54.3 6.4 91 108-205 138-243 (308)
365 PRK09270 nucleoside triphospha 96.9 0.0027 5.8E-08 54.2 6.3 42 89-133 18-59 (229)
366 COG3267 ExeA Type II secretory 96.9 0.01 2.2E-07 51.5 9.8 90 109-203 53-156 (269)
367 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.012 2.5E-07 49.7 10.1 24 108-131 30-53 (204)
368 cd02019 NK Nucleoside/nucleoti 96.9 0.001 2.2E-08 46.0 3.0 22 110-131 2-23 (69)
369 PRK12608 transcription termina 96.9 0.0069 1.5E-07 55.6 9.2 25 109-133 135-159 (380)
370 KOG0479|consensus 96.8 0.005 1.1E-07 59.0 8.2 130 71-209 294-429 (818)
371 KOG3347|consensus 96.8 0.00093 2E-08 53.5 2.9 22 109-130 9-30 (176)
372 PRK14527 adenylate kinase; Pro 96.8 0.0012 2.5E-08 54.8 3.6 27 105-131 4-30 (191)
373 TIGR03499 FlhF flagellar biosy 96.8 0.0055 1.2E-07 54.2 8.0 50 84-133 167-220 (282)
374 smart00534 MUTSac ATPase domai 96.8 0.014 3E-07 48.1 10.0 22 110-131 2-23 (185)
375 PRK09376 rho transcription ter 96.8 0.0035 7.5E-08 57.9 6.8 24 110-133 172-195 (416)
376 TIGR00235 udk uridine kinase. 96.8 0.0014 3E-08 55.1 3.9 28 104-131 3-30 (207)
377 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.4E-08 54.6 3.2 22 109-130 2-23 (188)
378 TIGR02525 plasmid_TraJ plasmid 96.8 0.014 3.1E-07 53.6 10.6 92 109-206 151-251 (372)
379 PRK00625 shikimate kinase; Pro 96.8 0.0012 2.7E-08 54.2 3.4 23 109-131 2-24 (173)
380 cd00227 CPT Chloramphenicol (C 96.8 0.0014 3E-08 53.5 3.6 23 109-131 4-26 (175)
381 PRK13947 shikimate kinase; Pro 96.7 0.0013 2.8E-08 53.2 3.3 23 109-131 3-25 (171)
382 PF08433 KTI12: Chromatin asso 96.7 0.0042 9.2E-08 54.6 6.7 74 110-190 4-82 (270)
383 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.014 3.1E-07 50.9 9.9 26 108-133 37-62 (259)
384 cd00464 SK Shikimate kinase (S 96.7 0.0013 2.7E-08 52.0 3.0 22 110-131 2-23 (154)
385 TIGR02012 tigrfam_recA protein 96.7 0.0083 1.8E-07 54.1 8.6 25 109-133 57-81 (321)
386 PRK09435 membrane ATPase/prote 96.7 0.018 3.8E-07 52.2 10.6 29 105-133 54-82 (332)
387 PF00270 DEAD: DEAD/DEAH box h 96.7 0.024 5.2E-07 45.1 10.4 22 109-130 16-37 (169)
388 PRK07667 uridine kinase; Provi 96.7 0.0032 6.9E-08 52.4 5.4 28 106-133 16-43 (193)
389 COG5271 MDN1 AAA ATPase contai 96.7 0.0074 1.6E-07 64.1 8.8 104 109-223 890-1007(4600)
390 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.02 4.3E-07 47.8 10.2 21 109-129 30-50 (200)
391 PRK04040 adenylate kinase; Pro 96.7 0.0017 3.6E-08 54.1 3.7 25 107-131 2-26 (188)
392 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.3E-08 53.3 2.4 22 110-131 1-22 (163)
393 PRK12337 2-phosphoglycerate ki 96.7 0.0052 1.1E-07 57.8 7.2 27 105-131 253-279 (475)
394 cd03222 ABC_RNaseL_inhibitor T 96.7 0.01 2.2E-07 48.9 8.3 86 109-204 27-116 (177)
395 PRK14738 gmk guanylate kinase; 96.7 0.0017 3.7E-08 54.7 3.6 27 104-130 10-36 (206)
396 cd02021 GntK Gluconate kinase 96.7 0.0014 3E-08 51.8 2.9 21 110-130 2-22 (150)
397 cd02027 APSK Adenosine 5'-phos 96.7 0.024 5.2E-07 45.1 10.0 25 109-133 1-25 (149)
398 TIGR02237 recomb_radB DNA repa 96.6 0.0096 2.1E-07 49.7 7.9 27 107-133 12-38 (209)
399 PRK07261 topology modulation p 96.6 0.0016 3.5E-08 53.2 3.1 22 110-131 3-24 (171)
400 COG2805 PilT Tfp pilus assembl 96.6 0.012 2.5E-07 52.5 8.6 92 110-206 128-224 (353)
401 PTZ00088 adenylate kinase 1; P 96.6 0.0019 4.1E-08 55.4 3.7 26 106-131 5-30 (229)
402 cd00983 recA RecA is a bacter 96.6 0.012 2.6E-07 53.1 8.9 25 109-133 57-81 (325)
403 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.015 3.3E-07 46.0 8.6 86 109-204 28-115 (144)
404 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0018 4E-08 52.8 3.3 23 109-131 5-27 (188)
405 PF04851 ResIII: Type III rest 96.6 0.0054 1.2E-07 49.3 6.0 44 83-133 8-51 (184)
406 PRK00091 miaA tRNA delta(2)-is 96.6 0.0097 2.1E-07 53.3 8.2 26 106-131 3-28 (307)
407 PLN02674 adenylate kinase 96.6 0.0035 7.7E-08 54.3 5.1 23 108-130 32-54 (244)
408 cd02020 CMPK Cytidine monophos 96.6 0.0018 3.9E-08 50.6 3.0 22 110-131 2-23 (147)
409 PRK00889 adenylylsulfate kinas 96.6 0.0028 6E-08 51.6 4.2 28 106-133 3-30 (175)
410 PF00488 MutS_V: MutS domain V 96.6 0.049 1.1E-06 46.9 12.1 108 108-225 44-166 (235)
411 PRK12338 hypothetical protein; 96.6 0.0021 4.5E-08 57.8 3.6 26 106-131 3-28 (319)
412 TIGR00643 recG ATP-dependent D 96.6 0.048 1E-06 53.6 13.4 21 106-126 255-275 (630)
413 TIGR02858 spore_III_AA stage I 96.6 0.018 3.9E-07 50.7 9.3 24 109-132 113-136 (270)
414 PRK13826 Dtr system oriT relax 96.5 0.0087 1.9E-07 61.8 8.3 85 109-204 399-494 (1102)
415 PRK13833 conjugal transfer pro 96.5 0.0095 2.1E-07 53.8 7.7 110 109-232 146-259 (323)
416 KOG0481|consensus 96.5 0.0027 5.8E-08 60.0 4.2 121 76-206 329-456 (729)
417 PRK14531 adenylate kinase; Pro 96.5 0.0024 5.1E-08 52.6 3.5 23 109-131 4-26 (183)
418 PRK14530 adenylate kinase; Pro 96.5 0.0021 4.5E-08 54.3 3.2 23 109-131 5-27 (215)
419 PF02367 UPF0079: Uncharacteri 96.5 0.0059 1.3E-07 47.4 5.4 23 109-131 17-39 (123)
420 TIGR02322 phosphon_PhnN phosph 96.5 0.0022 4.8E-08 52.3 3.2 24 109-132 3-26 (179)
421 PRK08154 anaerobic benzoate ca 96.5 0.0053 1.1E-07 55.0 5.9 28 104-131 130-157 (309)
422 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.02 4.3E-07 48.5 9.2 26 108-133 17-42 (224)
423 PRK13900 type IV secretion sys 96.5 0.033 7.1E-07 50.5 11.0 108 109-233 162-280 (332)
424 KOG0482|consensus 96.5 0.0035 7.6E-08 59.1 4.8 131 69-207 333-468 (721)
425 cd01428 ADK Adenylate kinase ( 96.5 0.0021 4.6E-08 52.8 3.0 21 110-130 2-22 (194)
426 PHA02530 pseT polynucleotide k 96.5 0.0023 5E-08 56.6 3.4 24 108-131 3-26 (300)
427 PRK13948 shikimate kinase; Pro 96.5 0.0031 6.8E-08 52.2 3.9 26 106-131 9-34 (182)
428 PRK10646 ADP-binding protein; 96.5 0.0066 1.4E-07 48.9 5.6 43 84-132 11-53 (153)
429 cd01121 Sms Sms (bacterial rad 96.5 0.0076 1.6E-07 55.4 6.7 25 109-133 84-108 (372)
430 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.04 8.7E-07 47.1 10.6 22 109-130 33-54 (222)
431 PRK02496 adk adenylate kinase; 96.4 0.0026 5.6E-08 52.2 3.2 23 109-131 3-25 (184)
432 COG0563 Adk Adenylate kinase a 96.4 0.0026 5.6E-08 52.5 3.1 22 109-130 2-23 (178)
433 TIGR01587 cas3_core CRISPR-ass 96.4 0.027 5.9E-07 51.0 10.1 23 110-132 2-24 (358)
434 PF00406 ADK: Adenylate kinase 96.4 0.0027 5.9E-08 50.4 3.1 20 112-131 1-20 (151)
435 COG0541 Ffh Signal recognition 96.4 0.29 6.4E-06 45.6 16.6 113 105-231 98-231 (451)
436 PRK13949 shikimate kinase; Pro 96.4 0.0026 5.6E-08 52.0 3.0 23 109-131 3-25 (169)
437 PRK12339 2-phosphoglycerate ki 96.4 0.003 6.5E-08 53.0 3.5 26 106-131 2-27 (197)
438 PF06745 KaiC: KaiC; InterPro 96.4 0.0055 1.2E-07 52.0 5.1 25 106-130 18-42 (226)
439 PF00485 PRK: Phosphoribulokin 96.4 0.0033 7.1E-08 52.2 3.7 25 109-133 1-25 (194)
440 cd03228 ABCC_MRP_Like The MRP 96.4 0.027 5.9E-07 45.6 9.1 23 109-131 30-52 (171)
441 PRK06217 hypothetical protein; 96.4 0.0026 5.6E-08 52.4 3.0 23 109-131 3-25 (183)
442 PRK05537 bifunctional sulfate 96.4 0.011 2.5E-07 57.2 7.8 62 65-132 351-417 (568)
443 KOG2543|consensus 96.4 0.042 9E-07 50.4 10.8 58 78-148 6-63 (438)
444 cd01129 PulE-GspE PulE/GspE Th 96.4 0.059 1.3E-06 47.2 11.6 24 109-132 82-105 (264)
445 COG1072 CoaA Panthothenate kin 96.4 0.01 2.2E-07 52.0 6.6 53 80-133 56-108 (283)
446 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.045 9.9E-07 46.9 10.6 23 108-130 22-44 (237)
447 PRK13764 ATPase; Provisional 96.4 0.0073 1.6E-07 58.7 6.1 25 109-133 259-283 (602)
448 COG1061 SSL2 DNA or RNA helica 96.3 0.016 3.4E-07 54.6 8.2 31 175-205 143-173 (442)
449 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.017 3.6E-07 46.1 7.3 87 109-204 27-125 (157)
450 TIGR02788 VirB11 P-type DNA tr 96.3 0.033 7.2E-07 49.8 9.9 23 109-131 146-168 (308)
451 PRK11823 DNA repair protein Ra 96.3 0.0072 1.6E-07 56.9 5.8 24 109-132 82-105 (446)
452 PRK13946 shikimate kinase; Pro 96.3 0.0036 7.8E-08 51.6 3.4 26 106-131 9-34 (184)
453 PLN02840 tRNA dimethylallyltra 96.3 0.018 4E-07 53.6 8.3 27 106-132 20-46 (421)
454 COG0802 Predicted ATPase or ki 96.3 0.011 2.4E-07 47.2 5.9 43 84-132 8-50 (149)
455 PRK05057 aroK shikimate kinase 96.3 0.0039 8.5E-08 51.0 3.4 23 109-131 6-28 (172)
456 PRK14528 adenylate kinase; Pro 96.3 0.0035 7.7E-08 51.9 3.2 23 109-131 3-25 (186)
457 cd03216 ABC_Carb_Monos_I This 96.3 0.037 8E-07 44.6 9.1 89 109-204 28-127 (163)
458 PRK13975 thymidylate kinase; P 96.3 0.0042 9E-08 51.3 3.6 25 108-132 3-27 (196)
459 PRK14737 gmk guanylate kinase; 96.3 0.0039 8.5E-08 51.8 3.4 25 106-130 3-27 (186)
460 COG1643 HrpA HrpA-like helicas 96.3 0.021 4.5E-07 57.6 9.0 52 177-234 161-215 (845)
461 TIGR01967 DEAH_box_HrpA ATP-de 96.3 0.024 5.2E-07 59.5 9.7 17 109-125 84-100 (1283)
462 PRK09361 radB DNA repair and r 96.3 0.019 4.2E-07 48.5 7.7 28 106-133 22-49 (225)
463 PTZ00424 helicase 45; Provisio 96.3 0.087 1.9E-06 48.3 12.5 22 109-130 67-88 (401)
464 PRK05800 cobU adenosylcobinami 96.2 0.031 6.6E-07 45.7 8.5 22 109-130 3-24 (170)
465 cd03227 ABC_Class2 ABC-type Cl 96.2 0.052 1.1E-06 43.7 9.8 28 106-133 20-47 (162)
466 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.049 1.1E-06 46.2 10.0 23 108-130 31-53 (216)
467 COG1936 Predicted nucleotide k 96.2 0.0035 7.5E-08 51.3 2.8 29 212-240 129-157 (180)
468 PRK04841 transcriptional regul 96.2 0.06 1.3E-06 54.5 12.3 40 178-224 121-161 (903)
469 PRK00300 gmk guanylate kinase; 96.2 0.0042 9.1E-08 51.7 3.4 25 107-131 5-29 (205)
470 PRK04182 cytidylate kinase; Pr 96.2 0.004 8.7E-08 50.4 3.2 23 109-131 2-24 (180)
471 PF05707 Zot: Zonular occluden 96.2 0.004 8.7E-08 51.8 3.2 19 109-127 2-20 (193)
472 PRK00279 adk adenylate kinase; 96.2 0.0039 8.4E-08 52.6 3.1 22 110-131 3-24 (215)
473 TIGR00376 DNA helicase, putati 96.2 0.021 4.5E-07 56.2 8.6 25 109-133 175-199 (637)
474 COG0703 AroK Shikimate kinase 96.2 0.0042 9.2E-08 50.9 3.2 25 109-133 4-28 (172)
475 PRK04328 hypothetical protein; 96.2 0.025 5.3E-07 49.1 8.1 22 109-130 25-46 (249)
476 PF13521 AAA_28: AAA domain; P 96.2 0.0044 9.5E-08 49.8 3.2 21 110-130 2-22 (163)
477 PRK10078 ribose 1,5-bisphospho 96.2 0.0037 8.1E-08 51.5 2.8 23 109-131 4-26 (186)
478 TIGR00041 DTMP_kinase thymidyl 96.2 0.0053 1.2E-07 50.6 3.7 26 108-133 4-29 (195)
479 cd02023 UMPK Uridine monophosp 96.2 0.004 8.7E-08 51.7 3.0 22 110-131 2-23 (198)
480 cd03214 ABC_Iron-Siderophores_ 96.2 0.027 5.9E-07 46.1 7.9 23 109-131 27-49 (180)
481 cd03213 ABCG_EPDR ABCG transpo 96.2 0.085 1.8E-06 43.7 11.0 23 109-131 37-59 (194)
482 KOG1051|consensus 96.2 0.016 3.4E-07 58.5 7.6 117 78-206 186-316 (898)
483 KOG2680|consensus 96.2 0.01 2.2E-07 52.9 5.5 68 78-157 40-110 (454)
484 PLN02459 probable adenylate ki 96.2 0.0052 1.1E-07 53.7 3.7 26 106-131 28-53 (261)
485 PHA01747 putative ATP-dependen 96.2 0.015 3.3E-07 53.1 6.7 100 104-225 187-301 (425)
486 TIGR01351 adk adenylate kinase 96.1 0.0043 9.2E-08 52.2 3.0 21 110-130 2-22 (210)
487 cd02028 UMPK_like Uridine mono 96.1 0.0053 1.1E-07 50.6 3.4 24 110-133 2-25 (179)
488 TIGR02173 cyt_kin_arch cytidyl 96.1 0.005 1.1E-07 49.4 3.2 23 109-131 2-24 (171)
489 PHA02624 large T antigen; Prov 96.1 0.0099 2.1E-07 57.6 5.6 28 106-133 430-457 (647)
490 TIGR00750 lao LAO/AO transport 96.1 0.033 7.2E-07 49.6 8.7 28 106-133 33-60 (300)
491 cd03285 ABC_MSH2_euk MutS2 hom 96.1 0.071 1.5E-06 45.5 10.4 26 107-132 30-55 (222)
492 TIGR03819 heli_sec_ATPase heli 96.1 0.1 2.2E-06 47.5 11.9 108 109-233 180-298 (340)
493 PRK15453 phosphoribulokinase; 96.1 0.0086 1.9E-07 53.0 4.6 27 106-132 4-30 (290)
494 PRK00698 tmk thymidylate kinas 96.0 0.0072 1.6E-07 50.1 3.7 27 107-133 3-29 (205)
495 PRK03731 aroL shikimate kinase 96.0 0.0061 1.3E-07 49.3 3.2 23 109-131 4-26 (171)
496 cd01672 TMPK Thymidine monopho 96.0 0.0068 1.5E-07 49.6 3.4 25 109-133 2-26 (200)
497 PRK14526 adenylate kinase; Pro 96.0 0.0065 1.4E-07 51.5 3.3 22 109-130 2-23 (211)
498 PF03308 ArgK: ArgK protein; 96.0 0.082 1.8E-06 46.2 10.1 28 106-133 28-55 (266)
499 TIGR00017 cmk cytidylate kinas 95.9 0.0073 1.6E-07 51.4 3.5 24 108-131 3-26 (217)
500 KOG0922|consensus 95.9 0.059 1.3E-06 52.4 9.9 42 86-133 51-93 (674)
No 1
>KOG2170|consensus
Probab=100.00 E-value=3.2e-46 Score=322.29 Aligned_cols=194 Identities=39% Similarity=0.682 Sum_probs=188.5
Q ss_pred cceeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHH
Q psy1694 47 SKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~ 126 (247)
..+||.|. +||.+.. +..|..+|++.|++.++||+.+++.++++++.++.++. |+||+++.|||+|||||+++++.
T Consensus 54 ~~~yC~f~--~cc~d~~-~~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPLvLSfHG~tGTGKN~Va~i 129 (344)
T KOG2170|consen 54 RAQYCLFA--ECCIDND-IRNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPLVLSFHGWTGTGKNYVAEI 129 (344)
T ss_pred chhhhhHH--HHccccc-ccccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCCCchhHHHHH
Confidence 67789999 9999665 88889999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 127 IVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 127 la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
||+++|. .|.+|+||+.+.++++||++++++.|+.++.+++.+.++.|+++++||||+||||+++++.|.++||..+
T Consensus 130 iA~n~~~---~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp 206 (344)
T KOG2170|consen 130 IAENLYR---GGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP 206 (344)
T ss_pred HHHHHHh---ccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccCC
Q psy1694 207 VYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247 (247)
Q Consensus 207 ~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~~ 247 (247)
.++++|++|+||||.||.|+++|++.+++.+++|+.|||++
T Consensus 207 ~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~ 247 (344)
T KOG2170|consen 207 QVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLR 247 (344)
T ss_pred ccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccch
Confidence 99999999999999999999999999999999999999985
No 2
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=99.97 E-value=1.2e-30 Score=201.31 Aligned_cols=127 Identities=39% Similarity=0.738 Sum_probs=123.0
Q ss_pred eeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 51 NGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
|.+. +||++++ ++.+.++|++.|+++|+||+.|.+.+.+++++++.++. |+|||++.||||||||||++++.||++
T Consensus 1 C~~~--eCC~~~~-i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 1 CRFY--ECCDDRW-IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCcc--ccCCCcc-CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 7888 9999998 89999999999999999999999999999999998886 999999999999999999999999999
Q ss_pred hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694 131 IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 131 l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil 184 (247)
+|. +|+.|+||+.+.+..+||++..+..|++++.+++.+.++.|+++++||
T Consensus 77 ly~---~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 77 LYK---SGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred HHh---cccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 999 999999999999999999999999999999999999999999999986
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.95 E-value=6e-30 Score=236.02 Aligned_cols=190 Identities=14% Similarity=0.167 Sum_probs=152.7
Q ss_pred hHHHHHhhhhccCccccc------cceeeeeccCCCCCccccccccHH-HHHH--HHHhhcCChHHHHHHHHHHHHHhhh
Q psy1694 29 SGIAIAAGIAYFSPSIIN------SKFLNGFGGGEACTDKFIQSSNVR-VLEE--QLKQHVHGQELAISHICGALKNHFQ 99 (247)
Q Consensus 29 ~~~~~av~a~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~L~~--~L~~~l~Gq~~a~~~l~~~l~~~~~ 99 (247)
+.+++||+|++.|||||+ +++.-.+. ++++.+. ...+.+ .... .....++|++++++.+.+.+.+.+.
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~--ral~~~~-~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~ 162 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE--RALELRE-LQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAP 162 (464)
T ss_pred CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHH--HHHHHhh-hhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHhC
Confidence 689999999999999999 66666676 7776553 322232 1111 2445799999999999999999988
Q ss_pred cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------ccccCCCCChHHHHHHHHHHHH
Q psy1694 100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------SRIHFPNENHVSLYRLQLTNWI 170 (247)
Q Consensus 100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~~l~~~~~~~v~~~~~~l~~~~ 170 (247)
++. .++++|++||||..+||+|++ ++ .+...|||.+|| +++|+++++. |++....+.
T Consensus 163 s~a------~VLI~GESGtGKElvAr~IH~--~S---~R~~~PFVavNcaAip~~l~ESELFGhekGA---FTGA~~~r~ 228 (464)
T COG2204 163 SDA------SVLITGESGTGKELVARAIHQ--AS---PRAKGPFIAVNCAAIPENLLESELFGHEKGA---FTGAITRRI 228 (464)
T ss_pred CCC------CEEEECCCCCcHHHHHHHHHh--hC---cccCCCceeeecccCCHHHHHHHhhcccccC---cCCcccccC
Confidence 777 799999999999999999955 47 777899999999 5678888876 444434444
Q ss_pred HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-------cccCCceEEEEEeCCChHHHHHHHHHHHHcCccc
Q psy1694 171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-------QISFQNTIFLFLSNSGGTEIMNTFLELRKSGERY 243 (247)
Q Consensus 171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-------~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~R 243 (247)
+.++.+.+|++|||||+.||.++|.+|+++|+++.+.. .+|.| +|.+| ++++.+..++|+||
T Consensus 229 -G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR---iIaaT-------~~dL~~~v~~G~FR 297 (464)
T COG2204 229 -GRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR---IIAAT-------NRDLEEEVAAGRFR 297 (464)
T ss_pred -cceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE---EEeec-------CcCHHHHHHcCCcH
Confidence 78899999999999999999999999999999987542 24555 66666 67899999999999
Q ss_pred ccC
Q psy1694 244 ITI 246 (247)
Q Consensus 244 e~~ 246 (247)
|||
T Consensus 298 eDL 300 (464)
T COG2204 298 EDL 300 (464)
T ss_pred HHH
Confidence 997
No 4
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-28 Score=234.06 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=141.0
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
..+..|++.|.++|+||+.|++.+.+++++...+=.+|++|. +++|.||||+|||.+|+.||+.||+ . ..++++
T Consensus 480 ~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg---~--e~aliR 554 (786)
T COG0542 480 EKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG---D--EQALIR 554 (786)
T ss_pred HHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC---C--Ccccee
Confidence 345678999999999999999999999998655444588998 4889999999999999999999987 2 357888
Q ss_pred eecc---------cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694 146 KFNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS 212 (247)
Q Consensus 146 ~~~~---------~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~ 212 (247)
++|| .+.+++|+||+ |.+ .+.+++.+++.|++||+||||||.+|++++.|+++||+|+.+|+ ||
T Consensus 555 ~DMSEy~EkHsVSrLIGaPPGYVG-yee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 555 IDMSEYMEKHSVSRLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred echHHHHHHHHHHHHhCCCCCCce-ecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 8875 45789999999 776 78999999999999999999999999999999999999999987 69
Q ss_pred CCceEEEEEeCCChHHHHHHH
Q psy1694 213 FQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 213 ~~~~ifI~tSN~g~~~i~~~~ 233 (247)
|+|+|+|+|||.|++.|.+..
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~ 652 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDA 652 (786)
T ss_pred cceeEEEEecccchHHHHhhc
Confidence 999999999999999988764
No 5
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=4e-24 Score=195.97 Aligned_cols=143 Identities=14% Similarity=0.239 Sum_probs=122.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------c
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------S 149 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~ 149 (247)
.++|+++|+..+.+.+.-.+.++. .+|+.|++||||+.+|++|++ ++ .+...|||.+|| |
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~--~S---~R~~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQ--LS---PRRDKPFVKLNCAALPESLLES 292 (550)
T ss_pred cceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHh--hC---cccCCCceeeeccccchHHHHH
Confidence 589999999999999999887776 899999999999999999955 47 777899999999 6
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-------ccccCCceEEEEEe
Q psy1694 150 RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-------NQISFQNTIFLFLS 222 (247)
Q Consensus 150 ~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-------~~~~~~~~ifI~tS 222 (247)
++|++.++. |+++...+. +.++-+++|++|||||+.||..+|.||+++|+++++. ..||.| |+-.|
T Consensus 293 ELFGHeKGA---FTGA~~~r~-GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVR--iIAAT- 365 (550)
T COG3604 293 ELFGHEKGA---FTGAINTRR-GRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVR--VIAAT- 365 (550)
T ss_pred HHhcccccc---cccchhccC-cceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEE--EEecc-
Confidence 778888776 444444444 7788889999999999999999999999999999864 236777 55555
Q ss_pred CCChHHHHHHHHHHHHcCcccccC
Q psy1694 223 NSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 223 N~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
|+++.+++++|+||+||
T Consensus 366 -------NRDL~~~V~~G~FRaDL 382 (550)
T COG3604 366 -------NRDLEEMVRDGEFRADL 382 (550)
T ss_pred -------chhHHHHHHcCcchhhh
Confidence 78999999999999997
No 6
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.89 E-value=6.4e-23 Score=204.00 Aligned_cols=159 Identities=22% Similarity=0.301 Sum_probs=131.8
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
.....|++.|+++|+||+.|++.+.+++.....+-.+|++|+. ++|+||||||||++|+++|+.++. . ..+++.
T Consensus 555 ~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~--~~~~~~ 629 (852)
T TIGR03345 555 EAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---G--EQNLIT 629 (852)
T ss_pred HHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---C--CcceEE
Confidence 3456789999999999999999999999875433333779985 899999999999999999999986 3 246788
Q ss_pred eeccc---------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694 146 KFNSR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS 212 (247)
Q Consensus 146 ~~~~~---------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~ 212 (247)
+++++ +.++++++++ |.+ .+.+.+.+++++++||+|||+|++++.+++.|+++++++.++++ +|
T Consensus 630 ~dmse~~~~~~~~~l~g~~~gyvg-~~~--~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 630 INMSEFQEAHTVSRLKGSPPGYVG-YGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred EeHHHhhhhhhhccccCCCCCccc-ccc--cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEe
Confidence 88754 3456677776 432 35667788899999999999999999999999999999988764 69
Q ss_pred CCceEEEEEeCCChHHHHHHH
Q psy1694 213 FQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 213 ~~~~ifI~tSN~g~~~i~~~~ 233 (247)
++|++||+|||.|.+.+.+..
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred ccccEEEEeCCCchHHHHHhc
Confidence 999999999999999887643
No 7
>KOG1051|consensus
Probab=99.89 E-value=1.2e-22 Score=198.94 Aligned_cols=158 Identities=21% Similarity=0.343 Sum_probs=136.4
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 147 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~ 147 (247)
++..|++.|.++|+||+.|+..+.+++.+...+-.++..+.+++|.||+|+|||.+|+++|+.+|+ ....|++++
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-----se~~~IriD 626 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-----SEENFIRLD 626 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-----CccceEEec
Confidence 456789999999999999999999999876544332423456999999999999999999999987 246799999
Q ss_pred ccc------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceE
Q psy1694 148 NSR------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTI 217 (247)
Q Consensus 148 ~~~------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~i 217 (247)
+++ +.+.++++++ |+. .+.+.+.++++|++||+|||||+.++.+++.|++++|+|+++|+ +|++|+|
T Consensus 627 mse~~evskligsp~gyvG-~e~--gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 627 MSEFQEVSKLIGSPPGYVG-KEE--GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred hhhhhhhhhccCCCccccc-chh--HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 874 5677888877 554 57899999999999999999999999999999999999999987 6999999
Q ss_pred EEEEeCCChHHHHHHH
Q psy1694 218 FLFLSNSGGTEIMNTF 233 (247)
Q Consensus 218 fI~tSN~g~~~i~~~~ 233 (247)
||+|||.|.+.|....
T Consensus 704 ~IMTsn~~~~~i~~~~ 719 (898)
T KOG1051|consen 704 FIMTSNVGSSAIANDA 719 (898)
T ss_pred EEEecccchHhhhccc
Confidence 9999999999877664
No 8
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.89 E-value=9.1e-23 Score=202.96 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=127.7
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
....|++.|.++|+||+.|++.+.+++.....+-.++++|.. ++|+||||||||++|+.+|+.+|+ . ..+++++
T Consensus 499 ~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~--~~~~~~~ 573 (821)
T CHL00095 499 KLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---S--EDAMIRL 573 (821)
T ss_pred HHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---C--ccceEEE
Confidence 356789999999999999999999999865333223778875 889999999999999999999987 3 2468888
Q ss_pred ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+++++ .++++++++ |.+ .+.+.+.+..+|++||+|||+|++++++++.|+++||+++++++ +|+
T Consensus 574 d~s~~~~~~~~~~l~g~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 574 DMSEYMEKHTVSKLIGSPPGYVG-YNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred EchhccccccHHHhcCCCCcccC-cCc--cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEec
Confidence 87654 234456655 433 34567788899999999999999999999999999999988764 699
Q ss_pred CceEEEEEeCCChHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~ 230 (247)
+|++||+|||.|++.|.
T Consensus 651 ~~~i~I~Tsn~g~~~i~ 667 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIE 667 (821)
T ss_pred CceEEEEeCCcchHHHH
Confidence 99999999999998776
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.89 E-value=6.2e-23 Score=201.12 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=124.6
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
....|++.|+++|+||+.|++.+.+++.....+-.++++|. +++|+||||||||++|+.+|+.+. .+++.+
T Consensus 448 ~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--------~~~i~i 519 (758)
T PRK11034 448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRF 519 (758)
T ss_pred HHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--------CCcEEe
Confidence 45678899999999999999999999987644433366886 589999999999999999999863 378888
Q ss_pred ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+|+++ .+.++++++ |.. .+.+.+.+.+++++||+|||+|++++++++.|+++||++.+++. +|+
T Consensus 520 d~se~~~~~~~~~LiG~~~gyvg-~~~--~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~ 596 (758)
T PRK11034 520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred echhhcccccHHHHcCCCCCccc-ccc--cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecC
Confidence 77553 455556655 322 34566777888999999999999999999999999999987654 699
Q ss_pred CceEEEEEeCCChHHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~~ 231 (247)
+|++||+|||.|.+.+.+
T Consensus 597 rn~iiI~TsN~g~~~~~~ 614 (758)
T PRK11034 597 RNVVLVMTTNAGVRETER 614 (758)
T ss_pred CCcEEEEeCCcCHHHHhh
Confidence 999999999999877654
No 10
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.88 E-value=2.4e-22 Score=200.56 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=128.0
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
.+..|++.|.+.++||+.|++.+.+++.+...+-.+|++|. +++|.||||||||++|+.||+.++. . ..+++.+
T Consensus 555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~--~~~~i~~ 629 (852)
T TIGR03346 555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---D--EDAMVRI 629 (852)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---C--CCcEEEE
Confidence 45678889999999999999999999987654333366885 5889999999999999999999876 3 3578888
Q ss_pred ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+|+++ .++++++++ |.+ .+.+.+.+...+++||+|||||++++++++.|+++|+++.++++ +|+
T Consensus 630 d~s~~~~~~~~~~l~g~~~g~~g-~~~--~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 630 DMSEYMEKHSVARLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred echhhcccchHHHhcCCCCCccC-ccc--ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEec
Confidence 87654 344556555 433 35666778889999999999999999999999999999988775 699
Q ss_pred CceEEEEEeCCChHHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~~ 231 (247)
+|+|||+|||.|.+.+.+
T Consensus 707 rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred CCcEEEEeCCcchHhHhh
Confidence 999999999999887665
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.88 E-value=2.4e-22 Score=197.78 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=124.8
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
.+..+++.|+++++||+.+++.+.+++......-.++++|. +++|+||||||||++|+.+|+.+.. +++.+
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~--------~~~~~ 515 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV--------HLERF 515 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC--------CeEEE
Confidence 45578899999999999999999999986433322367887 4899999999999999999998643 67777
Q ss_pred ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+++++ .++++++++ |.. .+.+.+.++..+++||+|||+|++++++++.|+++||++.++++ +|+
T Consensus 516 d~se~~~~~~~~~lig~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 516 DMSEYMEKHTVSRLIGAPPGYVG-FEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred eCchhhhcccHHHHhcCCCCCcc-cch--hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 77654 344556655 332 35566778889999999999999999999999999999988764 699
Q ss_pred CceEEEEEeCCChHHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~~ 231 (247)
+|++||+|||.|.+.+.+
T Consensus 593 ~~~iii~Tsn~g~~~~~~ 610 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSK 610 (731)
T ss_pred CCCEEEECCCcchhhhhh
Confidence 999999999999887754
No 12
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.87 E-value=1.6e-21 Score=194.47 Aligned_cols=156 Identities=19% Similarity=0.328 Sum_probs=126.1
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
.+..|++.|.++++||+.+++.+.+++.....+-.+|++|. +++|+||||||||++|++||+.++. . ..+++.+
T Consensus 558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~--~~~~i~i 632 (857)
T PRK10865 558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---S--DDAMVRI 632 (857)
T ss_pred HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---C--CCcEEEE
Confidence 45678999999999999999999999987643333366886 5899999999999999999999875 3 2478888
Q ss_pred ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+|+++ .+.++++++ |.. .+.+.+.+...+++||+|||++++++.+++.|+++|+++.++++ +|+
T Consensus 633 d~se~~~~~~~~~LiG~~pgy~g-~~~--~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 633 DMSEFMEKHSVSRLVGAPPGYVG-YEE--GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred EhHHhhhhhhHHHHhCCCCcccc-cch--hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEee
Confidence 87554 344455544 322 34566777888999999999999999999999999999988764 699
Q ss_pred CceEEEEEeCCChHHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~~ 231 (247)
+|++||+|||.|++.+.+
T Consensus 710 rn~iiI~TSN~g~~~~~~ 727 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQE 727 (857)
T ss_pred cccEEEEeCCcchHHHHH
Confidence 999999999999877653
No 13
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-22 Score=187.39 Aligned_cols=144 Identities=11% Similarity=0.165 Sum_probs=119.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------c
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------S 149 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~ 149 (247)
.++|.++++..+.+.+++.+.++. .+|+.|++||||+..|++|++ .+ ++...|||.+|| |
T Consensus 246 ~Iig~S~~m~~~~~~akr~A~tds------tVLi~GESGTGKElfA~~IH~--~S---~R~~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 246 DIIGESPAMLRVLELAKRIAKTDS------TVLILGESGTGKELFARAIHN--LS---PRANGPFIAINCAAIPETLLES 314 (560)
T ss_pred hhccCCHHHHHHHHHHHhhcCCCC------cEEEecCCCccHHHHHHHHHh--cC---cccCCCeEEEecccCCHHHHHH
Confidence 599999999999999999887776 899999999999999999944 47 778899999999 5
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-------cccCCceEEEEEe
Q psy1694 150 RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-------QISFQNTIFLFLS 222 (247)
Q Consensus 150 ~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-------~~~~~~~ifI~tS 222 (247)
++|+-.+++ |+++..+--.+.++.+.+|++|||||..||..+|.+||++|+++++.. .+|+| +|.+|
T Consensus 315 ELFGye~GA---FTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIAAT 388 (560)
T COG3829 315 ELFGYEKGA---FTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIAAT 388 (560)
T ss_pred HHhCcCCcc---ccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE---EEecc
Confidence 667766665 444333323467788899999999999999999999999999987542 25766 55554
Q ss_pred CCChHHHHHHHHHHHHcCcccccC
Q psy1694 223 NSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 223 N~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
|+.+.+++++|+|||||
T Consensus 389 -------N~nL~~~i~~G~FReDL 405 (560)
T COG3829 389 -------NRNLEKMIAEGTFREDL 405 (560)
T ss_pred -------CcCHHHHHhcCcchhhh
Confidence 67899999999999997
No 14
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.84 E-value=1.9e-20 Score=153.34 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=103.7
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--------
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-------- 151 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-------- 151 (247)
++|.+.+++.+.+.+++.+..+. .++++|++||||+.+|++|++ .+ .+...||+.++|+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~------pVlI~GE~GtGK~~lA~~IH~--~s---~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDL------PVLITGETGTGKELLARAIHN--NS---PRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-------EEEECSTTSSHHHHHHHHHH--CS---TTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCC------CEEEEcCCCCcHHHHHHHHHH--hh---hcccCCeEEEehhhhhcchhhhh
Confidence 58999999999999998876655 789999999999999999955 45 566789999999765
Q ss_pred -cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCCh
Q psy1694 152 -HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGG 226 (247)
Q Consensus 152 -~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~ 226 (247)
++...+.+. +. ...-.+.+..+.++++|||||+.||+.+|.+|+++|+++.+..- .-..++-+|++||
T Consensus 70 LFG~~~~~~~---~~-~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~--- 142 (168)
T PF00158_consen 70 LFGHEKGAFT---GA-RSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS--- 142 (168)
T ss_dssp HHEBCSSSST---TT-SSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES---
T ss_pred hhcccccccc---cc-ccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC---
Confidence 222211100 00 00012678899999999999999999999999999999875421 1123666888885
Q ss_pred HHHHHHHHHHHHcCcccccC
Q psy1694 227 TEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 227 ~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.+.+++++|+||+||
T Consensus 143 ----~~l~~~v~~g~fr~dL 158 (168)
T PF00158_consen 143 ----KDLEELVEQGRFREDL 158 (168)
T ss_dssp ----S-HHHHHHTTSS-HHH
T ss_pred ----cCHHHHHHcCCChHHH
Confidence 5778899999999986
No 15
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.79 E-value=8.2e-20 Score=149.96 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=87.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCC--CChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNVTACDRAIFIFD 185 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~~~~vlilD 185 (247)
+++|.||+|||||.+|+++|+.++ + ...+++.++++++.... ...+.. +.....+.+...+++||+||
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~-----~~~~~~~~d~s~~~~~~~~~~~~~~----l~~~~~~~v~~~~~gVVllD 75 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVG-----SERPLIRIDMSEYSEGDDVESSVSK----LLGSPPGYVGAEEGGVVLLD 75 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-S-----SCCEEEEEEGGGHCSHHHCSCHCHH----HHHHTTCHHHHHHHTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccC-----CccchHHHhhhcccccchHHhhhhh----hhhcccceeeccchhhhhhH
Confidence 589999999999999999999987 4 24689999998874410 111111 11111122233334699999
Q ss_pred CCCCCCh-----------hhHHHHHhhcccCccccc----ccCCceEEEEEeCCChHHHHHH
Q psy1694 186 EVDKFPK-----------GLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 186 Eiek~~~-----------~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
||||+++ ++|+.|+++||++.+.++ +|++|++||+|||.++..++..
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~ 137 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDA 137 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHC
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhh
Confidence 9999999 999999999999987643 6999999999999999988873
No 16
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.75 E-value=4.9e-19 Score=168.00 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=129.5
Q ss_pred hHHHHHhhhhccCccccc-cceeeeeccCCCCCccccccccHHH---HHHHH-----HhhcCChHHHHHHHHHHHHHhhh
Q psy1694 29 SGIAIAAGIAYFSPSIIN-SKFLNGFGGGEACTDKFIQSSNVRV---LEEQL-----KQHVHGQELAISHICGALKNHFQ 99 (247)
Q Consensus 29 ~~~~~av~a~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~L-----~~~l~Gq~~a~~~l~~~l~~~~~ 99 (247)
.....|+++...|+++|- +.+...+. ++.+... ...+.+. .++.+ -..++|++++++.+.+.+..+..
T Consensus 164 ~~~~~A~~~g~~g~~~~s~e~i~~a~~--~A~~~~~-~~~~~~~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~ 240 (538)
T PRK15424 164 LITDLAEEAGMTGIFIYSAATVRQAFE--DALDMTR-MTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYAR 240 (538)
T ss_pred hHHHHHHHhCCceEEecCHHHHHHHHH--HHHHHHH-HHhhhhhccchhhhhccccchhheeeCCHHHHHHHHHHHHHhC
Confidence 346789999999998886 44444444 4432111 1000000 01111 12399999999999999998877
Q ss_pred cccCCCCCeEEEEeecCCChHHHHHHHHHHHhh------ccccCCCCCcceeeecccc---------cCCCCChHHHHHH
Q psy1694 100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF------KRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRL 164 (247)
Q Consensus 100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~------~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~ 164 (247)
.+. .+++.|++||||+++|++|++.+. + .+...||+.+||+.+ ++...+. |.+
T Consensus 241 s~~------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S---~r~~~pfv~inCaal~e~lleseLFG~~~ga---ftg 308 (538)
T PRK15424 241 SSA------AVLIQGETGTGKELAAQAIHREYFARHDARQ---GKKSHPFVAVNCGAIAESLLEAELFGYEEGA---FTG 308 (538)
T ss_pred CCC------cEEEECCCCCCHHHHHHHHHHhhcccccccC---ccCCCCeEEeecccCChhhHHHHhcCCcccc---ccC
Confidence 665 789999999999999999966532 4 445679999999765 2222211 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc--cCCceEEEEEeCCChHHHHHHHHHHHHcC
Q psy1694 165 QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI--SFQNTIFLFLSNSGGTEIMNTFLELRKSG 240 (247)
Q Consensus 165 ~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~--~~~~~ifI~tSN~g~~~i~~~~~~~~~~g 240 (247)
.....-.+.++.+.++++|||||+.||+.+|.+|+++|+++.+.. +. ---++-+|++|| +.+.+..++|
T Consensus 309 a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~-------~~L~~~v~~g 381 (538)
T PRK15424 309 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH-------CDLEEDVRQG 381 (538)
T ss_pred ccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecC-------CCHHHHHhcc
Confidence 100111245677889999999999999999999999999976532 10 001234777764 4555778889
Q ss_pred cccccC
Q psy1694 241 ERYITI 246 (247)
Q Consensus 241 ~~Re~~ 246 (247)
+||+||
T Consensus 382 ~Fr~dL 387 (538)
T PRK15424 382 RFRRDL 387 (538)
T ss_pred cchHHH
Confidence 999875
No 17
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.72 E-value=8.3e-17 Score=148.20 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc----cCCC------CCeEEEEeecCCChHHHHHHHHHHHhhcccc
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----YHNT------KALAISLHGLPGTGKNYVTDFIVSSIFKRYK 136 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~----~~~~------kpl~lll~G~~GtGKt~~A~~la~~l~~~~~ 136 (247)
+..+.+++.|++.++||+.|++.+..++.++...- ..+. .+.+++|.||||||||++|+.+|+.+.
T Consensus 66 ~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~---- 141 (413)
T TIGR00382 66 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN---- 141 (413)
T ss_pred CCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----
Confidence 34678999999999999999999998886532211 1011 124699999999999999999987742
Q ss_pred CCCCCcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh--------------hhHHHH
Q psy1694 137 DKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPK--------------GLLDVI 198 (247)
Q Consensus 137 ~g~~~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~~~~~vlilDEiek~~~--------------~~~~~L 198 (247)
.||+.++++.+ ..+++++.- ...+...+. ..+..+..++|+|||+|++++ ++|+.|
T Consensus 142 ----~pf~~~da~~L--~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~L 215 (413)
T TIGR00382 142 ----VPFAIADATTL--TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQAL 215 (413)
T ss_pred ----CCeEEechhhc--cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHH
Confidence 37877777665 233444321 111111111 223455668999999999987 699999
Q ss_pred HhhcccCcccc-------cccCCceEEEEEeCC
Q psy1694 199 IPFIDHHAVYN-------QISFQNTIFLFLSNS 224 (247)
Q Consensus 199 l~~Le~~~~~~-------~~~~~~~ifI~tSN~ 224 (247)
|++|| +..++ .++++++++|+|||.
T Consensus 216 L~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 216 LKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence 99996 55542 358899999999999
No 18
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.71 E-value=2e-17 Score=149.02 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=106.2
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------- 152 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------- 152 (247)
++|++++++.+.+.+.+.+..+. .++|.|++||||+++|++|+. .+ .+...||+.++|+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~------pVLI~GE~GtGK~~lAr~iH~--~s---~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDR------PVLIIGERGTGKELIAARLHY--LS---KRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCC------CEEEECCCCChHHHHHHHHHH--hc---CccCCCeEEEeCCCCChHHHHHH
Confidence 58999999999999998876554 689999999999999999954 45 5566899999997642
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCCh
Q psy1694 153 --FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSGG 226 (247)
Q Consensus 153 --~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g~ 226 (247)
+...+. |.+... .-.+.+..+.++++|||||+.||+.+|.+|+++|+++.+.. + .-..++.+|++|
T Consensus 70 lfG~~~g~---~~ga~~-~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at---- 141 (329)
T TIGR02974 70 LFGHEAGA---FTGAQK-RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT---- 141 (329)
T ss_pred Hhcccccc---ccCccc-ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec----
Confidence 111111 111000 11244677888999999999999999999999999876432 1 111345678887
Q ss_pred HHHHHHHHHHHHcCcccccC
Q psy1694 227 TEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 227 ~~i~~~~~~~~~~g~~Re~~ 246 (247)
+..+.++.++|.+|+||
T Consensus 142 ---~~~l~~~~~~g~fr~dL 158 (329)
T TIGR02974 142 ---NADLPALAAEGRFRADL 158 (329)
T ss_pred ---hhhHHHHhhcCchHHHH
Confidence 45667778888888875
No 19
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.70 E-value=3.5e-16 Score=144.46 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=100.9
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---ccc----CCC-CCeEEEEeecCCChHHHHHHHHHHHhhccccCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQ---NRY----HNT-KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 138 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~---~~~----~~~-kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g 138 (247)
+..+.+.+.|++.++||+.|++.+..++.++.. ... +.. ....++|+||||||||++|+.+|+.+.
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------ 133 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------ 133 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------
Confidence 457889999999999999999999888754321 110 011 123689999999999999999988752
Q ss_pred CCCcceeeecccccCCCCChHHHHHH-HHHHHHH---HHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHh
Q psy1694 139 GTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWII---SNVTACDRAIFIFDEVDKFPK--------------GLLDVIIP 200 (247)
Q Consensus 139 ~~~~~v~~~~~~l~~~~~~~v~~~~~-~l~~~~~---~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~ 200 (247)
.||+.++++.+. ..++++.-.+ .+...+. ..+..+.++||||||||++++ ++|+.|++
T Consensus 134 --~pf~~id~~~l~--~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 134 --VPFAIADATTLT--EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 209 (412)
T ss_pred --CCceecchhhcc--cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence 489988887652 3344432111 1111111 124556789999999999975 38999999
Q ss_pred hcccCcc--c----ccccCCceEEEEEeCC
Q psy1694 201 FIDHHAV--Y----NQISFQNTIFLFLSNS 224 (247)
Q Consensus 201 ~Le~~~~--~----~~~~~~~~ifI~tSN~ 224 (247)
+||.... . ...++.+.+.|.|||.
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 9985432 1 1235567777777776
No 20
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=2.2e-17 Score=150.54 Aligned_cols=122 Identities=11% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-CCCcceeeeccc
Q psy1694 72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GTSRFVHKFNSR 150 (247)
Q Consensus 72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~~~~~v~~~~~~ 150 (247)
+.......++|.+...+.++++++++..+.. .+++.|+|||||+++|+.|+ ..+ .+ ...|||.+||+.
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~------~vLi~GetGtGKel~A~~iH--~~s---~r~~~~PFI~~NCa~ 140 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGL------PVLIIGETGTGKELFARLIH--ALS---ARRAEAPFIAFNCAA 140 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhCCCCC------cEEEecCCCccHHHHHHHHH--Hhh---hcccCCCEEEEEHHH
Confidence 3444555799999999999999998655444 68999999999999999996 334 44 688999999954
Q ss_pred ---------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694 151 ---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 151 ---------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~ 208 (247)
+|++.++. |++...+.. +.++.+.+|++|+|||..||+..|.+|+++||+++++
T Consensus 141 ~~en~~~~eLFG~~kGa---ftGa~~~k~-Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~ 203 (403)
T COG1221 141 YSENLQEAELFGHEKGA---FTGAQGGKA-GLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYR 203 (403)
T ss_pred hCcCHHHHHHhccccce---eecccCCcC-chheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceE
Confidence 44444444 333223333 6788899999999999999999999999999999865
No 21
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.68 E-value=1e-16 Score=142.30 Aligned_cols=141 Identities=10% Similarity=0.152 Sum_probs=111.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------- 151 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------- 151 (247)
.+++++..++.++...++.+..+. .++++|++||||..+|++- |+.+ .+..+||...||+.+
T Consensus 205 ~~v~~S~~mk~~v~qA~k~AmlDA------PLLI~GeTGTGKdLlAkaC--H~~S---~R~~~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 205 QIVAVSPKMKHVVEQAQKLAMLDA------PLLITGETGTGKDLLAKAC--HLAS---PRHSKPFLALNCASLPEDAAES 273 (511)
T ss_pred HHhhccHHHHHHHHHHHHhhccCC------CeEEecCCCchHHHHHHHH--hhcC---cccCCCeeEeecCCCchhHhHH
Confidence 488999999999988888776554 4699999999999999999 7677 777899999999544
Q ss_pred --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc----cccCCceEEEEEeCCC
Q psy1694 152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIFLFLSNSG 225 (247)
Q Consensus 152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~----~~~~~~~ifI~tSN~g 225 (247)
++..++..+ -.+.++.+.++++++|||..|+|.+|.+|++||..+.+.. ..-+-++-+|++|
T Consensus 274 ElFG~apg~~g---------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcat--- 341 (511)
T COG3283 274 ELFGHAPGDEG---------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT--- 341 (511)
T ss_pred HHhcCCCCCCC---------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecc---
Confidence 443333211 2267788899999999999999999999999999987642 1122234477776
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
...+.++.++|++||||
T Consensus 342 ----q~nL~~lv~~g~fReDL 358 (511)
T COG3283 342 ----QVNLVELVQKGKFREDL 358 (511)
T ss_pred ----cccHHHHHhcCchHHHH
Confidence 45678899999999996
No 22
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.67 E-value=7.2e-17 Score=153.19 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=106.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------- 151 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------- 151 (247)
.++|++++++.+.+.++.+...+. .+++.|++||||+++|+.|++ .+ .+...||+.+||+.+
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~------pVLI~GE~GTGKe~lA~~IH~--~S---~r~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDA------TVLILGESGTGKELVAQAIHQ--LS---GRRDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCcCHHHHHHHHHH--hc---CcCCCCEEEeccccCChhHHHH
Confidence 389999999999999998877665 789999999999999999954 45 556789999999755
Q ss_pred --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c-c--cCCceEEEEEeCCC
Q psy1694 152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I--SFQNTIFLFLSNSG 225 (247)
Q Consensus 152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~-~--~~~~~ifI~tSN~g 225 (247)
++...+. |.+.....-.+.++.+.++++|||||+.||+.+|.+|+++|+++.+.. + . ---++-+|++||
T Consensus 282 eLFG~~~ga---ftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~-- 356 (526)
T TIGR02329 282 ELFGYEEGA---FTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATH-- 356 (526)
T ss_pred HhcCCcccc---cccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccC--
Confidence 2222221 111111112245677888999999999999999999999999976532 1 0 001234677764
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.+.+..++|.+|+||
T Consensus 357 -----~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 357 -----CALTTAVQQGRFRRDL 372 (526)
T ss_pred -----CCHHHHhhhcchhHHH
Confidence 4555677788888764
No 23
>CHL00181 cbbX CbbX; Provisional
Probab=99.65 E-value=3.3e-15 Score=132.19 Aligned_cols=141 Identities=13% Similarity=0.208 Sum_probs=99.6
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHH--------hhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC
Q psy1694 66 SSNVRVLEEQLKQHVHGQELAISHICGALKN--------HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD 137 (247)
Q Consensus 66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~--------~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~ 137 (247)
+.+.+.+.+.|.+.++|...+++++.+.+.. ...... +..+++++|+||||||||++|+++|+.++. .
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~-~~~~~~ill~G~pGtGKT~lAr~la~~~~~---~ 86 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS-SNPGLHMSFTGSPGTGKTTVALKMADILYK---L 86 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHH---c
Confidence 4668889999999999999999888765431 111111 335667999999999999999999999765 4
Q ss_pred CC--CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCc
Q psy1694 138 KG--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHA 206 (247)
Q Consensus 138 g~--~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~ 206 (247)
|. ..+++.++.+.+ ++.|.+.......+.+..+.++|+||||++.+ ....++.|++.|+++.
T Consensus 87 g~~~~~~~~~v~~~~l-------~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~ 159 (287)
T CHL00181 87 GYIKKGHLLTVTRDDL-------VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR 159 (287)
T ss_pred CCCCCCceEEecHHHH-------HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC
Confidence 43 345676665443 22232222223345667778899999999986 4578999999998754
Q ss_pred ccccccCCceEEEEEeCC
Q psy1694 207 VYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 207 ~~~~~~~~~~ifI~tSN~ 224 (247)
.+.++|++++.
T Consensus 160 -------~~~~vI~ag~~ 170 (287)
T CHL00181 160 -------DDLVVIFAGYK 170 (287)
T ss_pred -------CCEEEEEeCCc
Confidence 56777777643
No 24
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1e-15 Score=145.89 Aligned_cols=158 Identities=20% Similarity=0.275 Sum_probs=117.6
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 66 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
+.|+...++.|++..+|-+.+.+++.+.+.-....+. -+.-.++|+||||+|||.+++.||+.+.. .||+
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~--~kGpILcLVGPPGVGKTSLgkSIA~al~R--------kfvR 380 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK--LKGPILCLVGPPGVGKTSLGKSIAKALGR--------KFVR 380 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCCchhHHHHHHHHhCC--------CEEE
Confidence 4677888999999999999999999998864322221 23336899999999999999999999744 7999
Q ss_pred eec------ccccCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhcccCc---ccc-
Q psy1694 146 KFN------SRIHFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHA---VYN- 209 (247)
Q Consensus 146 ~~~------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~~~---~~~- 209 (247)
+.. +++-++..- |-+.+.+++.+.+.++ ..++++|||||||..+ -..+||.+||..+ +.|
T Consensus 381 ~sLGGvrDEAEIRGHRRT----YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~Dh 456 (782)
T COG0466 381 ISLGGVRDEAEIRGHRRT----YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDH 456 (782)
T ss_pred EecCccccHHHhcccccc----ccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhc
Confidence 975 455555544 4446666666666665 3599999999999874 4789999999754 222
Q ss_pred ----cccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694 210 ----QISFQNTIFLFLSNSGGTEIMNTFLELRK 238 (247)
Q Consensus 210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~~ 238 (247)
..|.+++.||+|+|.- +.|.+-++|.++
T Consensus 457 YLev~yDLS~VmFiaTANsl-~tIP~PLlDRME 488 (782)
T COG0466 457 YLEVPYDLSKVMFIATANSL-DTIPAPLLDRME 488 (782)
T ss_pred cccCccchhheEEEeecCcc-ccCChHHhccee
Confidence 2489999999999973 335555555443
No 25
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.63 E-value=7.7e-16 Score=146.53 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=105.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|++.+++.+.+.+++.+..+. .++|+|++||||+++|++++. .+ .+...||+.++|+.+.
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~------pvlI~GE~GtGK~~lA~aiH~--~s---~r~~~pfv~inca~~~~~~~e~ 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDA------PLLITGDTGTGKDLLAYACHL--RS---PRGKKPFLALNCASIPDDVVES 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCC------CEEEECCCCccHHHHHHHHHH--hC---CCCCCCeEEeccccCCHHHHHH
Confidence 699999999999999988776554 579999999999999999944 45 5556899999997652
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g 225 (247)
+..++. |.+... .-.+.++.+.+++||||||+.||+.+|.+|+++|+++.+... .-..++-+|++|+.
T Consensus 274 elFG~~~~~---~~~~~~-~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~- 348 (520)
T PRK10820 274 ELFGHAPGA---YPNALE-GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK- 348 (520)
T ss_pred HhcCCCCCC---cCCccc-CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC-
Confidence 211111 111000 112446677889999999999999999999999998754321 01124457887754
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.++.++|.+|+||
T Consensus 349 ------~l~~l~~~g~f~~dL 363 (520)
T PRK10820 349 ------NLVELVQKGEFREDL 363 (520)
T ss_pred ------CHHHHHHcCCccHHH
Confidence 455777889999876
No 26
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.62 E-value=8.6e-16 Score=143.24 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=124.0
Q ss_pred HHHHHhhhhccCccccc------cceeeeeccCCCCCccccccccHHHHHHHHH----hhcCChHHHHHHHHHHHHHhhh
Q psy1694 30 GIAIAAGIAYFSPSIIN------SKFLNGFGGGEACTDKFIQSSNVRVLEEQLK----QHVHGQELAISHICGALKNHFQ 99 (247)
Q Consensus 30 ~~~~av~a~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~----~~l~Gq~~a~~~l~~~l~~~~~ 99 (247)
....++.+++.||+||+ +.+...+. ++..... .....+.+...+. ..++|.+..++.+.+.+.....
T Consensus 84 ~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~--~~~~~~~-l~~~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~ 160 (445)
T TIGR02915 84 DRENAVKAIGLGAYDFYQKPIDPDVLKLIVD--RAFHLYT-LETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAP 160 (445)
T ss_pred CHHHHHHHHHCCccEEEeCCCCHHHHHHHHh--hhhhhhh-hHHHHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhC
Confidence 46778999999999998 33334443 3222111 1111222333222 2489999999998888876544
Q ss_pred cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHH
Q psy1694 100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWI 170 (247)
Q Consensus 100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~ 170 (247)
... .+++.|++||||+++|+.++.. + .....+|+.++|+.+ ++...+. |.+.. ...
T Consensus 161 ~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~---~~~~~-~~~ 225 (445)
T TIGR02915 161 SDI------TVLLLGESGTGKEVLARALHQL--S---DRKDKRFVAINCAAIPENLLESELFGYEKGA---FTGAV-KQT 225 (445)
T ss_pred CCC------CEEEECCCCcCHHHHHHHHHHh--C---CcCCCCeEEEECCCCChHHHHHHhcCCCCCC---cCCCc-cCC
Confidence 333 5789999999999999999554 4 444678999999765 1111111 00000 011
Q ss_pred HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c-c--cCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I--SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~-~--~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.+..+.++++||||++.||+.+|.+|+++|+++.+.. + . .-.++-+|++||. .+.+..++|.+|+||
T Consensus 226 ~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~-------~l~~~~~~~~~~~~L 298 (445)
T TIGR02915 226 LGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQ-------DLKRMIAEGTFREDL 298 (445)
T ss_pred CCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCC-------CHHHHHHcCCccHHH
Confidence 234566788999999999999999999999999875421 1 1 1124568888854 444667788888775
No 27
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.62 E-value=1.6e-15 Score=136.50 Aligned_cols=149 Identities=10% Similarity=0.109 Sum_probs=105.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC--C
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~--~ 156 (247)
.++|.+.+++.+.+.+.+.+..+. .++++|++||||+++|++|+. .+ .+...||+.++|+.+.... .
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~------pVlI~GE~GtGK~~lA~~iH~--~s---~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDK------PVLIIGERGTGKELIASRLHY--LS---SRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHH--hC---CccCCCeEEEeCCCCCHHHHHH
Confidence 589999999999999998876554 689999999999999999954 45 5556799999998752100 0
Q ss_pred ChHH----HHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCChHH
Q psy1694 157 NHVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 157 ~~v~----~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~~~ 228 (247)
..++ .+.+.... ..+.+..+.++++||||++.+|+.+|.+|+++|+++.+.. +. --.++.+|++||.
T Consensus 76 ~lfg~~~~~~~g~~~~-~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~---- 150 (326)
T PRK11608 76 ELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA---- 150 (326)
T ss_pred HHccccccccCCcccc-cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch----
Confidence 0000 00000000 1244677888999999999999999999999999876432 10 1124568888744
Q ss_pred HHHHHHHHHHcCcccccC
Q psy1694 229 IMNTFLELRKSGERYITI 246 (247)
Q Consensus 229 i~~~~~~~~~~g~~Re~~ 246 (247)
.+.++.++|.+|+||
T Consensus 151 ---~l~~l~~~g~f~~dL 165 (326)
T PRK11608 151 ---DLPAMVAEGKFRADL 165 (326)
T ss_pred ---hHHHHHHcCCchHHH
Confidence 555667778887764
No 28
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.62 E-value=1.5e-15 Score=145.10 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=104.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|++.+++.+.+.+++...... .++|+||+||||+++|++|++. + .+...||+.++|+.+.
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~--s---~r~~~pfv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYL--S---PRAKRPFVKVNCAALSETLLES 265 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHh--C---CCCCCCeEEeecCCCCHHHHHH
Confidence 589999999999999998876554 6799999999999999999654 4 4456799999997651
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g 225 (247)
+..++. |.+... .-.+.+..+.++++|||||+.+|+..|.+|+++|+++.+.. + ....++.+|++||..
T Consensus 266 ~lfg~~~~~---~~~~~~-~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 ELFGHEKGA---FTGAIA-QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred HHcCCCCCc---cCCCCc-CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 111111 000000 01123556778999999999999999999999999876432 1 111245688888764
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
. .+..++|.+|+||
T Consensus 342 l-------~~~~~~~~f~~~L 355 (534)
T TIGR01817 342 L-------EEAVAKGEFRADL 355 (534)
T ss_pred H-------HHHHHcCCCCHHH
Confidence 3 3456688888875
No 29
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.61 E-value=2.2e-15 Score=143.10 Aligned_cols=146 Identities=13% Similarity=0.172 Sum_probs=106.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|++.+++.+.+.++.....+. .++|+|++||||+++|++|++. + .+...||+.++|+.+.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~------pVlI~Ge~GtGK~~~A~~ih~~--s---~r~~~p~v~v~c~~~~~~~~e~ 256 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDL------NVLILGETGVGKELVARAIHAA--S---PRADKPLVYLNCAALPESLAES 256 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHh--C---CcCCCCeEEEEcccCChHHHHH
Confidence 489999999999999998876655 7899999999999999999554 4 4556799999997652
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g 225 (247)
+...+. |.+.... -.+.+..+.++++|||||+.||+.+|.+|+++|+++.+.. + ....++-+|++||.
T Consensus 257 ~lfG~~~g~---~~ga~~~-~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~- 331 (509)
T PRK05022 257 ELFGHVKGA---FTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR- 331 (509)
T ss_pred HhcCccccc---cCCCccc-CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC-
Confidence 111111 1000000 1134667888999999999999999999999999876422 1 11124557888754
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.+...+|.+|+||
T Consensus 332 ------~l~~~~~~~~f~~dL 346 (509)
T PRK05022 332 ------DLREEVRAGRFRADL 346 (509)
T ss_pred ------CHHHHHHcCCccHHH
Confidence 555777889998875
No 30
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=3.3e-15 Score=148.24 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=99.6
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
.+...+++.|++.++||+.+++.+.+.+......+. .+.| .++|+||||||||++|++||+.+.. +|+.+
T Consensus 309 ~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~~~~-~lll~GppG~GKT~lAk~iA~~l~~--------~~~~i 378 (775)
T TIGR00763 309 LDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-MKGP-ILCLVGPPGVGKTSLGKSIAKALNR--------KFVRF 378 (775)
T ss_pred hhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-CCCc-eEEEECCCCCCHHHHHHHHHHHhcC--------CeEEE
Confidence 457788999999999999999999887664432222 2233 7899999999999999999998643 67777
Q ss_pred ecccc------cCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhccc---Ccccc--
Q psy1694 147 FNSRI------HFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDH---HAVYN-- 209 (247)
Q Consensus 147 ~~~~l------~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~---~~~~~-- 209 (247)
+++.. .++...+++ ...+.+.+.+..+ ..++++|||||++.++ ..+.|+++||+ +.+.+
T Consensus 379 ~~~~~~~~~~i~g~~~~~~g----~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~ 454 (775)
T TIGR00763 379 SLGGVRDEAEIRGHRRTYVG----AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHY 454 (775)
T ss_pred eCCCcccHHHHcCCCCceeC----CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCcccccc
Confidence 65432 122222222 1122222333332 3479999999999764 35889999985 23332
Q ss_pred ---cccCCceEEEEEeCCC
Q psy1694 210 ---QISFQNTIFLFLSNSG 225 (247)
Q Consensus 210 ---~~~~~~~ifI~tSN~g 225 (247)
.+|+++++||+|||..
T Consensus 455 ~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 455 LDVPFDLSKVIFIATANSI 473 (775)
T ss_pred CCceeccCCEEEEEecCCc
Confidence 3578999999999974
No 31
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.60 E-value=3.3e-16 Score=147.72 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc---------cc
Q psy1694 81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS---------RI 151 (247)
Q Consensus 81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~---------~l 151 (247)
.+++...+.+...+.++..... .+++.|+|||||..+||++++. + . ..+|||.+||. ++
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~------pvll~GEtGtGKe~laraiH~~--s---~-~~gpfvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDL------PVLLQGETGTGKEVLARAIHQN--S---E-AAGPFVAVNCAAIPEALIESEL 383 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCC------CeEecCCcchhHHHHHHHHHhc--c---c-ccCCeEEEEeccchHHhhhHHH
Confidence 4666677777777776655444 5799999999999999999554 4 4 67899999994 44
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc------ccccCCceEEEEEeCCC
Q psy1694 152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSG 225 (247)
Q Consensus 152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~------~~~~~~~~ifI~tSN~g 225 (247)
++-.++. |++...+-.++.++.++++++|+|||+.||.++|..||++|+++.++ ..||++ +|.+|
T Consensus 384 FGy~~Ga---fTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~at--- 454 (606)
T COG3284 384 FGYVAGA---FTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAAT--- 454 (606)
T ss_pred hccCccc---cccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEE---EEecc---
Confidence 4444444 33333344557888999999999999999999999999999998754 235666 44444
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
++.+.+++++|+|||||
T Consensus 455 ----h~dl~~lv~~g~fredL 471 (606)
T COG3284 455 ----HRDLAQLVEQGRFREDL 471 (606)
T ss_pred ----CcCHHHHHHcCCchHHH
Confidence 67899999999999997
No 32
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.60 E-value=3.2e-15 Score=139.64 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=126.3
Q ss_pred hHHHHHhhhhccCcccccc------ceeeeeccCCCCCccccccccHHHHHHHHHh-----hcCChHHHHHHHHHHHHHh
Q psy1694 29 SGIAIAAGIAYFSPSIINS------KFLNGFGGGEACTDKFIQSSNVRVLEEQLKQ-----HVHGQELAISHICGALKNH 97 (247)
Q Consensus 29 ~~~~~av~a~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~-----~l~Gq~~a~~~l~~~l~~~ 97 (247)
.....++.++..||+||+. .+...+. .++.... .......++..+.. .++|+++++..+.+.+...
T Consensus 86 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~--~~l~~~~-l~~~~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~~~~ 162 (457)
T PRK11361 86 AEVETAVEALRCGAFDYVIKPFDLDELNLIVQ--RALQLQS-MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKI 162 (457)
T ss_pred CCHHHHHHHHHCCccEEEecccCHHHHHHHHh--hhccccc-cchhhhhhhhhhhccccccceecccHHHhHHHHHHHHH
Confidence 3456778999999999982 2333333 3333221 22233333444332 4889999999998888877
Q ss_pred hhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc---------CCCCChHHHHHHHHHH
Q psy1694 98 FQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH---------FPNENHVSLYRLQLTN 168 (247)
Q Consensus 98 ~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~---------~~~~~~v~~~~~~l~~ 168 (247)
..... .+++.|++||||+++|+.++.. + .+...+|+.++|..+. +...+. +.+...
T Consensus 163 a~~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~---~~~~~~- 227 (457)
T PRK11361 163 ALSQA------SVLISGESGTGKELIARAIHYN--S---RRAKGPFIKVNCAALPESLLESELFGHEKGA---FTGAQT- 227 (457)
T ss_pred cCCCc------EEEEEcCCCccHHHHHHHHHHh--C---CCCCCCeEEEECCCCCHHHHHHHhcCCCCCC---CCCCCC-
Confidence 66554 6899999999999999999553 4 4556799999997652 111110 000000
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 169 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 169 ~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
.-.+.+..+.++++||||++.+|+.+|.+|+++|+++.+.. +. -..++-+|++||.. +.++.++|.+|+
T Consensus 228 ~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~-------l~~~~~~g~~~~ 300 (457)
T PRK11361 228 LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD-------LQAMVKEGTFRE 300 (457)
T ss_pred CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC-------HHHHHHcCCchH
Confidence 01134566778999999999999999999999999876431 10 11245688888653 345667777777
Q ss_pred cC
Q psy1694 245 TI 246 (247)
Q Consensus 245 ~~ 246 (247)
|+
T Consensus 301 ~l 302 (457)
T PRK11361 301 DL 302 (457)
T ss_pred HH
Confidence 64
No 33
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.59 E-value=2e-14 Score=127.08 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=96.4
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHh-----hh-cccCCCC-CeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ-NRYHNTK-ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~-----~~-~~~~~~k-pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~ 139 (247)
...+.+.+.|.+.++|.+.+++.+.+.+.-. .. ....+.. .+.++|+||||||||++|+++|+.++. .+.
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~---~g~ 87 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR---LGY 87 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cCC
Confidence 4466777788878999999999887654321 11 0111122 346899999999999999999999876 443
Q ss_pred --CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCccc
Q psy1694 140 --TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 140 --~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~ 208 (247)
..+++.++++.+.. .|.+.....+.+.+..+.+++|||||++.+ +..+++.|++.|+++.
T Consensus 88 ~~~~~~v~v~~~~l~~-------~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-- 158 (284)
T TIGR02880 88 VRKGHLVSVTRDDLVG-------QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-- 158 (284)
T ss_pred cccceEEEecHHHHhH-------hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC--
Confidence 34688777655422 121111223445677778899999999987 3567899999998754
Q ss_pred ccccCCceEEEEEeCC
Q psy1694 209 NQISFQNTIFLFLSNS 224 (247)
Q Consensus 209 ~~~~~~~~ifI~tSN~ 224 (247)
.+.++|++++.
T Consensus 159 -----~~~~vI~a~~~ 169 (284)
T TIGR02880 159 -----DDLVVILAGYK 169 (284)
T ss_pred -----CCEEEEEeCCc
Confidence 56777777654
No 34
>KOG0989|consensus
Probab=99.59 E-value=6e-15 Score=128.80 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=87.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCC--
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPN-- 155 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~-- 155 (247)
.+.||+.+++.+.+++.+ ...+ +++|+||||||||.+|+++|+.+++ +.. .......+.+.-.|-.
T Consensus 37 e~~gQe~vV~~L~~a~~~-~~lp-------~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-RILP-------HYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred hhcchHHHHHHHHHHHhh-cCCc-------eEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhcccccccccch
Confidence 499999999999999987 3333 6899999999999999999999988 221 1122222222211111
Q ss_pred CChHHHHHHHHHHHHHHHH-----HhC-CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 156 ENHVSLYRLQLTNWIISNV-----TAC-DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l-----~~~-~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
...+..|. .+.... ..| ++.||||||.|.|+.+.|.+|+++||... +++.||+++|.-...|
T Consensus 106 r~Kik~fa-----kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 106 REKIKNFA-----KLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------RTTRFILICNYLSRII 173 (346)
T ss_pred hhhhcCHH-----HHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------cceEEEEEcCChhhCC
Confidence 01111111 111111 112 34999999999999999999999999965 8899999999865544
No 35
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.58 E-value=5e-15 Score=144.27 Aligned_cols=144 Identities=8% Similarity=0.137 Sum_probs=103.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+.+.+++.+..+. .++|+|++||||+++|++|++. + .+...||+.++|+.+. . ..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~~A~~ih~~--s---~r~~~pfv~vnc~~~~--~-~~ 391 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSF------PVLLCGEEGVGKALLAQAIHNE--S---ERAAGPYIAVNCQLYP--D-EA 391 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCcCHHHHHHHHHHh--C---CccCCCeEEEECCCCC--h-HH
Confidence 488999999999999988876554 5899999999999999999554 4 4456799999997752 1 10
Q ss_pred HHHHHHHHH--------HHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc-c-CCceEEEEEeCCCh
Q psy1694 159 VSLYRLQLT--------NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI-S-FQNTIFLFLSNSGG 226 (247)
Q Consensus 159 v~~~~~~l~--------~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~-~-~~~~ifI~tSN~g~ 226 (247)
....+- +...+.++.+.+++||||||+.||+.+|.+|+++|+++.+.. +. . --++.+|++||..
T Consensus 392 ---~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~- 467 (638)
T PRK11388 392 ---LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD- 467 (638)
T ss_pred ---HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC-
Confidence 000000 001134667788999999999999999999999999876532 10 0 0134588887653
Q ss_pred HHHHHHHHHHHHcCcccccC
Q psy1694 227 TEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 227 ~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.++.++|.+|+||
T Consensus 468 ------l~~~~~~~~f~~dL 481 (638)
T PRK11388 468 ------LAMLVEQNRFSRQL 481 (638)
T ss_pred ------HHHHHhcCCChHHH
Confidence 35667778888875
No 36
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.57 E-value=3.8e-14 Score=123.68 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=88.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHh----h--hccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC--CCCccee
Q psy1694 75 QLKQHVHGQELAISHICGALKNH----F--QNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVH 145 (247)
Q Consensus 75 ~L~~~l~Gq~~a~~~l~~~l~~~----~--~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g--~~~~~v~ 145 (247)
.|++ ++|.+.+++.+.+.+... . .... .+..+..++|+||||||||++|+++|+.++. .+ ...+++.
T Consensus 4 ~l~~-~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v~ 79 (261)
T TIGR02881 4 ELSR-MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLIE 79 (261)
T ss_pred HHHH-hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceEE
Confidence 4544 999999998887655321 1 0111 1234567999999999999999999998765 33 2456777
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceE
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTI 217 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~i 217 (247)
+.++.+.. .|.+.....+.+.+..+.+++|||||++.+. ...++.|++.+++++ .+.+
T Consensus 80 ~~~~~l~~-------~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------~~~~ 145 (261)
T TIGR02881 80 VERADLVG-------EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------NEFV 145 (261)
T ss_pred ecHHHhhh-------hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------CCEE
Confidence 76665432 2222223444566777778999999999876 357889999998854 3445
Q ss_pred EEEEeC
Q psy1694 218 FLFLSN 223 (247)
Q Consensus 218 fI~tSN 223 (247)
+|++++
T Consensus 146 vila~~ 151 (261)
T TIGR02881 146 LILAGY 151 (261)
T ss_pred EEecCC
Confidence 555543
No 37
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.56 E-value=4e-15 Score=139.71 Aligned_cols=146 Identities=11% Similarity=0.176 Sum_probs=103.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|.+.+++.+...+........ .+++.|++||||+++|+++++. + .+...||+.++|+.+.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~i~i~c~~~~~~~~~~ 207 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSI------SVLINGESGTGKELVAHALHRH--S---PRAKAPFIALNMAAIPKDLIES 207 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCC------eEEEEeCCCCcHHHHHHHHHhc--C---CCCCCCeEeeeCCCCCHHHHHH
Confidence 488999999999888877654443 6899999999999999999554 4 4556899999997651
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g 225 (247)
++..+. |.+.. ....+.+..+.++++||||++.||+..|.+|+++|+++.+... ....++-+|+|||.
T Consensus 208 ~lfg~~~g~---~~~~~-~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~- 282 (469)
T PRK10923 208 ELFGHEKGA---FTGAN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ- 282 (469)
T ss_pred HhcCCCCCC---CCCCC-cCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC-
Confidence 111111 00000 0011235567789999999999999999999999999765321 11235568888855
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.++.++|.+|+||
T Consensus 283 ------~l~~~~~~~~~~~~L 297 (469)
T PRK10923 283 ------NLEQRVQEGKFREDL 297 (469)
T ss_pred ------CHHHHHHcCCchHHH
Confidence 445677888888775
No 38
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.55 E-value=1.4e-14 Score=142.29 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=104.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|++++++.+.+.+...+..+. .+++.||+|||||++|++|+.. + .+...||+.++|..+.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~--s---~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNL--S---GRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHh--c---CCCCCCeEEEecccCChhHhhh
Confidence 489999999999999998776554 6899999999999999999554 4 4456799999997652
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g 225 (247)
++..+. +.+....+ .+.+..+.++++|||||+.+|+++|.+|+++|+++.+.. + .-..++-+|++||.
T Consensus 446 ~lfg~~~~~---~~g~~~~~-~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~- 520 (686)
T PRK15429 446 DLFGHERGA---FTGASAQR-IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR- 520 (686)
T ss_pred hhcCccccc---ccccccch-hhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC-
Confidence 111111 11111111 245677888999999999999999999999999876432 1 11134568888865
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.+...+|.+|+|+
T Consensus 521 ------~l~~~~~~~~f~~~L 535 (686)
T PRK15429 521 ------DLKKMVADREFRSDL 535 (686)
T ss_pred ------CHHHHHHcCcccHHH
Confidence 344556777777764
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.55 E-value=3.5e-14 Score=120.16 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=66.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 157 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~ 157 (247)
.++||+..+..+.-.++.... .+.++ .++|+||||+|||++|+.||+.+-. +|...+.+.+ .
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------~~~~~sg~~i-----~ 87 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANELGV--------NFKITSGPAI-----E 87 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHCT----------EEEEECCC-------
T ss_pred HccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhccCC--------CeEeccchhh-----h
Confidence 599999999887655554322 12333 5899999999999999999998532 5544433222 1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 158 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 158 ~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
..+ .+...+. .+ ..+.|+|+|||+++++.+|+.|+++||++.+
T Consensus 88 k~~----dl~~il~-~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 88 KAG----DLAAILT-NL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp SCH----HHHHHHH-T----TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred hHH----HHHHHHH-hc--CCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence 111 1222221 12 3568999999999999999999999999874
No 40
>KOG2004|consensus
Probab=99.55 E-value=2e-14 Score=136.79 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=116.5
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHH-HhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALK-NHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~-~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
.++.+-++.|++..+|-+++++++.+.+. +.+.+.. +...+.|+||||+|||.+|+.||+.|.. .|++
T Consensus 400 ~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~---qGkIlCf~GPPGVGKTSI~kSIA~ALnR--------kFfR 468 (906)
T KOG2004|consen 400 LDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV---QGKILCFVGPPGVGKTSIAKSIARALNR--------KFFR 468 (906)
T ss_pred hhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC---CCcEEEEeCCCCCCcccHHHHHHHHhCC--------ceEE
Confidence 45667788899999999999999998876 2333333 5557999999999999999999999744 6888
Q ss_pred eec------ccccCCCCChHHHHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCh----hhHHHHHhhcccCc---ccc-
Q psy1694 146 KFN------SRIHFPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPK----GLLDVIIPFIDHHA---VYN- 209 (247)
Q Consensus 146 ~~~------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~--~~vlilDEiek~~~----~~~~~Ll~~Le~~~---~~~- 209 (247)
+.. +++.++..- |.+.+.+++.+.++.+. .++++||||||+.. +-..+||.+||..+ +.|
T Consensus 469 fSvGG~tDvAeIkGHRRT----YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDH 544 (906)
T KOG2004|consen 469 FSVGGMTDVAEIKGHRRT----YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDH 544 (906)
T ss_pred EeccccccHHhhccccee----eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhh
Confidence 864 455555444 55567777777777764 59999999999976 34689999999754 222
Q ss_pred ----cccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694 210 ----QISFQNTIFLFLSNSGGTEIMNTFLELRK 238 (247)
Q Consensus 210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~~ 238 (247)
.+|.+++.||+|.|.- +.|..-++|.++
T Consensus 545 YLdVp~DLSkVLFicTAN~i-dtIP~pLlDRME 576 (906)
T KOG2004|consen 545 YLDVPVDLSKVLFICTANVI-DTIPPPLLDRME 576 (906)
T ss_pred ccccccchhheEEEEecccc-ccCChhhhhhhh
Confidence 3699999999999973 334455555443
No 41
>PRK15115 response regulator GlrR; Provisional
Probab=99.51 E-value=2.9e-14 Score=132.97 Aligned_cols=187 Identities=11% Similarity=0.127 Sum_probs=118.7
Q ss_pred HHHHHhhhhccCccccccc------eeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccC
Q psy1694 30 GIAIAAGIAYFSPSIINSK------FLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH 103 (247)
Q Consensus 30 ~~~~av~a~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~ 103 (247)
....++.++..||++|+.+ +...+. +++.... . .. .......++|.+..+..+.+.+........
T Consensus 88 ~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~--~~~~~~~-~-~~----~~~~~~~lig~s~~~~~~~~~~~~~a~~~~- 158 (444)
T PRK15115 88 SIPDAVAATQQGVFSFLTKPVDRDALYKAID--DALEQSA-P-AT----DERWREAIVTRSPLMLRLLEQARMVAQSDV- 158 (444)
T ss_pred CHHHHHHHHhcChhhhccCCCCHHHHHHHHH--HHHHhhh-c-cc----ccchhhcccccCHHHHHHHHHHHhhccCCC-
Confidence 3456788999999988733 111121 1111000 0 00 011223578888888877777766554433
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC---------CCCChHHHHHHHHHHHHHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF---------PNENHVSLYRLQLTNWIISNV 174 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~---------~~~~~v~~~~~~l~~~~~~~l 174 (247)
.+++.|++||||+++|+.+++. + .+...+|+.++|..+.. ...+. |.+.. ....+.+
T Consensus 159 -----~vli~Ge~GtGk~~lA~~ih~~--s---~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~---~~~~~-~~~~g~~ 224 (444)
T PRK15115 159 -----SVLINGQSGTGKEILAQAIHNA--S---PRASKPFIAINCGALPEQLLESELFGHARGA---FTGAV-SNREGLF 224 (444)
T ss_pred -----eEEEEcCCcchHHHHHHHHHHh--c---CCCCCCeEEEeCCCCCHHHHHHHhcCCCcCC---CCCCc-cCCCCcE
Confidence 6789999999999999999554 4 44567999999976521 11110 00000 0011245
Q ss_pred HhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c--c-cCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 175 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--I-SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~--~-~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
..+.++++||||++.||+..|.+|+++|+++.+.. + . ...++.+|++|+. .+.+.+.+|.+|+|+
T Consensus 225 ~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~-------~l~~~~~~~~f~~~l 293 (444)
T PRK15115 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR-------DLPKAMARGEFREDL 293 (444)
T ss_pred EECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC-------CHHHHHHcCCccHHH
Confidence 56778999999999999999999999999876421 1 1 1125678888864 456778888888875
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=9.5e-14 Score=119.11 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=87.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCC--CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNT--KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~--kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~ 156 (247)
.++||+.|.+..+ .+-.++.+|..-+ -|.++||+||||||||++|+++|+.. ..|++.+...++
T Consensus 122 dViGqEeAK~kcr-li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--------kvp~l~vkat~l----- 187 (368)
T COG1223 122 DVIGQEEAKRKCR-LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--------KVPLLLVKATEL----- 187 (368)
T ss_pred hhhchHHHHHHHH-HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--------CCceEEechHHH-----
Confidence 5999999998653 3444555543111 46789999999999999999998773 358888887665
Q ss_pred ChHHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 157 NHVSLYRLQLTNWIISNVTA---CDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 157 ~~v~~~~~~l~~~~~~~l~~---~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
+++|.+.-..++.+...+ ...+++||||+|.+.. .+.|+||.-||.-. .-.-+++|..
T Consensus 188 --iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-----eneGVvtIaa 260 (368)
T COG1223 188 --IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-----ENEGVVTIAA 260 (368)
T ss_pred --HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-----cCCceEEEee
Confidence 344444333444444443 3459999999998754 46788888887532 1234678888
Q ss_pred eCCC
Q psy1694 222 SNSG 225 (247)
Q Consensus 222 SN~g 225 (247)
||..
T Consensus 261 TN~p 264 (368)
T COG1223 261 TNRP 264 (368)
T ss_pred cCCh
Confidence 8863
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.5e-13 Score=126.79 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------ee------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HK------ 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------~~------ 146 (247)
.++||+.++..+.+++.... .|-.++|+||+|||||++|+.+|+.+.+..... ..++- .+
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcHHHHHHccCCc
Confidence 49999999998887776421 233589999999999999999999987611000 01110 00
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-++.......+...++ +.+.+...-....+.|+||||+++|+.+.++.|++.||+.+ .+++||+++|.
T Consensus 91 dviEIdaas~~gVd~IRe-L~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------~~viFILaTte 160 (484)
T PRK14956 91 DVLEIDAASNRGIENIRE-LRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------AHIVFILATTE 160 (484)
T ss_pred cceeechhhcccHHHHHH-HHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-------CceEEEeecCC
Confidence 001111111111222221 12222211123456899999999999999999999999976 78899999876
No 44
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.3e-13 Score=129.08 Aligned_cols=130 Identities=14% Similarity=0.177 Sum_probs=85.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------eee-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VHK----- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~~----- 146 (247)
.++||+.+++.+.+++.... .|-.++|+||+|||||++|+++|+.+.+. .+. ..|| ..+
T Consensus 17 divGq~~v~~~L~~~~~~~~-------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-------LHHAYLFTGTRGVGKTTISRILAKCLNCE--KGVSANPCNDCENCREIDEGRF 87 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-------CCeeEEEECCCCCCHHHHHHHHHHHhcCC--CCCCcccCCCCHHHHHHhcCCC
Confidence 39999999998888886421 33368999999999999999999998762 111 1111 000
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.-+++......++..++. .+.+...-....+.|+||||+|+|+++.++.|++.||+.+ .+++||++||..
T Consensus 88 ~d~~eidaas~~~v~~iR~l-~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-------~~~~fIlattd~ 159 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTREL-LDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-------SHVKFILATTDH 159 (509)
T ss_pred ceEEEEcccccCCHHHHHHH-HHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-------CCeEEEEEECCh
Confidence 1111221122233333221 1111111223456899999999999999999999999976 678899988653
No 45
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.49 E-value=9.1e-14 Score=129.56 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
..+.++.+.+.+.++|++.+++.+..++. ... .++|.||||||||++|+++++.... ..+|...
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aal----ag~------hVLL~GpPGTGKT~LAraLa~~~~~------~~~F~~~ 72 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAAL----SGE------SVFLLGPPGIAKSLIARRLKFAFQN------ARAFEYL 72 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHc----cCC------CEEEECCCChhHHHHHHHHHHHhcc------cCcceee
Confidence 34677889999999999999988776654 222 5799999999999999999887422 1255555
Q ss_pred ecc-----cccCCCCChHHHH--HHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc---cCCce
Q psy1694 147 FNS-----RIHFPNENHVSLY--RLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI---SFQNT 216 (247)
Q Consensus 147 ~~~-----~l~~~~~~~v~~~--~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~---~~~~~ 216 (247)
.+. +++++.. +... .+.+.....+.+..+ .++|+|||+++++..|+.|+++|+++.++.+- ....-
T Consensus 73 ~~~fttp~DLfG~l~--i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~r 148 (498)
T PRK13531 73 MTRFSTPEEVFGPLS--IQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMR 148 (498)
T ss_pred eeeecCcHHhcCcHH--HhhhhhcCchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence 442 2222210 0000 000000111112122 48999999999999999999999998866542 32333
Q ss_pred EEEEEeCCCh
Q psy1694 217 IFLFLSNSGG 226 (247)
Q Consensus 217 ifI~tSN~g~ 226 (247)
+++.+||--+
T Consensus 149 fiv~ATN~LP 158 (498)
T PRK13531 149 LLVTASNELP 158 (498)
T ss_pred EEEEECCCCc
Confidence 5666666433
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.5e-13 Score=130.14 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc---CCC-CCcceee--------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK---DKG-TSRFVHK-------- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~---~g~-~~~~v~~-------- 146 (247)
.++||+.+++.|.+++.... .+-.+||+||+|+|||++|+.+++.+.+... .+. ..+|-..
T Consensus 17 dVIGQe~vv~~L~~al~~gR-------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 49999999998888887432 2336899999999999999999999876110 110 0111100
Q ss_pred ----ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 147 ----FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 147 ----~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+.-+++......++..++.+ +.+...-....+.|+||||+|+|+...+|.||+.||+.. .+++||++|
T Consensus 90 G~hpDviEIdAas~~gVDdIReLi-e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-------~~v~FILaT 161 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLL-DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------EHVKFILAT 161 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHH-HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-------CCceEEEEe
Confidence 11111111112233222211 111111123456899999999999999999999999976 788999999
Q ss_pred CCCh
Q psy1694 223 NSGG 226 (247)
Q Consensus 223 N~g~ 226 (247)
|...
T Consensus 162 tep~ 165 (700)
T PRK12323 162 TDPQ 165 (700)
T ss_pred CChH
Confidence 8643
No 47
>PLN03025 replication factor C subunit; Provisional
Probab=99.49 E-value=3e-13 Score=121.35 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=82.6
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++||+.+++.+.+.+. .+. .| .++|+||||||||++|+++|+.+++ .+....++.++.+.. ..+
T Consensus 15 ~~g~~~~~~~L~~~~~----~~~---~~-~lll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~eln~sd~-----~~~ 78 (319)
T PLN03025 15 IVGNEDAVSRLQVIAR----DGN---MP-NLILSGPPGTGKTTSILALAHELLG---PNYKEAVLELNASDD-----RGI 78 (319)
T ss_pred hcCcHHHHHHHHHHHh----cCC---Cc-eEEEECCCCCCHHHHHHHHHHHHhc---ccCccceeeeccccc-----ccH
Confidence 8899998887765544 221 23 5789999999999999999999877 443334444444321 112
Q ss_pred HHHHHHHHHHHHHH--HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 160 SLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 160 ~~~~~~l~~~~~~~--l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
+..++.+....... .......+++|||+|.|+.+.|+.|++.+|+.. ..+.||+++|....
T Consensus 79 ~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-------~~t~~il~~n~~~~ 141 (319)
T PLN03025 79 DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-------NTTRFALACNTSSK 141 (319)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-------CCceEEEEeCCccc
Confidence 22222211111110 011245899999999999999999999999754 45678999986543
No 48
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.49 E-value=2.7e-14 Score=112.96 Aligned_cols=113 Identities=12% Similarity=0.213 Sum_probs=83.2
Q ss_pred CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHH
Q psy1694 81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS 160 (247)
Q Consensus 81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~ 160 (247)
+|++.+++.+.+.+......+. .++++|++||||+++|+.|+.. + .....+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~------pvli~GE~GtGK~~~A~~lh~~--~---~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSS------PVLITGEPGTGKSLLARALHRY--S---GRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHT--T---TTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhCCCC------cEEEEcCCCCCHHHHHHHHHhh--c---CccCCCeEEechhhCc--------
Confidence 5899999999999998876555 6799999999999999999553 4 4445678777776531
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694 161 LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 161 ~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~ 228 (247)
.+.+....+++++|+|+|.++++.|..|...|+..+ -.+.-+|++|....+.
T Consensus 62 ----------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~------~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 62 ----------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE------RSNVRLIASSSQDLEE 113 (138)
T ss_dssp ----------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT------TTTSEEEEEECC-CCC
T ss_pred ----------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC------CCCeEEEEEeCCCHHH
Confidence 123444688999999999999999999999998742 1455688888765443
No 49
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2.5e-13 Score=125.02 Aligned_cols=138 Identities=12% Similarity=0.204 Sum_probs=85.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccC--CCCCeEEEEeecCCChHHHHHHHHHHHhhccccC----CCCCc---ceeeecc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYH--NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSR---FVHKFNS 149 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~--~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~----g~~~~---~v~~~~~ 149 (247)
.|+||+.+++.+.+++......... ...|-.++|+||+|+|||++|+.+|+.+.+.... |.... +..-+.+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4899999999999998754211110 1235579999999999999999999998772100 10000 0011111
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 150 RIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 150 ~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+.+-.+.......+++...+ .... ..++.|+||||+|+|++..++.|++.||+++ .+++||++|+.
T Consensus 86 D~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-------~~~~fIL~a~~ 156 (394)
T PRK07940 86 DVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-------PRTVWLLCAPS 156 (394)
T ss_pred CEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-------CCCeEEEEECC
Confidence 221111110000111222222 2222 2355899999999999999999999999976 66788888876
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.2e-13 Score=131.63 Aligned_cols=132 Identities=13% Similarity=0.171 Sum_probs=86.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCccee------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH------------ 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~------------ 145 (247)
.++||+.+++.+.+++.... -|-.++|+||+|||||++|+++|+.+++. .+. ..+|..
T Consensus 17 dIIGQe~Iv~~LknaI~~~r-------l~HAyLFtGPpGtGKTTLARiLAk~Lnce--~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR-------LHHAYLFTGTRGVGKTSLARLFAKGLNCE--QGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC-------CCeEEEEECCCCCCHHHHHHHHHHhccCc--cCCCCCCCCCchHHHHHhcCCC
Confidence 48999999998887776421 23357999999999999999999998762 111 111111
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
.++-++.......+...++ +...+...-....+.|+||||+++|+.+.++.||+.||+++ .+++||+++|..
T Consensus 88 ~DviEidAas~~kVDdIRe-Lie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-------~~vrFILaTTe~ 159 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRE-LLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-------EHVKFLLATTDP 159 (944)
T ss_pred ceEEEeccccccCHHHHHH-HHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-------CCeEEEEECCCc
Confidence 0111111111122333332 22222222223567999999999999999999999999976 678888887654
Q ss_pred hH
Q psy1694 226 GT 227 (247)
Q Consensus 226 ~~ 227 (247)
..
T Consensus 160 ~k 161 (944)
T PRK14949 160 QK 161 (944)
T ss_pred hh
Confidence 43
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.46 E-value=7.1e-13 Score=102.50 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=77.7
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCC
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVD 188 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEie 188 (247)
++|+||||||||++|+.+|+.+- .+++.++++++..... ......+...+.. ..... .++++|||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--------~~~~~i~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--------FPFIEIDGSELISSYA---GDSEQKIRDFFKK-AKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--------SEEEEEETTHHHTSST---THHHHHHHHHHHH-HHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--------cccccccccccccccc---ccccccccccccc-ccccccceeeeeccch
Confidence 58999999999999999999852 3788888887753322 2233344444533 33333 6999999999
Q ss_pred CCChhh-----------HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694 189 KFPKGL-----------LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 234 (247)
Q Consensus 189 k~~~~~-----------~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~ 234 (247)
.+.+.. ++.|+..++.... ..++.++|+|||. .+.+...+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~~~~~~vI~ttn~-~~~i~~~l~ 120 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSS----KNSRVIVIATTNS-PDKIDPALL 120 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTT----TSSSEEEEEEESS-GGGSCHHHH
T ss_pred hcccccccccccccccccceeeeccccccc----ccccceeEEeeCC-hhhCCHhHH
Confidence 998765 8889988887541 1356899999999 666665544
No 52
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=4.2e-13 Score=117.33 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHH
Q psy1694 84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYR 163 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~ 163 (247)
++.++.+.+.+..++.... .++|.||||||||++|+.+|+.+ + .+++.++|..-. .....++.+.
T Consensus 4 t~~~~~l~~~~l~~l~~g~------~vLL~G~~GtGKT~lA~~la~~l-g-------~~~~~i~~~~~~-~~~dllg~~~ 68 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGY------PVHLRGPAGTGKTTLAMHVARKR-D-------RPVMLINGDAEL-TTSDLVGSYA 68 (262)
T ss_pred CHHHHHHHHHHHHHHhcCC------eEEEEcCCCCCHHHHHHHHHHHh-C-------CCEEEEeCCccC-CHHHHhhhhc
Confidence 4567777777777666554 57899999999999999998863 3 377877764311 1111111111
Q ss_pred H----HH-HH---------------HHHHHHH--hCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-c--------c
Q psy1694 164 L----QL-TN---------------WIISNVT--ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I--------S 212 (247)
Q Consensus 164 ~----~l-~~---------------~~~~~l~--~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~--------~ 212 (247)
+ .. .. +..+.+. ...++++++||++++++++++.|+++|+++.+... . -
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~ 148 (262)
T TIGR02640 69 GYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDV 148 (262)
T ss_pred ccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEec
Confidence 0 00 00 0001111 23457999999999999999999999998764321 0 1
Q ss_pred CCceEEEEEeCCC
Q psy1694 213 FQNTIFLFLSNSG 225 (247)
Q Consensus 213 ~~~~ifI~tSN~g 225 (247)
..+..+|+|||..
T Consensus 149 ~~~frvIaTsN~~ 161 (262)
T TIGR02640 149 HPEFRVIFTSNPV 161 (262)
T ss_pred CCCCEEEEeeCCc
Confidence 1355689999975
No 53
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.1e-13 Score=118.76 Aligned_cols=142 Identities=21% Similarity=0.295 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHh----hhcccCCC---CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNH----FQNRYHNT---KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~----~~~~~~~~---kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~ 139 (247)
+....+++.|++.++||+.|...+.=++.+| .......+ ...++++.||+|+|||++|+.+|+.|.
T Consensus 50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln------- 122 (408)
T COG1219 50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN------- 122 (408)
T ss_pred CChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-------
Confidence 4567899999999999999998776555543 11111011 123689999999999999999999964
Q ss_pred CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhC-------CCeEEEEeCCCCCC--------------hhhHHHH
Q psy1694 140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC-------DRAIFIFDEVDKFP--------------KGLLDVI 198 (247)
Q Consensus 140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~-------~~~vlilDEiek~~--------------~~~~~~L 198 (247)
.||.-.++.++ .+.+++++-.+ +.+...++.| .++++++|||||+. +++|++|
T Consensus 123 -VPFaiADATtL--TEAGYVGEDVE---NillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL 196 (408)
T COG1219 123 -VPFAIADATTL--TEAGYVGEDVE---NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL 196 (408)
T ss_pred -CCeeeccccch--hhccccchhHH---HHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence 48877777666 56777775433 4444444444 55999999999983 2689999
Q ss_pred HhhcccCccc--------------ccccCCceEEEEE
Q psy1694 199 IPFIDHHAVY--------------NQISFQNTIFLFL 221 (247)
Q Consensus 199 l~~Le~~~~~--------------~~~~~~~~ifI~t 221 (247)
|+.+|..... ..+|.+|..||+-
T Consensus 197 LKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcg 233 (408)
T COG1219 197 LKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICG 233 (408)
T ss_pred HHHHcCceeccCCCCCCCCCccceEEEcccceeEEec
Confidence 9999864211 1248888877765
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.9e-13 Score=129.22 Aligned_cols=131 Identities=12% Similarity=0.162 Sum_probs=84.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------ee-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------HK----- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~~----- 146 (247)
.++||+.+++.|.+.+... +.+-.+||+||+|||||++|+.+++.+++. .+. ..+|- .+
T Consensus 17 EVIGQe~Vv~~L~~aL~~g-------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe--~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGG-------RLHHAYLFTGTRGVGKTTLSRIFAKALNCE--TGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHcCcHHHHHHHHHHHhcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCc--cCCCCCCCcccHHHHHHhcCCC
Confidence 4999999999888777632 123357999999999999999999998761 111 11110 00
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.-+++......++..++.+. ..........+.|+||||+|+|+...++.|++.||+.. .+++|||+||..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe-~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-------~~v~FILaTtd~ 159 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLE-RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------PHVKFILATTDP 159 (830)
T ss_pred ceEEEecccccccHHHHHHHHH-HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-------CCeEEEEEECCh
Confidence 011111111122222222111 11111123456999999999999999999999999976 688999998864
Q ss_pred h
Q psy1694 226 G 226 (247)
Q Consensus 226 ~ 226 (247)
.
T Consensus 160 ~ 160 (830)
T PRK07003 160 Q 160 (830)
T ss_pred h
Confidence 3
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=8.9e-13 Score=127.40 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=85.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK----------- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~----------- 146 (247)
.++||+.+++.+.+.+.... .+-.++|+||+|+|||++|+.+|+.+.+. .+. ..||-..
T Consensus 17 divGQe~vv~~L~~~l~~~r-------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~--~~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR-------LHHAYLFSGTRGVGKTTIARLLAKGLNCE--TGITATPCGECDNCREIEQGRF 87 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhhhhc--cCCCCCCCCCCHHHHHHHcCCC
Confidence 49999999998888776421 23357999999999999999999998772 111 1111100
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.-++.......++..++ +.+.+...-....+.|+||||+++|+...++.||+.||+.+ .+++||++||..
T Consensus 88 ~D~ieidaas~~~VddiR~-li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------~~v~FIL~Tt~~ 159 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRE-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTDP 159 (647)
T ss_pred CCceeecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-------CCeEEEEecCCc
Confidence 011111111122333332 22222222223467899999999999999999999999976 677888887753
Q ss_pred h
Q psy1694 226 G 226 (247)
Q Consensus 226 ~ 226 (247)
.
T Consensus 160 ~ 160 (647)
T PRK07994 160 Q 160 (647)
T ss_pred c
Confidence 3
No 56
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6e-13 Score=118.56 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=90.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|-+..++.+++++.--+.++. .-+-|..+||+||||||||++|+++|++.- ..|+++.-|++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgSEl-- 221 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGSEL-- 221 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccHHH--
Confidence 477889999999999874333221 123466899999999999999999998842 47888876665
Q ss_pred CCCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCccccccc-CCceEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQIS-FQNTIF 218 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~-~~~~if 218 (247)
+..|-+.=...+++.+. ....+++||||||.+ +.++|..++++|.+ -|+.| -.|.-+
T Consensus 222 -----VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q---lDGFD~~~nvKV 293 (406)
T COG1222 222 -----VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ---LDGFDPRGNVKV 293 (406)
T ss_pred -----HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh---ccCCCCCCCeEE
Confidence 45554422223333333 344599999999876 33789999999876 34433 346778
Q ss_pred EEEeCCC
Q psy1694 219 LFLSNSG 225 (247)
Q Consensus 219 I~tSN~g 225 (247)
|+.||..
T Consensus 294 I~ATNR~ 300 (406)
T COG1222 294 IMATNRP 300 (406)
T ss_pred EEecCCc
Confidence 9999873
No 57
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.43 E-value=6.2e-13 Score=131.70 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 66 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
..++...++.|++..+|.+.+++.+.+.+......+. . ++-.++|.||||+|||++++.+++.+.. +|+.
T Consensus 310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-~-~g~~i~l~GppG~GKTtl~~~ia~~l~~--------~~~~ 379 (784)
T PRK10787 310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK-I-KGPILCLVGPPGVGKTSLGQSIAKATGR--------KYVR 379 (784)
T ss_pred cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-C-CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEE
Confidence 3567788999999999999999999887764332221 1 2235889999999999999999988533 5666
Q ss_pred eecccc------cCCCCChHHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhh----HHHHHhhcccCc---ccc-
Q psy1694 146 KFNSRI------HFPNENHVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGL----LDVIIPFIDHHA---VYN- 209 (247)
Q Consensus 146 ~~~~~l------~~~~~~~v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~----~~~Ll~~Le~~~---~~~- 209 (247)
+.++.. .++... |.+.+.+.+...+.. +..++++|||+|++++.. ++.|+++||+.+ +.+
T Consensus 380 i~~~~~~d~~~i~g~~~~----~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 380 MALGGVRDEAEIRGHRRT----YIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred EEcCCCCCHHHhccchhc----cCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecc
Confidence 664332 111111 221222233333333 345899999999999865 699999999743 222
Q ss_pred ----cccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694 210 ----QISFQNTIFLFLSNSGGTEIMNTFLELR 237 (247)
Q Consensus 210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~ 237 (247)
..|.++++||+|+|.- .|...+++.+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~ 485 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM--NIPAPLLDRM 485 (784)
T ss_pred cccccccCCceEEEEcCCCC--CCCHHHhcce
Confidence 3588999999999975 2666655543
No 58
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.6e-12 Score=124.67 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------ee------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VH------ 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~------ 145 (247)
.++||+.+++.|.+.+... +.|-.++|+||+|||||++|+++|+.+++. .+. ..|| ..
T Consensus 14 eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNCA--QGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccc--cCCCCCcccccHHHHHhhcccC
Confidence 3899999999888877631 134468999999999999999999998862 111 0111 11
Q ss_pred --eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 146 --KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 146 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.+.-+++......++..++ +.+.....-....+.|+||||++.|..+.++.|++.||+.+ .+++|||+++
T Consensus 85 ~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-------~~~~fIL~tt 156 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-------EHLIFIFATT 156 (584)
T ss_pred CCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-------CCeEEEEEeC
Confidence 1111222222223443322 22223222234567999999999999999999999999976 7889999885
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 157 e~ 158 (584)
T PRK14952 157 EP 158 (584)
T ss_pred Ch
Confidence 53
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.43 E-value=1.4e-13 Score=128.99 Aligned_cols=146 Identities=13% Similarity=0.187 Sum_probs=100.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------- 151 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------- 151 (247)
.++|.++++..+.+.+........ .+++.|++||||+++|+++++. + .+...+|+.++|+.+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~------~vli~Ge~GtGK~~~A~~ih~~--~---~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDI------TVLINGESGTGKELVARALHRH--S---PRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCC------eEEEECCCCCCHHHHHHHHHHh--C---CCCCCCeEEEeCCCCCHHHHHH
Confidence 488888899888888876543333 6899999999999999999654 4 445679999998765
Q ss_pred --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694 152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG 225 (247)
Q Consensus 152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g 225 (247)
++...+. |.+... ...+.+..+.++++|||||+.+|+.+|.+|+++|+++.+.. + ....++-+|++||..
T Consensus 204 ~lfg~~~~~---~~~~~~-~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 204 ELFGHEKGA---FTGANT-RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred HhcCCCCCC---CCCccc-CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1211111 111000 01134556778999999999999999999999999876432 1 111245588888654
Q ss_pred hHHHHHHHHHHHHcCcccccC
Q psy1694 226 GTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 226 ~~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.++.++|.+|+||
T Consensus 280 -------l~~~~~~~~f~~~L 293 (463)
T TIGR01818 280 -------LEALVRQGKFREDL 293 (463)
T ss_pred -------HHHHHHcCCcHHHH
Confidence 44566777887764
No 60
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.3e-12 Score=129.75 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=85.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------ee------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VH------ 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~------ 145 (247)
.|+||+.+++.|.+.+..-. .+-.+||+||+|||||++|++||+.|++. .+. ..+| ..
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~--~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-------INHAYLFSGPRGCGKTSSARILARSLNCV--EGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhCcc--cCCCCCCCcccHHHHHHHcCCC
Confidence 49999999998888876421 23358999999999999999999999762 111 1111 11
Q ss_pred --eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 146 --KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 146 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.+..++.......++..++ +...+...-....+.|+||||+|+|+...++.|+++||+.. .+++|||++|
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-------~~~~fIl~tt 158 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-------EHLKFIFATT 158 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-------CCeEEEEEeC
Confidence 1111121111122332222 22222111223467999999999999999999999999976 7889999986
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 159 ~~ 160 (824)
T PRK07764 159 EP 160 (824)
T ss_pred Ch
Confidence 53
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.7e-12 Score=118.45 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~ 146 (247)
.++||+.+++.+.+++... +-|-.++|+||+|+|||++|+.+|+.+.+.. .....|+-. .
T Consensus 17 ~iiGq~~~~~~l~~~~~~~-------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLG-------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hccChHHHHHHHHHHHHcC-------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHhcCCCC
Confidence 4899999999888777632 1233579999999999999999999987510 001112110 0
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+.-++.......+... .. +...+.. ..+.++||||+++|+...++.|++.+++.+ .++.||+++
T Consensus 89 d~~~~~~~~~~~v~~i----r~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-------~~~~fIl~t 156 (363)
T PRK14961 89 DLIEIDAASRTKVEEM----RE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------QHIKFILAT 156 (363)
T ss_pred ceEEecccccCCHHHH----HH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEc
Confidence 1111111111222222 21 2222222 245799999999999999999999999965 577888887
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
|.
T Consensus 157 ~~ 158 (363)
T PRK14961 157 TD 158 (363)
T ss_pred CC
Confidence 64
No 62
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.41 E-value=3.7e-13 Score=117.53 Aligned_cols=150 Identities=13% Similarity=0.183 Sum_probs=107.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
|++.+--..++.....+++.+.+.... .| +++.||+|.||+++|+.|-+.-.. .....++||.+||.++-+..
T Consensus 182 lksgiatrnp~fnrmieqierva~rsr---~p--~ll~gptgagksflarriyelk~a--rhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 182 LKSGIATRNPHFNRMIEQIERVAIRSR---AP--ILLNGPTGAGKSFLARRIYELKQA--RHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHhcccccChHHHHHHHHHHHHHhhcc---CC--eEeecCCCcchhHHHHHHHHHHHH--HHhcCCceEEEeeeeecCch
Confidence 455677788888888899988764332 33 689999999999999998443111 13346799999997764433
Q ss_pred ---------CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-ccc------cCCceEEE
Q psy1694 156 ---------ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-NQI------SFQNTIFL 219 (247)
Q Consensus 156 ---------~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-~~~------~~~~~ifI 219 (247)
++. |++.-.. -.+.+..++++++|+|||+.+..+-|.+|++.+|+.++. .+. ||. .+-
T Consensus 255 amsalfghvkga---ftga~~~-r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfq--lia 328 (531)
T COG4650 255 AMSALFGHVKGA---FTGARES-REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQ--LIA 328 (531)
T ss_pred HHHHHHhhhccc---cccchhh-hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchH--Hhh
Confidence 333 3222222 336778889999999999999999999999999997642 221 332 222
Q ss_pred EEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.| .+.+.+.+..|+|||||
T Consensus 329 gt--------vrdlrq~vaeg~fredl 347 (531)
T COG4650 329 GT--------VRDLRQLVAEGKFREDL 347 (531)
T ss_pred hh--------HHHHHHHHhccchHHHH
Confidence 23 57788888999999996
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.1e-12 Score=118.39 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=69.5
Q ss_pred hcCChHHHHH---HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAIS---HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~---~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||...+- .+.+++.. . +...++|+||||||||++|+.||...- .+|..++...
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~----~----~l~SmIl~GPPG~GKTTlA~liA~~~~--------~~f~~~sAv~----- 83 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEA----G----HLHSMILWGPPGTGKTTLARLIAGTTN--------AAFEALSAVT----- 83 (436)
T ss_pred HhcChHhhhCCCchHHHHHhc----C----CCceeEEECCCCCCHHHHHHHHHHhhC--------CceEEecccc-----
Confidence 4888876552 23333332 1 222589999999999999999998742 3677665322
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
..+...+..++..- .......+.++|+|||++++...|+.|||.+|++.+
T Consensus 84 -~gvkdlr~i~e~a~-~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i 133 (436)
T COG2256 84 -SGVKDLREIIEEAR-KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI 133 (436)
T ss_pred -ccHHHHHHHHHHHH-HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE
Confidence 11222232222221 122223468999999999999999999999999864
No 64
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.1e-12 Score=121.53 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccc------------ee
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRF------------VH 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~------------v~ 145 (247)
.++||+.+++.+.+++... . -|-.++|+||+|+|||++|+++|+.+.+. .+.. .|+ .+
T Consensus 14 dliGQe~vv~~L~~a~~~~----r---i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~--~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLN----K---IPQSILLVGASGVGKTTCARIISLCLNCS--NGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HhcCcHHHHHHHHHHHHcC----C---CCceEEEECCCCccHHHHHHHHHHHHcCc--CCCCCCCccccHHHHHHhccCC
Confidence 3999999998887776532 1 23368999999999999999999988652 1110 111 01
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+.-+++......++..++.+ +.....-....+.++||||++.|+...++.|++.||+.+ ..++|||++|.
T Consensus 85 ~Dv~eidaas~~~vddIR~Ii-e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-------~~v~fIlatte 155 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVIL-ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-------PHVKFILATTE 155 (491)
T ss_pred CCEEEEecccCCCHHHHHHHH-HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-------CCeEEEEEeCC
Confidence 111122222122233222211 111111112456899999999999999999999999976 67899999864
No 65
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=1.9e-12 Score=118.77 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc----c--CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT 140 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~----~--~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~ 140 (247)
...+.+.+.|++.++||+.|++.+..++..++... . .+..|..++|.||||+|||++|+.||+.+.
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~-------- 75 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN-------- 75 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC--------
Confidence 35678889999999999999999999987632111 1 022466899999999999999999999853
Q ss_pred Ccceeeecc
Q psy1694 141 SRFVHKFNS 149 (247)
Q Consensus 141 ~~~v~~~~~ 149 (247)
.||+.++++
T Consensus 76 ~~fi~vD~t 84 (443)
T PRK05201 76 APFIKVEAT 84 (443)
T ss_pred Chheeecch
Confidence 255655543
No 66
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.41 E-value=1.4e-12 Score=106.20 Aligned_cols=127 Identities=17% Similarity=0.309 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC--------------CCcceeee
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--------------TSRFVHKF 147 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~--------------~~~~v~~~ 147 (247)
||+.+.+.+.+.+... +-|-.++|+||+|+||+++|..+|+.+++...... ..|-+...
T Consensus 1 gq~~~~~~L~~~~~~~-------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHCT-------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHcC-------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 7888888887777642 13446899999999999999999999988321110 01111111
Q ss_pred cccccCCCCC----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 148 NSRIHFPNEN----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 148 ~~~l~~~~~~----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.+... .++..+ .+.+.+...-...++.|+||||+|+|....+++||+.||+++ .+++||++|+
T Consensus 74 -----~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-------~~~~fiL~t~ 140 (162)
T PF13177_consen 74 -----KPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-------ENTYFILITN 140 (162)
T ss_dssp -----ETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-------TTEEEEEEES
T ss_pred -----ecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-------CCEEEEEEEC
Confidence 01111 122111 111111111112356899999999999999999999999987 8999999998
Q ss_pred CChHH
Q psy1694 224 SGGTE 228 (247)
Q Consensus 224 ~g~~~ 228 (247)
.....
T Consensus 141 ~~~~i 145 (162)
T PF13177_consen 141 NPSKI 145 (162)
T ss_dssp -GGGS
T ss_pred ChHHC
Confidence 75543
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.8e-12 Score=123.30 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=84.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------e------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------H------ 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~------ 145 (247)
.++||+.+.+.+.+++.+. +.+-.++|+||+|+|||++|+++|+.+.+. .+. ..+|- .
T Consensus 16 dVIGQe~vv~~L~~aI~~g-------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~--~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 16 ELVGQNHVSRALSSALERG-------RLHHAYLFTGTRGVGKTTIARILAKCLNCE--TGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCC--cCCCCCCCccCHHHHHHhcCCC
Confidence 4999999998888877632 123368999999999999999999998651 111 01110 0
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
.+.-+++......++..++.+ ......-...++.|+||||+++|+...++.|++.||+.+ .++.||+++|..
T Consensus 87 pDviEIDAAs~~~VddIReli-~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------~~v~FILaTtd~ 158 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELL-DNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------EHVKFLFATTDP 158 (702)
T ss_pred CceEEecccccCCHHHHHHHH-HHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-------CCcEEEEEECCh
Confidence 001111111122233232211 111111223456899999999999999999999999976 677899988754
Q ss_pred h
Q psy1694 226 G 226 (247)
Q Consensus 226 ~ 226 (247)
.
T Consensus 159 ~ 159 (702)
T PRK14960 159 Q 159 (702)
T ss_pred H
Confidence 3
No 68
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.40 E-value=1.2e-12 Score=125.03 Aligned_cols=120 Identities=18% Similarity=0.280 Sum_probs=78.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc--cCCCCCcceeeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY--KDKGTSRFVHKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~--~~g~~~~~v~~~~~~l~~~~~ 156 (247)
.++||+.+++.+..++. . ..|..++|+||||||||++|+++++..-.+. ......+|+.++|....+.+.
T Consensus 66 ~iiGqs~~i~~l~~al~----~----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~ 137 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC----G----PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER 137 (531)
T ss_pred HeeCcHHHHHHHHHHHh----C----CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence 48999999988876542 1 1334679999999999999999976532100 011146899999864211111
Q ss_pred Ch----HH-----HHHHH--H-----HHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 157 NH----VS-----LYRLQ--L-----TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 157 ~~----v~-----~~~~~--l-----~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
.. ++ .|++. + ...-.+.+..+.++++||||+++|++..|++|+++|+++.
T Consensus 138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~ 203 (531)
T TIGR02902 138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRK 203 (531)
T ss_pred ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCe
Confidence 00 00 01100 0 0011245667888999999999999999999999999864
No 69
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.6e-12 Score=122.87 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=82.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC---CC-CCcc------eee--
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD---KG-TSRF------VHK-- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~---g~-~~~~------v~~-- 146 (247)
.++||+.+++.|.+.+.... .|-.++|+||+|+|||++|+++|+.+++.... +. ..|| ..+
T Consensus 17 dviGQe~vv~~L~~~l~~~r-------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR-------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 38899999988888776421 33368999999999999999999998861101 00 0111 000
Q ss_pred ----ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 147 ----FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 147 ----~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+.-+++......++..++.+ +.....-....+.|+||||+|+|+...++.|++.||+.+ .+++|||+|
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-------~~~~fIL~T 161 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-------EYLKFVLAT 161 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-------CCeEEEEEE
Confidence 11111111111222222211 111111112346899999999999999999999999976 678888888
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
|.
T Consensus 162 td 163 (618)
T PRK14951 162 TD 163 (618)
T ss_pred CC
Confidence 64
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.2e-12 Score=118.28 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=80.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC----------------CCc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSR 142 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~----------------~~~ 142 (247)
.++||+.+.+.+.+.+.. + +-|..++|+||||||||++|+++|+.+.+...... ...
T Consensus 15 divGq~~i~~~L~~~i~~----~---~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 15 EVVGQDHVKKLIINALKK----N---SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HccCcHHHHHHHHHHHHc----C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 499999998777766553 2 13446899999999999999999999865110000 001
Q ss_pred ceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 143 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 143 ~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
++.++. .....+...+. +.+.....-....+.++|+||++.+....++.|++.|++.. .+++||+++
T Consensus 88 v~el~a-----a~~~gid~iR~-i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------~~vv~Ilat 154 (472)
T PRK14962 88 VIELDA-----ASNRGIDEIRK-IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------SHVVFVLAT 154 (472)
T ss_pred cEEEeC-----cccCCHHHHHH-HHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-------CcEEEEEEe
Confidence 222221 11122232221 22222111112346899999999999999999999999865 577888887
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
|.
T Consensus 155 tn 156 (472)
T PRK14962 155 TN 156 (472)
T ss_pred CC
Confidence 73
No 71
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.9e-12 Score=123.38 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------e------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------V------H 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v------~ 145 (247)
.++||+.+++.+.+++... +-|-.++|+||+|+|||++|+++|+.+++. .+. ..+| . +
T Consensus 17 ~iiGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~--~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTG-------RVAHAFLFTGARGVGKTSTARILAKALNCE--QGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhcCC--CCCCCCCCCccHHHHHHhcCCC
Confidence 4999999998888877642 133368999999999999999999998762 111 0111 0 1
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
.+.-++.+.....++..++ +...+...-....+.|+||||+++|+.+.++.|++.||+.+ .+++|||+||..
T Consensus 88 ~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-------~~~~fIl~t~~~ 159 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-------PHVKFIFATTEP 159 (576)
T ss_pred CCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-------CCeEEEEEeCCh
Confidence 1111222222222332222 22222211223456899999999999999999999999976 688999998754
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.9e-12 Score=121.15 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee------e-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------F----- 147 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~------~----- 147 (247)
.++||+.+++.+.+++...- .|-.++|+||+|+|||++|+.+|+.+.+.. .....++-.. .
T Consensus 17 diiGq~~~v~~L~~~i~~~r-------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~-~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKT-GVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcCCCC
Confidence 48999999998887776421 233589999999999999999999987511 0001111100 0
Q ss_pred -cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 148 -NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 148 -~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.-++.......+...++ +.+.+...-....+.|+||||+++|+.+.++.|++.||+++ ..++||++|+.
T Consensus 89 dlieidaas~~gvd~ir~-ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------~~v~fIL~Ttd 158 (546)
T PRK14957 89 DLIEIDAASRTGVEETKE-ILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------EYVKFILATTD 158 (546)
T ss_pred ceEEeecccccCHHHHHH-HHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-------CCceEEEEECC
Confidence 00111111112222222 22222222233467899999999999999999999999976 67788887764
No 73
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=4.2e-12 Score=122.00 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=83.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~ 146 (247)
.++||+.+++.+.+++...- .+-.++|+||+|||||++|+.+|+.+++.. .....+|-. .
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-------VAPAYLFSGTRGVGKTTIARIFAKALNCET-APTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHhccccC-CCCCCCCcccHHHHHHhcCCCC
Confidence 38999999888887776321 223689999999999999999999987610 000111110 0
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
+..++.......++..+ .+.+.+...-....+.||||||+++|+...++.|+++||+.. .+++||++||...
T Consensus 89 Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------~~~ifILaTt~~~ 160 (624)
T PRK14959 89 DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------ARVTFVLATTEPH 160 (624)
T ss_pred ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------CCEEEEEecCChh
Confidence 11111111111222222 122222222223456899999999999999999999999865 6788999887543
No 74
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=4.5e-13 Score=124.61 Aligned_cols=145 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------- 152 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------- 152 (247)
++|.+..+..+.+.+........ .++++|++||||+++|++++. .+ .+...||+.++|+.+.
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~------~vli~ge~g~gk~~~a~~ih~--~s---~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEA------TVLIHGDSGTGKELVARAIHA--SS---ARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCC------eEEEEecCCCCHHHHHHHHHH--cC---CCCCCCeeeeeCCCCCHHHHHHH
Confidence 67777777777766654433222 578899999999999999944 35 5556799999997652
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCCh
Q psy1694 153 --FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGG 226 (247)
Q Consensus 153 --~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~ 226 (247)
+...+.+ .+. .....+.+..+.++++|||||+.||+..|.+|+++++++.+.. +. -..++.+|++|+..
T Consensus 210 lfg~~~~~~---~~~-~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~- 284 (441)
T PRK10365 210 LFGHEKGAF---TGA-DKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD- 284 (441)
T ss_pred hcCCCCCCc---CCC-CcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC-
Confidence 1111100 000 0001133566778999999999999999999999999976432 10 01134577777553
Q ss_pred HHHHHHHHHHHHcCcccccC
Q psy1694 227 TEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 227 ~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.+....|++|+|+
T Consensus 285 ------~~~~~~~~~~~~~l 298 (441)
T PRK10365 285 ------LAAEVNAGRFRQDL 298 (441)
T ss_pred ------HHHHHHcCCchHHH
Confidence 34556677777654
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=4.4e-12 Score=119.96 Aligned_cols=131 Identities=20% Similarity=0.265 Sum_probs=82.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--CC-CCcc------e-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KG-TSRF------V----- 144 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--g~-~~~~------v----- 144 (247)
.++||+.+++.+.+++.... .|-.++|+||+|||||++|+++|+.+.+.... +. ..++ .
T Consensus 22 dliGq~~vv~~L~~ai~~~r-------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 48999999998887776421 23368999999999999999999998662100 00 0010 0
Q ss_pred -eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 145 -HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 145 -~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
+.++-+++......++..++.+.. ....-....+.++||||++.++...++.|++.|++.+ .+++||+++|
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~-a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-------~~~vfI~aTt 166 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIES-AEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-------PHIIFIFATT 166 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHH-HHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-------CCEEEEEEeC
Confidence 111112221122223323222211 1111112356899999999999999999999999875 6788888875
Q ss_pred C
Q psy1694 224 S 224 (247)
Q Consensus 224 ~ 224 (247)
.
T Consensus 167 e 167 (507)
T PRK06645 167 E 167 (507)
T ss_pred C
Confidence 4
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=4.8e-12 Score=120.66 Aligned_cols=126 Identities=15% Similarity=0.232 Sum_probs=82.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK----------- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~----------- 146 (247)
.++||+.+++.+.+++...- .|-.++|+||+|+|||++|+.+|+.+.+. .+. ..|+-..
T Consensus 17 divGq~~v~~~L~~~i~~~~-------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-------LHHAYLFTGTRGVGKTTLARILAKSLNCE--TGVTATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCEEEEEECCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHhcCCC
Confidence 48999999998887776421 23357999999999999999999998761 111 1121110
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
+.-++.......+.. +...+ +... ..++.|+||||+|+|+.+.++.|++.||+.+ .+++||++
T Consensus 88 ~d~~ei~~~~~~~vd~----ir~l~-~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-------~~~~fIL~ 155 (527)
T PRK14969 88 VDLIEVDAASNTQVDA----MRELL-DNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILA 155 (527)
T ss_pred CceeEeeccccCCHHH----HHHHH-HHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-------CCEEEEEE
Confidence 001111111112222 22222 2222 2345899999999999999999999999976 67889998
Q ss_pred eCCC
Q psy1694 222 SNSG 225 (247)
Q Consensus 222 SN~g 225 (247)
||..
T Consensus 156 t~d~ 159 (527)
T PRK14969 156 TTDP 159 (527)
T ss_pred eCCh
Confidence 8653
No 77
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.37 E-value=4.9e-12 Score=119.23 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=89.9
Q ss_pred hcCChHHHHHHHHHHHHHhhh---cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQ---NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~---~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.|.|.+.+++.+.+....+.. ... -..|..+||+||||||||++|+++|+.+ + .+|+.++++.+...
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~-~-------~~~~~l~~~~l~~~- 298 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDW-Q-------LPLLRLDVGKLFGG- 298 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHh-C-------CCEEEEEhHHhccc-
Confidence 367777777766654433211 111 2355679999999999999999999984 2 48888888766433
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
+++.-...+...+ ...+....+|+||||+|++.. .++..++..|++.. .+.++|+|||
T Consensus 299 --~vGese~~l~~~f-~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------~~V~vIaTTN 368 (489)
T CHL00195 299 --IVGESESRMRQMI-RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-------SPVFVVATAN 368 (489)
T ss_pred --ccChHHHHHHHHH-HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-------CceEEEEecC
Confidence 2232222333333 233445669999999998743 13455666666532 5677888888
Q ss_pred CChHHHHHHHHHHHHcCcccccC
Q psy1694 224 SGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 224 ~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
... .+. .++++.||+.+.+
T Consensus 369 ~~~-~Ld---~allR~GRFD~~i 387 (489)
T CHL00195 369 NID-LLP---LEILRKGRFDEIF 387 (489)
T ss_pred Chh-hCC---HHHhCCCcCCeEE
Confidence 642 233 3445678876543
No 78
>KOG0991|consensus
Probab=99.36 E-value=2.2e-12 Score=109.25 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=91.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|.+..++.+.-..+. . +-| +++|.||||||||+.+.++|+.|.+ +.........|.| +...
T Consensus 28 dIVGNe~tv~rl~via~~----g---nmP-~liisGpPG~GKTTsi~~LAr~LLG---~~~ke~vLELNAS-----deRG 91 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE----G---NMP-NLIISGPPGTGKTTSILCLARELLG---DSYKEAVLELNAS-----DERG 91 (333)
T ss_pred HhhCCHHHHHHHHHHHHc----C---CCC-ceEeeCCCCCchhhHHHHHHHHHhC---hhhhhHhhhccCc-----cccc
Confidence 499999998877543332 1 123 5899999999999999999999987 3333333444433 3333
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694 159 VSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~ 230 (247)
++--+..++......+.- +...++||||+|.|..+.|.+|.+.||-+. +.+-|.+.+|...+.|.
T Consensus 92 IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-------~ttRFalaCN~s~KIiE 158 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-------NTTRFALACNQSEKIIE 158 (333)
T ss_pred cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-------ccchhhhhhcchhhhhh
Confidence 443344444444344433 555999999999999999999999999865 56679999998776654
No 79
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.36 E-value=4e-12 Score=113.19 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=84.7
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC----------------CCcc
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSRF 143 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~----------------~~~~ 143 (247)
++|++.+...+......+-.. |-.++|+||||+|||++|.++|+.+++....+. ..++
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRL------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred cccchhHHHHHHHHHHhcCCC------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 567777776666666543322 226899999999999999999999987211111 1133
Q ss_pred eeeecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
+.++.+.. .....-.++++... ..... .+..++++||+|.|.++.++++++.+|+++ .++.||
T Consensus 77 lel~~s~~-----~~~~i~~~~vr~~~-~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-------~~~~~i 143 (325)
T COG0470 77 LELNPSDL-----RKIDIIVEQVRELA-EFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-------KNTRFI 143 (325)
T ss_pred EEeccccc-----CCCcchHHHHHHHH-HHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-------CCeEEE
Confidence 33332221 11000111222222 22222 356999999999999999999999999987 899999
Q ss_pred EEeCCChHH
Q psy1694 220 FLSNSGGTE 228 (247)
Q Consensus 220 ~tSN~g~~~ 228 (247)
++||...+.
T Consensus 144 l~~n~~~~i 152 (325)
T COG0470 144 LITNDPSKI 152 (325)
T ss_pred EEcCChhhc
Confidence 999954443
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.9e-12 Score=115.44 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=82.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC-------CCCCcce-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-------KGTSRFV------- 144 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~-------g~~~~~v------- 144 (247)
.++||+.+++.+.+.+... +.|-.++|+||+|+|||++|+++|+.+.+.... +...|+-
T Consensus 17 eiiGq~~~~~~L~~~~~~~-------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hccChHHHHHHHHHHHHhC-------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 4999999998887766632 134468999999999999999999998761000 0011111
Q ss_pred -----eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 145 -----HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 145 -----~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
+.+..++.+.....++..+. +...+...-...++.++|+||+++|+...++.|++.|++.+ ..++||
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-------~~t~~I 161 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-------PHAIFI 161 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-------CCeEEE
Confidence 11111222211122222221 11111111223456899999999999999999999999865 577888
Q ss_pred EEeCC
Q psy1694 220 FLSNS 224 (247)
Q Consensus 220 ~tSN~ 224 (247)
++++.
T Consensus 162 l~t~~ 166 (397)
T PRK14955 162 FATTE 166 (397)
T ss_pred EEeCC
Confidence 88754
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=5.2e-12 Score=121.20 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=84.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------------ee
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------------HK 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------------~~ 146 (247)
.++||+.+++.+.+++...- .+-.+||+||+|||||++|+.+|+.+.+..... ..|+- +.
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-GEPCNECEICKAITNGSLM 88 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCccHHHHHHhcCCCC
Confidence 49999999998888877421 233689999999999999999999987621000 01110 01
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+..+++......+...++ +.+.+...-..+.+.|+||||+++|..+.++.|++.||+.+ .+++||++++.
T Consensus 89 dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-------~~~ifIlatt~ 158 (559)
T PRK05563 89 DVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-------AHVIFILATTE 158 (559)
T ss_pred CeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence 111111111122222221 22222222224557999999999999999999999999976 67899998764
No 82
>PHA02244 ATPase-like protein
Probab=99.35 E-value=3.7e-12 Score=115.25 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=92.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc----cccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS----RIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~----~l~~~ 154 (247)
..+|+++.+......+.+++..+. .++|.||||||||++|+++|+.+ + .||+.++.. .+.+.
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~~------PVLL~GppGtGKTtLA~aLA~~l-g-------~pfv~In~l~d~~~L~G~ 162 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNANI------PVFLKGGAGSGKNHIAEQIAEAL-D-------LDFYFMNAIMDEFELKGF 162 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCC------CEEEECCCCCCHHHHHHHHHHHh-C-------CCEEEEecChHHHhhccc
Confidence 467888888888887877776554 57999999999999999998874 2 367776631 11110
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc--cCCceEEEEEeCC------
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI--SFQNTIFLFLSNS------ 224 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~--~~~~~ifI~tSN~------ 224 (247)
.. ..+.|.. +.+... ...+++++|||++.++++++..|.++++++.+.. +. -..+..+|+|+|.
T Consensus 163 i~-~~g~~~d---gpLl~A--~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 163 ID-ANGKFHE---TPFYEA--FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred cc-ccccccc---hHHHHH--hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 00 0011211 122222 2457899999999999999999999999765322 11 2357789999997
Q ss_pred ----ChHHHHHHHHHHH
Q psy1694 225 ----GGTEIMNTFLELR 237 (247)
Q Consensus 225 ----g~~~i~~~~~~~~ 237 (247)
|.+.++..+++.+
T Consensus 237 ~~y~G~k~L~~AllDRF 253 (383)
T PHA02244 237 HIYVARNKIDGATLDRF 253 (383)
T ss_pred cccCCCcccCHHHHhhc
Confidence 3455555555543
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=9.9e-12 Score=120.27 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=84.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------ee-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------HK----- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~~----- 146 (247)
.++||+.+++.|.+++... +.|-.++|+||+|+|||++|+++|+.+.+. .+. ..++- .+
T Consensus 17 dIIGQe~vv~~L~~ai~~~-------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~--~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEG-------RLHHAYLLTGTRGVGKTTIARILAKSLNCE--NAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCCCCcccHHHHHHhccCc
Confidence 4999999999888887642 134468999999999999999999998761 111 01111 00
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.-++.......++..++.+. .....-....+.|+||||+++|+...++.|++.|++.. .+++|||+||..
T Consensus 88 ~DvlEidaAs~~gVd~IRelle-~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-------~~v~fILaTtd~ 159 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLE-NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTDP 159 (709)
T ss_pred cceEEEeccccCCHHHHHHHHH-HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-------CCcEEEEEeCCc
Confidence 001111111222332222211 11111122456899999999999999999999999865 678899998754
Q ss_pred h
Q psy1694 226 G 226 (247)
Q Consensus 226 ~ 226 (247)
.
T Consensus 160 ~ 160 (709)
T PRK08691 160 H 160 (709)
T ss_pred c
Confidence 3
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.35 E-value=8e-12 Score=112.09 Aligned_cols=129 Identities=10% Similarity=0.224 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP---- 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~---- 154 (247)
.++||+.+++.+.+.+.. +. .| .++|+||||||||++|+++++.+++ .+...+++.++++.+...
T Consensus 16 ~~~g~~~~~~~L~~~~~~----~~---~~-~lll~Gp~GtGKT~la~~~~~~l~~---~~~~~~~~~i~~~~~~~~~~~~ 84 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS----PN---LP-HLLVQGPPGSGKTAAVRALARELYG---DPWENNFTEFNVADFFDQGKKY 84 (337)
T ss_pred HhcCCHHHHHHHHHHHhC----CC---Cc-eEEEECCCCCCHHHHHHHHHHHhcC---cccccceEEechhhhhhcchhh
Confidence 378999988888776652 11 22 4789999999999999999999876 443445677776543211
Q ss_pred ---CCChHHHH----------HHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceE
Q psy1694 155 ---NENHVSLY----------RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTI 217 (247)
Q Consensus 155 ---~~~~v~~~----------~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~i 217 (247)
++.....+ .+.+...+..... ..+..+||+||++.+++..++.|++.+++.. ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------~~~~ 157 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-------RTCR 157 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------CCCe
Confidence 01110000 0111111111111 1345799999999999999999999998754 4456
Q ss_pred EEEEeCCC
Q psy1694 218 FLFLSNSG 225 (247)
Q Consensus 218 fI~tSN~g 225 (247)
||+++|..
T Consensus 158 ~Il~~~~~ 165 (337)
T PRK12402 158 FIIATRQP 165 (337)
T ss_pred EEEEeCCh
Confidence 77777643
No 85
>KOG0733|consensus
Probab=99.34 E-value=5.6e-12 Score=118.66 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=95.5
Q ss_pred cCChHHHHHHHHHHHHHhhhcccC-----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~-----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-+.....+.+.+.. ...+.- -.-|..+|||||||||||.+|+++|.++- -||+.+...++...
T Consensus 192 iGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isApeivSG 262 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAPEIVSG 262 (802)
T ss_pred ccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecchhhhcc
Confidence 66677777777766643 222210 12345789999999999999999999853 48988887665322
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChh-----------hHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACD---RAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~---~~vlilDEiek~~~~-----------~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
+.++.+..+++.+..+. .+++||||||.+.|. +...|+.-||+-..+ ..+-..+++|.
T Consensus 263 -------vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIg 334 (802)
T KOG0733|consen 263 -------VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIG 334 (802)
T ss_pred -------cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEe
Confidence 22233344444444443 399999999998762 466778888874321 12224588999
Q ss_pred EeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 221 LSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 221 tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
+||.... +. -.+++.|||.-||
T Consensus 335 ATnRPDs-lD---paLRRaGRFdrEI 356 (802)
T KOG0733|consen 335 ATNRPDS-LD---PALRRAGRFDREI 356 (802)
T ss_pred cCCCCcc-cC---HHHhcccccccee
Confidence 9998644 22 3567888887665
No 86
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.34 E-value=9.4e-12 Score=114.24 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+...|++.++||+.|++.+.-++..++.... ++..|..++|+||||||||++|+.+|+.+.
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567888999999999999999998886432111 123567899999999999999999999863
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=9.8e-12 Score=118.98 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=83.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------------ee
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------------HK 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------------~~ 146 (247)
.++||+.+++.+.+++.... .|-.++|+||+|+|||++|+.+|+.+.+..+.. ..++- +.
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~-~~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD-GDCCNSCSVCESINTNQSV 88 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCcccHHHHHHHcCCCC
Confidence 48999999988888775321 233689999999999999999999987621110 01110 00
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-++.......++..+. +.+.+...-...++.|+||||++.|..+.++.|++.||+++ ..++||++++.
T Consensus 89 DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-------~~tvfIL~Tt~ 158 (605)
T PRK05896 89 DIVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-------KHVVFIFATTE 158 (605)
T ss_pred ceEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-------CcEEEEEECCC
Confidence 111111111122332222 11222111122456899999999999999999999999976 67899998865
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.4e-11 Score=117.03 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=83.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~ 145 (247)
.++||+.+++.+.+.+... +-|-.++|+||+|+|||++|+++++.+++. .+.. .|+. +
T Consensus 15 eiiGqe~v~~~L~~~I~~g-------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~--~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-------RLAHAYLFSGLRGSGKTSSARIFARALVCE--QGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCC--CCCCCCCCcccHHHHHHhhcCC
Confidence 3999999998888877632 134468999999999999999999998762 1111 1111 1
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHH---HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISN---VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~---l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
.+.-++.......+.. +...+... -...++.|+||||+++|+.+.++.|++.||+.+ .++.||+++
T Consensus 86 ~dv~eldaas~~gId~----IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-------~~t~FIL~t 154 (535)
T PRK08451 86 IDIIEMDAASNRGIDD----IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-------SYVKFILAT 154 (535)
T ss_pred CeEEEeccccccCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-------CceEEEEEE
Confidence 1111111111112222 22222111 112456899999999999999999999999976 678899998
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 155 td~ 157 (535)
T PRK08451 155 TDP 157 (535)
T ss_pred CCh
Confidence 753
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.3e-11 Score=120.37 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--------eccc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSR 150 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--------~~~~ 150 (247)
.++||+.+++.+.+++.... -|-.+||+||+|+|||++|+++|+.+.+........||-.. +.-+
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 49999999998888886421 23368999999999999999999998772100001111000 0001
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 151 IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 151 l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.......+...+. +...+...-...++.|+||||++.|..+.++.|++.||+++ ..++||++++.
T Consensus 92 idaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-------~~tifILaTte 157 (725)
T PRK07133 92 MDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-------KHVIFILATTE 157 (725)
T ss_pred EeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-------CceEEEEEcCC
Confidence 11111111222221 22222222223456899999999999999999999999976 67888888864
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.2e-11 Score=119.14 Aligned_cols=133 Identities=15% Similarity=0.218 Sum_probs=84.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC----ccee-eec-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS----RFVH-KFN----- 148 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~----~~v~-~~~----- 148 (247)
.++||+.+++.+.+++... +.|-.++|+||+|+|||++|+++|+.+++....+... ++-. ..|
T Consensus 25 dliGq~~~v~~L~~~~~~g-------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETG-------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 4999999999988877632 1333689999999999999999999987621111001 1100 001
Q ss_pred ------ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 149 ------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 149 ------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
-++.......++..++ +.+.+...-....+.|+|+||++.|+...++.|++.||+.. .+++|||++
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-------~~~~fIl~t 169 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHVKFIFAT 169 (598)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-------CCeEEEEEe
Confidence 0111111112222221 11122111123457999999999999999999999999976 678899988
Q ss_pred CCCh
Q psy1694 223 NSGG 226 (247)
Q Consensus 223 N~g~ 226 (247)
|.-.
T Consensus 170 te~~ 173 (598)
T PRK09111 170 TEIR 173 (598)
T ss_pred CChh
Confidence 6433
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.5e-11 Score=116.49 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~ 145 (247)
.++||+.+++.+.+++... +.|-.++|+||||||||++|+++|+.+.+ .+.. .++. +
T Consensus 15 dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c---~~~~~~~cg~C~sc~~i~~~~h 84 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNC---SGEDPKPCGECESCLAVRRGAH 84 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhc---cCCCCCCCCcChhhHHHhcCCC
Confidence 3899999998888777642 13335799999999999999999999875 2210 0100 0
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+.-++.......+...++ +...+...-....+.++||||++.++...++.|++.|++.. .+++||+++|.
T Consensus 85 ~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------~~t~~Il~t~~ 155 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------EHVIFILATTE 155 (504)
T ss_pred CceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------CCEEEEEEcCC
Confidence 0111111111122222221 22222111112456899999999999999999999999965 56677777764
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.32 E-value=2.6e-11 Score=108.18 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=80.6
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++||+.+.+.+...+.. . ..|..++|+||+|+|||++|+++++.+. .+++.++++. . . +
T Consensus 23 ~~~~~~~~~~l~~~~~~----~---~~~~~lll~G~~G~GKT~la~~l~~~~~--------~~~~~i~~~~--~---~-~ 81 (316)
T PHA02544 23 CILPAADKETFKSIVKK----G---RIPNMLLHSPSPGTGKTTVAKALCNEVG--------AEVLFVNGSD--C---R-I 81 (316)
T ss_pred hcCcHHHHHHHHHHHhc----C---CCCeEEEeeCcCCCCHHHHHHHHHHHhC--------ccceEeccCc--c---c-H
Confidence 89999998887776652 1 2444677899999999999999988742 2456666544 1 1 2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 160 SLYRLQLTNWIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 160 ~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
...++.+.......-......++||||++.+ +...++.|..++++.. .++.||+|||..
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-------~~~~~Ilt~n~~ 141 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-------KNCSFIITANNK 141 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-------CCceEEEEcCCh
Confidence 2222222222211111135689999999999 6778888988899854 677899999854
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.7e-11 Score=114.88 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=82.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~ 146 (247)
.++||+.+++.+.+.++.. +-|-.++|+||+|+|||++|+.+|+.+++........++.. .
T Consensus 18 diiGq~~~v~~L~~~i~~~-------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 4999999999888877632 12336899999999999999999999876210000111111 1
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-++.+.....+...+. +...+...-...++.++|+||+++|+.+.++.|++.||+.+ .+++||+++|.
T Consensus 91 d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-------~~~~~Il~t~~ 160 (451)
T PRK06305 91 DVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-------QHVKFFLATTE 160 (451)
T ss_pred ceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-------CCceEEEEeCC
Confidence 111121111111221111 12222111123567999999999999999999999999965 56788888764
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.9e-11 Score=118.08 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=83.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-------CCCcce-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-------GTSRFV------- 144 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-------~~~~~v------- 144 (247)
.++||+.+++.+.+++... +-|-.++|+||+|||||++|+.+|+.+.+....+ ...+|-
T Consensus 17 eivGQe~i~~~L~~~i~~~-------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMD-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 4899999999887776531 1333689999999999999999999987610000 001110
Q ss_pred -----eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 145 -----HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 145 -----~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
+.+..++++.....++..+. +...+...-...++.|+|+||+++|....++.|++.||+.+ ..++||
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-------~~tv~I 161 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-------PHAIFI 161 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-------CCeEEE
Confidence 11112222211122222221 11112111223467899999999999999999999999976 678888
Q ss_pred EEeCC
Q psy1694 220 FLSNS 224 (247)
Q Consensus 220 ~tSN~ 224 (247)
++++.
T Consensus 162 L~t~~ 166 (620)
T PRK14954 162 FATTE 166 (620)
T ss_pred EEeCC
Confidence 88854
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.31 E-value=1.9e-11 Score=112.67 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=84.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+..++.+.+.+...+..+. ....|..++|+||||||||++|+++|+.+. .+|+.+.++++..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--------~~~i~v~~~~l~~ 203 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--------ATFIRVVGSELVQ 203 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--------CCEEEeehHHHhH
Confidence 488999999999888764332211 123566799999999999999999988742 3688888766532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
.. ++.....+.. +.........++|||||+|.+ ++.++..+..++.+-.- -.+..+..+|+||
T Consensus 204 ~~---~g~~~~~i~~-~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~~~~~v~VI~aT 277 (389)
T PRK03992 204 KF---IGEGARLVRE-LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG--FDPRGNVKIIAAT 277 (389)
T ss_pred hh---ccchHHHHHH-HHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc--cCCCCCEEEEEec
Confidence 11 1111111111 222223345589999999987 34566677777654210 0122477899999
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 278 n~~ 280 (389)
T PRK03992 278 NRI 280 (389)
T ss_pred CCh
Confidence 875
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2e-11 Score=118.21 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK----------- 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~----------- 146 (247)
.++||+.+.+.|.+++.... .+-.++|+||+|+|||++|+++|+.+++....+. ..++-..
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCC
Confidence 48999999998888777421 1226899999999999999999999876211110 0111100
Q ss_pred -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-++.......++..++.+ ......-..+.+.|+||||+|+|+.+.++.|++.||+.. .+++||+++|.
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-------~~tvfIL~t~~ 160 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-------PRVVFVLATTD 160 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------cCeEEEEEeCC
Confidence 00011111112222222211 111111112456899999999999999999999999976 67899998875
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=3e-11 Score=107.44 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++|++.+++.+.+.++. +. .| .++|+||+|+|||++++.+++.+++ .+...+++.++++.. ...
T Consensus 19 ~~g~~~~~~~l~~~i~~----~~---~~-~~ll~G~~G~GKt~~~~~l~~~l~~---~~~~~~~i~~~~~~~-----~~~ 82 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE----KN---MP-HLLFAGPPGTGKTTAALALARELYG---EDWRENFLELNASDE-----RGI 82 (319)
T ss_pred hcCcHHHHHHHHHHHhC----CC---CC-eEEEECCCCCCHHHHHHHHHHHHcC---CccccceEEeccccc-----cch
Confidence 78999988888777653 11 22 4699999999999999999999877 544445555543321 111
Q ss_pred HHHHHHHHHHHHHH-HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 160 SLYRLQLTNWIISN-VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 160 ~~~~~~l~~~~~~~-l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
......+....... +...+..++++||++.++...++.|+++++... .++.||+++|...
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------~~~~lIl~~~~~~ 143 (319)
T PRK00440 83 DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------QNTRFILSCNYSS 143 (319)
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------CCCeEEEEeCCcc
Confidence 11222222211110 111345799999999999999999999998754 4568888887643
No 98
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.30 E-value=4e-12 Score=119.57 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=88.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------------ 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~------------ 146 (247)
.++||+.+...|.+++....-.+ ..+|.||-|||||++||.+|+.+.+... ....||-..
T Consensus 17 evvGQe~v~~~L~nal~~~ri~h-------AYlfsG~RGvGKTt~Ari~AkalNC~~~-~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAH-------AYLFSGPRGVGKTTIARILAKALNCENG-PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchh-------hhhhcCCCCcCchhHHHHHHHHhcCCCC-CCCCcchhhhhhHhhhcCCcc
Confidence 37999999999999988532222 4799999999999999999999877210 111222211
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-+++......|+. .+.+.+.+...-....+.|++|||++.+....+++||+.|||++ .+++|||.|.-
T Consensus 89 DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-------~hV~FIlATTe 158 (515)
T COG2812 89 DVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-------SHVKFILATTE 158 (515)
T ss_pred cchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-------cCeEEEEecCC
Confidence 112222222233331 22222233223334456999999999999999999999999988 89999998753
No 99
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.7e-11 Score=116.15 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=84.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~ 145 (247)
.++||+.+++.+.+++... +.|-.++|+||+|+|||++|+++|+.+.+. .+.. .|+- +
T Consensus 17 diiGqe~iv~~L~~~i~~~-------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~--~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-------KIANAYIFSGPRGVGKTSSARAFARCLNCV--NGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhccc--cCCCCCCCccchHHHHHHcCCC
Confidence 4999999999888888642 133368999999999999999999998761 1110 1111 1
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+..++.+.....++..+. +...+...-...++.++|+||++.|+...++.|++.|++++ ..++|||+++.
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-------~~~vfI~~tte 158 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-------PYIVFIFATTE 158 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-------CCEEEEEecCC
Confidence 1111222221122222222 11111111123567999999999999999999999999976 68899998854
No 100
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=2.5e-11 Score=108.77 Aligned_cols=128 Identities=14% Similarity=0.251 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc-----eeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF-----VHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~-----v~~~~~~l~~ 153 (247)
.++||+.+++.+.+++.... -|-.++|+||+|+||+++|.++|+.+++ ....+.+ ...+.+.+++
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc---~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-------IAPAYLFAGPEGVGRKLAALCFIEGLLS---QGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHHcC---CCCCCCcHhcccccCCCCCEEE
Confidence 59999999999998887421 2337899999999999999999999987 3211111 1111122211
Q ss_pred CCCC-----h-H-----H----------H-HHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 154 PNEN-----H-V-----S----------L-YRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 154 ~~~~-----~-v-----~----------~-~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
-.|. . + + . ..+++ ..+...+. ..++.|+|||++|+|++..+++|++.|||++
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp- 152 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG- 152 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-
Confidence 1110 0 0 0 0 00111 12223333 2456999999999999999999999999963
Q ss_pred cccccCCceEEEEEeCCC
Q psy1694 208 YNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 208 ~~~~~~~~~ifI~tSN~g 225 (247)
+++||++|+..
T Consensus 153 -------~~~fILi~~~~ 163 (314)
T PRK07399 153 -------NGTLILIAPSP 163 (314)
T ss_pred -------CCeEEEEECCh
Confidence 56888888743
No 101
>KOG0733|consensus
Probab=99.28 E-value=2.7e-11 Score=114.17 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=83.2
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-++..+..++..++..-...+. .-.-|..+|++||||||||++|+++|+.. ..+|+.+--+++
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa--------g~NFisVKGPEL--- 581 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA--------GANFISVKGPEL--- 581 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc--------cCceEeecCHHH---
Confidence 34456566566555543211111 02346689999999999999999999882 248888865554
Q ss_pred CCChHHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceE-EE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTI-FL 219 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~---~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~i-fI 219 (247)
...|.++.+..++..+.++ ..+|+||||+|.|-| -+.+.||.-||.- +-|+.+ +|
T Consensus 582 ----lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl------~~R~gV~vi 651 (802)
T KOG0733|consen 582 ----LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL------EERRGVYVI 651 (802)
T ss_pred ----HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc------ccccceEEE
Confidence 4556666666666666654 349999999999865 3678888777753 224444 45
Q ss_pred EEeCCChHHHH
Q psy1694 220 FLSNSGGTEIM 230 (247)
Q Consensus 220 ~tSN~g~~~i~ 230 (247)
..||. ++.|.
T Consensus 652 aATNR-PDiID 661 (802)
T KOG0733|consen 652 AATNR-PDIID 661 (802)
T ss_pred eecCC-Ccccc
Confidence 55565 34343
No 102
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.28 E-value=3.8e-11 Score=113.48 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=86.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc--CCCCCcceeeecccc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK--DKGTSRFVHKFNSRI 151 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~--~g~~~~~v~~~~~~l 151 (247)
.+.|.+..++.+.+++......+. .-..|..++|+||||||||++|+++|+.+..... .+....|+.+..+++
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL 262 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL 262 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh
Confidence 378899999999988864221110 0234557999999999999999999999744100 011223333333332
Q ss_pred cCCCCChHHHHHHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCce
Q psy1694 152 HFPNENHVSLYRLQLTNWII---SNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNT 216 (247)
Q Consensus 152 ~~~~~~~v~~~~~~l~~~~~---~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ 216 (247)
.. .+++.....+...+. .........++||||+|.+-. .+.+.|+..|+.-. +..+.
T Consensus 263 l~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~-----~~~~V 334 (512)
T TIGR03689 263 LN---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE-----SLDNV 334 (512)
T ss_pred cc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----cCCce
Confidence 11 122222222222221 111223458999999998732 13456666666421 23578
Q ss_pred EEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 217 IFLFLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 217 ifI~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
++|++||.. +.|.. ..++.||+..
T Consensus 335 iVI~ATN~~-d~LDp---ALlRpGRfD~ 358 (512)
T TIGR03689 335 IVIGASNRE-DMIDP---AILRPGRLDV 358 (512)
T ss_pred EEEeccCCh-hhCCH---hhcCccccce
Confidence 999999983 33332 2345566643
No 103
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3.1e-11 Score=114.00 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=82.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee-eecc--------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH-KFNS-------- 149 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~-~~~~-------- 149 (247)
.++||+.+++.+.+++.... -+-.++|+||+|+|||++|+.+|+.+.+..... ..|+-. .+|.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~-~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE-GEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC-CCCCCccHHHHHHhcCCCC
Confidence 48999999998888886421 222578999999999999999999987511011 112111 1111
Q ss_pred ---cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 150 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 150 ---~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+++.+....++..+ .+.+.+...-....+.|+|+||+++|+.+.++.|++.|++.+ ..++||+++|.
T Consensus 89 d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-------~~~v~Il~tt~ 158 (486)
T PRK14953 89 DLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-------PRTIFILCTTE 158 (486)
T ss_pred cEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEECC
Confidence 11111112222111 122222111112345899999999999999999999999975 56788888754
No 104
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.4e-11 Score=115.82 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=83.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc------c------eee
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR------F------VHK 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~------~------v~~ 146 (247)
.++||+.+++.+.+.+... .-|-.++|+||+|+|||++|+++|+.+.+........+ | .+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~-------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATN-------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 4999999999888887642 13336899999999999999999999875100000000 0 111
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+..++++.....+.. +...+ ..+. ..++.++||||++.|+.+.++.|+++||+.+ .+++||+++
T Consensus 91 n~~~ld~~~~~~vd~----Ir~li-~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-------~~tifIL~t 158 (614)
T PRK14971 91 NIHELDAASNNSVDD----IRNLI-EQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-------SYAIFILAT 158 (614)
T ss_pred ceEEecccccCCHHH----HHHHH-HHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------CCeEEEEEe
Confidence 222222221222222 22222 1122 2356899999999999999999999999976 678999988
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
+.
T Consensus 159 t~ 160 (614)
T PRK14971 159 TE 160 (614)
T ss_pred CC
Confidence 74
No 105
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.26 E-value=3.6e-11 Score=111.63 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=70.2
Q ss_pred hcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||+..+.. +.+.+.. . ++-.++|+||||||||++|+.+++.+.. +|+.+++...
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~----~----~~~~ilL~GppGtGKTtLA~~ia~~~~~--------~~~~l~a~~~---- 72 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA----G----RLSSMILWGPPGTGKTTLARIIAGATDA--------PFEALSAVTS---- 72 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc----C----CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecccc----
Confidence 38999988765 5555532 1 2226789999999999999999887432 5666665321
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
.+...+..+. ..........+.++||||+++++...++.|++.++++.
T Consensus 73 --~~~~ir~ii~-~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~ 120 (413)
T PRK13342 73 --GVKDLREVIE-EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT 120 (413)
T ss_pred --cHHHHHHHHH-HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc
Confidence 1121222111 11111222356899999999999999999999999854
No 106
>PRK12377 putative replication protein; Provisional
Probab=99.26 E-value=1.1e-10 Score=101.16 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 161 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~ 161 (247)
||..+.....+.+..+.... ..++|+||||||||++|.+|++.+.. .+... +.+..+++..... ..
T Consensus 82 ~~~~a~~~a~~~a~~~~~~~------~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v--~~i~~~~l~~~l~---~~ 147 (248)
T PRK12377 82 GQRYALSQAKSIADELMTGC------TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSV--IVVTVPDVMSRLH---ES 147 (248)
T ss_pred hHHHHHHHHHHHHHHHHhcC------CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCe--EEEEHHHHHHHHH---HH
Confidence 34444444444444443222 26899999999999999999999876 44322 2333322210000 00
Q ss_pred HHH-HHHHHHHHHHHhCCCeEEEEeCC--CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 162 YRL-QLTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 162 ~~~-~l~~~~~~~l~~~~~~vlilDEi--ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
|.. .....+...+ ....+|||||+ +...+..++.|.++++.+.- .+..+|+|||.+.+++.+.
T Consensus 148 ~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~------~~~ptiitSNl~~~~l~~~ 213 (248)
T PRK12377 148 YDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTA------SMRSVGMLTNLNHEAMSTL 213 (248)
T ss_pred HhccchHHHHHHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHh------cCCCEEEEcCCCHHHHHHH
Confidence 100 0011122223 33489999999 55567888999999998531 2457899999998886653
No 107
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=6.9e-11 Score=105.76 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=83.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+.+.+... +-|-.++|+||.|+||+++|+.+|+.+++....+....+..+... .+. .-.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~-~i~ 74 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKK-SIG 74 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCC-CCC
Confidence 4889999999888877531 134468999999999999999999998762111111122222110 111 111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
++..++ +...+...-...++.|+|+||+|+|..+.+++|++.||+++ .+++||++|+.
T Consensus 75 v~~ir~-~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-------~~t~~il~~~~ 132 (313)
T PRK05564 75 VDDIRN-IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-------KGVFIILLCEN 132 (313)
T ss_pred HHHHHH-HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence 221111 11111111123456899999999999999999999999977 78889988864
No 108
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.25 E-value=5.5e-11 Score=105.61 Aligned_cols=105 Identities=14% Similarity=0.236 Sum_probs=70.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+..++.+...+......+ ..|-.++|+||||||||++|+.+|+.+.. ++.....+.. ..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~---~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--------~~~~~~~~~~-----~~ 68 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQ---EALDHLLLYGPPGLGKTTLAHIIANEMGV--------NLKITSGPAL-----EK 68 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC--------CEEEeccchh-----cC
Confidence 48999999999888776543332 24446899999999999999999988532 2222221111 01
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
.+ .+.+.+. . .....++||||++.+++..++.|+..+++..
T Consensus 69 ~~----~l~~~l~-~--~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 69 PG----DLAAILT-N--LEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred ch----hHHHHHH-h--cccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 11 1122221 1 1245899999999999999999999988754
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.25 E-value=6.9e-11 Score=106.95 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------------H 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------------~ 145 (247)
.++||+.+++.+.+.+... ..|-.++|+||+|+|||++|+.+++.+.+. .+. ..++- +
T Consensus 15 ~iig~~~~~~~l~~~~~~~-------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~--~~~~~~~c~~c~~c~~~~~~~~ 85 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-------RIAHAYLFSGPRGTGKTSIARIFAKALNCQ--NGPDGEPCNECESCKEINSGSS 85 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHhcCCC
Confidence 4899999999888877531 133468999999999999999999998751 110 01110 0
Q ss_pred eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+..++.......+...+. +.+.+...-...++.++++||+|.++...++.|++.+++.+ .+++||+++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-------~~~~lIl~~~~ 156 (355)
T TIGR02397 86 LDVIEIDAASNNGVDDIRE-ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-------EHVVFILATTE 156 (355)
T ss_pred CCEEEeeccccCCHHHHHH-HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-------cceeEEEEeCC
Confidence 0111111111111221221 11112111112345899999999999999999999998865 57788888865
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.7e-11 Score=104.37 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=81.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 157 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~ 157 (247)
..+||+.+++.+.=.++...... .++ .+||+||||.|||++|..+|+.+-. ++... .+|.-.
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--------n~k~t-----sGp~le 89 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANELGV--------NLKIT-----SGPALE 89 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHhcC--------CeEec-----cccccc
Confidence 48999999998877776543222 233 4899999999999999999999643 22111 122211
Q ss_pred hHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChhhHHHHHhhcccCccc--cc---------ccCCceEEEEEeCCC
Q psy1694 158 HVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG 225 (247)
Q Consensus 158 ~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~--~~---------~~~~~~ifI~tSN~g 225 (247)
..+ .+. ..+.. .+++|+|+|||+++++.+-..|.++||...+- .+ .|.....+|..|...
T Consensus 90 K~g----Dla----aiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 90 KPG----DLA----AILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred Chh----hHH----HHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 112 122 22332 45799999999999999999999999997632 11 266666667665543
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=6.1e-11 Score=114.59 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~ 146 (247)
.++||+.+++.+.+.+...- .+-.++|+||+|+|||++|+.+++.+.+........+|-. .
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 49999999998887776421 2335799999999999999999999875110111111100 0
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.-++.......++..++ +.+.+...-....+.|+||||+++|+.+.++.|++.|++.. .+++||++++.
T Consensus 90 d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------~~tv~Il~t~~ 159 (585)
T PRK14950 90 DVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHAIFILATTE 159 (585)
T ss_pred eEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------CCeEEEEEeCC
Confidence 000111101111222211 11122111112456999999999999999999999999965 57788888764
No 112
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.2e-10 Score=105.96 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=83.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-----CCCCCcc-eeeec----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRF-VHKFN---- 148 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-----~g~~~~~-v~~~~---- 148 (247)
.++||+.+.+.+..++.... .|-.++|+||+|+|||++|+.+|+.+.+... .+...++ ..-.|
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 49999999999988887431 3336899999999999999999999877210 0000010 00000
Q ss_pred ----cc---ccCC--CC-----C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccccc
Q psy1694 149 ----SR---IHFP--NE-----N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS 212 (247)
Q Consensus 149 ----~~---l~~~--~~-----~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~ 212 (247)
+. +..+ .+ . .++..+ .+.+.+...-....+.|+||||+|+|++..++.|++.||+.+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp------ 169 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP------ 169 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC------
Confidence 00 1001 11 0 112111 122222111123456899999999999999999999999976
Q ss_pred CCceEEEEEeCCC
Q psy1694 213 FQNTIFLFLSNSG 225 (247)
Q Consensus 213 ~~~~ifI~tSN~g 225 (247)
.+++||++|+..
T Consensus 170 -~~~~fiLit~~~ 181 (351)
T PRK09112 170 -ARALFILISHSS 181 (351)
T ss_pred -CCceEEEEECCh
Confidence 678888888764
No 113
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=2e-11 Score=110.04 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~ 148 (247)
...++..+...++|++.++..+..++. ... .++|.||||||||++|+.+|+.+- .+|+++.|
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~---~~~-------~vll~G~PG~gKT~la~~lA~~l~--------~~~~~i~~ 76 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALL---AGG-------HVLLEGPPGVGKTLLARALARALG--------LPFVRIQC 76 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHH---cCC-------CEEEECCCCccHHHHHHHHHHHhC--------CCeEEEec
Confidence 344556666678998877766655443 222 469999999999999999999853 37888887
Q ss_pred ccccCCCCChHHHH--HHHHH-H----HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccC-----Cce
Q psy1694 149 SRIHFPNENHVSLY--RLQLT-N----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISF-----QNT 216 (247)
Q Consensus 149 ~~l~~~~~~~v~~~--~~~l~-~----~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~-----~~~ 216 (247)
..-..|. ..++.+ ..... . ...+-+-.+..+++++|||++.++.+|+.|+++|++++++..-.. ...
T Consensus 77 t~~l~p~-d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 77 TPDLLPS-DLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred CCCCCHH-HhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 4321111 111111 11100 0 011111111114999999999999999999999999876543222 355
Q ss_pred EEEEEeCC----ChHHHHHHHHHH
Q psy1694 217 IFLFLSNS----GGTEIMNTFLEL 236 (247)
Q Consensus 217 ifI~tSN~----g~~~i~~~~~~~ 236 (247)
++|.|+|. |...+++.+++.
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ldR 179 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLDR 179 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHhh
Confidence 67777784 444445544443
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.1e-10 Score=106.50 Aligned_cols=128 Identities=17% Similarity=0.208 Sum_probs=80.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce--eeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV--HKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v--~~~~~~l~~~~~ 156 (247)
.++||+.+++.+.+.++.. ..|.+++|+||+|+|||++|+.+++.+.+ .+...+.. ..+.-++.....
T Consensus 18 ~iig~~~~~~~l~~~i~~~-------~~~~~~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~~~~~~~~~l~~~~~ 87 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-------HLAQALLFCGPRGVGKTTCARILARKINQ---PGYDDPNEDFSFNIFELDAASN 87 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCCcceEEeccccC
Confidence 4899999998888777641 13447899999999999999999999876 33211110 111111111111
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 157 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 157 ~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
..+...+.. .......-...++.+|++||++.+....++.|++.+++.+ ..++||+++|.
T Consensus 88 ~~~~~i~~l-~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------~~~~~Il~~~~ 147 (367)
T PRK14970 88 NSVDDIRNL-IDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------AHAIFILATTE 147 (367)
T ss_pred CCHHHHHHH-HHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-------CceEEEEEeCC
Confidence 111211111 1111000112345899999999999999999999998854 56788888764
No 115
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.1e-10 Score=106.52 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=83.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-----c----c-eeeec
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-----R----F-VHKFN 148 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-----~----~-v~~~~ 148 (247)
.++||+.+++.+.+++.+.. .|-.++|+||+|+||+++|..+|+.+++....+... + + ..-.|
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 49999999999988877521 344689999999999999999999998721111000 0 0 00000
Q ss_pred --------ccccC--C---CCCh--HHHH-HHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694 149 --------SRIHF--P---NENH--VSLY-RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 149 --------~~l~~--~---~~~~--v~~~-~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~ 208 (247)
+.++. + +.+. -... .+++. .+...+. ...+.|++|||+|.|++..++.|++.+++.+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-- 169 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-- 169 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC--
Confidence 11110 1 1110 0000 11111 1212222 2345899999999999999999999999976
Q ss_pred ccccCCceEEEEEeCCCh
Q psy1694 209 NQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 209 ~~~~~~~~ifI~tSN~g~ 226 (247)
.+++||++|+...
T Consensus 170 -----~~~~~IL~t~~~~ 182 (365)
T PRK07471 170 -----ARSLFLLVSHAPA 182 (365)
T ss_pred -----CCeEEEEEECCch
Confidence 6778888887654
No 116
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=5.9e-11 Score=107.07 Aligned_cols=128 Identities=14% Similarity=0.326 Sum_probs=82.0
Q ss_pred hcCC-hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc------eeee---c
Q psy1694 79 HVHG-QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF------VHKF---N 148 (247)
Q Consensus 79 ~l~G-q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~------v~~~---~ 148 (247)
.|.| |+.+++.+.+.+... +-|-.++|+||+|+||+++|+.+|+.+++....+ ..++ ..+. .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~-~~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG-VEPCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCcCHHHHHHhcCCC
Confidence 4667 888888888777531 1344689999999999999999999988721000 0110 0000 0
Q ss_pred ccccC--CCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 149 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 149 ~~l~~--~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+.+.+ +....++ .+++.+.. ..+. ..++.|+||||+|+|+...+++|++.|||++ .+++||++|
T Consensus 78 pD~~~i~~~~~~i~--id~ir~l~-~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-------~~~~~Il~t 147 (329)
T PRK08058 78 PDVHLVAPDGQSIK--KDQIRYLK-EEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-------GGTTAILLT 147 (329)
T ss_pred CCEEEeccccccCC--HHHHHHHH-HHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-------CCceEEEEe
Confidence 11111 1111111 11222222 2222 3456899999999999999999999999987 788999998
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
+.
T Consensus 148 ~~ 149 (329)
T PRK08058 148 EN 149 (329)
T ss_pred CC
Confidence 74
No 117
>KOG2028|consensus
Probab=99.23 E-value=2.9e-11 Score=108.24 Aligned_cols=113 Identities=22% Similarity=0.337 Sum_probs=70.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
..+||+..+.+ ...++..+..+. -| .++|+||||||||++|+.|+..--. ..-.||..... ...
T Consensus 139 dyvGQ~hlv~q-~gllrs~ieq~~---ip-SmIlWGppG~GKTtlArlia~tsk~-----~SyrfvelSAt------~a~ 202 (554)
T KOG2028|consen 139 DYVGQSHLVGQ-DGLLRSLIEQNR---IP-SMILWGPPGTGKTTLARLIASTSKK-----HSYRFVELSAT------NAK 202 (554)
T ss_pred HhcchhhhcCc-chHHHHHHHcCC---CC-ceEEecCCCCchHHHHHHHHhhcCC-----CceEEEEEecc------ccc
Confidence 37788776654 333444443332 33 4788999999999999999887222 11124433321 111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
+...++.+++.-........+.|+|+|||+++....|+.++|.+|.+.+
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I 251 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI 251 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce
Confidence 1222333333222233344569999999999999999999999999864
No 118
>KOG0745|consensus
Probab=99.22 E-value=4.6e-11 Score=108.79 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHHh---------------hh---c-c------------------cC-----
Q psy1694 66 SSNVRVLEEQLKQHVHGQELAISHICGALKNH---------------FQ---N-R------------------YH----- 103 (247)
Q Consensus 66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~---------------~~---~-~------------------~~----- 103 (247)
.+..+.+-+.|++.++||+.|+..|.=++.++ +. . . .+
T Consensus 133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~ 212 (564)
T KOG0745|consen 133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA 212 (564)
T ss_pred CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence 34567889999999999999987655443321 00 0 0 00
Q ss_pred ---C----C---CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH---
Q psy1694 104 ---N----T---KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI--- 170 (247)
Q Consensus 104 ---~----~---kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~--- 170 (247)
+ + ...++++.||+|+|||++|+.||+.+- .||+-.+|.++ ...+++++-.+.....+
T Consensus 213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ld--------VPfaIcDcTtL--TQAGYVGeDVEsvi~KLl~~ 282 (564)
T KOG0745|consen 213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLD--------VPFAICDCTTL--TQAGYVGEDVESVIQKLLQE 282 (564)
T ss_pred ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhC--------CCeEEecccch--hhcccccccHHHHHHHHHHH
Confidence 0 0 012689999999999999999999863 48988889887 45566654333222221
Q ss_pred -HHHHHhCCCeEEEEeCCCCCC--------------hhhHHHHHhhcccCcccc--------------cccCCceEEEEE
Q psy1694 171 -ISNVTACDRAIFIFDEVDKFP--------------KGLLDVIIPFIDHHAVYN--------------QISFQNTIFLFL 221 (247)
Q Consensus 171 -~~~l~~~~~~vlilDEiek~~--------------~~~~~~Ll~~Le~~~~~~--------------~~~~~~~ifI~t 221 (247)
...+++|..+++||||+||+. +++|..||++||..-+.. .+|..+..||..
T Consensus 283 A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFias 362 (564)
T KOG0745|consen 283 AEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIAS 362 (564)
T ss_pred ccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEec
Confidence 134566778999999999985 368999999998643211 147777777765
No 119
>KOG0738|consensus
Probab=99.22 E-value=7.1e-11 Score=106.36 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=93.2
Q ss_pred hcCChHHHHHHHHHHHHH------hhhcccCCCCC-eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694 79 HVHGQELAISHICGALKN------HFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 151 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~------~~~~~~~~~kp-l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l 151 (247)
.|.|-+.|++.|.+++-- +..+- .+| ..+|++||||||||++|+++|-.. + ..|+.+..+.+
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPGTGKTlLAKAvATEc-~-------tTFFNVSsstl 281 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPGTGKTLLAKAVATEC-G-------TTFFNVSSSTL 281 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCCCcHHHHHHHHHHhh-c-------CeEEEechhhh
Confidence 488999999999988853 22222 244 468999999999999999998772 2 36766665554
Q ss_pred cCCCCChHHHHHHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCce
Q psy1694 152 HFPNENHVSLYRLQLTNWII---SNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNT 216 (247)
Q Consensus 152 ~~~~~~~v~~~~~~l~~~~~---~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ 216 (247)
+..|++..+..++ +.-+....++|||||||.+-. -+-+-||..||.- ....+-++.
T Consensus 282 -------tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~--~~t~e~~k~ 352 (491)
T KOG0738|consen 282 -------TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV--QGTLENSKV 352 (491)
T ss_pred -------hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc--cccccccee
Confidence 3446554444333 333334459999999988733 3456666666641 222244688
Q ss_pred EEEEEeCCChHHHHHHHHHHHHc
Q psy1694 217 IFLFLSNSGGTEIMNTFLELRKS 239 (247)
Q Consensus 217 ifI~tSN~g~~~i~~~~~~~~~~ 239 (247)
+|++.+..-+=+|.+.+++.+++
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEK 375 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEK 375 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhh
Confidence 88888766677777777666553
No 120
>PRK08116 hypothetical protein; Validated
Probab=99.22 E-value=5.8e-11 Score=104.18 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=70.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH-------HHHHHHHHHhCCC
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL-------TNWIISNVTACDR 179 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l-------~~~~~~~l~~~~~ 179 (247)
+..++|+|++|||||++|.++++.+.. .+ .+.+.++.+++. ..++... ...+...+. ..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~---~~--~~v~~~~~~~ll-------~~i~~~~~~~~~~~~~~~~~~l~--~~ 179 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE---KG--VPVIFVNFPQLL-------NRIKSTYKSSGKEDENEIIRSLV--NA 179 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEHHHHH-------HHHHHHHhccccccHHHHHHHhc--CC
Confidence 346899999999999999999999865 43 344445443321 1111100 111222333 34
Q ss_pred eEEEEeCC--CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 180 AIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 180 ~vlilDEi--ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
++|+|||+ ++..+..+..|..+++.+.- ++..+|+|||..++++.+.
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~------~~~~~IiTsN~~~~eL~~~ 228 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYR------KGLPTIVTTNLSLEELKNQ 228 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHH
Confidence 79999999 56677888999999887421 3456999999999887653
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.21 E-value=7.6e-11 Score=107.66 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=80.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+..++.+.+.+...+..+. ....|..++|+||||||||++|+++|+.+.. +|+.+..+.+.
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--------~~~~v~~~~l~- 193 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSELV- 193 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--------CEEecchHHHH-
Confidence 589999999999988864332211 1234667999999999999999999887532 56666544331
Q ss_pred CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
..|.+.....+...+ .....++|||||+|.+. +.++..+..++.+-.-. .+..+..+|
T Consensus 194 ------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~~~~~v~vI 265 (364)
T TIGR01242 194 ------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF--DPRGNVKVI 265 (364)
T ss_pred ------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC--CCCCCEEEE
Confidence 112221112222222 33345799999999873 34556666665441100 112477899
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
+|||..
T Consensus 266 ~ttn~~ 271 (364)
T TIGR01242 266 AATNRP 271 (364)
T ss_pred EecCCh
Confidence 999864
No 122
>KOG0736|consensus
Probab=99.21 E-value=8.3e-11 Score=113.25 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=68.8
Q ss_pred hcCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|-+.++..+.+.++--+. +.. -+|...++|+||||||||++|+++|-. ++ -+|+.+--++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssg-lrkRSGILLYGPPGTGKTLlAKAVATE-cs-------L~FlSVKGPE--- 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSG-LRKRSGILLYGPPGTGKTLLAKAVATE-CS-------LNFLSVKGPE--- 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhcc-ccccceeEEECCCCCchHHHHHHHHhh-ce-------eeEEeecCHH---
Confidence 366788999999998875222 222 334457999999999999999999887 33 2565554333
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCCCh
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK 192 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~---~~~vlilDEiek~~~ 192 (247)
....|.++.+.-+++.++++ ..+|+||||+|.+.|
T Consensus 741 ----LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 741 ----LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred ----HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 34556655555555555554 459999999999977
No 123
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.21 E-value=9.5e-11 Score=116.03 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=84.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|++.+++.+.+.+.-....+. ....|..++|+||||||||++|+++|..+- .+|+.+..+++..
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--------~~fi~v~~~~l~~ 525 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--------ANFIAVRGPEILS 525 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------CCEEEEehHHHhh
Confidence 378999999988887763222111 123466799999999999999999988742 4788888766533
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
. +++.-...+...+ ........+++||||+|.+.+ .+.+.|+..|+.-. +.++.++|+|
T Consensus 526 ~---~vGese~~i~~~f-~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~v~vI~a 596 (733)
T TIGR01243 526 K---WVGESEKAIREIF-RKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----ELSNVVVIAA 596 (733)
T ss_pred c---ccCcHHHHHHHHH-HHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----CCCCEEEEEe
Confidence 2 2221222222222 233445569999999998732 24566666666411 2367899999
Q ss_pred eCCC
Q psy1694 222 SNSG 225 (247)
Q Consensus 222 SN~g 225 (247)
||..
T Consensus 597 Tn~~ 600 (733)
T TIGR01243 597 TNRP 600 (733)
T ss_pred CCCh
Confidence 9874
No 124
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.21 E-value=1.6e-11 Score=96.64 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=63.5
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH------HHHHHHHHHHhCCCeEEE
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ------LTNWIISNVTACDRAIFI 183 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~------l~~~~~~~l~~~~~~vli 183 (247)
++|.||||||||++|+.+|+.+ . .+++.+.++.... ....++.|.-. ..+.+..... .+.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~-------~~~~~i~~~~~~~-~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~ 70 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-G-------RPVIRINCSSDTT-EEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILV 70 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-T-------CEEEEEE-TTTST-HHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-h-------cceEEEEeccccc-cccceeeeeeccccccccccccccccc--ceeEEE
Confidence 6899999999999999999986 3 2555555432100 00000000000 0000000011 458999
Q ss_pred EeCCCCCChhhHHHHHhhcccCccc--cc---ccCC-------ceEEEEEeCCCh
Q psy1694 184 FDEVDKFPKGLLDVIIPFIDHHAVY--NQ---ISFQ-------NTIFLFLSNSGG 226 (247)
Q Consensus 184 lDEiek~~~~~~~~Ll~~Le~~~~~--~~---~~~~-------~~ifI~tSN~g~ 226 (247)
|||++++++.+++.|++++++++.. .. .... +..+|+|+|...
T Consensus 71 lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 71 LDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp ESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred ECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 9999999999999999999998654 11 1222 389999999877
No 125
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.20 E-value=5.8e-11 Score=115.18 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=77.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC----CCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----GTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g----~~~~~v~~~~~~l~~~ 154 (247)
.++||+.++..+.+.+.. + .|..++|+||||||||++|+.+++..... .+ ...+|+.+++..+...
T Consensus 155 ~iiGqs~~~~~l~~~ia~----~----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~--~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS----P----FPQHIILYGPPGVGKTTAARLALEEAKKL--KHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred hceeCcHHHHHHHHHHhc----C----CCCeEEEECCCCCCHHHHHHHHHHhhhhc--cCCcccCCCCeEEEechhccCC
Confidence 489999999887655521 1 23368999999999999999997764221 11 2457899988665321
Q ss_pred CCC----hHHH-----HHHH---HH-----HHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 155 NEN----HVSL-----YRLQ---LT-----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 155 ~~~----~v~~-----~~~~---l~-----~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
... ..+. +++. +. ....+.+....++++||||++.|++..|+.|+++|++++
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR 293 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence 100 0000 1110 00 011123445667999999999999999999999999875
No 126
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.20 E-value=2.6e-10 Score=103.05 Aligned_cols=133 Identities=10% Similarity=0.114 Sum_probs=82.7
Q ss_pred HhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH
Q psy1694 96 NHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175 (247)
Q Consensus 96 ~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~ 175 (247)
+++..+. -+.|+.++|+||||||||++|+++|+.+- .+|+.++.+++.....+. -...+...+..+-.
T Consensus 138 n~l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg--------~~~i~vsa~eL~sk~vGE---sEk~IR~~F~~A~~ 205 (413)
T PLN00020 138 NFLALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMG--------IEPIVMSAGELESENAGE---PGKLIRQRYREAAD 205 (413)
T ss_pred hhhhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcC--------CCeEEEEHHHhhcCcCCc---HHHHHHHHHHHHHH
Confidence 3443333 46788999999999999999999999842 378999888875433322 22333333332221
Q ss_pred ----hCCCeEEEEeCCCCCChh-----------h-HHHHHhhcccCccc--c-----cccCCceEEEEEeCCChHHHHHH
Q psy1694 176 ----ACDRAIFIFDEVDKFPKG-----------L-LDVIIPFIDHHAVY--N-----QISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 176 ----~~~~~vlilDEiek~~~~-----------~-~~~Ll~~Le~~~~~--~-----~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
+...++|||||||.+-+. + ...|+..+|....+ + ....+++.+|.|+|.... |
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-L--- 281 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-L--- 281 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-C---
Confidence 123489999999977541 1 25677777753211 1 123467888889886432 1
Q ss_pred HHHHHHcCcccc
Q psy1694 233 FLELRKSGERYI 244 (247)
Q Consensus 233 ~~~~~~~g~~Re 244 (247)
--.+++.||+..
T Consensus 282 DpALlRpGRfDk 293 (413)
T PLN00020 282 YAPLIRDGRMEK 293 (413)
T ss_pred CHhHcCCCCCCc
Confidence 124456666644
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=107.25 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=88.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+..++.+.+.+.-.+..+. ....|..++|+||||||||++|+++|+.+. .+|+.+..+.+..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--------~~fi~i~~s~l~~ 217 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--------ATFIRVVGSEFVQ 217 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------CCEEEEehHHHHH
Confidence 488999999999988864332221 123566899999999999999999998743 3677776544311
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 221 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~t 221 (247)
.+++.-...+...+ ........+++||||+|.+. ..++..+..++..- ++. ...+..+|++
T Consensus 218 ---k~~ge~~~~lr~lf-~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l---d~~~~~~~v~VI~a 290 (398)
T PTZ00454 218 ---KYLGEGPRMVRDVF-RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM---DGFDQTTNVKVIMA 290 (398)
T ss_pred ---HhcchhHHHHHHHH-HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh---hccCCCCCEEEEEe
Confidence 11111111222222 22334456899999999763 23445555554431 111 1246788999
Q ss_pred eCCChHHHHHHHHHHHHcCcccccC
Q psy1694 222 SNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 222 SN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
||.. +.|... .++.|++...|
T Consensus 291 TN~~-d~LDpA---llR~GRfd~~I 311 (398)
T PTZ00454 291 TNRA-DTLDPA---LLRPGRLDRKI 311 (398)
T ss_pred cCCc-hhCCHH---HcCCCcccEEE
Confidence 9863 334332 34567765443
No 128
>PRK04195 replication factor C large subunit; Provisional
Probab=99.19 E-value=1.6e-10 Score=109.24 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++||+.+++.+.+.+..+..+. .+..++|+||||||||++|+++|+.+. -+++.++.+... ..
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~----~~~~lLL~GppG~GKTtla~ala~el~--------~~~ielnasd~r-----~~ 78 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGK----PKKALLLYGPPGVGKTSLAHALANDYG--------WEVIELNASDQR-----TA 78 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHcC--------CCEEEEcccccc-----cH
Confidence 8999999999999888776321 134689999999999999999999852 245666654421 11
Q ss_pred HHHHHHHHHHHHHHHH-----hCCCeEEEEeCCCCCCh----hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 160 SLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPK----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 160 ~~~~~~l~~~~~~~l~-----~~~~~vlilDEiek~~~----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
. .+...+..... ...+.+|||||+|.+.. +.++.|+..+++. +..+|+++|..
T Consensus 79 ~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------~~~iIli~n~~ 140 (482)
T PRK04195 79 D----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------KQPIILTANDP 140 (482)
T ss_pred H----HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------CCCEEEeccCc
Confidence 1 11111211111 12468999999999976 6688898888863 34567777654
No 129
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.18 E-value=1.3e-10 Score=110.28 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=77.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|++.+++.+.+.+.- +..+. ....|..++|+||||||||++|+++|..+. .+|+.++++.+..
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--------~~~~~i~~~~~~~ 126 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--------VPFFSISGSDFVE 126 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--------CCeeeccHHHHHH
Confidence 388999999888776652 22110 023456799999999999999999988742 3677776554311
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
... +.-...+...+. .......+||||||+|.+.. ..++.|+..|+... +..+.++|
T Consensus 127 ~~~---g~~~~~l~~~f~-~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-----~~~~v~vI 197 (495)
T TIGR01241 127 MFV---GVGASRVRDLFE-QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----TNTGVIVI 197 (495)
T ss_pred HHh---cccHHHHHHHHH-HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-----CCCCeEEE
Confidence 100 000112222222 22334458999999988743 23344555554321 22457888
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
.+||..
T Consensus 198 ~aTn~~ 203 (495)
T TIGR01241 198 AATNRP 203 (495)
T ss_pred EecCCh
Confidence 888874
No 130
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=2.3e-10 Score=103.09 Aligned_cols=124 Identities=12% Similarity=0.174 Sum_probs=79.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+..++.+...+........ .+..++|+||||||||++|+.+|+.+.. .+.....+.+. .
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~GppG~GKT~la~~ia~~l~~--------~~~~~~~~~~~-----~ 89 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGE---ALDHVLLYGPPGLGKTTLANIIANEMGV--------NIRITSGPALE-----K 89 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCC---CCCcEEEECCCCccHHHHHHHHHHHhCC--------CeEEEeccccc-----C
Confidence 489999999988877765433221 2336899999999999999999998532 23222222110 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc----ccc-------cCCceEEEEEeCCC
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQI-------SFQNTIFLFLSNSG 225 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~----~~~-------~~~~~ifI~tSN~g 225 (247)
.+ .+...+. . ...++++||||++.++...++.+...+++.... .+. ......+|+++|..
T Consensus 90 ~~----~l~~~l~-~--l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 90 PG----DLAAILT-N--LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred hH----HHHHHHH-h--cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 11 1122221 1 235689999999999999999998888875421 111 22345677777653
No 131
>KOG0730|consensus
Probab=99.17 E-value=8.4e-11 Score=111.70 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|++..++.+.+++.--...+. .-+.|..+||+||||||||++|+++|+.. .-+|+.+..++++-
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--------~~nFlsvkgpEL~s- 506 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--------GMNFLSVKGPELFS- 506 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh--------cCCeeeccCHHHHH-
Confidence 56699999888887753221111 02356689999999999999999998873 24888887766642
Q ss_pred CCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
.|.++-+..+...+. .+..+|+||||||.+.. -+++.||.-||.-. .-+++++|.
T Consensus 507 ------k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----~~k~V~ViA 575 (693)
T KOG0730|consen 507 ------KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----ALKNVLVIA 575 (693)
T ss_pred ------HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-----ccCcEEEEe
Confidence 233333333433333 34449999999987743 25666776666532 225777777
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
.||..
T Consensus 576 ATNRp 580 (693)
T KOG0730|consen 576 ATNRP 580 (693)
T ss_pred ccCCh
Confidence 77774
No 132
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.16 E-value=5e-11 Score=107.88 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee------ccccc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF------NSRIH 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~------~~~l~ 152 (247)
.++||+.++..+...+.. + +.-.++|.|++|||||++||.+++.+... +--...||.... ++..+
T Consensus 18 ~ivGq~~~k~al~~~~~~----p----~~~~vli~G~~GtGKs~~ar~~~~~l~~~-~~~~~~pf~~~p~~p~~~~~~~~ 88 (350)
T CHL00081 18 AIVGQEEMKLALILNVID----P----KIGGVMIMGDRGTGKSTTIRALVDLLPEI-EVVKDDPFNSHPSDPELMSDEVR 88 (350)
T ss_pred HHhChHHHHHHHHHhccC----C----CCCeEEEEcCCCCCHHHHHHHHHHHHhhc-CccCCCCCCCCCCChhhhchhhh
Confidence 499999988777654432 2 12257899999999999999998886431 000012332000 00000
Q ss_pred C--------------------CC----CChHHH--HHHHHHHH----HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhc
Q psy1694 153 F--------------------PN----ENHVSL--YRLQLTNW----IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI 202 (247)
Q Consensus 153 ~--------------------~~----~~~v~~--~~~~l~~~----~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~L 202 (247)
. |. ...++. ....+.+. -.+.+.++.++++++||++.+++.+|++|+.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam 168 (350)
T CHL00081 89 EAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA 168 (350)
T ss_pred hhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence 0 00 000110 00000100 124456777899999999999999999999999
Q ss_pred ccCccc---cccc---CCceEEEEEeCCChHHHHHHHHHH
Q psy1694 203 DHHAVY---NQIS---FQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 203 e~~~~~---~~~~---~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
+++..+ ++.. -.+.++|.|.|.....+.+.+++.
T Consensus 169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldR 208 (350)
T CHL00081 169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDR 208 (350)
T ss_pred HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHH
Confidence 986422 2321 135677777775443344444443
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.16 E-value=5.1e-10 Score=86.62 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=68.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-HHHHHHHHHHhCCCeEEEEeCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVTACDRAIFIFDEV 187 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-l~~~~~~~l~~~~~~vlilDEi 187 (247)
.++++||||+|||++++.+++.+.. . ..+++.+++........ ....... ...............++++||+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~---~--~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFR---P--GAPFLYLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc---C--CCCeEEEehhhhhhhhH--HHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 6889999999999999999988643 2 23555555544311110 0000000 0011112223345699999999
Q ss_pred CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 188 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 188 ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
+.+++.....++..++..... .....++.+|+++|....
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDL-RIDRENVRVIGATNRPLL 132 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCce-eccCCCeEEEEecCcccc
Confidence 999888888888888874311 122367788999887653
No 134
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=3.4e-10 Score=93.86 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=67.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce-eeecccc----------cCCCCChHHHHHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV-HKFNSRI----------HFPNENHVSLYRLQLTNWIISNV 174 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v-~~~~~~l----------~~~~~~~v~~~~~~l~~~~~~~l 174 (247)
-|-.++|+||+|+|||++|+.+++.+.+.. .....++. ..+|..+ ..+.....+ .+.+...+ ..+
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~--~~~i~~i~-~~~ 88 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK--VDQVRELV-EFL 88 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC--HHHHHHHH-HHH
Confidence 344689999999999999999999987610 00011110 0001000 001111111 11222212 222
Q ss_pred H----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 175 T----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 175 ~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
. ..++.++|+||+|+|++..++.|+.+||+.+ .+++||+++|..
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~ 136 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-------PNTLFILITPSP 136 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 2 2456899999999999999999999999965 678899998743
No 135
>KOG0734|consensus
Probab=99.15 E-value=2.8e-10 Score=106.07 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=87.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccC-----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~-----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|-++|.+.+.+.+. ++.+|.. -+-|..+||+||||||||++||++|-.. ..||++..-++++-
T Consensus 305 dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--------~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--------GVPFFYASGSEFDE 375 (752)
T ss_pred cccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc--------CCCeEeccccchhh
Confidence 58999999988766553 3333321 2357789999999999999999996651 35887776666521
Q ss_pred CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
- |.+.=..+++..+ +.+..+||||||+|.... ..++.||--||...- ..-.|+|
T Consensus 376 ---m----~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q-----NeGiIvi 443 (752)
T KOG0734|consen 376 ---M----FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ-----NEGIIVI 443 (752)
T ss_pred ---h----hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc-----CCceEEE
Confidence 1 2111122333333 334459999999988742 346667766765331 1356777
Q ss_pred EEeCCChHHHHHHHHHHHHcCccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERY 243 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~R 243 (247)
..+|.. +.+.+ .+.+-|||.
T Consensus 444 gATNfp-e~LD~---AL~RPGRFD 463 (752)
T KOG0734|consen 444 GATNFP-EALDK---ALTRPGRFD 463 (752)
T ss_pred eccCCh-hhhhH---HhcCCCccc
Confidence 777874 33333 235566664
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=7.1e-10 Score=99.95 Aligned_cols=112 Identities=13% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------ee---eccccc--CCC----CChHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HK---FNSRIH--FPN----ENHVSLYRLQLTNWI 170 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------~~---~~~~l~--~~~----~~~v~~~~~~l~~~~ 170 (247)
.|-.++|+||+|+||+++|+.+|+.+.+..+.+ ..++= .+ +.+.++ .|. .-.++..++ +.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~ 98 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFV 98 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHH
Confidence 344689999999999999999999998721111 11110 00 001111 111 112232222 22222
Q ss_pred HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
...-...++.|+||||+|+|+.+.+++|++.|||++ .+++||++|+...
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------~~~~fiL~t~~~~ 147 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-------GDTVLLLISHQPS 147 (328)
T ss_pred hhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-------CCeEEEEEECChh
Confidence 111123456999999999999999999999999987 7889999987643
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.13 E-value=2.1e-10 Score=106.83 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=87.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+..++.+.+++...+..+. ....|..++|+||||||||++|+++|+.+. .+|+.+..+++..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--------~~fi~V~~seL~~ 255 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--------ATFLRVVGSELIQ 255 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--------CCEEEEecchhhh
Confidence 478999999999988864332211 123566799999999999999999998743 3677776655432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 221 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~t 221 (247)
. +++.-...+...+ ........+++||||+|.+. ..++..++.+|..- ++. ...+..+|++
T Consensus 256 k---~~Ge~~~~vr~lF-~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---dg~~~~~~V~VI~A 328 (438)
T PTZ00361 256 K---YLGDGPKLVRELF-RVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---DGFDSRGDVKVIMA 328 (438)
T ss_pred h---hcchHHHHHHHHH-HHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---hhhcccCCeEEEEe
Confidence 1 1111111111222 22223445899999998763 23455555555431 111 1246788999
Q ss_pred eCCChHHHHHHHHHHHHcCcccc
Q psy1694 222 SNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 222 SN~g~~~i~~~~~~~~~~g~~Re 244 (247)
||. .+.+... .++.|++..
T Consensus 329 TNr-~d~LDpa---LlRpGRfd~ 347 (438)
T PTZ00361 329 TNR-IESLDPA---LIRPGRIDR 347 (438)
T ss_pred cCC-hHHhhHH---hccCCeeEE
Confidence 986 3444432 345566543
No 138
>CHL00176 ftsH cell division protein; Validated
Probab=99.13 E-value=5.4e-10 Score=108.60 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=85.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+.+++.+.+.+.. +..+. ....|..++|+||||||||++|+++|.... .||+.++++.+..
T Consensus 184 dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--------~p~i~is~s~f~~ 254 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--------VPFFSISGSEFVE 254 (638)
T ss_pred hccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCeeeccHHHHHH
Confidence 388999999888766543 22221 123466799999999999999999988742 3788887765421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
... +.-...+...+. .......++|||||+|.+.. . .++.|+..++... .-.+.++|
T Consensus 255 ~~~---g~~~~~vr~lF~-~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----~~~~ViVI 325 (638)
T CHL00176 255 MFV---GVGAARVRDLFK-KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----GNKGVIVI 325 (638)
T ss_pred Hhh---hhhHHHHHHHHH-HHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----CCCCeeEE
Confidence 111 100111222222 22334458999999998732 2 3444555554321 12466788
Q ss_pred EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
++||... .+.. ..++.||+..
T Consensus 326 aaTN~~~-~LD~---ALlRpGRFd~ 346 (638)
T CHL00176 326 AATNRVD-ILDA---ALLRPGRFDR 346 (638)
T ss_pred EecCchH-hhhh---hhhccccCce
Confidence 8888742 3332 3445666654
No 139
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.11 E-value=6.9e-10 Score=109.17 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=67.5
Q ss_pred hcCChHHHHH---HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAIS---HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~---~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||+..+. .+.+.+. .. +.-.++|+||||||||++|+++++.+- .+|+.+++...
T Consensus 29 d~vGQe~ii~~~~~L~~~i~----~~----~~~slLL~GPpGtGKTTLA~aIA~~~~--------~~f~~lna~~~---- 88 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK----AD----RVGSLILYGPPGVGKTTLARIIANHTR--------AHFSSLNAVLA---- 88 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh----cC----CCceEEEECCCCCCHHHHHHHHHHHhc--------Ccceeehhhhh----
Confidence 3889998875 3333333 22 222579999999999999999988742 35666665321
Q ss_pred CChHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 156 ENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
.+...+..+.. ....+.. ..+.++||||++.++...|+.|++.++++.
T Consensus 89 --~i~dir~~i~~-a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~ 137 (725)
T PRK13341 89 --GVKDLRAEVDR-AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT 137 (725)
T ss_pred --hhHHHHHHHHH-HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce
Confidence 11112221111 1111222 245799999999999999999999998753
No 140
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.10 E-value=1.5e-10 Score=104.35 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=84.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc-cCCCC-----------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGT----------------- 140 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~-~~g~~----------------- 140 (247)
.++||+.+++.+.-++-. .... .++|.|+||||||++|++++..+-.-. .++..
T Consensus 9 ~i~Gq~~~~~~l~~~~~~--~~~~------~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~ 80 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID--PGIG------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS 80 (334)
T ss_pred HhCCHHHHHHHHHHHHhc--cCCC------cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC
Confidence 389999998876643321 1112 479999999999999999999973200 00110
Q ss_pred -------CcceeeecccccCCCCChHHH--HHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 141 -------SRFVHKFNSRIHFPNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 141 -------~~~v~~~~~~l~~~~~~~v~~--~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
.||+..... ..+...+|. +...+. + .-.|.+..+.++++++||++.+++.+|+.|+..|+++..
T Consensus 81 ~~~~~~~~p~~~~p~~---~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 81 TTMIERPTPVVDLPLG---VTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred CcccccCCccccCCCC---CCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 111111100 000111111 111110 0 112445567779999999999999999999999999863
Q ss_pred c---ccc---cCCceEEEEEeCCChHHHHHHHHH
Q psy1694 208 Y---NQI---SFQNTIFLFLSNSGGTEIMNTFLE 235 (247)
Q Consensus 208 ~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~ 235 (247)
+ ++. .-.+.++|.|.|-....+...+++
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld 191 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD 191 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcccCCCCHHHHh
Confidence 2 232 113566777777544334444444
No 141
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.10 E-value=1.2e-10 Score=96.19 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=65.1
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee--cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 185 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~--~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD 185 (247)
.+++|+||||||||++|.++++.+.. .|....|+... +..+.-.... +.+ .. ....+..+ .++|||
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~--~~~----~~-~~~~l~~~--dlLilD 115 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSD--GSY----EE-LLKRLKRV--DLLILD 115 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCC--TTH----CH-HHHHHHTS--SCEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceeccccccccc--cch----hh-hcCccccc--cEeccc
Confidence 37999999999999999999999876 55444343332 1111111000 001 11 22344444 799999
Q ss_pred CCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694 186 EVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235 (247)
Q Consensus 186 Eiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~ 235 (247)
|++..+ +...+.|..+++.+. .+..+|+|||...+++.+.+.+
T Consensus 116 DlG~~~~~~~~~~~l~~ii~~R~-------~~~~tIiTSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 116 DLGYEPLSEWEAELLFEIIDERY-------ERKPTIITSNLSPSELEEVLGD 160 (178)
T ss_dssp TCTSS---HHHHHCTHHHHHHHH-------HT-EEEEEESS-HHHHHT----
T ss_pred ccceeeecccccccchhhhhHhh-------cccCeEeeCCCchhhHhhcccc
Confidence 998765 456777788887743 2346888999999887766553
No 142
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.10 E-value=3.8e-10 Score=94.75 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=74.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-C-Ccce--------e--e
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-T-SRFV--------H--K 146 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~-~~~v--------~--~ 146 (247)
.|+||+.+++.+.-+... .. ++++.||||||||++|+.++..|-....... . .... . .
T Consensus 4 dI~GQe~aKrAL~iAAaG----~h------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~ 73 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----GH------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLI 73 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----C--------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEE
T ss_pred hhcCcHHHHHHHHHHHcC----CC------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCcee
Confidence 489999999877655542 22 6899999999999999999877533100000 0 0000 0 0
Q ss_pred ecccccCCCCChHHHHHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-----ccC-Cce
Q psy1694 147 FNSRIHFPNENHVSLYRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----ISF-QNT 216 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-----~~~-~~~ 216 (247)
...-+-.|+... ....+. + ..-+.+..+.++|+|+||+..+++.+++.|+..|+++.++.. +.| .+.
T Consensus 74 ~~~Pfr~phhs~---s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 74 RQRPFRAPHHSA---SEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp E---EEEE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred cCCCcccCCCCc---CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 000000011110 011010 0 012456788899999999999999999999999999875321 121 366
Q ss_pred EEEEEeCC
Q psy1694 217 IFLFLSNS 224 (247)
Q Consensus 217 ifI~tSN~ 224 (247)
.+|.|+|-
T Consensus 151 ~lv~a~NP 158 (206)
T PF01078_consen 151 LLVAAMNP 158 (206)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecc
Confidence 78888884
No 143
>KOG0744|consensus
Probab=99.09 E-value=5.1e-10 Score=98.90 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=71.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcceeeeccccc---CCCCChHHHHHHHHHHHHHHHHHhCCC-eEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIH---FPNENHVSLYRLQLTNWIISNVTACDR-AIFI 183 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~v~~~~~~l~---~~~~~~v~~~~~~l~~~~~~~l~~~~~-~vli 183 (247)
.+++|||||||||++++++|++|--+... -..+-.+.+++..++ |++.+ .....+-+.+.+.++..+. -.++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESg---KlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESG---KLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhh---hHHHHHHHHHHHHHhCCCcEEEEE
Confidence 58999999999999999999997432111 113456777765553 22222 1233445556555555322 3445
Q ss_pred EeCCCCCCh---------------hhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 184 FDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 184 lDEiek~~~---------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
|||+|.+.. -+.++++.-||.=. .+.|++++.|||....
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----~~~NvliL~TSNl~~s 309 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----RYPNVLILATSNLTDS 309 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEeccchHHH
Confidence 899988732 25778888777622 4689999999997543
No 144
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1.8e-09 Score=97.07 Aligned_cols=127 Identities=10% Similarity=0.163 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------e---eccccc-
Q psy1694 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------K---FNSRIH- 152 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------~---~~~~l~- 152 (247)
+....+.+.+++.+.. .|-.++|+||+|+||+++|+.+|+.+.+..+.+ ..++=. + +.+.++
T Consensus 7 ~~~~~~~l~~~~~~~r-------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 7 LQPTYQQITQAFQQGL-------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred hHHHHHHHHHHHHcCC-------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEE
Confidence 4455555665555321 344689999999999999999999998721111 111100 0 011111
Q ss_pred -CCCC-C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 153 -FPNE-N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 -~~~~-~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
.|.. . .++.-++ +.+.+...-...++.|+|||++|+|....+|+||+.|||++ .+++||++|+..
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------~~~~fiL~t~~~ 147 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-------PNTYFLLQADLS 147 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 1111 1 2222221 22222222223456999999999999999999999999987 889999998754
No 145
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=8.3e-10 Score=99.76 Aligned_cols=128 Identities=10% Similarity=0.167 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC--CCCcc---e---eeecccccC-
Q psy1694 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRF---V---HKFNSRIHF- 153 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g--~~~~~---v---~~~~~~l~~- 153 (247)
+..+.+.+.+.+.+. +.|-.++|+||+|+||+++|..+|+.+.+..+.+ ..+.+ . .-+.+.+++
T Consensus 7 l~~~~~~l~~~~~~~-------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 7 LRPDYEQLVGSYQAG-------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred ChHHHHHHHHHHHcC-------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 445555565555531 1344689999999999999999999998721111 11110 0 001111111
Q ss_pred -CCCC----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 154 -PNEN----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 154 -~~~~----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
|+.+ .+++-++ +.+.+...-...++.|+|||++|+|.....|+||+.|||++ .+++||++|+..
T Consensus 80 ~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~ 148 (334)
T PRK07993 80 TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------ENTWFFLACREP 148 (334)
T ss_pred ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 2211 1222111 12222112223456999999999999999999999999988 889999998753
No 146
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.1e-09 Score=98.13 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-c----c---eeeecccccC
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-R----F---VHKFNSRIHF 153 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~----~---v~~~~~~l~~ 153 (247)
.|..+.+.+..++.+. +-|-.++|+||+|+||+++|..+|+.+++ ..... . + ..-+.+.++.
T Consensus 8 W~~~~~~~l~~~~~~~-------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC---~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 8 WQQRAYDQTVAALDAG-------RLGHGLLICGPEGLGKRAVALALAEHVLA---SGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred cHHHHHHHHHHHHHcC-------CcceeEeeECCCCCCHHHHHHHHHHHHhC---CCCCCCCcchHHHHHhcCCCCCEEE
Confidence 3566666666665531 24446899999999999999999999987 32110 0 0 0001111211
Q ss_pred ----CCCCh----HHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 154 ----PNENH----VSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 154 ----~~~~~----v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
|.... ..-..+++.. +...+.. .++.|+|||++|+|..+.+|+||+.|||++ .+++||++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~~~fiL~ 149 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-------PGRYLWLI 149 (319)
T ss_pred EecCCCcccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-------CCCeEEEE
Confidence 11110 0001112222 2222222 345899999999999999999999999987 78899999
Q ss_pred eCCCh
Q psy1694 222 SNSGG 226 (247)
Q Consensus 222 SN~g~ 226 (247)
|+...
T Consensus 150 ~~~~~ 154 (319)
T PRK08769 150 SAQPA 154 (319)
T ss_pred ECChh
Confidence 88543
No 147
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-09 Score=103.48 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=85.4
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+.|-..+.+.+.+++......+. ....|..+||+||||||||++|+++|..+ ..+|+.+..+++.
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--------~~~fi~v~~~~l~-- 313 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--------RSRFISVKGSELL-- 313 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--------CCeEEEeeCHHHh--
Confidence 45566677777666653222111 13355689999999999999999998863 2588888876552
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..++++....+...+.. -.....+++||||+|++-+ .+.+.++..++.-. +..++.+|.+||
T Consensus 314 -sk~vGesek~ir~~F~~-A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----~~~~v~vi~aTN 386 (494)
T COG0464 314 -SKWVGESEKNIRELFEK-ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----KAEGVLVIAATN 386 (494)
T ss_pred -ccccchHHHHHHHHHHH-HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----ccCceEEEecCC
Confidence 22233223233333322 2233469999999998843 35666666665322 224566677777
Q ss_pred CChHHHHHHHHHHHHcCcccc
Q psy1694 224 SGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 224 ~g~~~i~~~~~~~~~~g~~Re 244 (247)
... .|.. .+++.||+++
T Consensus 387 ~p~-~ld~---a~lR~gRfd~ 403 (494)
T COG0464 387 RPD-DLDP---ALLRPGRFDR 403 (494)
T ss_pred Ccc-ccCH---hhcccCccce
Confidence 642 2332 3344466654
No 148
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.07 E-value=1.3e-09 Score=108.04 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=82.9
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+.|.+.+++.+.+.+......+. ....|..++|+||||||||++|+++|+.+. .+|+.++++++...
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--------~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--------AYFISINGPEIMSK 251 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--------CeEEEEecHHHhcc
Confidence 88999999999888764322211 123455789999999999999999998853 36788776655322
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.. +.....+...+. .......+++||||+|.+.+ .+++.|+..|+.-. +-.+.++|.++|
T Consensus 252 ~~---g~~~~~l~~lf~-~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----~~~~vivI~atn 322 (733)
T TIGR01243 252 YY---GESEERLREIFK-EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----GRGRVIVIGATN 322 (733)
T ss_pred cc---cHHHHHHHHHHH-HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----cCCCEEEEeecC
Confidence 11 212222233332 22334458999999988742 36778888887532 124567777887
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 323 ~~ 324 (733)
T TIGR01243 323 RP 324 (733)
T ss_pred Ch
Confidence 64
No 149
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.05 E-value=2.3e-09 Score=95.82 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEE
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFI 183 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vli 183 (247)
.+++|+||+|||||++|.++|+.+.. .|....|+++. ++ +..++.... ......+.. ..+||
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~--~l-------~~~lk~~~~~~~~~~~l~~l~~--~dlLi 222 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFP--EF-------IRELKNSISDGSVKEKIDAVKE--APVLM 222 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHH--HH-------HHHHHHHHhcCcHHHHHHHhcC--CCEEE
Confidence 46899999999999999999999876 55544444432 21 111111110 111122333 47999
Q ss_pred EeCCCCCC--hhhHHHHHh-hcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 184 FDEVDKFP--KGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 184 lDEiek~~--~~~~~~Ll~-~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
|||++..+ +...+.++. +++.+- ..+..+|+|||...+++.+.+
T Consensus 223 IDDiG~e~~s~~~~~~ll~~Il~~R~------~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 223 LDDIGAEQMSSWVRDEVLGVILQYRM------QEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred EecCCCccccHHHHHHHHHHHHHHHH------HCCCeEEEECCCCHHHHHHHH
Confidence 99997654 455544544 446531 145689999999999988765
No 150
>KOG0731|consensus
Probab=99.04 E-value=8.7e-10 Score=107.28 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=91.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|.+.|.+.|.+.+. ++.+|. ..+-|..++|+||||||||++|+++|-.. .-||+.+.-+++
T Consensus 312 DVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGSEF-- 380 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGSEF-- 380 (774)
T ss_pred cccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechHHH--
Confidence 48999999998877664 333332 13457789999999999999999997761 358888876664
Q ss_pred CCCChHHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCCCh---------------hhHHHHHhhcccCcccccccCCc
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTA---CDRAIFIFDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQN 215 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~---~~~~vlilDEiek~~~---------------~~~~~Ll~~Le~~~~~~~~~~~~ 215 (247)
+..+.+.-..++...+.. ...+++|+||+|.... ..++.|+.-||.... . ..
T Consensus 381 -----vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~----~-~~ 450 (774)
T KOG0731|consen 381 -----VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET----S-KG 450 (774)
T ss_pred -----HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC----C-Cc
Confidence 222222112334444443 3348999999976532 357777777776431 1 56
Q ss_pred eEEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 216 TIFLFLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 216 ~ifI~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
+||+.+||...- +- .++++-||+.-
T Consensus 451 vi~~a~tnr~d~-ld---~allrpGRfdr 475 (774)
T KOG0731|consen 451 VIVLAATNRPDI-LD---PALLRPGRFDR 475 (774)
T ss_pred EEEEeccCCccc-cC---HHhcCCCcccc
Confidence 788888887432 21 34566666643
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.04 E-value=1e-09 Score=108.60 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=82.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++||+..++.+.+.+.+.. +.+++|+||||||||++++.+|+.+.. ... ...++.++++.+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~---~~~p~~l~~~~~~~~~~~~l~a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK--------KNNPLLVGEPGVGKTAIAEGLALRIAE---GKVPENLKNAKIYSLDMGSLLA 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC--------CCceEEECCCCCCHHHHHHHHHHHHHh---CCCchhhcCCeEEEecHHHHhh
Confidence 58999999988777665431 115689999999999999999998754 221 23455555544421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC---------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~---------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
...+.++++..+++.+.. +......++||||++.+. .++++.|++.|+.+ +..+|.+||.
T Consensus 252 -~~~~~g~~e~~l~~i~~~-~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---------~i~~IgaTt~ 320 (731)
T TIGR02639 252 -GTKYRGDFEERLKAVVSE-IEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---------KLRCIGSTTY 320 (731)
T ss_pred -hccccchHHHHHHHHHHH-HhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---------CeEEEEecCH
Confidence 122334455555554432 233456899999999774 34688999999875 3467777764
No 152
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.04 E-value=3.3e-09 Score=97.42 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=82.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC-----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF----- 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~----- 153 (247)
.++|.+..++.+...+.....+. .|..++++||||||||++++.+++.+.. .+..-.++.++|.....
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~----~~~~~lI~G~~GtGKT~l~~~v~~~l~~---~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGS----RPLNVLIYGPPGTGKTTTVKKVFEELEE---IAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---hcCCcEEEEEECCcCCCHHHHH
Confidence 58899999999988887765422 3446899999999999999999998654 33234567777643211
Q ss_pred ----------CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC----hhhHHHHHhhcccCcccccccCCceEE
Q psy1694 154 ----------PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTIF 218 (247)
Q Consensus 154 ----------~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~~~~~if 218 (247)
+.+.....+.+ +...+...+... ...+|+|||+|.+. .+.+..|++.++... -.+..+
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~------~~~v~v 176 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDE-LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP------GARIGV 176 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHH-HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC------CCeEEE
Confidence 00100001111 222333344433 34688999999986 456666666655421 136678
Q ss_pred EEEeCC
Q psy1694 219 LFLSNS 224 (247)
Q Consensus 219 I~tSN~ 224 (247)
|+++|.
T Consensus 177 I~i~~~ 182 (394)
T PRK00411 177 IGISSD 182 (394)
T ss_pred EEEECC
Confidence 888775
No 153
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.03 E-value=3.7e-09 Score=95.66 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=42.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|++.+++.+++.++....+.. .+...++|+||||+|||++|++|++.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999988765322 233468999999999999999999986
No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.03 E-value=3.4e-09 Score=91.71 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=67.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHH--HHHHHHHHHHHhCCCeEEEEeC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL--QLTNWIISNVTACDRAIFIFDE 186 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~--~l~~~~~~~l~~~~~~vlilDE 186 (247)
.++|+|+||||||++|.+|++++.. .+. ..+.+..+++... ....|.. .....+...+. ..++|+|||
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~---~g~--~v~~it~~~l~~~---l~~~~~~~~~~~~~~l~~l~--~~dlLvIDD 170 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL---RGK--SVLIITVADIMSA---MKDTFSNSETSEEQLLNDLS--NVDLLVIDE 170 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---cCC--eEEEEEHHHHHHH---HHHHHhhccccHHHHHHHhc--cCCEEEEeC
Confidence 6899999999999999999999865 442 2233333332100 0001100 00112223333 357999999
Q ss_pred CCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 187 VDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 187 iek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
++..+. ...+.|..+++.+. -++..+|+|||...+++.+.+
T Consensus 171 ig~~~~s~~~~~~l~~Ii~~Ry------~~~~~tiitSNl~~~~l~~~~ 213 (244)
T PRK07952 171 IGVQTESRYEKVIINQIVDRRS------SSKRPTGMLTNSNMEEMTKLL 213 (244)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH------hCCCCEEEeCCCCHHHHHHHh
Confidence 988754 34557777887642 135679999999999877554
No 155
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=3.9e-10 Score=109.91 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=87.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc----------ccc------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK----------RYK------------ 136 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~----------~~~------------ 136 (247)
.|+||+.++..+.-.+. ++. . -.++|.|++|||||++|+.|++.+-. ...
T Consensus 5 ~ivGq~~~~~al~~~av----~~~---~-g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~ 76 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAV----DPR---I-GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRR 76 (633)
T ss_pred hhcChHHHHHHHHHHhh----CCC---C-CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhh
Confidence 48999988865543332 211 1 14899999999999999999988620 000
Q ss_pred -----CCCCCcceeeecccccCCCCChHHH--HHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 137 -----DKGTSRFVHKFNSRIHFPNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 137 -----~g~~~~~v~~~~~~l~~~~~~~v~~--~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
.....||+.+.++.. ....++. +...+. + .-.+.+..+.++++||||++++++.+|+.|+.+|+++
T Consensus 77 ~~~~~~~~~~pfv~~p~~~t---~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g 153 (633)
T TIGR02442 77 KYRPSEQRPVPFVNLPLGAT---EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG 153 (633)
T ss_pred cccccccCCCCeeeCCCCCc---HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence 001245666544321 0001110 111110 0 1124556778899999999999999999999999988
Q ss_pred ccc---ccc---cCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 206 AVY---NQI---SFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 206 ~~~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.+. .+. --.+.++|.|+|.....+...+++.
T Consensus 154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR 190 (633)
T TIGR02442 154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDR 190 (633)
T ss_pred CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhh
Confidence 532 221 1146778888886433444444443
No 156
>PRK08181 transposase; Validated
Probab=99.02 E-value=1.1e-09 Score=96.19 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=67.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH----HHHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL----TNWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l----~~~~~~~l~~~~~~vlil 184 (247)
+++|+||||||||++|.++++.+.. .|... +.+...++ +..++... .......+.. ..++||
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v--~f~~~~~L-------~~~l~~a~~~~~~~~~l~~l~~--~dLLII 173 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRV--LFTRTTDL-------VQKLQVARRELQLESAIAKLDK--FDLLIL 173 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH---cCCce--eeeeHHHH-------HHHHHHHHhCCcHHHHHHHHhc--CCEEEE
Confidence 6899999999999999999998765 44322 22222222 11111100 0111122333 479999
Q ss_pred eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
||++..+. ..+..|..+++.+. .+..+|+|||.+.++..+.+
T Consensus 174 DDlg~~~~~~~~~~~Lf~lin~R~-------~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 174 DDLAYVTKDQAETSVLFELISARY-------ERRSILITANQPFGEWNRVF 217 (269)
T ss_pred eccccccCCHHHHHHHHHHHHHHH-------hCCCEEEEcCCCHHHHHHhc
Confidence 99998865 45677888888642 33468999999998877653
No 157
>KOG0727|consensus
Probab=99.02 E-value=2.1e-09 Score=92.40 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=81.5
Q ss_pred cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-+...+.+++++.--+. ....-+-|..++++||||||||++|+++|+|.- ..|+++.-+++
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--------a~firvvgsef--- 225 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--------AAFIRVVGSEF--- 225 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--------hheeeeccHHH---
Confidence 56677777888888763111 111134566789999999999999999999843 36888876554
Q ss_pred CCChHHHHHH----HHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccc-cCCceEE
Q psy1694 155 NENHVSLYRL----QLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIF 218 (247)
Q Consensus 155 ~~~~v~~~~~----~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~-~~~~~if 218 (247)
+..|-+ ...+.+ ..-+....+++|+||+|.+ +.++|..|+.+|..- ++. ...|+-+
T Consensus 226 ----vqkylgegprmvrdvf-rlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm---dgfdq~~nvkv 297 (408)
T KOG0727|consen 226 ----VQKYLGEGPRMVRDVF-RLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM---DGFDQTTNVKV 297 (408)
T ss_pred ----HHHHhccCcHHHHHHH-HHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCcCcccceEE
Confidence 223322 111222 2233445599999999876 336788888777542 222 2346778
Q ss_pred EEEeCCC
Q psy1694 219 LFLSNSG 225 (247)
Q Consensus 219 I~tSN~g 225 (247)
|+.+|..
T Consensus 298 imatnra 304 (408)
T KOG0727|consen 298 IMATNRA 304 (408)
T ss_pred EEecCcc
Confidence 9998874
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.01 E-value=8.1e-10 Score=99.81 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcc-------ccCCCCCcc-eeeeccc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-------YKDKGTSRF-VHKFNSR 150 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~-------~~~g~~~~~-v~~~~~~ 150 (247)
.++||+.++..+.-.+-. .... .+++.|++|+|||+++++++..+-.. .+.....|+ ...+|..
T Consensus 5 ~ivgq~~~~~al~~~~~~--~~~g------~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 76 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID--PKIG------GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRI 76 (337)
T ss_pred ccccHHHHHHHHHHHhcC--CCCC------eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhh
Confidence 489999998776543321 1111 57899999999999999999885210 000001111 0001110
Q ss_pred -----------------ccCCC----CChHHH--HHHHHHH----HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694 151 -----------------IHFPN----ENHVSL--YRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 151 -----------------l~~~~----~~~v~~--~~~~l~~----~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le 203 (247)
.+.|. ...++. +...+.. .-.+.+.++.++++++||++.+++.+|++|+.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~ 156 (337)
T TIGR02030 77 RVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA 156 (337)
T ss_pred hhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence 01011 011111 1111100 11245566778999999999999999999999999
Q ss_pred cCccc---ccc---cCCceEEEEEeCCChHHHHHHHHH
Q psy1694 204 HHAVY---NQI---SFQNTIFLFLSNSGGTEIMNTFLE 235 (247)
Q Consensus 204 ~~~~~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~ 235 (247)
++..+ .+. --.+.++|.|.|.....+...+++
T Consensus 157 ~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld 194 (337)
T TIGR02030 157 SGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD 194 (337)
T ss_pred hCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh
Confidence 87521 221 113567777777543334444443
No 159
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.00 E-value=2.1e-09 Score=93.61 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-----HHHHHHHHHHhCCCe
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-----LTNWIISNVTACDRA 180 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-----l~~~~~~~l~~~~~~ 180 (247)
++.+++|+||||||||++|.+|++.+.. .|.+.-|+.. +++ +...+.. ....+... -+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~--~el-------~~~Lk~~~~~~~~~~~l~~~--l~~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITA--PDL-------LSKLKAAFDEGRLEEKLLRE--LKKVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEH--HHH-------HHHHHHHHhcCchHHHHHHH--hhcCC
Confidence 3347899999999999999999999875 5544333333 222 2212221 12222222 24458
Q ss_pred EEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694 181 IFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 234 (247)
Q Consensus 181 vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~ 234 (247)
++||||++..|. ...+.+.+++..+.. ++.. |+|||...++..+.+-
T Consensus 170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~------~~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 170 LLIIDDIGYEPFSQEEADLLFQLISRRYE------SRSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred EEEEecccCccCCHHHHHHHHHHHHHHHh------hccc-eeecCCChHHHHhhcc
Confidence 999999998765 356666666665321 3334 9999998887766543
No 160
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.00 E-value=2.9e-09 Score=90.25 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=64.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 186 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDE 186 (247)
+..++|+||+|||||++|+.+++.... .+ .+++.++|..+.. .....+ ..+.. .++++|||
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~---~~--~~~~~i~~~~~~~-----------~~~~~~-~~~~~--~~lLvIDd 98 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE---RG--KSAIYLPLAELAQ-----------ADPEVL-EGLEQ--ADLVCLDD 98 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEeHHHHHH-----------hHHHHH-hhccc--CCEEEEeC
Confidence 336899999999999999999988654 32 3567777665421 001111 22222 36999999
Q ss_pred CCCCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694 187 VDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 187 iek~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~ 228 (247)
++.++... +..|..+++... + .+..+|+|||...+.
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~-----~-~~~~iIits~~~~~~ 136 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVR-----E-AGGRLLIAGRAAPAQ 136 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHH-----H-cCCeEEEECCCChHH
Confidence 99998744 888888876522 0 223678888876644
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.99 E-value=2.5e-09 Score=107.25 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++||+..++.+.+.+.+.. .+ +++|+||||||||++++.+|+.+.. ... ...++..+++.+.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~--~~------n~lLvG~pGvGKTal~~~La~~i~~---~~v~~~l~~~~i~~l~l~~l~- 255 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR--QN------NPILTGEAGVGKTAVVEGLALRIAA---GDVPPALRNVRLLSLDLGLLQ- 255 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC--cC------ceeEECCCCCCHHHHHHHHHHHHhh---CCCCccccCCeEEEeehhhhh-
Confidence 58999998887777665421 11 4589999999999999999998654 211 1234444444432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----h---hHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----G---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
....+.+.+...++..+...-......|+||||++.+.. + .-+.|++.|+.+. ..+|.+||.
T Consensus 256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~---------l~~IgaTT~ 325 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE---------LRTIAATTW 325 (852)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC---------eEEEEecCH
Confidence 112334556666666664433334568999999999853 2 3347999998864 356666654
No 162
>PRK06526 transposase; Provisional
Probab=98.99 E-value=2.4e-09 Score=93.20 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=65.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-HHHHHHHHHH-hCCCeEEEEeC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVT-ACDRAIFIFDE 186 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-l~~~~~~~l~-~~~~~vlilDE 186 (247)
+++|+||||||||++|.+|+..+.. .|...-|+. ++++ +...... ..+.....+. -....++||||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t--~~~l-------~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFAT--AAQW-------VARLAAAHHAGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhh--HHHH-------HHHHHHHHhcCcHHHHHHHhccCCEEEEcc
Confidence 7899999999999999999998765 443322221 1111 1111000 0001111111 23458999999
Q ss_pred CCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 187 VDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 187 iek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
++..+ +..++.|..+++... .+..+|+|||...+...+.
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~-------~~~s~IitSn~~~~~w~~~ 208 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRY-------ERASLIVTSNKPFGRWGEV 208 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHH-------hcCCEEEEcCCCHHHHHHH
Confidence 99886 566778888887632 3446899999988876554
No 163
>KOG0729|consensus
Probab=98.99 E-value=4e-09 Score=91.30 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=84.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|-...++.+++.+..-+.++. .-+-|..++++||||||||++||++|+. .+..|+++.-|++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--------tdacfirvigsel-- 247 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--------TDACFIRVIGSEL-- 247 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--------cCceEEeehhHHH--
Confidence 367788888888888864322221 0234557899999999999999999765 2457888876665
Q ss_pred CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCC-ceEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQ-NTIF 218 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~-~~if 218 (247)
++.|.+.=..-+++.+ +....+++||||||.+. .++|..++.++.. .++.|-| |.-+
T Consensus 248 -----vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q---ldgfdprgnikv 319 (435)
T KOG0729|consen 248 -----VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ---LDGFDPRGNIKV 319 (435)
T ss_pred -----HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh---ccCCCCCCCeEE
Confidence 4445442222233333 33445999999998762 3678888887653 3344433 5556
Q ss_pred EEEeCCC
Q psy1694 219 LFLSNSG 225 (247)
Q Consensus 219 I~tSN~g 225 (247)
++.+|..
T Consensus 320 lmatnrp 326 (435)
T KOG0729|consen 320 LMATNRP 326 (435)
T ss_pred EeecCCC
Confidence 7777764
No 164
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.3e-09 Score=92.92 Aligned_cols=129 Identities=12% Similarity=0.167 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcc---eee---eccccc--C
Q psy1694 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRF---VHK---FNSRIH--F 153 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~---v~~---~~~~l~--~ 153 (247)
+.+..+.+.+++.+. +-|-.++|+||.|+||+.+|+.+|+.+.+.... +..+.+ ..+ +.+.++ .
T Consensus 8 l~~~~~~l~~~~~~~-------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHHHcC-------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence 445555565555431 134468999999999999999999999873111 000000 000 011111 1
Q ss_pred CCC--C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 154 PNE--N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 154 ~~~--~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
|.. . .+++.++ +.+.+...-...++.|+|||++|+|+...+|+|++.|||++ .+++||++|+...
T Consensus 81 p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~ 149 (319)
T PRK06090 81 PEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------PNCLFLLVTHNQK 149 (319)
T ss_pred cCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence 111 1 1222111 11122111223456999999999999999999999999987 7899999987643
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.98 E-value=7.6e-09 Score=93.27 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=67.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh-HHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH-VSLYRLQLTNWIISNVTACDRAIFIFDEV 187 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~-v~~~~~~l~~~~~~~l~~~~~~vlilDEi 187 (247)
+++|+||||||||++|.++|+.+.. .|. ..+.+...++....... ... ....... ...+..| .+|||||+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~---~g~--~V~y~t~~~l~~~l~~~~~~~-~~~~~~~-~~~l~~~--DLLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLD---RGK--SVIYRTADELIEILREIRFNN-DKELEEV-YDLLINC--DLLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHH---CCC--eEEEEEHHHHHHHHHHHHhcc-chhHHHH-HHHhccC--CEEEEecc
Confidence 6899999999999999999999876 443 22333333321100000 000 0000111 1333444 79999999
Q ss_pred CCC--ChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 188 DKF--PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 188 ek~--~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
+.. .+..+..|..+++++.. ++..+|+|||.+++++.+.
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~------~~k~tIiTSNl~~~el~~~ 296 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLL------RQKKMIISTNLSLEELLKT 296 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHH
Confidence 665 56778888888887431 2346899999999988654
No 166
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=5.3e-09 Score=95.03 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=79.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCcceeeecccccCCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRIHFPNEN 157 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~~~~~~l~~~~~~ 157 (247)
.+.|++..++.+...+.....+. +|..++++||||||||++++.+.+.+..... .+..-++++++|.....+..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~----~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~- 90 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGS----RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ- 90 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH-
Confidence 48999999999999888765432 4446899999999999999999988643100 11113566777644321100
Q ss_pred hHHHHH-----------------HHHHHHHHHHHHh-CCCeEEEEeCCCCCCh---hhHHHHHhhcccCcccccccCCce
Q psy1694 158 HVSLYR-----------------LQLTNWIISNVTA-CDRAIFIFDEVDKFPK---GLLDVIIPFIDHHAVYNQISFQNT 216 (247)
Q Consensus 158 ~v~~~~-----------------~~l~~~~~~~l~~-~~~~vlilDEiek~~~---~~~~~Ll~~Le~~~~~~~~~~~~~ 216 (247)
.....- ..+...+.+.+.. ....+|+|||+|.+.. +++..|.+..+.. .....+.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~----~~~~~~v 166 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG----DLDNAKV 166 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc----CCCCCeE
Confidence 000000 0111222233333 3346899999999942 3344444442211 1122567
Q ss_pred EEEEEeCCC
Q psy1694 217 IFLFLSNSG 225 (247)
Q Consensus 217 ifI~tSN~g 225 (247)
++|+++|..
T Consensus 167 ~lI~i~n~~ 175 (365)
T TIGR02928 167 GVIGISNDL 175 (365)
T ss_pred EEEEEECCc
Confidence 888888764
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.97 E-value=2.8e-09 Score=107.02 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=80.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+.. .+ +++|+||||||||++|+.+|..+.. ... ..+++.++++.+..
T Consensus 179 ~vigr~~ei~~~i~iL~r~~--~~------n~lL~G~pGvGKT~l~~~la~~i~~---~~vp~~l~~~~~~~l~l~~l~a 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT--KN------NPVLIGEPGVGKTAIVEGLAQRIIN---GEVPEGLKGRRVLALDMGALVA 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC--cC------ceEEECCCCCCHHHHHHHHHHHhhc---CCCchhhCCCEEEEEehhhhhh
Confidence 49999998888887776532 22 4588999999999999999998653 111 23444554444321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
...+.+.+.+.++..+...-......++||||++.+.. +.++.|++.|..+. ..+|.+||..
T Consensus 248 -g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~---------l~~IgaTt~~ 317 (857)
T PRK10865 248 -GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE---------LHCVGATTLD 317 (857)
T ss_pred -ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCC---------CeEEEcCCCH
Confidence 12223334444444443222223457999999998853 36899999998864 3555555543
No 168
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=6.5e-09 Score=91.84 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=71.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee---eccccc--CCCCC----hHHHHHHHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---FNSRIH--FPNEN----HVSLYRLQLTNWIISNVTA 176 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~---~~~~l~--~~~~~----~v~~~~~~l~~~~~~~l~~ 176 (247)
-|-.++|+||.|+||+.+|..+|+.+++ ......+..+ ..+.++ .|... .+++-+ .+...+...-..
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC---~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR-~l~~~~~~~p~e 93 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILK---ETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPR-AIKKQIWIHPYE 93 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhC---CCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHH-HHHHHHhhCccC
Confidence 3446899999999999999999999987 3211111000 011111 12211 122211 122222111122
Q ss_pred CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
.++.|++||++|+|.++.+++|++.|||++ .+++||++|+....
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------~~~~fiL~~~~~~~ 137 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPP-------QHGVIILTSAKPQR 137 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCC-------CCeEEEEEeCChhh
Confidence 456999999999999999999999999987 88999999876433
No 169
>PRK06893 DNA replication initiation factor; Validated
Probab=98.97 E-value=3.6e-09 Score=90.68 Aligned_cols=98 Identities=9% Similarity=0.190 Sum_probs=61.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||||||||++++++++.+.. .+....|+... .. ..+. ..+...+. ...+++|||++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~--~~--------~~~~----~~~~~~~~--~~dlLilDDi~ 101 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLS--KS--------QYFS----PAVLENLE--QQDLVCLDDLQ 101 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHH--Hh--------hhhh----HHHHhhcc--cCCEEEEeChh
Confidence 4789999999999999999999765 44333333322 10 0010 11112222 34799999999
Q ss_pred CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694 189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~ 230 (247)
.+. +..+..|..+++... +-.+.++|+|+|..++++.
T Consensus 102 ~~~~~~~~~~~l~~l~n~~~-----~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 102 AVIGNEEWELAIFDLFNRIK-----EQGKTLLLISADCSPHALS 140 (229)
T ss_pred hhcCChHHHHHHHHHHHHHH-----HcCCcEEEEeCCCChHHcc
Confidence 875 344556666666421 1134567889999888776
No 170
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3e-09 Score=96.26 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
.++.|+|||++|+|.+...|+||+.|||++ .+++||++|+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~ 173 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP-------PGTVFLLVSARID 173 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC-------cCcEEEEEECChh
Confidence 456999999999999999999999999987 7889999987643
No 171
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.96 E-value=3.1e-09 Score=95.19 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=66.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHH----H--HHHHHHHHHHHh--CCCe
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYR----L--QLTNWIISNVTA--CDRA 180 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~----~--~l~~~~~~~l~~--~~~~ 180 (247)
.++|.||||||||++++.+|+.+.. +++.+++.....+. ..++... + ....+..+.+.. ..+.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~--------~~~rV~~~~~l~~~-DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ 136 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW--------PCVRVNLDSHVSRI-DLVGKDAIVLKDGKQITEFRDGILPWALQHNV 136 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC--------CeEEEEecCCCChh-hcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence 4799999999999999999998633 67777764321110 0111000 0 000011111111 2347
Q ss_pred EEEEeCCCCCChhhHHHHHhhccc-Ccccc-c----c-cCCceEEEEEeCC
Q psy1694 181 IFIFDEVDKFPKGLLDVIIPFIDH-HAVYN-Q----I-SFQNTIFLFLSNS 224 (247)
Q Consensus 181 vlilDEiek~~~~~~~~Ll~~Le~-~~~~~-~----~-~~~~~ifI~tSN~ 224 (247)
++++||++.++++++..|.++||. +.++. + + ......+|+|.|.
T Consensus 137 illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 137 ALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred EEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 799999999999999999999995 33321 1 2 2235668999996
No 172
>KOG0651|consensus
Probab=98.95 E-value=4.7e-09 Score=92.37 Aligned_cols=133 Identities=14% Similarity=0.200 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-...+..+++.+.-++.++. .-.-|+.++|+||||+|||++|++++..+- .+|+.+..+++.
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--------~nfl~v~ss~lv-- 203 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--------VNFLKVVSSALV-- 203 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC--------CceEEeeHhhhh--
Confidence 45555555666665543333221 134578899999999999999999988742 478877776652
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..++++-...+.+....+-.. ..+++|+||||.. +..+|..|+.+++.-. ......++-+|+|+|
T Consensus 204 -~kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd--gfd~l~rVk~ImatN 279 (388)
T KOG0651|consen 204 -DKYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD--GFDTLHRVKTIMATN 279 (388)
T ss_pred -hhhcccHHHHHHHHHHHHhhh-CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc--cchhcccccEEEecC
Confidence 222222222222333222222 2389999999765 3367888888887421 122456788999999
Q ss_pred CCh
Q psy1694 224 SGG 226 (247)
Q Consensus 224 ~g~ 226 (247)
...
T Consensus 280 rpd 282 (388)
T KOG0651|consen 280 RPD 282 (388)
T ss_pred Ccc
Confidence 754
No 173
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.94 E-value=1.1e-08 Score=87.98 Aligned_cols=108 Identities=9% Similarity=0.100 Sum_probs=62.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||+|+|||++++++++.+.. .+....|+..+ .. ..+.. .+.+.+.. ..+++|||++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~--~~--------~~~~~----~~~~~~~~--~dlliiDdi~ 107 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLD--KR--------AWFVP----EVLEGMEQ--LSLVCIDNIE 107 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHH--HH--------hhhhH----HHHHHhhh--CCEEEEeChh
Confidence 6799999999999999999998665 43222232221 11 00111 11122333 3699999999
Q ss_pred CCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH---HHHHHHHHHcC
Q psy1694 189 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI---MNTFLELRKSG 240 (247)
Q Consensus 189 k~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i---~~~~~~~~~~g 240 (247)
.++. ..+..|..++.... +..+..+|+|||..+..+ ...+......|
T Consensus 108 ~~~~~~~~~~~lf~l~n~~~-----e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g 159 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRIL-----ESGRTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred hhcCCHHHHHHHHHHHHHHH-----HcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence 9863 33444444433311 112346888999888874 45555555544
No 174
>PRK08727 hypothetical protein; Validated
Probab=98.93 E-value=1e-08 Score=88.10 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=64.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||+|||||++++++++.+.. .+....| +.+.+ +...+...+ ..+.. ..+|+|||++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y--~~~~~-----------~~~~~~~~~-~~l~~--~dlLiIDDi~ 103 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAY--LPLQA-----------AAGRLRDAL-EALEG--RSLVALDGLE 103 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEE--EeHHH-----------hhhhHHHHH-HHHhc--CCEEEEeCcc
Confidence 4799999999999999999998765 4432222 22222 111112222 22333 3699999999
Q ss_pred CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694 189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235 (247)
Q Consensus 189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~ 235 (247)
.++ +..+..+..+++... .++..+|+|||..++++.....+
T Consensus 104 ~l~~~~~~~~~lf~l~n~~~------~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 104 SIAGQREDEVALFDFHNRAR------AAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred cccCChHHHHHHHHHHHHHH------HcCCeEEEECCCChhhhhhhhHH
Confidence 986 345566776666532 12345999999999887543333
No 175
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.93 E-value=2.3e-09 Score=101.50 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=78.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--------------------C
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--------------------K 138 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--------------------g 138 (247)
.++||+.+++.+.-++ .... .++|.||||+|||++|+.++..+...... .
T Consensus 193 dv~Gq~~~~~al~~aa----~~g~------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~ 262 (499)
T TIGR00368 193 DIKGQQHAKRALEIAA----AGGH------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQI 262 (499)
T ss_pred HhcCcHHHHhhhhhhc----cCCC------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcccccc
Confidence 4788887765444332 2222 68999999999999999998754320000 0
Q ss_pred CCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---c--cc-
Q psy1694 139 GTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q--IS- 212 (247)
Q Consensus 139 ~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~--~~- 212 (247)
...||...+++.. ....++ +- ...-.+.+..+.++++||||++++++.+|+.|++.||++.+.. + ..
T Consensus 263 ~~~Pf~~p~~s~s---~~~~~g---gg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~ 335 (499)
T TIGR00368 263 KQRPFRSPHHSAS---KPALVG---GG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY 335 (499)
T ss_pred ccCCccccccccc---hhhhhC---Cc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence 0123332222110 000000 00 0012246778889999999999999999999999999986421 1 11
Q ss_pred CCceEEEEEeCC
Q psy1694 213 FQNTIFLFLSNS 224 (247)
Q Consensus 213 ~~~~ifI~tSN~ 224 (247)
-.+..+|+++|.
T Consensus 336 pa~frlIaa~Np 347 (499)
T TIGR00368 336 PARFQLVAAMNP 347 (499)
T ss_pred cCCeEEEEecCC
Confidence 146778999996
No 176
>KOG0739|consensus
Probab=98.92 E-value=3.7e-09 Score=92.72 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=88.8
Q ss_pred ccHHHHHHHHHh------------hcCChHHHHHHHHHHHHH-----hhhcccCCCCC-eEEEEeecCCChHHHHHHHHH
Q psy1694 67 SNVRVLEEQLKQ------------HVHGQELAISHICGALKN-----HFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 67 ~~~~~L~~~L~~------------~l~Gq~~a~~~l~~~l~~-----~~~~~~~~~kp-l~lll~G~~GtGKt~~A~~la 128 (247)
++.+.|+..|.. .+-|-+.|.+.|.+++.- ++-+. .++| ..+||+|||||||+++|+++|
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG--kR~PwrgiLLyGPPGTGKSYLAKAVA 187 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG--KRKPWRGILLYGPPGTGKSYLAKAVA 187 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC--CCCcceeEEEeCCCCCcHHHHHHHHH
Confidence 345667777766 367888899999888752 12122 2355 469999999999999999997
Q ss_pred HHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHH---HHHHHHhCCCeEEEEeCCCCCCh-------hh----
Q psy1694 129 SSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW---IISNVTACDRAIFIFDEVDKFPK-------GL---- 194 (247)
Q Consensus 129 ~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~---~~~~l~~~~~~vlilDEiek~~~-------~~---- 194 (247)
-.. .+.|+.+..+.+ +..|-+..+.. +.+.-++...+++|+||||.+.- +.
T Consensus 188 TEA--------nSTFFSvSSSDL-------vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRI 252 (439)
T KOG0739|consen 188 TEA--------NSTFFSVSSSDL-------VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRI 252 (439)
T ss_pred hhc--------CCceEEeehHHH-------HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHH
Confidence 762 256777765544 33343322232 33344455669999999998732 11
Q ss_pred HHHHHhhcccCcccccccCCceEEEEEeCCC---hHHHHHH
Q psy1694 195 LDVIIPFIDHHAVYNQISFQNTIFLFLSNSG---GTEIMNT 232 (247)
Q Consensus 195 ~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g---~~~i~~~ 232 (247)
-.-+|-.|+. -+.|...+.++..+|.. .+.|.+.
T Consensus 253 KTEfLVQMqG----VG~d~~gvLVLgATNiPw~LDsAIRRR 289 (439)
T KOG0739|consen 253 KTEFLVQMQG----VGNDNDGVLVLGATNIPWVLDSAIRRR 289 (439)
T ss_pred HHHHHHhhhc----cccCCCceEEEecCCCchhHHHHHHHH
Confidence 1122222221 13355667777778865 3444443
No 177
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.92 E-value=8.5e-10 Score=85.84 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=54.5
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-cccCCCCChHH--HHHHHHHHHHHHHHHhC--CCeEEEE
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHFPNENHVS--LYRLQLTNWIISNVTAC--DRAIFIF 184 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-~l~~~~~~~v~--~~~~~l~~~~~~~l~~~--~~~vlil 184 (247)
+|++|+||+|||++|+++|+.+-. .|.++-+. .+. | ....+ -|... .+.+ .+... -..++++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~--------~f~RIq~tpdll-P-sDi~G~~v~~~~-~~~f--~~~~GPif~~ill~ 68 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL--------SFKRIQFTPDLL-P-SDILGFPVYDQE-TGEF--EFRPGPIFTNILLA 68 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----------EEEEE--TT---H-HHHHEEEEEETT-TTEE--EEEE-TT-SSEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCC--------ceeEEEecCCCC-c-ccceeeeeeccC-CCee--EeecChhhhceeee
Confidence 689999999999999999998532 45554331 110 0 00000 00000 0000 00011 1279999
Q ss_pred eCCCCCChhhHHHHHhhcccCcccc-cc--cCCc-eEEEEEeCC
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHAVYN-QI--SFQN-TIFLFLSNS 224 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~~~~-~~--~~~~-~ifI~tSN~ 224 (247)
||+++.|+..|++|+++|+|++++. +. ...+ ..+|.|-|-
T Consensus 69 DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 69 DEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred cccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 9999999999999999999998653 32 2333 566777775
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=2.5e-09 Score=101.81 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=82.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-
Q psy1694 72 LEEQLKQHVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK- 146 (247)
Q Consensus 72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~- 146 (247)
|.+.+...++|++.++..+.-++-..... ........++||.|+||||||++|+.+++.. + . +.|+..
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~-~---r---~~~~~~~ 269 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA-P---R---AVYTTGK 269 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHc-C---c---ceEcCCC
Confidence 44555557999998876665544332100 0001223469999999999999999998763 2 1 223221
Q ss_pred --ecccccCCC-CC-hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc---ccc---cCCce
Q psy1694 147 --FNSRIHFPN-EN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SFQNT 216 (247)
Q Consensus 147 --~~~~l~~~~-~~-~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~---~~~---~~~~~ 216 (247)
++..+.... .. ..+.+. .-.+.+..+.++++++||+++|++..|..|+++|+++.+. .+. --.++
T Consensus 270 ~~~~~~l~~~~~~~~~~g~~~-----~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 270 GSSAVGLTAAVTRDPETREFT-----LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred CCCcCCccccceEccCcceEE-----ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 111111000 00 000000 0113456678899999999999999999999999987642 121 11345
Q ss_pred EEEEEeCC
Q psy1694 217 IFLFLSNS 224 (247)
Q Consensus 217 ifI~tSN~ 224 (247)
.+|+++|-
T Consensus 345 ~viAa~NP 352 (509)
T smart00350 345 SVLAAANP 352 (509)
T ss_pred EEEEEeCC
Confidence 56666663
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=9.6e-09 Score=78.51 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=61.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC----------ChHHHHHHHHHHHHHHHHHhC
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE----------NHVSLYRLQLTNWIISNVTAC 177 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~----------~~v~~~~~~l~~~~~~~l~~~ 177 (247)
..++|+||||||||++++.++..+.. .+ ..++.+.+........ .....................
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP---PG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC---CC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999998655 22 2345554433211000 000001111112232333444
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhcccCc-ccccccCCceEEEEEeCC
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHA-VYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~-~~~~~~~~~~ifI~tSN~ 224 (247)
...++++||++++................ ........+..+|+++|.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 45999999999998876665544311000 000012256788999884
No 180
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-08 Score=91.98 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=85.0
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
+-+.+..++++...+...+.+. .|.+++++|+||||||.+++.+.+.+.. ......++++||-....+..-..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~----~p~n~~iyG~~GTGKT~~~~~v~~~l~~---~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE----RPSNIIIYGPTGTGKTATVKFVMEELEE---SSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC----CCccEEEECCCCCCHhHHHHHHHHHHHh---hhccCceEEEeeeeCCCHHHHHH
Confidence 6777778888888887776554 4556899999999999999999999765 32233378999855432221000
Q ss_pred ------------HHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 160 ------------SLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 160 ------------~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
+.-..+..+.+.+.+... ..-+++|||+|.|... ++..|.+.-++. ..+.++|+++|
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-------~~~v~vi~i~n 164 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-------KVKVSIIAVSN 164 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc-------ceeEEEEEEec
Confidence 000112233444555553 3478889999999775 444454444443 35677888887
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
.-
T Consensus 165 ~~ 166 (366)
T COG1474 165 DD 166 (366)
T ss_pred cH
Confidence 64
No 181
>PRK06921 hypothetical protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=88.90 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=63.9
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcceeeecccccCCCCChHHHHHHHHH--HHHHHHHHhCCCeEEEE
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIHFPNENHVSLYRLQLT--NWIISNVTACDRAIFIF 184 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~--~~~~~~l~~~~~~vlil 184 (247)
..++|+||||+|||++|.+|++.+.. . +.. .+.+...++ +........ ......+. ...+|||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~---~~g~~--v~y~~~~~l-------~~~l~~~~~~~~~~~~~~~--~~dlLiI 183 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR---KKGVP--VLYFPFVEG-------FGDLKDDFDLLEAKLNRMK--KVEVLFI 183 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh---hcCce--EEEEEHHHH-------HHHHHHHHHHHHHHHHHhc--CCCEEEE
Confidence 36899999999999999999999765 3 322 222222221 111111110 11112222 3479999
Q ss_pred eCCCC-------CChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694 185 DEVDK-------FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 185 DEiek-------~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~ 231 (247)
||++. .++..+..|..+++.+.. ++..+|+|||..++++.+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~------~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYL------NHKPILISSELTIDELLD 231 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHhh
Confidence 99933 455566778888876421 234579999999988764
No 182
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.90 E-value=1.2e-08 Score=86.93 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=61.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||+|||||++|+++++.+.. .+ .+++.+++.... . .. . .....+++++||++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~---~~--~~~~~i~~~~~~-----------~----~~-~--~~~~~~~liiDdi~ 100 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASY---GG--RNARYLDAASPL-----------L----AF-D--FDPEAELYAVDDVE 100 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CC--CcEEEEehHHhH-----------H----HH-h--hcccCCEEEEeChh
Confidence 5799999999999999999998655 33 345555543320 0 01 1 12235799999999
Q ss_pred CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
.+++..+..|..+++... +..+.++|++++..+
T Consensus 101 ~l~~~~~~~L~~~~~~~~-----~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVR-----AHGQGALLVAGPAAP 133 (227)
T ss_pred hcCchHHHHHHHHHHHHH-----HcCCcEEEEeCCCCH
Confidence 999999999988886522 113345777777654
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.90 E-value=7.3e-09 Score=103.86 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=78.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+.. ++ +++|+||||||||++|+.+|..+.. ... ..+++.++.+.+..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~--~~------n~lL~G~pGvGKTal~~~la~~i~~---~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT--KN------NPILIGEPGVGKTAIAEGLAQRIVN---RDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc--cC------CeEEECCCCCCHHHHHHHHHHHHHh---CCCChhhcCCeEEEeeHHHHhc
Confidence 48999999988888876532 11 4589999999999999999998653 111 23566666554432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCc
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHA 206 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~ 206 (247)
...+.++|++.+++.+.. +......++||||++.+-. ++.+.|++.|..+.
T Consensus 249 -g~~~~ge~e~rl~~i~~~-~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~ 307 (821)
T CHL00095 249 -GTKYRGEFEERLKRIFDE-IQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE 307 (821)
T ss_pred -cCCCccHHHHHHHHHHHH-HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC
Confidence 123335566655555533 3445568999999975532 46788999998764
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=98.89 E-value=6.3e-09 Score=103.39 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=73.6
Q ss_pred EEee--cCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh-----CCCeEEE
Q psy1694 111 SLHG--LPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-----CDRAIFI 183 (247)
Q Consensus 111 ll~G--~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~-----~~~~vli 183 (247)
+..| |++.|||++|.++|+.+++ ++...+++.+|.+.. ..++.. ++.+...... .++.++|
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g---~~~~~~~lElNASd~-----rgid~I----R~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFG---ENWRHNFLELNASDE-----RGINVI----REKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhc---ccccCeEEEEeCCCc-----ccHHHH----HHHHHHHHhcCCcCCCCCEEEE
Confidence 4568 9999999999999999988 666678888887653 112222 2223222211 1347999
Q ss_pred EeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 184 FDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 184 lDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
|||+|+|+.+.|++|++.||+++ .++.||+++|....
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~-------~~~~FILi~N~~~k 672 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSK 672 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCC-------CCeEEEEEeCChhh
Confidence 99999999999999999999976 78899999997543
No 185
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.88 E-value=6.9e-09 Score=108.43 Aligned_cols=124 Identities=12% Similarity=0.222 Sum_probs=75.2
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC----------C---------hH--------
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE----------N---------HV-------- 159 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~----------~---------~v-------- 159 (247)
|..+|++||||||||++|+++|...+ .||+.+..+++....+ + .+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~--------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY--------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC--------CceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 45799999999999999999998843 4888888776642110 0 00
Q ss_pred -H--------HHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCChh-----hHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 160 -S--------LYRLQLTNWIISNV---TACDRAIFIFDEVDKFPKG-----LLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 160 -~--------~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~~~-----~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
+ .+.+.-..++...+ ++...+||+|||||.+... .+..|+..|+... ...+.+++++|++|
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--ERCSTRNILVIAST 1779 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--ccCCCCCEEEEEeC
Confidence 0 00110011122223 3445699999999999753 3567777777421 11133678899999
Q ss_pred CCChHHHHHHHHHHHHcCcccc
Q psy1694 223 NSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 223 N~g~~~i~~~~~~~~~~g~~Re 244 (247)
|... .+- ..+++-||+..
T Consensus 1780 NRPD-~LD---PALLRPGRFDR 1797 (2281)
T CHL00206 1780 HIPQ-KVD---PALIAPNKLNT 1797 (2281)
T ss_pred CCcc-cCC---HhHcCCCCCCe
Confidence 9743 333 23455566544
No 186
>KOG0728|consensus
Probab=98.88 E-value=1.5e-08 Score=87.01 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=78.6
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-+..+..+.+.+.--...|. .-.+|..++|+||||||||++|+++|.|..+ .|+++.-+++
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--------~firvsgsel--- 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------TFIRVSGSEL--- 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce--------EEEEechHHH---
Confidence 44566666666666643211111 1336778999999999999999999988544 5777765554
Q ss_pred CCChHHHHHHHHHHHHHHH---HHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEE
Q psy1694 155 NENHVSLYRLQLTNWIISN---VTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFL 219 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~---l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI 219 (247)
+..|-+.=..-+++. -+....+++|.||||.+. .++|..++.+|.. .|+. ...|.-+|
T Consensus 218 ----vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq---ldgfeatknikvi 290 (404)
T KOG0728|consen 218 ----VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ---LDGFEATKNIKVI 290 (404)
T ss_pred ----HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh---ccccccccceEEE
Confidence 333433111112221 223344899999999873 3688888887754 2232 23456678
Q ss_pred EEeCC
Q psy1694 220 FLSNS 224 (247)
Q Consensus 220 ~tSN~ 224 (247)
+.+|.
T Consensus 291 matnr 295 (404)
T KOG0728|consen 291 MATNR 295 (404)
T ss_pred Eeccc
Confidence 88875
No 187
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=8.5e-09 Score=89.52 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc---ceee---ecccccC--CCCChHHHHHHHHHHHHHHHHH--
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR---FVHK---FNSRIHF--PNENHVSLYRLQLTNWIISNVT-- 175 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~---~v~~---~~~~l~~--~~~~~v~~~~~~l~~~~~~~l~-- 175 (247)
.|-.++|+||+|+||..+|..+|+.+.+....+..+. +..+ ..+.+++ |....++ .++..+ +...+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~ir~-l~~~l~~~ 82 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KEDALS-IINKLNRP 82 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHHHHH-HHHHHccC
Confidence 4557899999999999999999999887211111111 1111 1122222 2221221 112222 222222
Q ss_pred ---hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 176 ---ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 176 ---~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
..++.|+++|++|+|.....++||++|||++ .+++||++|+...
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------~~t~fiLit~~~~ 129 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------KNTYGIFTTRNEN 129 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------CCeEEEEEECChH
Confidence 2356999999999999999999999999988 8999999987643
No 188
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.84 E-value=1.7e-08 Score=101.61 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=77.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+.- .. +++|+||||||||++++.+++.+.. ... ..+++.++.+.+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~--~~------n~lL~G~pGvGKT~l~~~la~~i~~---~~~p~~l~~~~~~~l~~~~l~a 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT--KN------NPVLIGEPGVGKTAIVEGLAQRIVN---GDVPESLKNKRLLALDMGALIA 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC--CC------ceEEEcCCCCCHHHHHHHHHHHHhc---cCCchhhcCCeEEEeeHHHHhh
Confidence 49999998888877775421 11 4578999999999999999998644 111 22344444433321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
...+.+.+...+...+...-......++||||++.+.. +..+.|++.+..+. ..+|.+||.
T Consensus 243 -~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~---------i~~IgaTt~ 311 (852)
T TIGR03346 243 -GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE---------LHCIGATTL 311 (852)
T ss_pred -cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc---------eEEEEeCcH
Confidence 11222334444444443222223468999999998852 46788888887653 356666554
No 189
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.83 E-value=8.3e-09 Score=102.49 Aligned_cols=129 Identities=13% Similarity=0.038 Sum_probs=77.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhc----c---------cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694 73 EEQLKQHVHGQELAISHICGALKNHFQN----R---------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139 (247)
Q Consensus 73 ~~~L~~~l~Gq~~a~~~l~~~l~~~~~~----~---------~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~ 139 (247)
...+...++|.+.++..+.=++-..... . ...+....+||.|+||||||.+|+.+++.- .+..-..
T Consensus 445 ~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls-pR~~yts 523 (915)
T PTZ00111 445 LDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS-PRSIYTS 523 (915)
T ss_pred HHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC-CccccCC
Confidence 3344446899998887776555332110 0 001223479999999999999999997752 2000001
Q ss_pred CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
..+++.+.+...........+.+ ..-.+.+..+.+|+++|||+++|++..|.+|+++|+.+++
T Consensus 524 G~~~s~vgLTa~~~~~d~~tG~~-----~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtI 586 (915)
T PTZ00111 524 GKSSSSVGLTASIKFNESDNGRA-----MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTV 586 (915)
T ss_pred CCCCccccccchhhhcccccCcc-----cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEE
Confidence 23455444432110000000101 0112456678889999999999999999999999998764
No 190
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.83 E-value=1.2e-08 Score=100.95 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=79.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|.+..++.+.+.+.+. .+. +++|+||||||||++|+.+|..+.. ... ...++..+.+.+..
T Consensus 187 ~liGR~~ei~~~i~iL~r~--~~~------n~LLvGppGvGKT~lae~la~~i~~---~~vP~~l~~~~~~~l~~~~lla 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--RKN------NPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--CCC------CeEEECCCCCCHHHHHHHHHHHHHh---cCCCchhcCCeEEeccHHHHhc
Confidence 5999999999998877763 122 4588999999999999999987544 221 11222222222211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
...+.+.+.+.+...+ ..+..+..+++||||++.+ ..++.+.|++++..+ +..+|.+||.
T Consensus 256 -G~~~~Ge~e~rl~~l~-~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------~i~vIgATt~ 324 (758)
T PRK11034 256 -GTKYRGDFEKRFKALL-KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTTY 324 (758)
T ss_pred -ccchhhhHHHHHHHHH-HHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------CeEEEecCCh
Confidence 1122334444444433 3445666789999999876 234566788888774 4567777766
Q ss_pred C
Q psy1694 225 G 225 (247)
Q Consensus 225 g 225 (247)
.
T Consensus 325 ~ 325 (758)
T PRK11034 325 Q 325 (758)
T ss_pred H
Confidence 3
No 191
>KOG0735|consensus
Probab=98.82 E-value=2.7e-08 Score=95.57 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=82.8
Q ss_pred cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-..+.+.+.+.+.--.. ....-+.+..++|+||||||||++|.++|.. ++ -+|+.+.-+++
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~-~~-------~~fisvKGPEl--- 737 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN-SN-------LRFISVKGPEL--- 737 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh-CC-------eeEEEecCHHH---
Confidence 55666666666666642100 0110133447999999999999999999776 22 25655544443
Q ss_pred CCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
...|-++.+..++..+. .|..+++||||+|.+.| -+.+.|+.-||.-+ -=+.++|+
T Consensus 738 ----L~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl~GV~i~ 807 (952)
T KOG0735|consen 738 ----LSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------GLDGVYIL 807 (952)
T ss_pred ----HHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------ccceEEEE
Confidence 23344433444444444 45669999999999976 36788888887643 24557777
Q ss_pred EeCCChHHHHHHH
Q psy1694 221 LSNSGGTEIMNTF 233 (247)
Q Consensus 221 tSN~g~~~i~~~~ 233 (247)
.+..-++-|...+
T Consensus 808 aaTsRpdliDpAL 820 (952)
T KOG0735|consen 808 AATSRPDLIDPAL 820 (952)
T ss_pred EecCCccccCHhh
Confidence 7776666666443
No 192
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.81 E-value=7.1e-08 Score=90.56 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=77.9
Q ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 75 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++..+.|.+.. ....++..++..+..... .++|+|++|+|||++++++++.+.. .......+.+.+.++
T Consensus 113 tFdnFv~g~~n~--~A~~aa~~~a~~~~~~~n--pl~i~G~~G~GKTHLl~Ai~~~l~~---~~~~~~v~yv~~~~f--- 182 (450)
T PRK14087 113 TFENFVIGSSNE--QAFIAVQTVSKNPGISYN--PLFIYGESGMGKTHLLKAAKNYIES---NFSDLKVSYMSGDEF--- 182 (450)
T ss_pred chhcccCCCcHH--HHHHHHHHHHhCcCcccC--ceEEECCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHH---
Confidence 455567786432 223444444433321122 3689999999999999999998654 222233444443332
Q ss_pred CCChHHHHHHHHHH---HHHHHHH-hCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694 155 NENHVSLYRLQLTN---WIISNVT-ACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 155 ~~~~v~~~~~~l~~---~~~~~l~-~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~ 228 (247)
...+...+.. .+..... .....+|+|||++.+. +..++.|..++..... ++..+|+|||..++.
T Consensus 183 ----~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~------~~k~iIltsd~~P~~ 252 (450)
T PRK14087 183 ----ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE------NDKQLFFSSDKSPEL 252 (450)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH------cCCcEEEECCCCHHH
Confidence 1112211111 1111111 1334799999999987 5677777777765321 233689999999887
Q ss_pred HH
Q psy1694 229 IM 230 (247)
Q Consensus 229 i~ 230 (247)
++
T Consensus 253 l~ 254 (450)
T PRK14087 253 LN 254 (450)
T ss_pred Hh
Confidence 75
No 193
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.80 E-value=2.2e-08 Score=92.67 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=77.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
++..++|.+... ...++..+...+. ..+..++|+||+|+|||++++++++.+.. ......++.+++..+..
T Consensus 109 fd~fi~g~~n~~--a~~~~~~~~~~~~--~~~n~l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~~~~~~~-- 179 (405)
T TIGR00362 109 FDNFVVGKSNRL--AHAAALAVAENPG--KAYNPLFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVSSEKFTN-- 179 (405)
T ss_pred ccccccCCcHHH--HHHHHHHHHhCcC--ccCCeEEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEEHHHHHH--
Confidence 333466754432 2333344433322 12235789999999999999999999765 32234455665543210
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~ 231 (247)
.............+.+.+.. .++|+|||++.+.. ..+..+...++.... .+..+|+|||..++++..
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~------~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 180 -DFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNALHE------NGKQIVLTSDRPPKELPG 248 (405)
T ss_pred -HHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHHH------CCCCEEEecCCCHHHHhh
Confidence 00010100001112233333 37999999998854 456667776664210 233578899988887764
No 194
>KOG0726|consensus
Probab=98.79 E-value=1.4e-08 Score=88.90 Aligned_cols=128 Identities=16% Similarity=0.281 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|-+..++.+.+++.--+.++. ...-|..++++|+||||||++|+++|+.. + ..|.++--+++
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-S-------ATFlRvvGseL-- 255 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-S-------ATFLRVVGSEL-- 255 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-c-------hhhhhhhhHHH--
Confidence 467788888888888864332221 02345678999999999999999998863 1 35666654444
Q ss_pred CCCChHHHHHHH---HHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCC-ceEE
Q psy1694 154 PNENHVSLYRLQ---LTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQ-NTIF 218 (247)
Q Consensus 154 ~~~~~v~~~~~~---l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~-~~if 218 (247)
+..|-+. +-.++...-.....+++|+||||.... ++|..++.+|.. .++.|.| .+-+
T Consensus 256 -----iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ---ldGFdsrgDvKv 327 (440)
T KOG0726|consen 256 -----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ---LDGFDSRGDVKV 327 (440)
T ss_pred -----HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh---ccCccccCCeEE
Confidence 2333221 122222222334459999999987732 578888877754 2333333 4557
Q ss_pred EEEeCC
Q psy1694 219 LFLSNS 224 (247)
Q Consensus 219 I~tSN~ 224 (247)
|+.+|.
T Consensus 328 imATnr 333 (440)
T KOG0726|consen 328 IMATNR 333 (440)
T ss_pred EEeccc
Confidence 777775
No 195
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=4.8e-08 Score=96.47 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=85.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCC-CcceeeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGT-SRFVHKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~-~~~v~~~~~~l~~~~~ 156 (247)
.|.|.+.-++.|...+...+.+.. .+.+++++|+||||||.+++.+.+.|-.... .+.. -.++++||..+..+..
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsg---pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSG---SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCC---CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 588999999999999988765432 1124679999999999999999888643100 1111 3467888854322211
Q ss_pred ChHHH--------------HHHHHHHHHHHHH-HhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 157 NHVSL--------------YRLQLTNWIISNV-TACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 157 ~~v~~--------------~~~~l~~~~~~~l-~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
.+..- ....+...+ ..+ .... ..+|||||||.+....++.|+.+++.... .-.+.++|+
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF-~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~----s~SKLiLIG 907 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLF-NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK----INSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHH-hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc----cCCeEEEEE
Confidence 10000 001111111 222 1122 25899999999987777888877765321 225788999
Q ss_pred EeCC
Q psy1694 221 LSNS 224 (247)
Q Consensus 221 tSN~ 224 (247)
+||.
T Consensus 908 ISNd 911 (1164)
T PTZ00112 908 ISNT 911 (1164)
T ss_pred ecCc
Confidence 9984
No 196
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=6.9e-08 Score=87.02 Aligned_cols=113 Identities=11% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee---------eccccc--CCC-----CC------hHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------FNSRIH--FPN-----EN------HVSLYR 163 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~---------~~~~l~--~~~-----~~------~v~~~~ 163 (247)
.|-.++|+||+|+||+++|+.+|+.+.+..+.....++=.. +.+.+. .|. .+ .++..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 44478999999999999999999998762110001111000 001111 110 01 122222
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 164 LQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 164 ~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
+ +.+.+...-...++.|+++|+++.|++..++.|++.||+.. .++.||++|+...
T Consensus 100 ~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------~~~~~Ilvth~~~ 154 (325)
T PRK08699 100 E-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-------PQVVFLLVSHAAD 154 (325)
T ss_pred H-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-------CCCEEEEEeCChH
Confidence 1 11222111122456999999999999999999999999975 4567888876543
No 197
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.78 E-value=3.2e-08 Score=92.93 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=68.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil 184 (247)
.++|+||+|+|||++++++++.+.. ......++.+++..+. ..+...+. ..+...+. ...+|+|
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~dlLii 217 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTSEKFT-------NDFVNALRNNTMEEFKEKYR--SVDVLLI 217 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHH-------HHHHHHHHcCcHHHHHHHHh--cCCEEEE
Confidence 4799999999999999999999765 3223344555544321 11111111 12223333 3479999
Q ss_pred eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH---HHHHHHHHcC
Q psy1694 185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM---NTFLELRKSG 240 (247)
Q Consensus 185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~---~~~~~~~~~g 240 (247)
||++.+.. ..+..+...++.... .+..+|+|||..++.+. +.+...+..|
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~~------~~~~iiits~~~p~~l~~l~~~l~SRl~~g 272 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALHE------AGKQIVLTSDRPPKELPGLEERLRSRFEWG 272 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHH------CCCcEEEECCCCHHHHHHHHHHHHhHhcCC
Confidence 99998854 356666666554210 12347889998887754 4444444433
No 198
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.77 E-value=7.4e-09 Score=100.16 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH-H---HHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT-N---WIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~-~---~~~~~l~~~~~~vlil 184 (247)
.++|.|++|||||++|+.+++.+-. ..||+.+..+.......+.+.-+ ..+. + .-.+.+..+.++++++
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~------~~pfv~i~~~~t~d~L~G~idl~-~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPP------IMPFVELPLGVTEDRLIGGIDVE-ESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCc------CCCeEecCcccchhhcccchhhh-hhhhcCcccCCCCCeeeCCCCcEec
Confidence 4899999999999999999886322 24788776421111011111100 0000 0 1123455677899999
Q ss_pred eCCCCCChhhHHHHHhhcccCcccc---cccC---CceEEEEEeCCC
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHAVYN---QISF---QNTIFLFLSNSG 225 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~~~~---~~~~---~~~ifI~tSN~g 225 (247)
||++++++.+|+.|+.+|+++.++. +... .+..+|.|+|..
T Consensus 91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~ 137 (589)
T TIGR02031 91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA 137 (589)
T ss_pred cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc
Confidence 9999999999999999999986321 2211 256788888864
No 199
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=6.2e-08 Score=85.77 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc------eeee---ccccc
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF------VHKF---NSRIH 152 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~------v~~~---~~~l~ 152 (247)
.|+.+++.+.+++.+.. -|-.++|+|| +||+.+|+.+|+.+++....+ ..++ ..+. .+.+.
T Consensus 6 ~q~~~~~~L~~~~~~~r-------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~-~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR-------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEG-VLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCC-------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCee
Confidence 46677777777666422 3336899996 689999999999998721110 1111 1111 12221
Q ss_pred C--CCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 153 F--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ~--~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
. |....++ .+++.... ..+. ..++.|+|||++|+|.+...|+||+.|||++ .+++||++|+..
T Consensus 76 ~i~p~~~~I~--idqIR~l~-~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-------~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIK--TDTIRELV-KNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-------SEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCC--HHHHHHHH-HHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 1 1111111 11222222 2222 2456999999999999999999999999987 788999998764
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=87.21 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=64.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH-HHHHHHHHH--hCCCeEEEEe
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL-TNWIISNVT--ACDRAIFIFD 185 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l-~~~~~~~l~--~~~~~vlilD 185 (247)
+++|+||||||||++|.+++..+.. .|...-| +.+.++ ...+.... .+.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~--~~~~~l-------~~~l~~a~~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRF--TTAADL-------LLQLSTAQRQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEE--EeHHHH-------HHHHHHHHHCCcHHHHHHHHhcCCCEEEEc
Confidence 6889999999999999999887554 4322222 222222 11111100 001111121 1234799999
Q ss_pred CCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 186 EVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 186 Eiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
|++..+. ...+.|.++++.+. .+..+|+|||.+.++..+..
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-------~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-------EKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-------hcCcEEEecCCCHHHHHHHh
Confidence 9998654 55667888887632 23348999999988876554
No 201
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.76 E-value=6.6e-08 Score=90.57 Aligned_cols=135 Identities=11% Similarity=0.100 Sum_probs=74.6
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
++..+.|.+... ...++..+..++. .+..++|+||+|+|||++++++++.+.. .......+.+++.++
T Consensus 104 FdnFv~g~~n~~--a~~~~~~~~~~~~---~~n~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~~~f---- 171 (440)
T PRK14088 104 FENFVVGPGNSF--AYHAALEVAKNPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF---- 171 (440)
T ss_pred ccccccCCchHH--HHHHHHHHHhCcC---CCCeEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHH----
Confidence 444577754332 2233334443332 2334799999999999999999998755 332334455544332
Q ss_pred CChHHHHHHHHH----HHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 156 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 156 ~~~v~~~~~~l~----~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
...+...+. ..+...+. ....+++|||++.+. ...+..+...+.+.. + .+..+|+|||..++.+
T Consensus 172 ---~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-----~-~~k~iIitsd~~p~~l 241 (440)
T PRK14088 172 ---LNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKL 241 (440)
T ss_pred ---HHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-----H-cCCeEEEECCCCHHHH
Confidence 111111111 11212221 135799999999874 335556666554421 1 2236788888888876
Q ss_pred HHH
Q psy1694 230 MNT 232 (247)
Q Consensus 230 ~~~ 232 (247)
...
T Consensus 242 ~~l 244 (440)
T PRK14088 242 SEF 244 (440)
T ss_pred HHH
Confidence 654
No 202
>KOG0652|consensus
Probab=98.76 E-value=7.3e-08 Score=83.37 Aligned_cols=128 Identities=13% Similarity=0.221 Sum_probs=76.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+-|-+..++.+.+++---+..+. .-.-|..++++||||||||++||+.|..... .|...
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--------TFLKL------- 236 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--------TFLKL------- 236 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--------hHHHh-------
Confidence 367788888888888742111110 0234557899999999999999999776322 23222
Q ss_pred CCCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIF 218 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~if 218 (247)
..|..+..|-+.=...++.++. .....++|+||+|.+. .++|..++.+|.. .++. ...+.-+
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ---LDGFss~~~vKv 313 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ---LDGFSSDDRVKV 313 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh---hcCCCCccceEE
Confidence 2233344443322223333333 2334899999998763 3688888887754 2221 2235557
Q ss_pred EEEeCC
Q psy1694 219 LFLSNS 224 (247)
Q Consensus 219 I~tSN~ 224 (247)
|..+|.
T Consensus 314 iAATNR 319 (424)
T KOG0652|consen 314 IAATNR 319 (424)
T ss_pred Eeeccc
Confidence 777775
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.75 E-value=3.9e-08 Score=76.02 Aligned_cols=106 Identities=13% Similarity=0.257 Sum_probs=65.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--------------cCCCCChHHHHHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI--------------HFPNENHVSLYRLQLTNWIISN 173 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l--------------~~~~~~~v~~~~~~l~~~~~~~ 173 (247)
..++++||+|+|||++++.+++.+..........+.+.++++.. ..+... ......+.+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLIDA 82 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHHH
Confidence 36889999999999999999988643100000234555554222 111111 01122334556666
Q ss_pred HHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 174 VTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 174 l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+.+....+++|||+|.+ +...++.|...+++ .+.-+|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~---------~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNE---------SNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCS---------CBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhC---------CCCeEEEEECh
Confidence 67766679999999999 99999999888874 44556666543
No 204
>KOG0990|consensus
Probab=98.72 E-value=6.8e-09 Score=91.63 Aligned_cols=127 Identities=19% Similarity=0.102 Sum_probs=81.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.+++|++.+..+.+. ... ++-| .+||+||||||||.+..+.|+.+++. .+..+.....+.+.-.+.....
T Consensus 42 dv~~~~ei~st~~~~----~~~---~~lP-h~L~YgPPGtGktsti~a~a~~ly~~--~~~~~m~lelnaSd~rgid~vr 111 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRY----SGM---PGLP-HLLFYGPPGTGKTSTILANARDFYSP--HPTTSMLLELNASDDRGIDPVR 111 (360)
T ss_pred hHhcCCchhhHHHHh----ccC---CCCC-cccccCCCCCCCCCchhhhhhhhcCC--CCchhHHHHhhccCccCCcchH
Confidence 377887777666544 111 3344 68999999999999999999998872 2222223333333322222211
Q ss_pred HHHHHHHHHH--HHH--HHHH-hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 159 VSLYRLQLTN--WII--SNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 159 v~~~~~~l~~--~~~--~~l~-~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
++... ... ..++ .+...++|+||+|.|..+.|++|.++++... .|+-|+..+|....
T Consensus 112 -----~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-------~n~rF~ii~n~~~k 173 (360)
T KOG0990|consen 112 -----QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-------ANTRFATISNPPQK 173 (360)
T ss_pred -----HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-------cceEEEEeccChhh
Confidence 11111 111 1111 2456899999999999999999999988865 56678888887544
No 205
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.5e-08 Score=94.42 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=83.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH- 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~- 152 (247)
.+-|.+++++.+.+.+. ++.++. ...-|..+++.||||||||++|+++|... ..||+.+.-|++.
T Consensus 151 DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA--------~VPFf~iSGS~FVe 221 (596)
T COG0465 151 DVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--------GVPFFSISGSDFVE 221 (596)
T ss_pred hhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc--------CCCceeccchhhhh
Confidence 48899999998887764 222222 13467889999999999999999997762 2355555433221
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCc
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQN 215 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~ 215 (247)
+...+ ...+.+.++-+++| +++||||+|.... ..++.|+.-||... .-.-
T Consensus 222 mfVGvGAs-------RVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-----~~~g 288 (596)
T COG0465 222 MFVGVGAS-------RVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----GNEG 288 (596)
T ss_pred hhcCCCcH-------HHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-----CCCc
Confidence 11111 11233333334444 8999999988743 25777777777532 1123
Q ss_pred eEEEEEeCCChHHHHHHHHHHHHcCccccc
Q psy1694 216 TIFLFLSNSGGTEIMNTFLELRKSGERYIT 245 (247)
Q Consensus 216 ~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~ 245 (247)
.|+|..||.. ++-. -.+++-|||...
T Consensus 289 viviaaTNRp--dVlD--~ALlRpgRFDRq 314 (596)
T COG0465 289 VIVIAATNRP--DVLD--PALLRPGRFDRQ 314 (596)
T ss_pred eEEEecCCCc--ccch--HhhcCCCCccee
Confidence 4455555552 2221 245566666543
No 206
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.72 E-value=6.8e-08 Score=94.49 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=77.4
Q ss_pred hcCChHHHHHHHHHHHHHhhh----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.+.|.+.+.+.+.+.+.-... .......|..++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--------~~f~~is~~~~~~~ 224 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVEM 224 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--------CCEEEEehHHhHHh
Confidence 378888888877766543110 000012345699999999999999999988742 37777776543211
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
.++.-...+...+. .......+++||||+|.+.. ..++.++..|+... +....++|+
T Consensus 225 ---~~g~~~~~~~~~f~-~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----~~~~vivIa 295 (644)
T PRK10733 225 ---FVGVGASRVRDMFE-QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIA 295 (644)
T ss_pred ---hhcccHHHHHHHHH-HHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----CCCCeeEEE
Confidence 11100111222222 22334558999999998832 24566666666421 124678889
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
+||..
T Consensus 296 aTN~p 300 (644)
T PRK10733 296 ATNRP 300 (644)
T ss_pred ecCCh
Confidence 99863
No 207
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.70 E-value=5.2e-08 Score=83.04 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=69.3
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEEe
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIFD 185 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlilD 185 (247)
++++||+|+|||++.+++++.+.. .......++++..++ ...+...+. ..+...+ ....+++||
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~---~~~~~~v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~--~~~DlL~iD 104 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK---QHPGKRVVYLSAEEF-------IREFADALRDGEIEEFKDRL--RSADLLIID 104 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---HCTTS-EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHH--CTSSEEEEE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh---ccccccceeecHHHH-------HHHHHHHHHcccchhhhhhh--hcCCEEEEe
Confidence 688999999999999999998654 222334455544332 111222111 1122222 345899999
Q ss_pred CCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH---HHHHHHHHcC
Q psy1694 186 EVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM---NTFLELRKSG 240 (247)
Q Consensus 186 Eiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~---~~~~~~~~~g 240 (247)
+++.+.. ..|..|..+++.... ++..+|+||+..++++. ..+...+..|
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~------~~k~li~ts~~~P~~l~~~~~~L~SRl~~G 158 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIE------SGKQLILTSDRPPSELSGLLPDLRSRLSWG 158 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHH------TTSEEEEEESS-TTTTTTS-HHHHHHHHCS
T ss_pred cchhhcCchHHHHHHHHHHHHHHh------hCCeEEEEeCCCCccccccChhhhhhHhhc
Confidence 9999975 457888888776321 34468999988877653 4444444444
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.69 E-value=1.7e-07 Score=87.27 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=66.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCC--Ccceeee--cc--c-ccCCCCChHHHHH---HHHHHHHHHHHHh-C
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVHKF--NS--R-IHFPNENHVSLYR---LQLTNWIISNVTA-C 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~~~--~~--~-l~~~~~~~v~~~~---~~l~~~~~~~l~~-~ 177 (247)
+++|+||||||||++|+.+|+.+.. .... ..+|.+. .+ . +.+..+..++ |. +.+.+....+... .
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~---~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg-y~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTG---EKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG-FRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcC---CcccceeeEEeecccccHHHHhcccCCCCCC-eEecCchHHHHHHHHHhccc
Confidence 6789999999999999999998654 2111 1112221 00 1 1111122211 21 1111222222111 2
Q ss_pred CCeEEEEeCCCCCCh-hhHHHHHhhcccCcc--------c----cc---ccCCceEEEEEeCCChHHH
Q psy1694 178 DRAIFIFDEVDKFPK-GLLDVIIPFIDHHAV--------Y----NQ---ISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 178 ~~~vlilDEiek~~~-~~~~~Ll~~Le~~~~--------~----~~---~~~~~~ifI~tSN~g~~~i 229 (247)
...++||||+++.+. .++..++.+||.... . +. .--.|..+|.|.|.....+
T Consensus 272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 358999999999996 468888888886310 0 00 1225888999999887543
No 209
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.2e-08 Score=92.73 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=78.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC---------CCCccee----
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---------GTSRFVH---- 145 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g---------~~~~~v~---- 145 (247)
.|+||+.|++.+.-+.. ..+ ++++.||||||||++|+.+...|-...... ....+..
T Consensus 180 DV~GQ~~AKrAleiAAA---GgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~ 249 (490)
T COG0606 180 DVKGQEQAKRALEIAAA---GGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred hhcCcHHHHHHHHHHHh---cCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCcc
Confidence 49999999987765443 233 589999999999999999866643200000 0000000
Q ss_pred eecccccCCCCC-----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-----ccC-C
Q psy1694 146 KFNSRIHFPNEN-----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----ISF-Q 214 (247)
Q Consensus 146 ~~~~~l~~~~~~-----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-----~~~-~ 214 (247)
....-+-.|+.+ .++.+ ..-..+.+..+.+||+||||+-.....+++.|.+-||++.+... +.| .
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG----~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa 325 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGG----GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPA 325 (490)
T ss_pred ceeCCccCCCccchHHHHhCCC----CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEee
Confidence 000001111111 11111 00112445667789999999999999999999999999976433 222 2
Q ss_pred ceEEEEEeCC
Q psy1694 215 NTIFLFLSNS 224 (247)
Q Consensus 215 ~~ifI~tSN~ 224 (247)
+..+++.+|.
T Consensus 326 ~Fqlv~AmNp 335 (490)
T COG0606 326 RFQLVAAMNP 335 (490)
T ss_pred eeEEhhhcCC
Confidence 5556666663
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.69 E-value=3.1e-08 Score=96.14 Aligned_cols=51 Identities=31% Similarity=0.388 Sum_probs=41.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 73 EEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 73 ~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.+.++||+.+.+.+..++... . .++|+||||||||++++++++.+..
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~~----~------~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQK----R------NVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHcC----C------CEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3456778999999998887777632 1 5679999999999999999998754
No 211
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.68 E-value=5.7e-08 Score=92.04 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=69.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-----ccc------c---cCCCCChHHHHHHHHHH---HHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----NSR------I---HFPNENHVSLYRLQLTN---WII 171 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-----~~~------l---~~~~~~~v~~~~~~l~~---~~~ 171 (247)
.+++.||+|+|||++++.++..+... .+ ...+... ++. + .|-.+..-.+....+.+ .-.
T Consensus 212 ~llliG~~GsGKTtLak~L~gllpp~--~g--~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 212 NLLLIGPPGTGKTMLASRINGLLPDL--SN--EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred EEEEECCCCCcHHHHHHHHhccCCCC--CC--cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 68999999999999999997764321 00 0001000 000 0 00001000001111111 123
Q ss_pred HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---cc---cCCceEEEEEeCCC
Q psy1694 172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIFLFLSNSG 225 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~~---~~~~~ifI~tSN~g 225 (247)
+.+..+.++++|+||++.+++.+|+.|++.||++.++. +. --.+..+|.|+|.-
T Consensus 288 G~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 288 GEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPS 347 (506)
T ss_pred hHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCc
Confidence 67888999999999999999999999999999987531 11 22467799999964
No 212
>PRK05642 DNA replication initiation factor; Validated
Probab=98.67 E-value=1.2e-07 Score=81.63 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=62.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||+|+|||++++++++.+.. .+. ..+.+...++.. . ...+.+.+..+ .++++|+++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~---~~~--~v~y~~~~~~~~-----------~-~~~~~~~~~~~--d~LiiDDi~ 107 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQ---RGE--PAVYLPLAELLD-----------R-GPELLDNLEQY--ELVCLDDLD 107 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CCC--cEEEeeHHHHHh-----------h-hHHHHHhhhhC--CEEEEechh
Confidence 5789999999999999999988654 332 334444333211 0 11222334444 699999999
Q ss_pred CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694 189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~ 230 (247)
..+ +..+..|...++... .++..+|+|||..+.++.
T Consensus 108 ~~~~~~~~~~~Lf~l~n~~~------~~g~~ilits~~~p~~l~ 145 (234)
T PRK05642 108 VIAGKADWEEALFHLFNRLR------DSGRRLLLAASKSPRELP 145 (234)
T ss_pred hhcCChHHHHHHHHHHHHHH------hcCCEEEEeCCCCHHHcC
Confidence 875 355666777776522 134468889988877654
No 213
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.1e-07 Score=82.86 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=67.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCC---CCc--ceeeecccccCCCCChHHHHHHHHHHHHHHHHH-----hCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TSR--FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----ACD 178 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~---~~~--~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-----~~~ 178 (247)
+.+|+|+.|.||+.+|+.+++.+++.+..+. ..| +..+ + +....++ .+++.... +.+. ..+
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-----d-~~g~~i~--vd~Ir~l~-~~~~~~~~~~~~ 90 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-----D-IFDKDLS--KSEFLSAI-NKLYFSSFVQSQ 90 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-----c-cCCCcCC--HHHHHHHH-HHhccCCcccCC
Confidence 6899999999999999999999866211111 112 1111 1 0011111 12223222 2222 136
Q ss_pred CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 179 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 179 ~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.|+++|++|+|....+++|++.||+++ .+++||++|+..
T Consensus 91 ~KvvII~~~e~m~~~a~NaLLK~LEEPp-------~~t~~il~~~~~ 130 (299)
T PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEEPP-------KDTYFLLTTKNI 130 (299)
T ss_pred ceEEEEecccccCHHHHHHHHHHhhCCC-------CCeEEEEEeCCh
Confidence 6999999999999999999999999987 889999988743
No 214
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=90.77 Aligned_cols=104 Identities=10% Similarity=0.095 Sum_probs=62.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil 184 (247)
.++|+|++|+|||+++++|++.+.. .......+++.+.++. ..+...+. ..+...+.. .++|+|
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~---~~~g~~V~Yitaeef~-------~el~~al~~~~~~~f~~~y~~--~DLLlI 383 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARR---LYPGTRVRYVSSEEFT-------NEFINSIRDGKGDSFRRRYRE--MDILLV 383 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHHH-------HHHHHHHHhccHHHHHHHhhc--CCEEEE
Confidence 3799999999999999999998653 1111233444443321 11211111 122233333 389999
Q ss_pred eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694 185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~ 230 (247)
||++.+.. ..+..|..+++... + ++.-+|+|||...++++
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~-----e-~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLH-----N-ANKQIVLSSDRPPKQLV 425 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHH-----h-cCCCEEEecCCChHhhh
Confidence 99999854 34566666666522 1 22347789999888765
No 215
>KOG0732|consensus
Probab=98.63 E-value=1.5e-07 Score=94.40 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=80.8
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|-+..++.+.+.+-.-+..+. ....|..++||||||||||++|+++|.++-. .. .-+.+++..-..-
T Consensus 267 vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~---~~---~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 267 VGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR---GN---RKISFFMRKGADC 340 (1080)
T ss_pred cccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc---cc---cccchhhhcCchh
Confidence 56677777777766643211111 1334667999999999999999999999543 11 1122222111111
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
....++.-..++.-.. +..+++..+++||||||-+.| .+...|+.+|+.-. ...+.++|.++|
T Consensus 341 lskwvgEaERqlrllF-eeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-----sRgqVvvigATn 414 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLF-EEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-----SRGQVVVIGATN 414 (1080)
T ss_pred hccccCcHHHHHHHHH-HHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-----CCCceEEEcccC
Confidence 1233343333333333 334556679999999996544 56778888887522 235788888888
Q ss_pred CCh
Q psy1694 224 SGG 226 (247)
Q Consensus 224 ~g~ 226 (247)
...
T Consensus 415 Rpd 417 (1080)
T KOG0732|consen 415 RPD 417 (1080)
T ss_pred Ccc
Confidence 743
No 216
>KOG0737|consensus
Probab=98.60 E-value=2.4e-07 Score=83.26 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHHhh-------hcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc
Q psy1694 80 VHGQELAISHICGALKNHF-------QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 152 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~-------~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~ 152 (247)
+-|-+..++.+.+.+.--+ ..+- -+.|..+|++||||||||.+|+++|+.. ..+|+.+.++.+.
T Consensus 94 IggLe~v~~~L~e~VilPlr~pelF~~g~L-l~p~kGiLL~GPpG~GKTmlAKA~Akea--------ga~fInv~~s~lt 164 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPELFAKGKL-LRPPKGILLYGPPGTGKTMLAKAIAKEA--------GANFINVSVSNLT 164 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhhhccccc-ccCCccceecCCCCchHHHHHHHHHHHc--------CCCcceeeccccc
Confidence 4556666666665553211 1111 3456789999999999999999998873 2478888877662
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q psy1694 153 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190 (247)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~ 190 (247)
. ..+++-+ .+-..+...-.+-..+++|+||+|.+
T Consensus 165 ~---KWfgE~e-Klv~AvFslAsKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 165 S---KWFGEAQ-KLVKAVFSLASKLQPSIIFIDEVDSF 198 (386)
T ss_pred h---hhHHHHH-HHHHHHHhhhhhcCcceeehhhHHHH
Confidence 2 2222111 11222222222334589999999876
No 217
>KOG0741|consensus
Probab=98.58 E-value=6.5e-08 Score=90.45 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=62.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHH---HHHhCC----CeE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS---NVTACD----RAI 181 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~---~l~~~~----~~v 181 (247)
.++|+||||||||++||.|.+.|..+ .|- -+|-+++ ...++++.++.+.+.+.. ..+++. --+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAr------ePK-IVNGPeI---L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHI 327 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAR------EPK-IVNGPEI---LNKYVGESEENVRKLFADAEEEQRRLGANSGLHI 327 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCC------CCc-ccCcHHH---HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceE
Confidence 58999999999999999999997652 121 1222221 112333223222222221 112222 189
Q ss_pred EEEeCCCCC-------------ChhhHHHHHhhcccCcccccc-cCCceEEEEEeCCChHHHHHH
Q psy1694 182 FIFDEVDKF-------------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 182 lilDEiek~-------------~~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~tSN~g~~~i~~~ 232 (247)
+||||+|.+ +..+.+.||.-||. | ...|..+|..||. .+-|.+.
T Consensus 328 IIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG------VeqLNNILVIGMTNR-~DlIDEA 385 (744)
T KOG0741|consen 328 IIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG------VEQLNNILVIGMTNR-KDLIDEA 385 (744)
T ss_pred EEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc------HHhhhcEEEEeccCc-hhhHHHH
Confidence 999999764 33567777766654 3 4568888988887 3334433
No 218
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=5e-07 Score=84.75 Aligned_cols=103 Identities=9% Similarity=0.148 Sum_probs=63.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil 184 (247)
.++|+||+|+|||++++++++.+.. .+ ..++.+....+ ...+...+. ..+.... ...++++|
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~---~~--~~v~yi~~~~f-------~~~~~~~l~~~~~~~f~~~~--~~~dvLiI 208 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE---SG--GKILYVRSELF-------TEHLVSAIRSGEMQRFRQFY--RNVDALFI 208 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH---cC--CCEEEeeHHHH-------HHHHHHHHhcchHHHHHHHc--ccCCEEEE
Confidence 4789999999999999999999765 33 23344433221 111111111 1122222 23479999
Q ss_pred eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694 185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~ 231 (247)
||++.+.. ..+..+...++.... .+..+|+|||..+.++..
T Consensus 209 DDiq~l~~k~~~qeelf~l~N~l~~------~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 209 EDIEVFSGKGATQEEFFHTFNSLHT------EGKLIVISSTCAPQDLKA 251 (445)
T ss_pred cchhhhcCChhhHHHHHHHHHHHHH------CCCcEEEecCCCHHHHhh
Confidence 99999864 456666666553210 234689999998887764
No 219
>KOG0730|consensus
Probab=98.57 E-value=1.9e-07 Score=89.25 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=88.3
Q ss_pred cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|....+..+...+.--+..+. ...-|..++++||||||||.+++++|+.. + ..+..++++++...
T Consensus 186 ~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-~-------a~~~~i~~peli~k 257 (693)
T KOG0730|consen 186 IGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-G-------AFLFLINGPELISK 257 (693)
T ss_pred cchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-C-------ceeEecccHHHHHh
Confidence 44455555555555543222221 12346679999999999999999999882 2 34566666655332
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh----------hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.. ++++..+...+....+....+++++||++.+-+ .+...|+.+++.-. .-++.|+|.++|.
T Consensus 258 ~~---gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----~~~~vivl~atnr 329 (693)
T KOG0730|consen 258 FP---GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----PDAKVIVLAATNR 329 (693)
T ss_pred cc---cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----CcCcEEEEEecCC
Confidence 22 224444555555544455479999999999865 24555666666522 2378888888887
Q ss_pred ChHHHHHHHHHHHHcCcccccC
Q psy1694 225 GGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 225 g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
. +.|... .++|||..++
T Consensus 330 p-~sld~a----lRRgRfd~ev 346 (693)
T KOG0730|consen 330 P-DSLDPA----LRRGRFDREV 346 (693)
T ss_pred c-cccChh----hhcCCCccee
Confidence 3 333322 2227776553
No 220
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.56 E-value=9.5e-08 Score=92.86 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=39.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 75 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+-+.++||..+++.+..++... . .++|+||||+|||++|+++++.+..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~------~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----R------HVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----C------eEEEECCCCCcHHHHHHHHHHHcCh
Confidence 45556999999999887766532 2 5789999999999999999998653
No 221
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.54 E-value=2.8e-07 Score=84.33 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=51.6
Q ss_pred HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc--cc-ccccC---CceEEEEEeCCChHHHHHHHHHH
Q psy1694 172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA--VY-NQISF---QNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~--~~-~~~~~---~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
+.+.++.++|+++||+..++..+++.|+.+++++. ++ +++.+ .+.++|.|.|-...+|...+++.
T Consensus 138 GlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDR 208 (423)
T COG1239 138 GLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDR 208 (423)
T ss_pred cchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhh
Confidence 56678889999999999999999999999999973 22 34433 37889999998866777666665
No 222
>KOG0743|consensus
Probab=98.52 E-value=6.1e-07 Score=82.67 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhhhccc---CCCCC--eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694 83 QELAISHICGALKNHFQNRY---HNTKA--LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 157 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~---~~~kp--l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~ 157 (247)
.+...+.+.+-+..+..++. ..++| ...||+||||||||++..++|++|-= .......++.
T Consensus 206 d~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y--------dIydLeLt~v------ 271 (457)
T KOG0743|consen 206 DPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY--------DIYDLELTEV------ 271 (457)
T ss_pred ChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC--------ceEEeeeccc------
Confidence 34445555555555543321 12233 36899999999999999999998521 1222222221
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC------------------hhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 158 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------------KGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 158 ~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~------------------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
+ -...+...+ ....+.+||+|.+||-.- .-.+.-||.++|.= ++.--..-|+|
T Consensus 272 --~-~n~dLr~LL---~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl---wSscg~ERIiv 342 (457)
T KOG0743|consen 272 --K-LDSDLRHLL---LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL---WSSCGDERIIV 342 (457)
T ss_pred --c-CcHHHHHHH---HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccc---cccCCCceEEE
Confidence 1 011123222 234556999999997641 12355677777641 11111234999
Q ss_pred EEeCC
Q psy1694 220 FLSNS 224 (247)
Q Consensus 220 ~tSN~ 224 (247)
||||.
T Consensus 343 FTTNh 347 (457)
T KOG0743|consen 343 FTTNH 347 (457)
T ss_pred EecCC
Confidence 99997
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.6e-07 Score=87.99 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=82.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|.+..++++.+.+.+.-.++. +|.|+||+|||.++..+|...-. ... ....+..+++.+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNP--------vLiGEpGVGKTAIvEGLA~rIv~---g~VP~~L~~~~i~sLD~g~Lv- 238 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNP--------VLVGEPGVGKTAIVEGLAQRIVN---GDVPESLKDKRIYSLDLGSLV- 238 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCC--------eEecCCCCCHHHHHHHHHHHHhc---CCCCHHHcCCEEEEecHHHHh-
Confidence 499999999999998887654444 78999999999999999998765 222 2233444444432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcc
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~ 207 (247)
.-.++-+.|++.++..+ ..++..+.-++||||++.+ ..+.-|.|+|.|..+.+
T Consensus 239 AGakyRGeFEeRlk~vl-~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL 300 (786)
T COG0542 239 AGAKYRGEFEERLKAVL-KEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL 300 (786)
T ss_pred ccccccCcHHHHHHHHH-HHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe
Confidence 12334455666666555 3456666899999999765 24588999999999863
No 224
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=6.8e-07 Score=69.54 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=53.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHH-HHHHHHHHHHHhCCCeEEEEeCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWIISNVTACDRAIFIFDEV 187 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~-~l~~~~~~~l~~~~~~vlilDEi 187 (247)
++++.||.|+|||++++.+++.+.. ..+.+.+++...... . ... .+...+.+.. .....++||||+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~------~~~~~yi~~~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~i~iDEi 70 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLP------PENILYINFDDPRDR-----R-LADPDLLEYFLELI-KPGKKYIFIDEI 70 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc------cccceeeccCCHHHH-----H-HhhhhhHHHHHHhh-ccCCcEEEEehh
Confidence 6789999999999999999888652 235566655432110 0 000 0112222221 125689999999
Q ss_pred CCCChhhHHHHHhhcccC
Q psy1694 188 DKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 188 ek~~~~~~~~Ll~~Le~~ 205 (247)
+++| +....+..+.+.+
T Consensus 71 q~~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 71 QYLP-DWEDALKFLVDNG 87 (128)
T ss_pred hhhc-cHHHHHHHHHHhc
Confidence 9998 5778888888864
No 225
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.51 E-value=2.2e-06 Score=73.74 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|-+..++.+.+-..+++.+. .+.++|++|+.|||||++.+++...... .|. ..|.+.-..+
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~---~GL--RlIev~k~~L------- 91 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGL----PANNVLLWGARGTGKSSLVKALLNEYAD---QGL--RLIEVSKEDL------- 91 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhh---cCc--eEEEECHHHh-------
Confidence 38999999999998888887543 2346899999999999999999988655 542 2344432111
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 159 VSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
. .+. .+...+...+ +-|||+|+..=-. ..-...|+.+||.+- . ..-.|+++..|||.
T Consensus 92 -~----~l~-~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-e--~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 -G----DLP-ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-E--ARPDNVLIYATSNR 150 (249)
T ss_pred -c----cHH-HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-c--cCCCcEEEEEecch
Confidence 1 111 2334455444 4788899874222 344566777777542 1 12368999999996
No 226
>KOG1969|consensus
Probab=98.51 E-value=6.4e-07 Score=86.54 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=56.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh---CCCeEEEEe
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA---CDRAIFIFD 185 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~---~~~~vlilD 185 (247)
.+||+||||.|||++|..+|++ .|. ..+.+|.+. .......++.+.+.+...-.. .....+|+|
T Consensus 328 ilLL~GppGlGKTTLAHViAkq------aGY--sVvEINASD-----eRt~~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQ------AGY--SVVEINASD-----ERTAPMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHh------cCc--eEEEecccc-----cccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 6899999999999999999998 222 346666543 222233444444444321111 123778999
Q ss_pred CCCCCChhhHHHHHhhcc
Q psy1694 186 EVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 186 Eiek~~~~~~~~Ll~~Le 203 (247)
|||-.|+...+.|+..+.
T Consensus 395 EIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 395 EIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cccCCcHHHHHHHHHHHH
Confidence 999999999999999988
No 227
>KOG2035|consensus
Probab=98.46 E-value=1.3e-06 Score=76.09 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=69.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCC------------Cc-ceeeec--ccccC-CCCChHHHHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT------------SR-FVHKFN--SRIHF-PNENHVSLYRLQLTNWIIS 172 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~------------~~-~v~~~~--~~l~~-~~~~~v~~~~~~l~~~~~~ 172 (247)
.++++||+|+||.+.+-++-+++|+ .|.. ++ -+.++. |..|- -.|+..|.|.......+..
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG---~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellK 112 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYG---VGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLK 112 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhC---CCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHH
Confidence 6899999999999999999999998 4431 11 122221 11110 0122223232211111111
Q ss_pred HH---------HhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 173 NV---------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 173 ~l---------~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
.+ .+.++.+++|.|+|++..+.|.+|.+.||.+. .++-+|+.+|..+..|
T Consensus 113 evAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-------~~~RlIl~cns~SriI 171 (351)
T KOG2035|consen 113 EVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-------SNCRLILVCNSTSRII 171 (351)
T ss_pred HHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-------cCceEEEEecCcccch
Confidence 11 12356999999999999999999999999975 5666777777655443
No 228
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.46 E-value=1e-06 Score=66.53 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=58.5
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK 189 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek 189 (247)
+.|+||||+|||++|+.|++.+..+........++..+. ... ...+ -....++++||+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~------~~~-----------~w~g---Y~~q~vvi~DD~~~ 60 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP------GDK-----------FWDG---YQGQPVVIIDDFGQ 60 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC------ccc-----------hhhc---cCCCcEEEEeecCc
Confidence 468999999999999999998775210001112111111 111 1111 11347999999988
Q ss_pred CChh----hHHHHHhhcccCccccc--------ccCCceEEEEEeCC
Q psy1694 190 FPKG----LLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS 224 (247)
Q Consensus 190 ~~~~----~~~~Ll~~Le~~~~~~~--------~~~~~~ifI~tSN~ 224 (247)
.... ....++++++..++.-. ..+.-.++|.|||.
T Consensus 61 ~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 61 DNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 8754 67778888888664321 23444688999884
No 229
>PRK06620 hypothetical protein; Validated
Probab=98.45 E-value=1.2e-06 Score=74.39 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++|+||+|+|||++++++++.
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999998665
No 230
>KOG0742|consensus
Probab=98.43 E-value=1.7e-06 Score=79.02 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=55.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
+++|+||||||||+.|+-||.+ .|.+ |-.+.-+..---....|.... .+-+|-. ....+=++||||+|
T Consensus 386 NilfyGPPGTGKTm~ArelAr~------SGlD--YA~mTGGDVAPlG~qaVTkiH-~lFDWak---kS~rGLllFIDEAD 453 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARH------SGLD--YAIMTGGDVAPLGAQAVTKIH-KLFDWAK---KSRRGLLLFIDEAD 453 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhh------cCCc--eehhcCCCccccchHHHHHHH-HHHHHHh---hcccceEEEehhhH
Confidence 6999999999999999999988 3321 111111111000011222111 1222221 22344677899995
Q ss_pred ---------CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 189 ---------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 189 ---------k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
+|+++....|--+|=. .+...++.+.++.||..++
T Consensus 454 AFLceRnktymSEaqRsaLNAlLfR----TGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 454 AFLCERNKTYMSEAQRSALNALLFR----TGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred HHHHHhchhhhcHHHHHHHHHHHHH----hcccccceEEEeccCCccc
Confidence 4566554444433321 2334477788888998654
No 231
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.41 E-value=3.9e-07 Score=83.20 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=59.4
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--ecccccCCCCChHHHHH---HHHHHHHHHHHHhCC
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--FNSRIHFPNENHVSLYR---LQLTNWIISNVTACD 178 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--~~~~l~~~~~~~v~~~~---~~l~~~~~~~l~~~~ 178 (247)
...|..+.|+|++|+|||++.-..-+.+-. +. +.-+|+ ++.+++.. ...++ .-+.... ..+.. .
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~---~~--k~R~HFh~Fm~~vh~~----l~~~~~~~~~l~~va-~~l~~-~ 127 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI---KR--KRRVHFHEFMLDVHSR----LHQLRGQDDPLPQVA-DELAK-E 127 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc---cc--cccccccHHHHHHHHH----HHHHhCCCccHHHHH-HHHHh-c
Confidence 345678999999999999999999776533 11 222232 22222100 00000 0011111 11111 2
Q ss_pred CeEEEEeCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 179 RAIFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 179 ~~vlilDEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
..+|.|||++--+.+ ++..|+..|=+ +.+++|+|||..++++
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~~---------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALFK---------RGVVLVATSNRPPEDL 172 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHHH---------CCCEEEecCCCChHHH
Confidence 359999999766543 44555544433 5679999999988743
No 232
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.2e-06 Score=76.65 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 142 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~ 142 (247)
.+.+-..|++.++||..|.+.+.-++++.+.... +.-.|.++|..||+|+|||.+||.+|+.. ..|
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~--------~aP 77 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA--------GAP 77 (444)
T ss_pred HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh--------CCC
Confidence 4566778999999999999999988886432111 12257789999999999999999999874 259
Q ss_pred ceeeeccc
Q psy1694 143 FVHKFNSR 150 (247)
Q Consensus 143 ~v~~~~~~ 150 (247)
|+.+-...
T Consensus 78 FiKVEATK 85 (444)
T COG1220 78 FIKVEATK 85 (444)
T ss_pred eEEEEeee
Confidence 98887543
No 233
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.32 E-value=6.4e-06 Score=76.18 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=64.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH-hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS-IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV 187 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~-l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEi 187 (247)
++++.||+|||||++|..++.. ... .| .|+. .+. .+. .+.....+.+ +..++|+|||+
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~---sG---~f~T--~a~-------Lf~----~L~~~~lg~v--~~~DlLI~DEv 269 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILI---SG---GTIT--VAK-------LFY----NISTRQIGLV--GRWDVVAFDEV 269 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHH---cC---CcCc--HHH-------HHH----HHHHHHHhhh--ccCCEEEEEcC
Confidence 7899999999999999999777 232 22 1111 111 111 1222222322 34589999999
Q ss_pred CCCCh----hhHHHHHhhcccCcccccc--cCCceEEEEEeCCC
Q psy1694 188 DKFPK----GLLDVIIPFIDHHAVYNQI--SFQNTIFLFLSNSG 225 (247)
Q Consensus 188 ek~~~----~~~~~Ll~~Le~~~~~~~~--~~~~~ifI~tSN~g 225 (247)
..+|. +..+.|+-.|+.+.+..+. -..++-++|.-|..
T Consensus 270 gylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 270 ATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred CCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 99764 4678899999999888764 23477788887774
No 234
>KOG0740|consensus
Probab=98.32 E-value=4.6e-06 Score=77.09 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=73.9
Q ss_pred cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+-|.+.+.+.+.+++.=-.. ..- +.-+..+|+.||||+|||+++++||-... ..|..+..+.+..-
T Consensus 155 i~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~--------atff~iSassLtsK 225 (428)
T KOG0740|consen 155 IAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESG--------ATFFNISASSLTSK 225 (428)
T ss_pred CcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhc--------ceEeeccHHHhhhh
Confidence 56677777776665531111 111 12233589999999999999999987732 35655555554222
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
..+. - +.+...+...-+....+|+|+||+|++=. -....|++..-- ....+ .+.++|.+|
T Consensus 226 ~~Ge---~-eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~---~s~~~-drvlvigaT 297 (428)
T KOG0740|consen 226 YVGE---S-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK---NSAPD-DRVLVIGAT 297 (428)
T ss_pred ccCh---H-HHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc---cCCCC-CeEEEEecC
Confidence 1221 1 22233343322333459999999977611 122223332221 11122 377788888
Q ss_pred CCChHHHHHHHHH
Q psy1694 223 NSGGTEIMNTFLE 235 (247)
Q Consensus 223 N~g~~~i~~~~~~ 235 (247)
|.. .++.+.+..
T Consensus 298 N~P-~e~Dea~~R 309 (428)
T KOG0740|consen 298 NRP-WELDEAARR 309 (428)
T ss_pred CCc-hHHHHHHHH
Confidence 874 344444443
No 235
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=2.7e-05 Score=71.79 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=70.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhccc-cCCCCCcceeeecc------------c-ccCCCCChHHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNS------------R-IHFPNENHVSLYRLQLTNWI 170 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~-~~g~~~~~v~~~~~------------~-l~~~~~~~v~~~~~~l~~~~ 170 (247)
.+|.+++|.||+|+|||+++..+|..+.... ..+....++..++. + +..|. .....+. .+...+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-~~~~~~~-~l~~~L 249 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-KAIESFK-DLKEEI 249 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-EeeCcHH-HHHHHH
Confidence 3577899999999999999999998754210 01222223333331 1 11110 1111111 122222
Q ss_pred HHHHHhCCCeEEEEeCCCCCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 171 ISNVTACDRAIFIFDEVDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 171 ~~~l~~~~~~vlilDEiek~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
. ......++++|++++++.+. +..+..+++... .-...++++-++.+.+++.+..-.+
T Consensus 250 ~---~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 250 T---QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred H---HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1 12356899999999998653 356666666421 0125678888889988888655443
No 236
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.27 E-value=9.5e-06 Score=70.45 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=51.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-e------------cccccCCCCCh-HHHHHHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-F------------NSRIHFPNENH-VSLYRLQLTNWIISNV 174 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~------------~~~l~~~~~~~-v~~~~~~l~~~~~~~l 174 (247)
.++++||+|+|||++++.+++.+.. ... ....+ + +..+..+..+. .......+...+....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~---~~~--~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQ---ERV--VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC---CCe--EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999887542 110 00000 0 11111111111 0111122333343334
Q ss_pred HhCCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694 175 TACDRAIFIFDEVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le 203 (247)
......++++||++.+++...+.|..+.+
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 44556899999999999888777765443
No 237
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=6.4e-06 Score=80.20 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=38.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.||...++.+...+........ ..-.++|+||+|+|||++++++|+.+-
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~---~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENA---PKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccC---CCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 599999999888877765432111 112578999999999999999998753
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=98.26 E-value=2.9e-05 Score=70.33 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.+++|.|++|+|||+++..+|..+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999987654
No 239
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=5.1e-06 Score=67.62 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=30.8
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++|.+..++.+...+. . .. ...|..++++|++|+|||++.+.+.+.+-.
T Consensus 2 fvgR~~e~~~l~~~l~-~-~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A-AQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G-TS---S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H-HH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5788888877776664 1 11 234557899999999999999988887654
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.21 E-value=1.8e-05 Score=66.37 Aligned_cols=117 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHH---HH-----------------HHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS---LY-----------------RLQL 166 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~---~~-----------------~~~l 166 (247)
|.+++|.||+|+|||+++-.||..+-. .+..-.++..+..+ .+.+. .| .+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R-----~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYR-----IGAVEQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSS-----THHHHHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCC-----ccHHHHHHHHHHHhccccchhhcchhhHHHH
Confidence 568999999999999999999988654 33332333333211 11110 01 0111
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHHc
Q psy1694 167 TNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 239 (247)
Q Consensus 167 ~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~ 239 (247)
...+ +........++++|-.++.+. .....|..+++.- .-.+.++++.++.+.+.+. .+.++.+.
T Consensus 73 ~~~l-~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~-~~~~~~~~ 139 (196)
T PF00448_consen 73 REAL-EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLE-QALAFYEA 139 (196)
T ss_dssp HHHH-HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHH-HHHHHHHH
T ss_pred HHHH-HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHH-HHHHHhhc
Confidence 1222 233445568999999999884 4455555544432 1146788888899988887 44555553
No 241
>KOG0741|consensus
Probab=98.20 E-value=1.9e-05 Score=74.32 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=61.0
Q ss_pred CCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--cCCCCChHHHHHHHHHHHHHHHHHh---CC
Q psy1694 105 TKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI--HFPNENHVSLYRLQLTNWIISNVTA---CD 178 (247)
Q Consensus 105 ~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l--~~~~~~~v~~~~~~l~~~~~~~l~~---~~ 178 (247)
..|++ ++|+||||+|||.+|..+|.. + +=|||.+-.++- .+++ +.. -..+.+.+.. .+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S------~FPFvKiiSpe~miG~sE------saK--c~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS--S------DFPFVKIISPEDMIGLSE------SAK--CAHIKKIFEDAYKSP 598 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh--c------CCCeEEEeChHHccCccH------HHH--HHHHHHHHHHhhcCc
Confidence 45665 999999999999999999665 3 358888754321 1111 111 1223333443 34
Q ss_pred CeEEEEeCCCCCC----------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 179 RAIFIFDEVDKFP----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 179 ~~vlilDEiek~~----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
-+++++|++|++= .-++++|+-+|.+.+. -.+-.+|+.|..
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp-----kg~kLli~~TTS 649 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP-----KGRKLLIFGTTS 649 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC-----CCceEEEEeccc
Confidence 5999999998872 2467778878877541 123455655543
No 242
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.20 E-value=8.6e-06 Score=73.91 Aligned_cols=80 Identities=24% Similarity=0.191 Sum_probs=51.7
Q ss_pred hcCChHHHHHHH---HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAISHI---CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~~l---~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||..|.+.. ++.++..--. ...+||.||||||||.+|-++|+.|-. +-||+.+..+++...+
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~K~a------Gr~iLiaGppGtGKTAlA~~ia~eLG~------~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEGKIA------GRAILIAGPPGTGKTALAMAIAKELGE------DVPFVSISGSEIYSSE 92 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT--T------T-EEEEEE-TTSSHHHHHHHHHHHCTT------TS-EEEEEGGGG-BTT
T ss_pred cccChHHHHHHHHHHHHHHhccccc------CcEEEEeCCCCCCchHHHHHHHHHhCC------CCCeeEcccceeeecc
Confidence 699999988754 3444432212 227899999999999999999999543 6799999999986554
Q ss_pred CChHHHHHHHHHHHHHHHHHhCC
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACD 178 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~ 178 (247)
.+. .+.+.++++++-
T Consensus 93 ~kK--------TE~L~qa~RraI 107 (398)
T PF06068_consen 93 VKK--------TEALTQAFRRAI 107 (398)
T ss_dssp C-H--------HHHHHHHHHCSE
T ss_pred cCc--------hHHHHHHHHHhh
Confidence 433 233556666653
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=2.9e-05 Score=62.73 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++-+.++|+||+|||+++..+++.|-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3456899999999999999999999765
No 244
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.13 E-value=9.3e-06 Score=73.11 Aligned_cols=66 Identities=27% Similarity=0.196 Sum_probs=49.1
Q ss_pred hcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||..|.+. +++.++..-... ..+|+.||||||||.+|-.||+.|-+ +-||+.++.+++...+
T Consensus 40 G~VGQ~~AReAaGvIv~mik~gk~aG------rgiLi~GppgTGKTAlA~gIa~eLG~------dvPF~~isgsEiYS~E 107 (450)
T COG1224 40 GLVGQEEAREAAGVIVKMIKQGKMAG------RGILIVGPPGTGKTALAMGIARELGE------DVPFVAISGSEIYSLE 107 (450)
T ss_pred cccchHHHHHhhhHHHHHHHhCcccc------cEEEEECCCCCcHHHHHHHHHHHhCC------CCCceeeccceeeeec
Confidence 58999998874 444444322222 26899999999999999999999643 6799999988875444
Q ss_pred C
Q psy1694 156 E 156 (247)
Q Consensus 156 ~ 156 (247)
.
T Consensus 108 ~ 108 (450)
T COG1224 108 V 108 (450)
T ss_pred c
Confidence 3
No 245
>PRK09087 hypothetical protein; Validated
Probab=98.12 E-value=1.3e-05 Score=68.67 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=51.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.+.|+||+|+|||++++++++.. + ...++... +. ......+ ..++|++||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~---------~~~i~~~~-----------~~----~~~~~~~---~~~~l~iDDi~ 97 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-D---------ALLIHPNE-----------IG----SDAANAA---AEGPVLIEDID 97 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-C---------CEEecHHH-----------cc----hHHHHhh---hcCeEEEECCC
Confidence 37899999999999999987652 2 11121111 11 1111111 12689999999
Q ss_pred CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694 189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~ 231 (247)
.++. .+..|...+..-. -++..+|+||+..+..+..
T Consensus 98 ~~~~-~~~~lf~l~n~~~------~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 98 AGGF-DETGLFHLINSVR------QAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred CCCC-CHHHHHHHHHHHH------hCCCeEEEECCCChHHhcc
Confidence 8753 3444555544311 0234688888887776543
No 246
>PRK10536 hypothetical protein; Provisional
Probab=98.12 E-value=4.3e-05 Score=66.52 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 180 AIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 180 ~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
++||+||++.+++.....++.-+.++.
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR~g~~s 204 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTRLGENV 204 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhhcCCCC
Confidence 899999999999999999998887653
No 247
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.10 E-value=9.1e-06 Score=71.09 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
-++++.+.+.... +...++.++|++|+|||++|+.+++.
T Consensus 4 ~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 4 EIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccc
Confidence 3455555554322 23347899999999999999999876
No 248
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.09 E-value=3.6e-05 Score=66.18 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=51.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.-.+.||+|||||++.+.+|+.+-. +++.++|++... + ..+.+.+.+.... +.-+.|||++
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~--------~~~vfnc~~~~~--------~-~~l~ril~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGR--------FVVVFNCSEQMD--------Y-QSLSRILKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT----------EEEEETTSSS---------H-HHHHHHHHHHHHH--T-EEEEETCC
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCC--------eEEEeccccccc--------H-HHHHHHHHHHhhc--Cchhhhhhhh
Confidence 4578999999999999999998533 677888876311 2 1344555565544 6788899999
Q ss_pred CCChhhHHHHHhhc
Q psy1694 189 KFPKGLLDVIIPFI 202 (247)
Q Consensus 189 k~~~~~~~~Ll~~L 202 (247)
+++.+++..+-..+
T Consensus 95 rl~~~vLS~i~~~i 108 (231)
T PF12774_consen 95 RLSEEVLSVISQQI 108 (231)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 99997766654433
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=1.2e-05 Score=63.63 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEeecCCChHHHHHHHHHHHhhc
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+++.||||+|||+++..++..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999888643
No 250
>PHA00729 NTP-binding motif containing protein
Probab=98.03 E-value=5.5e-05 Score=64.67 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..++++|+||||||++|.+|++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999864
No 251
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.03 E-value=6.3e-05 Score=62.94 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=48.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH---HHHHHHHH----------
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT---NWIISNVT---------- 175 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~---~~~~~~l~---------- 175 (247)
..++.||+|||||++.+.+.+.+.. .+ .. |....++ ........+... ..+...+.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~---~g--~~-v~~~apT-----~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEA---AG--KR-VIGLAPT-----NKAAKELREKTGIEAQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHH---TT-----EEEEESS-----HHHHHHHHHHHTS-EEEHHHHTTEECCEECCSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHh---CC--Ce-EEEECCc-----HHHHHHHHHhhCcchhhHHHHHhcCCccccccc
Confidence 5678999999999999999888654 32 11 2221111 111111111000 00000000
Q ss_pred --hCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 176 --ACDRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 176 --~~~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
..+..++|+||+..++...+..|+.....
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 12347999999999999999999998887
No 252
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=9.3e-05 Score=63.76 Aligned_cols=106 Identities=8% Similarity=0.135 Sum_probs=67.7
Q ss_pred EEEEeecCC-ChHHHHHHHHHHHhhccccCCC---CCcceeeecccccC-C--CCChHHHHHHHHHHHHHHHHHhCCCeE
Q psy1694 109 AISLHGLPG-TGKNYVTDFIVSSIFKRYKDKG---TSRFVHKFNSRIHF-P--NENHVSLYRLQLTNWIISNVTACDRAI 181 (247)
Q Consensus 109 ~lll~G~~G-tGKt~~A~~la~~l~~~~~~g~---~~~~v~~~~~~l~~-~--~~~~v~~~~~~l~~~~~~~l~~~~~~v 181 (247)
..+|.|+.+ +||..++..+++.+++ .+. ..|-++...++-.. . ..-.+++-++ +.+.+...-...++.|
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~---~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIRe-L~~~l~~~p~~g~~KV 92 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFK---NSIPLENNPDYHFIARETSATSNAKNISIEQIRK-LQDFLSKTSAISGYKV 92 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhc---cCcccCCCCCEEEEeccccccccCCcccHHHHHH-HHHHHhhCcccCCcEE
Confidence 579999998 9999999999999876 321 11222222111100 0 0111222221 2222211112345699
Q ss_pred EEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 182 FIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 182 lilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+++|++|+|.....++||+.|||++ .+++||++|+..
T Consensus 93 iII~~ae~mt~~AANALLKtLEEPP-------~~t~fILit~~~ 129 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILEDAP-------KNSYIFLITSRA 129 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcCCC-------CCeEEEEEeCCh
Confidence 9999999999999999999999987 788999887653
No 253
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.01 E-value=7.7e-05 Score=66.18 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--CCCCccee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVH 145 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--g~~~~~v~ 145 (247)
+.+++..-...+.+|.+.|.+.+ +.+...+..|. ..++-+++++|++|.|||++++...+. +..... +..-|.+.
T Consensus 24 ~~eRI~~i~~~rWIgY~~A~~~L-~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~ 100 (302)
T PF05621_consen 24 DEERIAYIRADRWIGYPRAKEAL-DRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVY 100 (302)
T ss_pred HHHHHHHHhcCCeecCHHHHHHH-HHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEE
Confidence 34455655666899999887755 56666666665 444447999999999999999999776 331111 11124444
Q ss_pred eecc--------------cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q psy1694 146 KFNS--------------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190 (247)
Q Consensus 146 ~~~~--------------~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~ 190 (247)
+-++ .+..|....-. ...+.......++.+.-.++||||++.+
T Consensus 101 vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~--~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 101 VQMPPEPDERRFYSAILEALGAPYRPRDR--VAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred EecCCCCChHHHHHHHHHHhCcccCCCCC--HHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 4331 11111111101 1123445556778888899999999886
No 254
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.01 E-value=3.6e-05 Score=71.07 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
++..+.|.+... ...+...+...+..+.. .++|+||+|.|||++++++++.... .+....++.+....+
T Consensus 86 FdnFv~g~~N~~--A~aa~~~va~~~g~~~n--plfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se~f---- 154 (408)
T COG0593 86 FDNFVVGPSNRL--AYAAAKAVAENPGGAYN--PLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSEDF---- 154 (408)
T ss_pred hhheeeCCchHH--HHHHHHHHHhccCCcCC--cEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHHHH----
Confidence 344577755322 22233334343331223 3699999999999999999999766 443333444432221
Q ss_pred CChHHHHHHHHH----HHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 156 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 156 ~~~v~~~~~~l~----~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
...+...+. ..++... .-.+++||+++.+.. ..|..+...+..=. +..+ -+++||...+.++
T Consensus 155 ---~~~~v~a~~~~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-----~~~k-qIvltsdr~P~~l 222 (408)
T COG0593 155 ---TNDFVKALRDNEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-----ENGK-QIVLTSDRPPKEL 222 (408)
T ss_pred ---HHHHHHHHHhhhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHH-----hcCC-EEEEEcCCCchhh
Confidence 111111111 1222222 347999999988754 33444444333211 1122 6899999999988
Q ss_pred HHH
Q psy1694 230 MNT 232 (247)
Q Consensus 230 ~~~ 232 (247)
+..
T Consensus 223 ~~~ 225 (408)
T COG0593 223 NGL 225 (408)
T ss_pred ccc
Confidence 744
No 255
>PRK04296 thymidine kinase; Provisional
Probab=97.98 E-value=4.7e-05 Score=63.38 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||+|+|||+.+..++..+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999888877544
No 256
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.98 E-value=1.3e-05 Score=77.52 Aligned_cols=91 Identities=8% Similarity=0.067 Sum_probs=62.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH--HHHHHHH----HHHHHHHhCCCeEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL--YRLQLTN----WIISNVTACDRAIF 182 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~--~~~~l~~----~~~~~l~~~~~~vl 182 (247)
.+++.|+.||||+++++.++..|-. ..||+....+.- ....++. ....+.. .-.+.+..+.++||
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~------~~p~r~~p~~~t---~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL 97 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPA------GTPLRRLPPGIA---DDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVL 97 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCC------CCCcccCCCCCc---HHHccCCchHHhHhhcCCcCCCCCceeeccCCEE
Confidence 5899999999999999999887532 246665543211 1111111 0110100 11256678888999
Q ss_pred EEeCCCCCChhhHHHHHhhcccCccc
Q psy1694 183 IFDEVDKFPKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 183 ilDEiek~~~~~~~~Ll~~Le~~~~~ 208 (247)
|+||++.+++.+++.|+..|+++.++
T Consensus 98 ~lDe~n~~~~~~~~aLleame~G~vt 123 (584)
T PRK13406 98 VLAMAERLEPGTAARLAAALDTGEVR 123 (584)
T ss_pred EecCcccCCHHHHHHHHHHHhCCcEE
Confidence 99999999999999999999998754
No 257
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00025 Score=65.41 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHH-
Q psy1694 85 LAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY- 162 (247)
Q Consensus 85 ~a~~~l~~~l~~~~~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~- 162 (247)
...+.+.+.+......+. ...+|..+.|.||+|+|||+++..||..+.. .+...-++..+... .+.+..+
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~R-----iaAvEQLk 289 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-----IGTVQQLQ 289 (436)
T ss_pred HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcc-----hHHHHHHH
Confidence 444555555544443221 1245678999999999999999999988765 44322222222110 0011101
Q ss_pred ---------------HHHHHHHHHHHHHh-CCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 163 ---------------RLQLTNWIISNVTA-CDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 163 ---------------~~~l~~~~~~~l~~-~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
...+...+. .+.. ....++|+|-.++.+. .....|.++++... -...++++-++.
T Consensus 290 ~yae~lgipv~v~~d~~~L~~aL~-~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~------PdevlLVLsATt 362 (436)
T PRK11889 290 DYVKTIGFEVIAVRDEAAMTRALT-YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASM 362 (436)
T ss_pred HHhhhcCCcEEecCCHHHHHHHHH-HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC------CCeEEEEECCcc
Confidence 112222232 2222 3468999999999874 45667777776422 123455555567
Q ss_pred ChHHHHHHHHH
Q psy1694 225 GGTEIMNTFLE 235 (247)
Q Consensus 225 g~~~i~~~~~~ 235 (247)
+.+++.+.+..
T Consensus 363 k~~d~~~i~~~ 373 (436)
T PRK11889 363 KSKDMIEIITN 373 (436)
T ss_pred ChHHHHHHHHH
Confidence 77776655433
No 258
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.97 E-value=2.2e-05 Score=66.25 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred CeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 179 RAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 179 ~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
.++||+||++.+.+.....++.-+.++
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEG 146 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCC
Confidence 389999999999999988888877764
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.95 E-value=8.1e-07 Score=80.29 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694 70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145 (247)
Q Consensus 70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~ 145 (247)
..|-+.+-..++|.+.++..+.=++-....... ..+...++||.|.||||||.+.+.+++. .+ + +-++.
T Consensus 16 ~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~-~p---r---~v~~~ 88 (331)
T PF00493_consen 16 DRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL-AP---R---SVYTS 88 (331)
T ss_dssp HCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--S---S---EEEEE
T ss_pred HHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh-CC---c---eEEEC
Confidence 345556666899977765444322211111110 0124567999999999999999988443 22 1 11111
Q ss_pred eecc---cccCC-CCChHHHHHHHHHHH--HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc------cC
Q psy1694 146 KFNS---RIHFP-NENHVSLYRLQLTNW--IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SF 213 (247)
Q Consensus 146 ~~~~---~l~~~-~~~~v~~~~~~l~~~--~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~------~~ 213 (247)
..-+ .+... .....+ .++ -.|.+-.+.+|++++||+|+|+.+..+.|..+||.+.+.... =-
T Consensus 89 g~~~s~~gLta~~~~d~~~------~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 89 GKGSSAAGLTASVSRDPVT------GEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CCGSTCCCCCEEECCCGGT------SSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred CCCcccCCccceecccccc------ceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccccc
Confidence 1000 00000 000000 001 014566788999999999999999999999999998754221 11
Q ss_pred CceEEEEEeCC
Q psy1694 214 QNTIFLFLSNS 224 (247)
Q Consensus 214 ~~~ifI~tSN~ 224 (247)
.++-++.++|-
T Consensus 163 ar~svlaa~NP 173 (331)
T PF00493_consen 163 ARCSVLAAANP 173 (331)
T ss_dssp ---EEEEEE--
T ss_pred chhhhHHHHhh
Confidence 24556666664
No 260
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.95 E-value=0.00012 Score=59.37 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc--------------c---------cCCCCChHHHHHH--
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR--------------I---------HFPNENHVSLYRL-- 164 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~--------------l---------~~~~~~~v~~~~~-- 164 (247)
+.+++++|.|||++|-.+|-...+ .|.+.-++.+.-+. + .+...........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence 455667799999999999877666 55443333332110 0 0000111111111
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCC-Chh--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 165 QLTNWIISNVTACDRAIFIFDEVDKF-PKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 165 ~l~~~~~~~l~~~~~~vlilDEiek~-~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
.........+....++++||||+..+ +.+ -.+.++.+|+.++ .+.-+|+|....++++-+.
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-------~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-------EDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence 11223344555667799999999655 322 2455777777765 6677899987777766543
No 261
>KOG0478|consensus
Probab=97.93 E-value=9.2e-06 Score=78.14 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=72.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcccCC------CCCeEEEEeecCCChHHHHHHHHHHHhhcc-ccCCCCCcce
Q psy1694 72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHN------TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRFV 144 (247)
Q Consensus 72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~------~kpl~lll~G~~GtGKt~~A~~la~~l~~~-~~~g~~~~~v 144 (247)
|...+...++|-++++.-+.=++-.. +..+. +.-.++||+|.||||||.+.+.+++.+-.. +-.|..+.-|
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSav 500 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAV 500 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchh
Confidence 34444446777776666554433221 11101 122579999999999999999998874210 0012222222
Q ss_pred eeecccccCCCCChHHHHHHHHHHHH--HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694 145 HKFNSRIHFPNENHVSLYRLQLTNWI--ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 145 ~~~~~~l~~~~~~~v~~~~~~l~~~~--~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~ 208 (247)
-.....-..++. +.++ .+++--.++|+-.|||+|||..+.++.|.++||..++.
T Consensus 501 GLTayVtrd~dt----------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvS 556 (804)
T KOG0478|consen 501 GLTAYVTKDPDT----------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLS 556 (804)
T ss_pred cceeeEEecCcc----------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhh
Confidence 221111111111 1111 13444567799999999999999999999999987643
No 262
>KOG0735|consensus
Probab=97.93 E-value=3.9e-05 Score=74.37 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=51.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
+++|.||+|+|||.+++++.+.+.. ....-+..++|+++++.. ....+..+.+.+.+.+..+| ++++||++|
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k----~~~~hv~~v~Cs~l~~~~---~e~iQk~l~~vfse~~~~~P-SiIvLDdld 504 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSK----DLIAHVEIVSCSTLDGSS---LEKIQKFLNNVFSEALWYAP-SIIVLDDLD 504 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhcc----ccceEEEEEechhccchh---HHHHHHHHHHHHHHHHhhCC-cEEEEcchh
Confidence 6899999999999999999998543 212223344588886543 34355555566655555544 899999998
Q ss_pred CC
Q psy1694 189 KF 190 (247)
Q Consensus 189 k~ 190 (247)
-+
T Consensus 505 ~l 506 (952)
T KOG0735|consen 505 CL 506 (952)
T ss_pred hh
Confidence 76
No 263
>PF05729 NACHT: NACHT domain
Probab=97.91 E-value=0.00014 Score=57.74 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+++++|++|+|||++++.++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.91 E-value=1.9e-05 Score=75.65 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=41.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|++.+++.+++.++..+..-. . +...++|+||||+|||++|+.|++.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~-~-~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE-E-KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC-C-CCceEEEecCCCCCchHHHHHHHHHH
Confidence 489999999999999976554433 2 23378999999999999999999975
No 265
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.88 E-value=6.7e-06 Score=67.31 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEeecCCChHHHHHHHHHHHhh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++++|+||+||||+.+.+.+.+-
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998873
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.85 E-value=0.0006 Score=63.90 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.+++|+|++|+|||+++..+|..+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 46888999999999999999999988654
No 267
>PHA02774 E1; Provisional
Probab=97.81 E-value=9.6e-05 Score=70.82 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694 89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN 168 (247)
Q Consensus 89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~ 168 (247)
....+++.++.+. | |...++|+||||||||++|-+|.+.+.+ . .-.| +|.... |
T Consensus 419 ~fl~~lk~~l~~~--P-Kknciv~~GPP~TGKS~fa~sL~~~L~G---~--vi~f--vN~~s~-F--------------- 472 (613)
T PHA02774 419 SFLTALKDFLKGI--P-KKNCLVIYGPPDTGKSMFCMSLIKFLKG---K--VISF--VNSKSH-F--------------- 472 (613)
T ss_pred HHHHHHHHHHhcC--C-cccEEEEECCCCCCHHHHHHHHHHHhCC---C--EEEE--EECccc-c---------------
Confidence 3445556565332 2 3337999999999999999999888643 1 1112 232111 0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccc------cccCCceEEEEEeCCChHH
Q psy1694 169 WIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 169 ~~~~~l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~------~~~~~~~ifI~tSN~g~~~ 228 (247)
++ +-+..+ .+++|||+-.- -..+...|+.+|+..++.- .+......+|.|||.....
T Consensus 473 wL-qpl~d~--ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~ 536 (613)
T PHA02774 473 WL-QPLADA--KIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKA 536 (613)
T ss_pred cc-chhccC--CEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCccc
Confidence 11 223333 69999999222 1344557788888764322 2345556799999976543
No 268
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.81 E-value=0.0011 Score=58.35 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhcc-----cCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 84 ELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~-----~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
....+.+.+.+...+... ....+|.++.|.||+|+|||+++..+|..+..
T Consensus 44 ~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 44 ELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred HHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 445556666666544321 11345678889999999999999999988644
No 269
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.81 E-value=6e-05 Score=63.18 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|.+.-++.+.+.+... ... .++++||.|+|||++.+.+.+.+
T Consensus 2 ~gR~~el~~l~~~l~~~--~~~------~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 2 FGREKELEKLKELLESG--PSQ------HILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -S-HHHHHHHHHCHHH----SS------EEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh--cCc------EEEEEcCCcCCHHHHHHHHHHHh
Confidence 56666666666555431 112 57889999999999999998875
No 270
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.0013 Score=61.26 Aligned_cols=120 Identities=11% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-------------cccCCCCChHHHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-------------RIHFPNENHVSLYRLQLTNWIIS 172 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-------------~l~~~~~~~v~~~~~~l~~~~~~ 172 (247)
++.+++|.||+|+|||+++..+|...... .|...-++..+.. ....|... .. .. ..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~-~~----~~-~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-VK----DI-KKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCeee-hH----HH-HHHHH
Confidence 45678899999999999999999764220 2221112222110 00000000 00 01 12233
Q ss_pred HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.+......+|++|=...++. ...+.|..+++... ..+....++++-++.+.+++.+....+
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~---~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc---CCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 34445668999998888763 45556655554310 001235678888888888887665433
No 271
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.81 E-value=2.3e-05 Score=66.79 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee--eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEE
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH--KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF 182 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~--~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vl 182 (247)
..|..++|+|+||+|||++|+.++...+--...+ +..... .+......+.+...+.+.+.+. .+. ....++.+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~-~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~-~~~--~~~~~ydtV 85 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDM-SSKVLIGDENVDIADHDDMPPIQAMVEFYV-MQN--IQAVKYDNI 85 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCCCEEEeccc-cchhccCCCCCceeecCCCCCHHHHHHHHH-HHH--hccccCCEE
Confidence 3466799999999999999999964211100011 000000 0011111222333343433332 111 123567999
Q ss_pred EEeCCCCCChhhHHHH
Q psy1694 183 IFDEVDKFPKGLLDVI 198 (247)
Q Consensus 183 ilDEiek~~~~~~~~L 198 (247)
|+|+++.+...+...+
T Consensus 86 VIDsI~~l~~~~~~~~ 101 (220)
T TIGR01618 86 VIDNISALQNLWLENI 101 (220)
T ss_pred EEecHHHHHHHHHHHH
Confidence 9999988765443333
No 272
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00059 Score=58.70 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++|-+...+.+.+-.++++.+.. ..++|++|.-|||||.+.+++.+.... ++. ..|.++-..+.
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~---~gl--rLVEV~k~dl~------- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYAD---EGL--RLVEVDKEDLA------- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHh---cCC--eEEEEcHHHHh-------
Confidence 88988888888887777765432 235899999999999999999888655 443 36666533321
Q ss_pred HHHHHHHHHHHHHHHHhCCC-eEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 160 SLYRLQLTNWIISNVTACDR-AIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 160 ~~~~~~l~~~~~~~l~~~~~-~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.+. .+.+.++..+. -|+|.|+..--+ ......|+.+||.+- + ..-.|++|-.|||.
T Consensus 126 -----~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-e--~rP~NVl~YATSNR 183 (287)
T COG2607 126 -----TLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-E--GRPANVLFYATSNR 183 (287)
T ss_pred -----hHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-c--cCCCeEEEEEecCC
Confidence 111 23345555554 677778874333 355677778887642 1 12368999999996
No 273
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.76 E-value=0.0001 Score=61.95 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=60.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 185 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD 185 (247)
...+++|.|+-|+|||+..+.|+...|. ... ..... + +.. ..+..+ -++.+|
T Consensus 51 ~d~~lvl~G~QG~GKStf~~~L~~~~~~---d~~------------~~~~~---k-------d~~-~~l~~~--~iveld 102 (198)
T PF05272_consen 51 NDTVLVLVGKQGIGKSTFFRKLGPEYFS---DSI------------NDFDD---K-------DFL-EQLQGK--WIVELD 102 (198)
T ss_pred CceeeeEecCCcccHHHHHHHHhHHhcc---Ccc------------ccCCC---c-------HHH-HHHHHh--HheeHH
Confidence 3457899999999999999999665444 110 00000 0 111 112222 478899
Q ss_pred CCCCCChhhHHHHHhhcccCccccc--------ccCCceEEEEEeCC
Q psy1694 186 EVDKFPKGLLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS 224 (247)
Q Consensus 186 Eiek~~~~~~~~Ll~~Le~~~~~~~--------~~~~~~ifI~tSN~ 224 (247)
|++.+...-++.|+.++.....+.. .--|+++||.|||.
T Consensus 103 El~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 103 ELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred HHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 9999998888999999987643311 14468899999996
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00076 Score=61.92 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=63.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCCCChHHHHH---HH---------HHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYR---LQ---------LTNWIIS 172 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~~~~v~~~~---~~---------l~~~~~~ 172 (247)
++-+++|.||+|+|||+++..||..+... .|. ..-++..+... .+.++..+ +. ....+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R-----~ga~EqL~~~a~~~gv~~~~~~~~~~l~~ 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYR-----IGGHEQLRIFGKILGVPVHAVKDGGDLQL 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEeccccc-----ccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence 45578999999999999999999875321 221 11122221110 01111000 00 0001111
Q ss_pred HHH-hCCCeEEEEeCCCCCChh-hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHHc
Q psy1694 173 NVT-ACDRAIFIFDEVDKFPKG-LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 239 (247)
Q Consensus 173 ~l~-~~~~~vlilDEiek~~~~-~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~ 239 (247)
.+. .....+++||.++..+.+ .+...+..|.... .--+.++++-++.+.+.+++.+..+.+.
T Consensus 209 ~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-----~~~~~lLVLsAts~~~~l~evi~~f~~~ 272 (374)
T PRK14722 209 ALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-----TPVQRLLLLNATSHGDTLNEVVQAYRSA 272 (374)
T ss_pred HHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccC-----CCCeEEEEecCccChHHHHHHHHHHHHh
Confidence 122 234589999999988642 2222333332210 1124577777888999988877665543
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.75 E-value=0.0011 Score=61.88 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc-------------ccCC------CCChHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR-------------IHFP------NENHVSLYRLQ 165 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~-------------l~~~------~~~~v~~~~~~ 165 (247)
.+|.+++|+|++|+||||++..||..+-. .|...-.+..+... ...| ....+. .
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~---~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~----i 170 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQR---KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVK----I 170 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHH----H
Confidence 35778999999999999999999987644 44321122221100 0000 000000 0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694 166 LTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 230 (247)
Q Consensus 166 l~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~ 230 (247)
..+.+ .......+.+||+|=.++++. .+...|..+.+. ++-..+++++-+..|.+.++
T Consensus 171 ~~~~l-~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~------~~p~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 171 ASEGV-EKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEA------IQPDNIIFVMDGSIGQAAEA 230 (429)
T ss_pred HHHHH-HHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhh------cCCcEEEEEeccccChhHHH
Confidence 11122 223334679999999999875 455555544332 12235677777777766644
No 276
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.74 E-value=5.5e-05 Score=68.88 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.|.||||||.+|-.+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 67889999999999999999987
No 277
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.0014 Score=61.21 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=64.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeeccc------c-------cCCCCChHHHHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSR------I-------HFPNENHVSLYRLQLTNWIIS 172 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~------l-------~~~~~~~v~~~~~~l~~~~~~ 172 (247)
+.+++|.||+|+|||+++..||..+. .. .+...-++..+... + ..|.... . -...+...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~-~-~~~~l~~~l~- 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV-Y-DPKELAKALE- 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc-C-CHHhHHHHHH-
Confidence 34789999999999999999988754 20 22222222222100 0 0000000 0 0011122221
Q ss_pred HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694 173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235 (247)
Q Consensus 173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~ 235 (247)
......+|++|..+..+. ...+.|..+++... .--+..+++.++.+..++.+....
T Consensus 296 --~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~-----~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 296 --QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSG-----EPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred --HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC-----CCCeEEEEEECCCCHHHHHHHHHH
Confidence 123468999999988765 34556666666211 113567788888888888766533
No 278
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.73 E-value=6.2e-05 Score=67.78 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=55.7
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil 184 (247)
|..+.++|+.|.|||++.-..=+.+-. . .+.-+|+ ++.+.|.......+ ..+-+.....+... ...|+.|
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~---~--~k~R~HFh~FM~~vH~~l~~l~g-~~dpl~~iA~~~~~--~~~vLCf 136 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLPG---E--RKRRLHFHRFMARVHQRLHTLQG-QTDPLPPIADELAA--ETRVLCF 136 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCCc---c--ccccccHHHHHHHHHHHHHHHcC-CCCccHHHHHHHHh--cCCEEEe
Confidence 356899999999999999888555422 1 1121221 12111100000000 00000111111112 3479999
Q ss_pred eCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694 185 DEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 185 DEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~ 228 (247)
||++--+.. ++..|+..|=. +.++++.|||..++.
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~---------~GV~lvaTSN~~P~~ 174 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFA---------RGVVLVATSNTAPDN 174 (367)
T ss_pred eeeeecChHHHHHHHHHHHHHHH---------CCcEEEEeCCCChHH
Confidence 999665543 45555555544 567899999998874
No 279
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.0017 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.+++++|++|+|||+++..+|..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35788999999999999999999988655
No 280
>KOG0736|consensus
Probab=97.71 E-value=0.0004 Score=68.09 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc
Q psy1694 65 QSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF 143 (247)
Q Consensus 65 ~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~ 143 (247)
+..+...++..+ ...+++..+..+++.+.....-.. ......++|+||+||+|||++.+++|.++.- ++
T Consensus 390 lps~~~~l~n~~--~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~--------h~ 459 (953)
T KOG0736|consen 390 LPSSLSTLWNSL--SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL--------HL 459 (953)
T ss_pred CChhhHHHhccC--CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC--------ce
Confidence 444444444333 345666666555555543211000 0113336999999999999999999999533 68
Q ss_pred eeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCc
Q psy1694 144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQN 215 (247)
Q Consensus 144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~ 215 (247)
+.++|.++-...++..+ ..+.... ...+.|+..++||-..|-+. ..++..+...++.. ...-+...
T Consensus 460 ~evdc~el~~~s~~~~e---tkl~~~f-~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e--~~~~~~~~ 533 (953)
T KOG0736|consen 460 LEVDCYELVAESASHTE---TKLQAIF-SRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNE--DFKFSCPP 533 (953)
T ss_pred EeccHHHHhhcccchhH---HHHHHHH-HHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcc--cccCCCCc
Confidence 88888887655554433 1222233 44567777888877665542 23455555555510 01125567
Q ss_pred eEEEEEeCCC
Q psy1694 216 TIFLFLSNSG 225 (247)
Q Consensus 216 ~ifI~tSN~g 225 (247)
.|||.+++.-
T Consensus 534 ~ivv~t~~s~ 543 (953)
T KOG0736|consen 534 VIVVATTSSI 543 (953)
T ss_pred eEEEEecccc
Confidence 8899887653
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.65 E-value=0.00011 Score=64.59 Aligned_cols=110 Identities=22% Similarity=0.312 Sum_probs=59.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee--eecccccCCCCChHHHHHHHHHHHHHHHHHhC---------
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH--KFNSRIHFPNENHVSLYRLQLTNWIISNVTAC--------- 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~--~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~--------- 177 (247)
.++|.||+|||||.+++..-+.+. ...+.. ++++.. . -...+...+...+.+.
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~-------~~~~~~~~~~~s~~--------T-ts~~~q~~ie~~l~k~~~~~~gP~~ 98 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLD-------SDKYLVITINFSAQ--------T-TSNQLQKIIESKLEKRRGRVYGPPG 98 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCST-------TCCEEEEEEES-TT--------H-HHHHHHHCCCTTECECTTEEEEEES
T ss_pred cEEEECCCCCchhHHHHhhhccCC-------ccccceeEeeccCC--------C-CHHHHHHHHhhcEEcCCCCCCCCCC
Confidence 579999999999999987633321 123222 222211 0 1111222221122221
Q ss_pred -CCeEEEEeCCCCCCh------hhHHHHHhhcccCccccc-----ccCCceEEEEEeCCCh--HHHHHHHH
Q psy1694 178 -DRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG--TEIMNTFL 234 (247)
Q Consensus 178 -~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g~--~~i~~~~~ 234 (247)
..-|+|+|++..-.+ .....|.++++.+.+-+. ....++.|+.+.|-++ ..|+..++
T Consensus 99 ~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~ 169 (272)
T PF12775_consen 99 GKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL 169 (272)
T ss_dssp SSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH
T ss_pred CcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh
Confidence 126889999965432 356788888988764432 3666788898887532 23554443
No 282
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.65 E-value=9.8e-05 Score=72.15 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=72.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcccCCC-----CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694 74 EQLKQHVHGQELAISHICGALKNHFQNRYHNT-----KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 74 ~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~-----kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~ 148 (247)
+.+...++|.+.++..+.=++-....... ++ .-.++|+.|.||||||.+.+.+++.. + . +-|+..-.
T Consensus 282 ~SiaPsIyG~e~VKkAilLqLfgGv~k~~-~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-P---r---~vytsgkg 353 (682)
T COG1241 282 KSIAPSIYGHEDVKKAILLQLFGGVKKNL-PDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-P---R---GVYTSGKG 353 (682)
T ss_pred HHhcccccCcHHHHHHHHHHhcCCCcccC-CCCcccccceeEEEcCCCchhHHHHHHHHHhhC-C---c---eEEEcccc
Confidence 33444688988877666544432211111 11 12579999999999999999997763 2 1 11111111
Q ss_pred ccccCCCCChHHHHHHHHHHH--HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 149 SRIHFPNENHVSLYRLQLTNW--IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 149 ~~l~~~~~~~v~~~~~~l~~~--~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
++-.+-....+. ... ..+| -.|++--+.+||..+||+|||+.....+|..+||..++
T Consensus 354 ss~~GLTAav~r-d~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtI 412 (682)
T COG1241 354 SSAAGLTAAVVR-DKV-TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTI 412 (682)
T ss_pred ccccCceeEEEE-ccC-CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEe
Confidence 111111110000 000 0011 11455567889999999999999999999999998764
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.63 E-value=0.00021 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=20.3
Q ss_pred EEEeecCCChHHHHHHHHHHHhhc
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+++.||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999888776544
No 284
>KOG0477|consensus
Probab=97.61 E-value=6.7e-05 Score=71.78 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHHHHhhh-cccCC---CCCeEEEEeecCCChHHHHHHHHHHHhhcc-ccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQ-NRYHN---TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~-~~~~~---~kpl~lll~G~~GtGKt~~A~~la~~l~~~-~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|-..++..+.-++-.... ++... +--.++||+|.|||||+-..+.+++.-..+ .-.|..+.-|-+.+.....
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 688888888877766654322 22100 112369999999999999999997762110 0012222222222222111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc------cCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~------~~~~~ifI~tSN~ 224 (247)
|..+. |. .-.+++--+.+||-+|||+|||...-...+-..||...+..+. =..++.+|+++|-
T Consensus 530 PvtrE---WT-----LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 530 PVTRE---WT-----LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred Cccce---ee-----eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 11111 11 0114556678899999999999998888888888876543321 1135668888885
No 285
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.58 E-value=0.0031 Score=56.83 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------
Q psy1694 84 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------- 148 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------- 148 (247)
+...+.+.+.+...+.... .+.+|.++.|.||+|+|||+++..+|..+.. .+...-++..+.
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~~D~~r~~a~eql~ 162 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAAGDTFRAAAIEQLQ 162 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEecCccchhhHHHHH
Confidence 3445555556655543111 0235678999999999999999999988654 332111111111
Q ss_pred --------ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--hh---HHHHHhhcccCcccccccCCc
Q psy1694 149 --------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GL---LDVIIPFIDHHAVYNQISFQN 215 (247)
Q Consensus 149 --------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--~~---~~~Ll~~Le~~~~~~~~~~~~ 215 (247)
+....+..... .......+. ......+.++++|=...++. .. +.++.++++. . ....-..
T Consensus 163 ~~a~~~~i~~~~~~~~~dp---a~~v~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~-~--~~~~p~~ 235 (318)
T PRK10416 163 VWGERVGVPVIAQKEGADP---ASVAFDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK-A--DPDAPHE 235 (318)
T ss_pred HHHHHcCceEEEeCCCCCH---HHHHHHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhh-h--cCCCCce
Confidence 00000000000 000011121 11235679999999999874 22 3344444332 0 0111135
Q ss_pred eEEEEEeCCChHHHHHHHHHHH
Q psy1694 216 TIFLFLSNSGGTEIMNTFLELR 237 (247)
Q Consensus 216 ~ifI~tSN~g~~~i~~~~~~~~ 237 (247)
+++++-++.|.+.+++. ..+.
T Consensus 236 ~~LVl~a~~g~~~~~~a-~~f~ 256 (318)
T PRK10416 236 VLLVLDATTGQNALSQA-KAFH 256 (318)
T ss_pred EEEEEECCCChHHHHHH-HHHH
Confidence 67888888888888763 4443
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.57 E-value=0.001 Score=59.32 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 92 GALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 92 ~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+...+.++. ...|+++.+.|+=|+|||++.+.+-+.+-.
T Consensus 6 ~~la~~I~~~~-~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 6 KALAEIIKNPD-SDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred HHHHHHHhccC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34444444443 367889999999999999999999888654
No 287
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=7.3e-05 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.|+||+||||+|+.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999984
No 288
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.55 E-value=0.0027 Score=52.99 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 152 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~ 152 (247)
..+|..+++.|+||+|||+++..+...+. ...++.++..++-
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~-------~~~~v~i~~D~~r 53 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG-------GGGIVVIDADEFR 53 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT--------TT-SEEE-GGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc-------CCCeEEEehHHHH
Confidence 46898999999999999999999977641 2366777755543
No 289
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0028 Score=60.62 Aligned_cols=123 Identities=10% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------CCCCChHHHHHHHHHHHHHHHHHh-C
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-------FPNENHVSLYRLQLTNWIISNVTA-C 177 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-------~~~~~~v~~~~~~l~~~~~~~l~~-~ 177 (247)
+.-++.|.||+|+|||+++..|+..+... ..+...-++..+..... +...-.+.-+...-...+...+.. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34478899999999999999998764330 00111122222211100 000000000000000112222222 3
Q ss_pred CCeEEEEeCCCCCChh--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 178 DRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 178 ~~~vlilDEiek~~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.+.+||+|.....+.+ ....|. .|.... ....++++.++.+..++.+.+..+
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~-~L~aa~------~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLN-WLRAAR------QVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHH-HHHHhh------cCCcEEEEECCCChhHHHHHHHHH
Confidence 4689999999988653 222222 222111 124577788888877777655443
No 290
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.50 E-value=0.00031 Score=70.05 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=48.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc------c---cCCCCChHHHHHHHHHHHHHHHHHhCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR------I---HFPNENHVSLYRLQLTNWIISNVTACDR 179 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~------l---~~~~~~~v~~~~~~l~~~~~~~l~~~~~ 179 (247)
..++.|++|||||++++.+.+.+-. .|.. |....++ + .+.....+..+ +...-.+.-.-.+.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~---~g~~---V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~---~~~~~~~~~~~~~~ 440 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEA---AGYR---VIGAALSGKAAEGLQAESGIESRTLASL---EYAWANGRDLLSDK 440 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHh---CCCe---EEEEeCcHHHHHHHHhccCCceeeHHHH---HhhhccCcccCCCC
Confidence 5788999999999999999777533 3321 2221100 0 01011111100 00000000011245
Q ss_pred eEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 180 AIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 180 ~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
.+||+||+..++...+..|+.....
T Consensus 441 ~llIvDEasMv~~~~~~~Ll~~~~~ 465 (744)
T TIGR02768 441 DVLVIDEAGMVGSRQMARVLKEAEE 465 (744)
T ss_pred cEEEEECcccCCHHHHHHHHHHHHh
Confidence 8999999999999888888875443
No 291
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.49 E-value=0.013 Score=54.88 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+|.++++.|++|+|||+++..+|..+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588899999999999999999998865
No 292
>KOG0480|consensus
Probab=97.46 E-value=0.00012 Score=70.25 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcccCCCC----CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc
Q psy1694 75 QLKQHVHGQELAISHICGALKNHFQNRYHNTK----ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR 150 (247)
Q Consensus 75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~k----pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~ 150 (247)
.|-..++|.+.++.-+.=++-.........+. -.++++.|.|||||+-+.++...- + ++ +-|+.-+.+.
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~f--s---PR--~vYtsGkaSS 414 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAF--S---PR--SVYTSGKASS 414 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhcc--C---Cc--ceEecCcccc
Confidence 33346899998887766554432211110122 247999999999999999998654 3 11 2222222211
Q ss_pred ccCCCC-----ChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 151 IHFPNE-----NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 151 l~~~~~-----~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
--+-.. +.-+.|.- -.+++--++.|+-.|||+|||+..-|.+|...||...+ +..|+-+++|-|.-
T Consensus 415 aAGLTaaVvkD~esgdf~i-----EAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtI----SIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 415 AAGLTAAVVKDEESGDFTI-----EAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTI----SIAKAGVVATLNAR 485 (764)
T ss_pred cccceEEEEecCCCCceee-----ecCcEEEccCceEEechhcccChHhHHHHHHHHHhhee----hheecceEEeecch
Confidence 111000 00011110 11455667889999999999999999999999998654 33455555555543
Q ss_pred h
Q psy1694 226 G 226 (247)
Q Consensus 226 ~ 226 (247)
.
T Consensus 486 t 486 (764)
T KOG0480|consen 486 T 486 (764)
T ss_pred h
Confidence 3
No 293
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.46 E-value=0.0016 Score=57.72 Aligned_cols=117 Identities=13% Similarity=0.199 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
-+.+..++...+.+.|.+...-.+.-++...+.... ...+..+-|+|++++|||+++++.+.. ++ . |-
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-~~~~~~~hl~G~Ss~GKTt~~~~a~Sv-~G---~----p~--- 221 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-GVEGFGFHLYGQSSSGKTTALQLAASV-WG---N----PD--- 221 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-CCCceEEEEEeCCCCCHHHHHHHhhhh-Cc---C----ch---
Confidence 456667777777788887776666566655443332 234567889999999999999888654 55 1 11
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
+.+..|.. ..+.+...........++|||+...++.-...+...|-++.
T Consensus 222 ----------~l~~sw~~-T~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~ 270 (286)
T PF06048_consen 222 ----------GLIRSWNS-TDNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ 270 (286)
T ss_pred ----------hhhhcchh-hHHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence 11121221 23445455556667899999999998876666666666553
No 294
>KOG1942|consensus
Probab=97.46 E-value=0.00038 Score=61.54 Aligned_cols=64 Identities=27% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHhhcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694 76 LKQHVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 151 (247)
Q Consensus 76 L~~~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l 151 (247)
....++||..|.+. +++.++....... .+||.||||||||.+|-+|++.|-+ ..||..+--++.
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGr------avLlaGppgtGKTAlAlaisqELG~------kvPFcpmvgSEv 102 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGR------AVLLAGPPGTGKTALALAISQELGP------KVPFCPMVGSEV 102 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCc------EEEEecCCCCchhHHHHHHHHHhCC------CCCcccccchhh
Confidence 33468999988764 5555654333333 6899999999999999999998643 467765554554
No 295
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.0021 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEeecCCChHHHHHHHHHHHhhc
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++|+|+||+|||+.|+-+|+.|-+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 678999999999999999999866
No 296
>KOG1970|consensus
Probab=97.43 E-value=0.0016 Score=61.86 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|++||+|||||++.+.|++.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhh
Confidence 478999999999999999999985
No 297
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.43 E-value=0.00037 Score=56.31 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=25.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|.++.|+|.||+|||++|+.+.+.|+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999999987
No 298
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.00094 Score=66.43 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=50.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc---------ccCCCCChHHHHHHHHHH---H-HHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR---------IHFPNENHVSLYRLQLTN---W-IISNVT 175 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~---------l~~~~~~~v~~~~~~l~~---~-~~~~l~ 175 (247)
.+++.|+||||||++++.+.+.+.. .+...+ +....++ ..+.+... ....+.. . ......
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~-v~l~ApTg~AA~~L~e~~g~~a~T---ih~lL~~~~~~~~~~~~~ 412 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEE---LGGLLP-VGLAAPTGRAAKRLGEVTGLTAST---IHRLLGYGPDTFRHNHLE 412 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCCce-EEEEeCchHHHHHHHHhcCCcccc---HHHHhhccCCccchhhhh
Confidence 6788999999999999999887544 221011 2221111 00100000 1111100 0 000001
Q ss_pred -hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 176 -ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 176 -~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
..+.++||+||+..++..+...|++.+..+
T Consensus 413 ~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 413 DPIDCDLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred ccccCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence 123589999999999999999999988754
No 299
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.40 E-value=0.00035 Score=63.29 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=42.8
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
..++|-+.+++++++.++..+..-. .+|. +++|+||+|+|||++++.|.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~-~~kr-Il~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLE-ERKR-ILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccC-ccce-EEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999987765443 3333 78999999999999999998774
No 300
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=97.39 E-value=0.0088 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.171 Sum_probs=103.7
Q ss_pred HHHHHHHHhhcCChHH-HHHHHHHHHHHhhhcccCC-CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694 70 RVLEEQLKQHVHGQEL-AISHICGALKNHFQNRYHN-TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 147 (247)
Q Consensus 70 ~~L~~~L~~~l~Gq~~-a~~~l~~~l~~~~~~~~~~-~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~ 147 (247)
...-+.|+...-+|+. ..+.....+..++.... | .+|.+++|++.++.=+| +++||..+...+..-.....+.++
T Consensus 251 ~~~~~~Lk~~fp~Q~~~lW~~~~~~l~~hln~~~-pr~qPavlll~a~~~a~~t--l~cLa~~lA~ays~~~~~~~~~Id 327 (465)
T PF05609_consen 251 QDQIEQLKDKFPSQDEELWKRSRTFLEKHLNASH-PRTQPAVLLLTAAQDAERT--LRCLAEQLADAYSSFRDVSAIRID 327 (465)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCcchH--HHHHHHHHHHHHhhhcCCceEEec
Confidence 3344456667888874 45667777777877666 6 89999999988865555 677776654422121223344444
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE------
Q psy1694 148 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL------ 221 (247)
Q Consensus 148 ~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t------ 221 (247)
-.......... -+-.+...+...+..+. ...|+-.+|++|++..-.+.++=|. +..-|.++.+|||
T Consensus 328 g~~~~~~dsd~---vK~~vD~~l~~~f~~~~-~aavv~~~e~lpp~stlify~YCD~----enA~fK~~alilTv~l~~~ 399 (465)
T PF05609_consen 328 GADKAHQDSDQ---VKLEVDNELSSGFENGQ-KAAVVHRFESLPPGSTLIFYKYCDH----ENAAFKDVALILTVLLEEE 399 (465)
T ss_pred CccccccChHH---HHHHHHHHHHHHhhCCC-eeEEeehhhhCCCchhHHHHHhccC----CCccccceEEEEEEEeccc
Confidence 22221111222 23344556666666654 4555699999999987777777665 3457889999999
Q ss_pred ---eCCChHHHHHHHHHHHHcCccc
Q psy1694 222 ---SNSGGTEIMNTFLELRKSGERY 243 (247)
Q Consensus 222 ---SN~g~~~i~~~~~~~~~~g~~R 243 (247)
++.+..++.+.+.++++....+
T Consensus 400 ~~~~~~~~~~~ee~v~d~l~~~~~~ 424 (465)
T PF05609_consen 400 TLESSLSLKEVEEKVRDFLKAKFTS 424 (465)
T ss_pred ccccccChHHHHHHHHHHHHHHhhc
Confidence 4566778999999988864443
No 301
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.39 E-value=0.0037 Score=51.35 Aligned_cols=113 Identities=8% Similarity=0.121 Sum_probs=62.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-----ccc-----------------ccCCCCChHH--H
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----NSR-----------------IHFPNENHVS--L 161 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-----~~~-----------------l~~~~~~~v~--~ 161 (247)
+++ +.+++++|.|||++|-.+|-...+ .|.+.-++.+. .++ +.+....... .
T Consensus 5 ~Gl-i~v~~g~GkGKtt~a~g~a~ra~~---~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGI-IIVHTGNGKGKTTAAFGMALRALG---HGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccE-EEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 444 455667999999999999887666 44322111111 011 0111111111 0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCC------CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 162 YRLQLTNWIISNVTACDRAIFIFDEVD------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 162 ~~~~l~~~~~~~l~~~~~~vlilDEie------k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
.....-......+....+++|||||+. -++.+ .++.+|+.++ .+.-+|+|-...++++-+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~---~v~~lL~~rp-------~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVE---EVVEALQERP-------GHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHH---HHHHHHHhCC-------CCCEEEEECCCCCHHHHHh
Confidence 111112234455556678999999995 45543 3556666655 5667899987766665543
No 302
>KOG2227|consensus
Probab=97.39 E-value=0.0008 Score=62.73 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=81.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-cceeeecccccCCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-RFVHKFNSRIHFPNEN 157 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~~v~~~~~~l~~~~~~ 157 (247)
.+.|.+.-++.+.+.+..++... ++..+.+.|.||||||.....+-..+-. ...+ .-|++||-++.-+..-
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~----t~gSlYVsG~PGtgkt~~l~rvl~~~~~----~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELN----TSGSLYVSGQPGTGKTALLSRVLDSLSK----SSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcc----cCcceEeeCCCCcchHHHHHHHHHhhhh----hcccceeEEEeeccccchHHH
Confidence 58899988888888887776543 5557889999999999988876444322 1233 3377887654222211
Q ss_pred hHH---HH---------HHHHHHHHHHHHHhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 158 HVS---LY---------RLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 158 ~v~---~~---------~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
+-+ .+ ..++...+........ -=++++||+|.+...-+..|..+++-..+ ..++.|.|..+|.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l----p~sr~iLiGiANs 298 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL----PNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC----Ccceeeeeeehhh
Confidence 100 01 0111223333333333 36778999999988777777777665432 2245566666553
No 303
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.36 E-value=0.0012 Score=55.30 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+|||++++++...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478899999999999999888764
No 304
>PRK13695 putative NTPase; Provisional
Probab=97.36 E-value=0.0023 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
-+.|.|++|+|||++++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999987754
No 305
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.36 E-value=0.0018 Score=48.91 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4688999999999999888887664
No 306
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.35 E-value=0.00053 Score=59.61 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
-+++.||+|+|||++++.+++.+.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 478899999999999999988753
No 307
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.35 E-value=0.0024 Score=54.13 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..++|+||.|+|||++.+.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56889999999999999999853
No 308
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.011 Score=53.07 Aligned_cols=116 Identities=14% Similarity=0.213 Sum_probs=69.0
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee------------------cccc---cCCCCChHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF------------------NSRI---HFPNENHVSLY 162 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~------------------~~~l---~~~~~~~v~~~ 162 (247)
..+|.+++|.|-.|+||||+.-.||+.+.. .|.+.-+..-+ +.-+ .+.+|..+- |
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa-f 211 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA-F 211 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH-H
Confidence 357999999999999999999999999765 44321111110 0000 233333332 2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCCChh--h---HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 163 RLQLTNWIISNVTACDRAIFIFDEVDKFPKG--L---LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 163 ~~~l~~~~~~~l~~~~~~vlilDEiek~~~~--~---~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
+.+. .-.....+++++|=+++|+.. + +.++.+++...- .+ .-...+.++=+.+|.+.++|.
T Consensus 212 -----DAi~-~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~-~~--ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 212 -----DAIQ-AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD-PD--APHEILLVLDATTGQNALSQA 277 (340)
T ss_pred -----HHHH-HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc-CC--CCceEEEEEEcccChhHHHHH
Confidence 2332 223446799999999999863 3 556666665421 00 112244444678888888764
No 309
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.00071 Score=61.96 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
|..+.+.+.+++.. ..|..+.+.|+.|||||++.++|.+.+-+
T Consensus 6 Q~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 55555555555442 25568899999999999999999887533
No 310
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.31 E-value=0.0028 Score=61.60 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 179 RAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 179 ~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
..+||+||+..++..+...|++.+..+
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 479999999999999999999988754
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0086 Score=48.52 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++++.|+||+|||++++.++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999988654
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.31 E-value=0.0017 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+..+++.|+||+|||+++..++....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 33688899999999999999876533
No 313
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.28 E-value=0.0025 Score=51.25 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 179 RAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 179 ~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
.+++|+||++.+++ .....+..++..-. .+..+++.|.+..+......
T Consensus 130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~v~~saT~~~~~~~~~ 178 (201)
T smart00487 130 VDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPEEIENLL 178 (201)
T ss_pred CCEEEEECHHHHhcCCcHHHHHHHHHhCC-------ccceEEEEecCCchhHHHHH
Confidence 46999999999997 44444444444221 23344555555545444443
No 314
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.27 E-value=0.0005 Score=65.78 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=35.1
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
|.-...-++.|...++....... ....++|+||+|||||++.+.||+.+-
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~---~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSS---PKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCC---CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344455667777765443222 223788999999999999999999963
No 315
>KOG1514|consensus
Probab=97.27 E-value=0.0028 Score=61.74 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=84.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc--ceeeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR--FVHKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~--~v~~~~~~l~~~~~ 156 (247)
.|-+.+.-.+.+...++.++.... -...+.+.|-||||||.+.+.+-+.|....+.+.-.+ |+++|.-.+..+..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQG---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCC---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 466677777777777776665421 2336899999999999999999888764222333333 45555433333222
Q ss_pred ChHHHHHH----------HHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 157 NHVSLYRL----------QLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 157 ~~v~~~~~----------~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
-+..-|.. .+ ..+...+. ...-.||++||.|.|-.--|+.|..+++.... .-.+.++|.++
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al-~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAAL-EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL----KNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcccHHHHH-HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC----CCCceEEEEec
Confidence 22221111 11 11112222 12238899999999988889999999887543 23678888888
Q ss_pred CC
Q psy1694 223 NS 224 (247)
Q Consensus 223 N~ 224 (247)
|+
T Consensus 549 NT 550 (767)
T KOG1514|consen 549 NT 550 (767)
T ss_pred cc
Confidence 86
No 316
>PRK06696 uridine kinase; Validated
Probab=97.26 E-value=0.00053 Score=58.38 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=26.6
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+|+.+.+.|++|+|||++|+.|++.+-.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 447889999999999999999999999754
No 317
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.26 E-value=0.0013 Score=67.18 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=47.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc------cc---cCCCCChHHHHHHHHHHHHHHHHHhCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RI---HFPNENHVSLYRLQLTNWIISNVTACDR 179 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~------~l---~~~~~~~v~~~~~~l~~~~~~~l~~~~~ 179 (247)
.+++.|++|||||++.+.+.+.+-. .|. -|....+ .+ .+.....+..+ +..+-.+.-.-.+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~---~G~---~V~~~ApTGkAA~~L~e~tGi~a~TI~sl---l~~~~~~~~~l~~~ 434 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEA---AGY---EVRGAALSGIAAENLEGGSGIASRTIASL---EHGWGQGRDLLTSR 434 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH---cCC---eEEEecCcHHHHHHHhhccCcchhhHHHH---HhhhcccccccccC
Confidence 4679999999999999888666432 221 1221110 00 00000110000 00000000011234
Q ss_pred eEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 180 AIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 180 ~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
.+||+||+..++...+..|++..+.
T Consensus 435 ~vlIVDEASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 435 DVLVIDEAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred cEEEEECcccCCHHHHHHHHHhhhh
Confidence 7999999999999998888876644
No 318
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.25 E-value=0.00028 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..++|+|+||+|||++|+.+|+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999985
No 319
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.24 E-value=0.0044 Score=51.66 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=26.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|..+.+.|++|+|||++|+.|+..++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999998765
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.016 Score=54.99 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCCCChH---HHHHHHH----------HHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHV---SLYRLQL----------TNWII 171 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~~~~v---~~~~~~l----------~~~~~ 171 (247)
++.++.|.||+|+||||++..||..+... .|. .--++..+. ...+.. ..|-+.+ .+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~~kV~LI~~Dt-----~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~ 327 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMR--HGASKVALLTTDS-----YRIGGHEQLRIYGKILGVPVHAVKDAADLRL 327 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHh--cCCCeEEEEeCCc-----cchhHHHHHHHHHHHhCCCeeccCCchhHHH
Confidence 45689999999999999999999875321 221 111111111 000000 0010000 01111
Q ss_pred HHHHhCCCeEEEEeCCCCCChhh-HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 172 SNVTACDRAIFIFDEVDKFPKGL-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~~~-~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
..........+++|..+..+..- ....+..+.... . . -+.++++-++.+...+.+....+
T Consensus 328 aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~--~--p-~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAG--A--P-VKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccC--C--C-CeeEEEEeCCCcHHHHHHHHHHh
Confidence 12222345799999998776432 222333333211 0 1 23577777788888887765444
No 321
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.23 E-value=0.00029 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.||||+|||++|+.+++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 46889999999999999998773
No 322
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.23 E-value=0.00055 Score=57.96 Aligned_cols=87 Identities=20% Similarity=0.267 Sum_probs=44.8
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCc-ceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR-FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~-~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
++++|+||+|||+..+.+...... -...++ ........ ..+........ ..........+.+..+++||+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~v----~s~~~~~~~~~~~~~liiDE~~ 72 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDRLV---VTVISPTIELYTEWL-PDPPSKSVRTV----DSFLKALVKPKSYDTLIIDEAQ 72 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhccc---cccccccceeccccc-cccCCccccEE----eEhhhcccccCcCCEEEEeccc
Confidence 367999999999999988776200 000011 11111100 00111100000 0111111122357899999999
Q ss_pred CCChhhHHHHHhhccc
Q psy1694 189 KFPKGLLDVIIPFIDH 204 (247)
Q Consensus 189 k~~~~~~~~Ll~~Le~ 204 (247)
.+|++....+......
T Consensus 73 ~~~~g~l~~l~~~~~~ 88 (234)
T PF01443_consen 73 LLPPGYLLLLLSLSPA 88 (234)
T ss_pred cCChHHHHHHHhhccC
Confidence 9999887776655443
No 323
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.22 E-value=0.0043 Score=60.62 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.9
Q ss_pred eEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 180 AIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 180 ~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
.++|+||+..++..+...|++.+..+
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhcccC
Confidence 79999999999999999999998764
No 324
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.21 E-value=0.0072 Score=53.15 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=62.7
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
++=-+.|++.+.+..+ .+..+. -..+|.|.+|+||.++++..|.. .+ -.++.+.. ...-..
T Consensus 10 lVlf~~ai~hi~ri~R-vL~~~~-----Gh~LLvG~~GsGr~sl~rLaa~i-~~-------~~~~~i~~-----~~~y~~ 70 (268)
T PF12780_consen 10 LVLFDEAIEHIARISR-VLSQPR-----GHALLVGVGGSGRQSLARLAAFI-CG-------YEVFQIEI-----TKGYSI 70 (268)
T ss_dssp ----HHHHHHHHHHHH-HHCSTT-----EEEEEECTTTSCHHHHHHHHHHH-TT-------EEEE-TTT-----STTTHH
T ss_pred eeeHHHHHHHHHHHHH-HHcCCC-----CCeEEecCCCccHHHHHHHHHHH-hc-------cceEEEEe-----eCCcCH
Confidence 4445667777765544 333221 15789999999999999966543 33 11222211 111123
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 160 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 160 ~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
..|++.++..+...--+....+++++|-+-.++..++.+-.+|..|.+
T Consensus 71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei 118 (268)
T PF12780_consen 71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI 118 (268)
T ss_dssp HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC
Confidence 456666666665433344558888899887777777777777777753
No 325
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0015 Score=53.80 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=26.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++-|+|.+|.|||++|.++.+.|+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999999988
No 326
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0018 Score=60.02 Aligned_cols=81 Identities=11% Similarity=0.244 Sum_probs=50.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDE 186 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDE 186 (247)
.+++.||-+||||++.+.+.+.+.. ..+.++..+....... +.+......... ....+||||
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~--------~~iy~~~~d~~~~~~~--------l~d~~~~~~~~~~~~~~yifLDE 102 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE--------EIIYINFDDLRLDRIE--------LLDLLRAYIELKEREKSYIFLDE 102 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc--------ceEEEEecchhcchhh--------HHHHHHHHHHhhccCCceEEEec
Confidence 7788999999999999888666432 2455553333221111 111121111111 447999999
Q ss_pred CCCCChhhHHHHHhhcccCc
Q psy1694 187 VDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 187 iek~~~~~~~~Ll~~Le~~~ 206 (247)
|+..+. .+..+..+.|.+.
T Consensus 103 Iq~v~~-W~~~lk~l~d~~~ 121 (398)
T COG1373 103 IQNVPD-WERALKYLYDRGN 121 (398)
T ss_pred ccCchh-HHHHHHHHHcccc
Confidence 999885 6678888888764
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.17 E-value=0.00038 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=20.3
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999984
No 328
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.16 E-value=0.00091 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
....+.+.+.+.+.... +++|.|+.|+|||++++.+++.+-
T Consensus 7 ~t~~l~~~l~~~l~~~~------~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGT------VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCC------EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34455555555443333 789999999999999999999863
No 329
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.16 E-value=0.0084 Score=50.02 Aligned_cols=114 Identities=9% Similarity=0.054 Sum_probs=62.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee----------------------ccc-ccCCCCChHHH--HH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------------------NSR-IHFPNENHVSL--YR 163 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~----------------------~~~-l~~~~~~~v~~--~~ 163 (247)
.+.++|++|.|||++|-.+|-...+ .|.+.-++.+. ++. +.+........ ..
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 5788999999999999999877665 44322211111 111 01111111010 11
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCCh-h--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 164 LQLTNWIISNVTACDRAIFIFDEVDKFPK-G--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 164 ~~l~~~~~~~l~~~~~~vlilDEiek~~~-~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
...-......+....+++|||||+-.+-. + -.+.++.+|+.++ .+.-+|+|-...++++-+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-------~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-------GMQHVVITGRGAPRELIEA 165 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence 11122334555666789999999943311 1 1334556666655 5667899977766665543
No 330
>PRK06762 hypothetical protein; Provisional
Probab=97.14 E-value=0.00042 Score=55.90 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.7
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
|..+.++|+||+|||++|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5578899999999999999999885
No 331
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.12 E-value=0.0048 Score=64.55 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
...++.++|++|+|||++|+++++.+.
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 344688999999999999999987753
No 332
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0093 Score=54.97 Aligned_cols=28 Identities=29% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+++|.||+|+|||+++..+|..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557899999999999999999987644
No 333
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.12 E-value=0.00059 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 47889999999998777776665
No 334
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.09 E-value=0.0091 Score=48.99 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=24.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|..+.+.|++|+|||++|+.++..+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5568899999999999999999988654
No 335
>KOG2383|consensus
Probab=97.09 E-value=0.0016 Score=59.81 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la 128 (247)
+-|..+.++|..|||||++.-..=
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy 135 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFY 135 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHh
Confidence 347789999999999999998873
No 336
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.09 E-value=0.0087 Score=52.68 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=64.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-------------cccCCCCChHHHHHHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-------------RIHFPNENHVSLYRLQLTNWIISNV 174 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-------------~l~~~~~~~v~~~~~~l~~~~~~~l 174 (247)
-.+.|.||+|+|||++++.++..+.. .+...-++..+-. ...++.... . -...+...+. .+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~-~~~~l~~~l~-~l 149 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-R-DEAAMTRALT-YF 149 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-C-CHHHHHHHHH-HH
Confidence 46899999999999999999888654 3322222222110 011110000 0 0112222232 23
Q ss_pred Hh-CCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 175 TA-CDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 175 ~~-~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.. ....++++|-..+.+ ...+..|..+++... -..+++++-++..++++.+.+..+
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~------~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC------CCeEEEEEcCccCHHHHHHHHHHh
Confidence 32 356999999999996 456666666655321 123455555677777776655443
No 337
>PRK08118 topology modulation protein; Reviewed
Probab=97.08 E-value=0.00048 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.||||+||||+|+.|++.+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999885
No 338
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.08 E-value=0.0065 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||+|+|||++|..++..+..
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999998655555444
No 339
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.08 E-value=0.00064 Score=55.45 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|..+.|.|++|+|||++|+.+++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36678999999999999999999998754
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.07 E-value=0.003 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+|||++.+++.+.+.
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 588999999999999999988754
No 341
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.06 E-value=0.0013 Score=58.57 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=25.2
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|+.+++.|++|+|||++|+.||+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999999986
No 342
>PRK08233 hypothetical protein; Provisional
Probab=97.05 E-value=0.00052 Score=55.83 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++.++.+.|+||+||||+|+.|++++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999999985
No 343
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.03 E-value=0.0073 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+.++||+|+|||++.+.|+-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 368899999999999999998654
No 344
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.052 Score=54.19 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecc------------cccCCCCChHHHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNS------------RIHFPNENHVSLYRLQLTNWIIS 172 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~------------~l~~~~~~~v~~~~~~l~~~~~~ 172 (247)
++.++.|.||+|+||||++..||..+... .|. ...++..+.. +..+.+...+.. ...+...+.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~- 259 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALA- 259 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHH-
Confidence 35689999999999999999998775220 221 1111111110 000000000000 111222221
Q ss_pred HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.+ ..+.+|++|=.+..+. .+...+..+.+.. .-.+.++++-++.+.+.+++.+..+
T Consensus 260 ~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~------~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 260 AL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVG------RPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred Hh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccC------CCCeEEEEECCCCcHHHHHHHHHHH
Confidence 12 2458999999998874 3333333333321 1134566666777788887665443
No 345
>PF13479 AAA_24: AAA domain
Probab=97.02 E-value=0.0007 Score=57.30 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=44.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-cceeeecccccCCCCChHHHHHHHHHHHHHHHH-HhCCCeEEE
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV-TACDRAIFI 183 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l-~~~~~~vli 183 (247)
+|..++++|+||+|||++|..+-+.++-.-+.|..+ +... +... .+ +..|.+ +.+.+...- ...++.+||
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~-~~~~---i~---i~s~~~-~~~~~~~l~~~~~~y~tiV 73 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLD-DGDV---IP---ITSWED-FLEALDELEEDEADYDTIV 73 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhc-CCCe---eC---cCCHHH-HHHHHHHHHhccCCCCEEE
Confidence 566799999999999999998844433211122100 0000 0000 00 112322 122221111 245789999
Q ss_pred EeCCCCCChhhHHHHH
Q psy1694 184 FDEVDKFPKGLLDVII 199 (247)
Q Consensus 184 lDEiek~~~~~~~~Ll 199 (247)
||.++.+-.-+...+.
T Consensus 74 IDsis~~~~~~~~~~~ 89 (213)
T PF13479_consen 74 IDSISWLEDMCLEYIC 89 (213)
T ss_pred EECHHHHHHHHHHHHh
Confidence 9999877555544444
No 346
>PF13245 AAA_19: Part of AAA domain
Probab=97.02 E-value=0.00091 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=17.0
Q ss_pred EEEEeecCCChHH-HHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKN-YVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt-~~A~~la~~l 131 (247)
.+++.|||||||| ++++.+++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667999999999 5556665554
No 347
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.02 E-value=0.006 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.091 Sum_probs=21.3
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
-.+.++||.|+|||++.+.|+...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHH
Confidence 3688999999999999999985543
No 348
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.00 E-value=0.0022 Score=59.26 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEeecCCChHHHHHHHHHHHhh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+++.||+|+|||++++.+++.+.
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc
Confidence 78899999999999999988853
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.99 E-value=0.026 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||+|+|||++.+++...+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998774
No 350
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.98 E-value=0.0016 Score=57.84 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 92 GALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 92 ~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.....++.... .++|..+-+.||+|+||||+|+.|...+.
T Consensus 48 ~~~~~f~~~~~-~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 48 AVLEQFLGTNG-AKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHHhccc-CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33334443332 56888999999999999999999987754
No 351
>PRK05439 pantothenate kinase; Provisional
Probab=96.98 E-value=0.0021 Score=57.68 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 90 l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+...+..++..+. .++|.++.+.|+||+|||++|+.|++.+
T Consensus 70 ~~~~~~~fl~~~~-~~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 70 LQAALEQFLGKNG-QKVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred HHHHHHHHhcccC-CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333444444333 5688899999999999999999998875
No 352
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.98 E-value=0.0021 Score=56.03 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCCC--------h
Q psy1694 88 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNEN--------H 158 (247)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~~--------~ 158 (247)
+.+.+.+........ ++++.||+|+|||++++++.+.+-. . ....+.+- ..++..+.+. .
T Consensus 114 ~~~~~~l~~~v~~~~------~ili~G~tGSGKTT~l~all~~i~~---~--~~~iv~iEd~~E~~l~~~~~~~~~~~~~ 182 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRG------NILISGPTGSGKTTLLNALLEEIPP---E--DERIVTIEDPPELRLPGPNQIQIQTRRD 182 (270)
T ss_dssp HHHHHHHHHCHHTTE------EEEEEESTTSSHHHHHHHHHHHCHT---T--TSEEEEEESSS-S--SCSSEEEEEEETT
T ss_pred HHHHHHHhhccccce------EEEEECCCccccchHHHHHhhhccc---c--ccceEEeccccceeecccceEEEEeecC
Confidence 445555554444444 7899999999999999999887544 2 11222221 2222222211 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
...|.+ .+...+ +...++++++|+-.. ..... +...+.|.
T Consensus 183 ~~~~~~----~l~~~L-R~~pD~iiigEiR~~--e~~~~-~~a~~tGh 222 (270)
T PF00437_consen 183 EISYED----LLKSAL-RQDPDVIIIGEIRDP--EAAEA-IQAANTGH 222 (270)
T ss_dssp TBSHHH----HHHHHT-TS--SEEEESCE-SC--HHHHH-HHHHHTT-
T ss_pred cccHHH----HHHHHh-cCCCCcccccccCCH--hHHHH-HHhhccCC
Confidence 111332 333333 445589999999753 44455 66777653
No 353
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.028 Score=52.55 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCC-CCCcceeeeccc------------ccC-CCCChHHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GTSRFVHKFNSR------------IHF-PNENHVSLYRLQLTNWII 171 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~~~~~v~~~~~~------------l~~-~~~~~v~~~~~~l~~~~~ 171 (247)
++-.+.|.||+|+|||++...||...... .+ ....++..+... +.+ +.. .+.. ...+...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~--~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~-~~dl~~al- 264 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIR--HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKD-IADLQLML- 264 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCC-HHHHHHHH-
Confidence 44578999999999999999998753210 11 111222222111 100 000 0000 01111111
Q ss_pred HHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694 172 SNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~ 236 (247)
.......++++|..+..+. .+...|..+..... --+.++++-++.+.+.+.+....+
T Consensus 265 --~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~------~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 265 --HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT------QVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred --HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCC------CceEEEEEcCCCCHHHHHHHHHHh
Confidence 1223458999999987763 33344433322111 134567777788888887665433
No 354
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.97 E-value=0.0032 Score=60.88 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=29.7
Q ss_pred CeEEEEeCC-CCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 179 RAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 179 ~~vlilDEi-ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
...+||||. +.++++..+.+.+.+++. ...+++|-++
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~-------lp~~tvISV~ 571 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEE-------LPDATVISVG 571 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhh-------CCCCEEEEec
Confidence 489999999 778999999999999983 2456666665
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.92 E-value=0.00094 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..+.+.|++|+||||+++.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477889999999999999999999985
No 356
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00071 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||||+|||++|+.||+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 46788999999999999999995
No 357
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.00081 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.|+||+|||++++.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999984
No 358
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.90 E-value=0.02 Score=52.83 Aligned_cols=115 Identities=15% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCCCChHHHHHH-------------HHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-------------QLTNWII 171 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~-------------~l~~~~~ 171 (247)
++.++.|.||+|+||||+.-.||.... .. ....-.++..+.-++...+ ....|-+ .+...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA~E--QLk~Ya~im~vp~~vv~~~~el~~ai- 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGAVE--QLKTYADIMGVPLEVVYSPKELAEAI- 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhHHH--HHHHHHHHhCCceEEecCHHHHHHHH-
Confidence 355899999999999998877776643 10 1122234444432221000 0011111 122223
Q ss_pred HHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 172 SNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
..+..| .+|++|=+++-+. .....|..+++... + -+..+++.+|.-.+++.+..
T Consensus 277 ~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~-----~-i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 277 EALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSH-----S-IEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred HHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccc-----c-ceEEEEEecCcchHHHHHHH
Confidence 334444 8999999988764 44566666666531 1 22344555555555555443
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.88 E-value=0.00074 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.|+||+|||++|+.||+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 36889999999999999999873
No 360
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.88 E-value=0.0069 Score=54.57 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=59.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCCCCChHHH---HHHHHHHHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVSL---YRLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~~~~~v~~---~~~~l~~~~~~~l~~~~~~vlil 184 (247)
++++.|++|+|||++++++...+.. .......+.+ +..++..+.+..+.. ....+.+.+...+ +...+.+++
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~---~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL-R~~PD~Iiv 225 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVI---QDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL-RMRPDRILV 225 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhh---cCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh-cCCCCEEEE
Confidence 6899999999999999999877532 0001112211 123332222111100 0001233444444 344588899
Q ss_pred eCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK 238 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~ 238 (247)
.|+-. ++..+ +++.+..+. .-++.-+-+|...+.+.+. ..+.+
T Consensus 226 GEiR~--~Ea~~-~l~A~~tGh-------~G~~tTiHa~s~~~ai~Rl-~~l~~ 268 (319)
T PRK13894 226 GEVRG--PEALD-LLMAWNTGH-------EGGAATLHANNAKAGLDRL-KSLIS 268 (319)
T ss_pred eccCC--HHHHH-HHHHHHcCC-------CceEEEECCCCHHHHHHHH-HHHHh
Confidence 99965 33433 566776653 2234444456666666654 34444
No 361
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0011 Score=54.39 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
..|..+.+.|++|+|||++|+.+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678899999999999999999873
No 362
>PLN02200 adenylate kinase family protein
Probab=96.87 E-value=0.0011 Score=57.18 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..|..+++.|+||+|||++|+.|++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345778899999999999999999987
No 363
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.87 E-value=0.0023 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEeecCCChHHHHHHHHHHHhh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++|+|+||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999864
No 364
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.003 Score=54.28 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=50.2
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-----e-cccccCCCCCh----HHHH----HHHH-HHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-----F-NSRIHFPNENH----VSLY----RLQL-TNWIIS 172 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-----~-~~~l~~~~~~~----v~~~----~~~l-~~~~~~ 172 (247)
++.++.||||||||++.|=||+.+. .+. +.|.+. + -+++.+...+. .+.- ..-. ..-+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s----~g~-~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmm 212 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS----DGI-NQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMM 212 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh----ccc-cccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHH
Confidence 3578999999999999999999853 331 122222 1 13332211100 0000 0000 011335
Q ss_pred HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 173 NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 173 ~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
+++.....|+++|||+.+... .+++..++.+
T Consensus 213 aIrsm~PEViIvDEIGt~~d~--~A~~ta~~~G 243 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEEDA--LAILTALHAG 243 (308)
T ss_pred HHHhcCCcEEEEeccccHHHH--HHHHHHHhcC
Confidence 566666789999999887653 3455555554
No 365
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.86 E-value=0.0027 Score=54.24 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.|.+.+..+... +.+|..+.+.||+|+|||++++.|+..+..
T Consensus 18 ~l~~~~~~~~~~---~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 18 PLLRRLAALQAE---PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHHhc---CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 344444444433 347888999999999999999999988654
No 366
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.86 E-value=0.01 Score=51.52 Aligned_cols=90 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec-------------ccccCCCCChHHHHHHHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-------------SRIHFPNENHVSLYRLQLTNWIISNVT 175 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~-------------~~l~~~~~~~v~~~~~~l~~~~~~~l~ 175 (247)
.+.++|+.|+|||++.|++...+.. +. ...+.++- .++..++...+..-..+..+.+...+.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~---d~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNE---DQ--VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCC---Cc--eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 5678999999999999977666433 21 11122221 222222222223223334455556666
Q ss_pred hCCC-eEEEEeCCCCCChhhHHHHHhhcc
Q psy1694 176 ACDR-AIFIFDEVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 176 ~~~~-~vlilDEiek~~~~~~~~Ll~~Le 203 (247)
+..+ -++++||++.+..+....|+.+.+
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~n 156 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTN 156 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHh
Confidence 6666 788899999999988888877654
No 367
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.86 E-value=0.012 Score=49.65 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=20.6
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
-.+++.||+|.|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999997553
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.86 E-value=0.001 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999886
No 369
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.85 E-value=0.0069 Score=55.59 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
-.++.||+|||||++++.+++.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3588999999999999999998654
No 370
>KOG0479|consensus
Probab=96.83 E-value=0.005 Score=58.98 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHh----hhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCccee
Q psy1694 71 VLEEQLKQHVHGQELAISHICGALKNH----FQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVH 145 (247)
Q Consensus 71 ~L~~~L~~~l~Gq~~a~~~l~~~l~~~----~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~ 145 (247)
-|.+.|...++|.+.+++.+.=.+-.. +.+...-+--.++|+.|.|-|.|+-+.|.+-+..-.... .|..|.=|-
T Consensus 294 lLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVG 373 (818)
T KOG0479|consen 294 LLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVG 373 (818)
T ss_pred HHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCcc
Confidence 355666778999998887776555432 222221223357999999999999999999665211000 111222222
Q ss_pred eecccccCCCCChHHHHHHHHHHHH-HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc
Q psy1694 146 KFNSRIHFPNENHVSLYRLQLTNWI-ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN 209 (247)
Q Consensus 146 ~~~~~l~~~~~~~v~~~~~~l~~~~-~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~ 209 (247)
...+.-..++.+ +.++ .++.--+.+||+.|||+|||+..-..++-.+||.++++.
T Consensus 374 LTAAVTtD~eTG---------ERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTI 429 (818)
T KOG0479|consen 374 LTAAVTTDQETG---------ERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTI 429 (818)
T ss_pred ceeEEeeccccc---------hhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEe
Confidence 221111111111 1112 133445678999999999999988889999999887553
No 371
>KOG3347|consensus
Probab=96.83 E-value=0.00093 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.7
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++++|.||||||+++..||+.
T Consensus 9 NILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHH
Confidence 6899999999999999999976
No 372
>PRK14527 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=54.76 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..+++.||||+|||++|+.+++.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998773
No 373
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.81 E-value=0.0055 Score=54.19 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 84 ELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+.+.+.+.+...+..... ..++.+++|.||+|+|||+++..||..+..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455555656554431110 125668999999999999999999988643
No 374
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.80 E-value=0.014 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=19.2
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
++++||.|.|||++.+.++-..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999998443
No 375
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.79 E-value=0.0035 Score=57.87 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.2
Q ss_pred EEEeecCCChHHHHHHHHHHHhhc
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++.||+|+|||++++.|++.+..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 678899999999999999988644
No 376
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.79 E-value=0.0014 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++.++.+.||+|+||||+++.|+..+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4466788999999999999999998874
No 377
>PRK14532 adenylate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.||||+|||++|+.||+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999987
No 378
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.77 E-value=0.014 Score=53.65 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=48.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCC--------ChHHHHHHHHHHHHHHHHHhCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNE--------NHVSLYRLQLTNWIISNVTACDR 179 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~--------~~v~~~~~~l~~~~~~~l~~~~~ 179 (247)
.+++.||+|+|||++.+++.+++.. .......+.+. -.++..+.+ ..++.-...+...++..++. ..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~---~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~-~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGE---TYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRR-AP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh---cCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhcc-CC
Confidence 4788999999999999999888642 11111122211 112111110 00010000122334344443 56
Q ss_pred eEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 180 AIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 180 ~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
++++++|+-. ++..+..++..+.|.
T Consensus 227 D~I~vGEiRd--~et~~~al~aa~TGH 251 (372)
T TIGR02525 227 KIIGVGEIRD--LETFQAAVLAGQSGH 251 (372)
T ss_pred CEEeeCCCCC--HHHHHHHHHHHhcCC
Confidence 8999999963 445555566666653
No 379
>PRK00625 shikimate kinase; Provisional
Probab=96.77 E-value=0.0012 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|.|.||+|||++++.+|+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999985
No 380
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.75 E-value=0.0014 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.|+||+|||++|+.+++.+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68899999999999999998874
No 381
>PRK13947 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.|+||+|||++|+.+|+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 382
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.74 E-value=0.0042 Score=54.64 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=37.1
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-----CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-----FPNENHVSLYRLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-----~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil 184 (247)
++++|-||+|||++|+.|++.+-. .+. ..+.++-..+. +......+..++.+...+...+.. ..+||+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~---~~~--~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~--~~iVI~ 76 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE---KGK--EVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK--DTIVIL 76 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH---TT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT---SEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh---cCC--EEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc--CeEEEE
Confidence 677999999999999999998544 322 22233221221 112222233444555555444433 379999
Q ss_pred eCCCCC
Q psy1694 185 DEVDKF 190 (247)
Q Consensus 185 DEiek~ 190 (247)
|.....
T Consensus 77 Dd~nYi 82 (270)
T PF08433_consen 77 DDNNYI 82 (270)
T ss_dssp -S---S
T ss_pred eCCchH
Confidence 998654
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.014 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.6
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++.||||+|||++|..++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999988776443
No 384
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.72 E-value=0.0013 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
++++|+||+|||++|+.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999884
No 385
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.72 E-value=0.0083 Score=54.08 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.||||+|||++|-.++.+...
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~ 81 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQK 81 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999877666443
No 386
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.71 E-value=0.018 Score=52.25 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++-+.|+||+|||++...+...+-.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999888654
No 387
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.71 E-value=0.024 Score=45.08 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.3
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.||+|+|||+++...+-.
T Consensus 16 ~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCccHHHHHHHHHh
Confidence 5789999999999999865544
No 388
>PRK07667 uridine kinase; Provisional
Probab=96.70 E-value=0.0032 Score=52.42 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++.+.+.|++|+|||++|+.|++.+-.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4468899999999999999999998754
No 389
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.70 E-value=0.0074 Score=64.07 Aligned_cols=104 Identities=13% Similarity=0.239 Sum_probs=69.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-------HHHHHHHHHHhCCCeE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-------LTNWIISNVTACDRAI 181 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-------l~~~~~~~l~~~~~~v 181 (247)
.+++.||+.+|||.+...+|+... ..||++|-.+. .....+++.|... -++.+-+++++ +--
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tg--------hkfVRINNHEH-TdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~--GyW 958 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETG--------HKFVRINNHEH-TDLQEYIGTYVTDDDGSLSFKEGVLVEALRR--GYW 958 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhC--------ccEEEecCccc-chHHHHhhceeecCCCceeeehhHHHHHHhc--CcE
Confidence 469999999999999999998842 37899885432 1112233322110 01344455544 457
Q ss_pred EEEeCCCCCChhhHHHHHhhcccCcc-----ccc--ccCCceEEEEEeC
Q psy1694 182 FIFDEVDKFPKGLLDVIIPFIDHHAV-----YNQ--ISFQNTIFLFLSN 223 (247)
Q Consensus 182 lilDEiek~~~~~~~~Ll~~Le~~~~-----~~~--~~~~~~ifI~tSN 223 (247)
+++||..-.|.+++.+|-++||..+- ++- +...+..+..|-|
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 88999999999999999999998652 111 2445555666667
No 390
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.70 E-value=0.02 Score=47.79 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEeecCCChHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~ 129 (247)
.++|+||.|+|||++.+.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 689999999999999999983
No 391
>PRK04040 adenylate kinase; Provisional
Probab=96.70 E-value=0.0017 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
|..+.++|+||+|||++++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.70 E-value=0.0011 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.||+|+|||++|+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 3678999999999999998874
No 393
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.69 E-value=0.0052 Score=57.80 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..+++.|+||+|||++|..+|+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999999985
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.68 E-value=0.01 Score=48.86 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=46.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee---cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF---NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 185 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~---~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD 185 (247)
.+.+.||+|+|||++.++|+..+... .| -+.++ ++... .....-+.-+.. -.+...+.. ...++++|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G----~i~~~g~~i~~~~-q~~~LSgGq~qr--v~laral~~-~p~lllLD 96 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN--GD----NDEWDGITPVYKP-QYIDLSGGELQR--VAIAAALLR-NATFYLFD 96 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC--Cc----EEEECCEEEEEEc-ccCCCCHHHHHH--HHHHHHHhc-CCCEEEEE
Confidence 57889999999999999997764320 11 12221 11110 011111111111 112122222 44899999
Q ss_pred CCC-CCChhhHHHHHhhccc
Q psy1694 186 EVD-KFPKGLLDVIIPFIDH 204 (247)
Q Consensus 186 Eie-k~~~~~~~~Ll~~Le~ 204 (247)
|-- .+++.....+...+.+
T Consensus 97 EPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 994 6777777766666654
No 395
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.67 E-value=0.0017 Score=54.65 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.7
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
|.+|..++|.||+|+|||++++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 567778899999999999999999764
No 396
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.67 E-value=0.0014 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.|+||+|||++|+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 578999999999999999887
No 397
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.024 Score=45.15 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++++.|+||+|||++|+.++..+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999998753
No 398
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.64 E-value=0.0096 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.8
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
...+.++||||+|||+++..++.+...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999998877544
No 399
>PRK07261 topology modulation protein; Provisional
Probab=96.63 E-value=0.0016 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.|+||+|||++|+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998773
No 400
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.63 E-value=0.012 Score=52.46 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=47.8
Q ss_pred EEEeecCCChHHHHHHHHHHHhhccccCC---C--CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDK---G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~~~~~g---~--~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil 184 (247)
+|.+||+|+|||++..++-.++......- . .-.||+.+-..+ -....++.....+.+.++.++++.| +|+++
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skksl--I~QREvG~dT~sF~~aLraALReDP-DVIlv 204 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSL--INQREVGRDTLSFANALRAALREDP-DVILV 204 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhh--hhHHHhcccHHHHHHHHHHHhhcCC-CEEEE
Confidence 67799999999999888878765410000 0 111222221110 0011122223334455666666654 78887
Q ss_pred eCCCCCChhhHHHHHhhcccCc
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~ 206 (247)
=|+- +.+....-+..=|.|.
T Consensus 205 GEmR--D~ETi~~ALtAAETGH 224 (353)
T COG2805 205 GEMR--DLETIRLALTAAETGH 224 (353)
T ss_pred eccc--cHHHHHHHHHHHhcCC
Confidence 7773 3344455555556654
No 401
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.63 E-value=0.0019 Score=55.45 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.|+-+++.||||+|||++|+.||+.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56668999999999999999999983
No 402
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.62 E-value=0.012 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.++||||+|||++|-.++.+...
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999887666433
No 403
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.62 E-value=0.015 Score=45.96 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec-ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV 187 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~-~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEi 187 (247)
.+.+.||+|+|||++.++++..+... .| . +.++- ..+.+... .-+.-+. +-.+...+.. +..++++||-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G---~-i~~~~~~~i~~~~~-lS~G~~~--rv~laral~~-~p~illlDEP 97 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPD--EG---I-VTWGSTVKIGYFEQ-LSGGEKM--RLALAKLLLE-NPNLLLLDEP 97 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC--ce---E-EEECCeEEEEEEcc-CCHHHHH--HHHHHHHHhc-CCCEEEEeCC
Confidence 57899999999999999997763220 11 1 11110 00000000 1010111 1112222222 4489999999
Q ss_pred C-CCChhhHHHHHhhccc
Q psy1694 188 D-KFPKGLLDVIIPFIDH 204 (247)
Q Consensus 188 e-k~~~~~~~~Ll~~Le~ 204 (247)
. .+++.....+...+.+
T Consensus 98 ~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 98 TNHLDLESIEALEEALKE 115 (144)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 4 6788888888877765
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.61 E-value=0.0018 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|+||+|||++|+.+++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999873
No 405
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.61 E-value=0.0054 Score=49.27 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
|..+++.+.+.+... . .+..+++.+|+|+|||.++-.++..++.
T Consensus 8 Q~~ai~~i~~~~~~~-~------~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 8 QQEAIARIINSLENK-K------EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHTT-S------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc-C------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 666777666666543 0 2226799999999999999976666543
No 406
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.60 E-value=0.0097 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|.++++.||+|+|||++|..||+.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC
Confidence 45578999999999999999999984
No 407
>PLN02674 adenylate kinase
Probab=96.59 E-value=0.0035 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+++.||||+||++.|+.||+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999997
No 408
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.59 E-value=0.0018 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+.+.|+||+|||++|+.|++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999884
No 409
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0028 Score=51.61 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++.++.+.|+||+|||++|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3447889999999999999999998754
No 410
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.58 E-value=0.049 Score=46.91 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=56.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-------cccccCCC--CChHHHHHHHHHHHHHHHHHh-C
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------NSRIHFPN--ENHVSLYRLQLTNWIISNVTA-C 177 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-------~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~-~ 177 (247)
..++++||...|||+..|.++-..+-.+ -|...|.-... ...+...+ ......|..++.. +...+.. .
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq-~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~-~~~il~~~~ 121 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQ-IGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKR-LSSILRNAT 121 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHT-TT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHH-HHHHHHH--
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhh-cCceeeecccccccccEEEeecccccccccccccHHHhHHH-HHhhhhhcc
Confidence 4789999999999999999988764321 23211110100 11111111 1112335444432 3234444 3
Q ss_pred CCeEEEEeCCCCCCh-----hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 178 DRAIFIFDEVDKFPK-----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 178 ~~~vlilDEiek~~~-----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
..+++++||+.+-.. .+...+++.|.+. .++.+|++|...
T Consensus 122 ~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~--------~~~~~i~~TH~~ 166 (235)
T PF00488_consen 122 EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK--------SGCFVIIATHFH 166 (235)
T ss_dssp TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT--------TT-EEEEEES-G
T ss_pred cceeeecccccCCCChhHHHHHHHHHHHHHHHh--------ccccEEEEeccc
Confidence 569999999988753 3444555555542 245677777654
No 411
>PRK12338 hypothetical protein; Provisional
Probab=96.57 E-value=0.0021 Score=57.81 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+++.|+||+|||++|+.+|+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 67789999999999999999999985
No 412
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.56 E-value=0.048 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.0
Q ss_pred CCeEEEEeecCCChHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~ 126 (247)
.|...++.||+|+|||.++-.
T Consensus 255 ~~~~~Ll~g~TGSGKT~va~l 275 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVAAL 275 (630)
T ss_pred CCccEEEECCCCCcHHHHHHH
Confidence 566789999999999998854
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.55 E-value=0.018 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++++.||+|+|||++.+.++..+.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccC
Confidence 689999999999999999988753
No 414
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.54 E-value=0.0087 Score=61.84 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=48.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-------HHHHHHH----HHHhC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-------LTNWIIS----NVTAC 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-------l~~~~~~----~l~~~ 177 (247)
..++.|++|||||++.+.+.+..-. .|. . |.... |.........+. +..++.. .-.-.
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~---~G~--~-V~g~A-----pTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~ 467 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEA---AGY--R-VVGGA-----LAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLD 467 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH---cCC--e-EEEEc-----CcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCC
Confidence 5788999999999999999877433 321 1 11111 000000000000 0111100 00011
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
+..+||+||+..++...+..|++..+.
T Consensus 468 ~~~vlVIDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 468 NKTVFVLDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHh
Confidence 347999999999999999999888864
No 415
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.54 E-value=0.0095 Score=53.75 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=55.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCCCCChHHHH---HHHHHHHHHHHHHhCCCeEEEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVSLY---RLQLTNWIISNVTACDRAIFIF 184 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~~~~~v~~~---~~~l~~~~~~~l~~~~~~vlil 184 (247)
++++.|++|+|||++++++...+.. .......+.+ +..++..+.+..+... ...+...+...+ +.....+++
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~---~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL-R~~PD~Iiv 221 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVA---SAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM-RLRPDRIIV 221 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc---CCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh-CCCCCEEEE
Confidence 6899999999999999999887632 0001111211 1233333222211100 001223343344 344578889
Q ss_pred eCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
.|+-.- +... +++.+..+. .-++.=+-+|...+.+.+.
T Consensus 222 GEiRg~--ea~~-~l~a~~tGh-------~G~itTiHA~s~~~a~~Rl 259 (323)
T PRK13833 222 GEVRDG--AALT-LLKAWNTGH-------PGGVTTIHSNTAMSALRRL 259 (323)
T ss_pred eecCCH--HHHH-HHHHHcCCC-------CceEEEECCCCHHHHHHHH
Confidence 999542 3433 566666543 1123333345555555544
No 416
>KOG0481|consensus
Probab=96.53 E-value=0.0027 Score=59.96 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=66.1
Q ss_pred HHhhcCChHHHHHHHHHHHHH----hhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcc---ccCCCCCcceeeec
Q psy1694 76 LKQHVHGQELAISHICGALKN----HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTSRFVHKFN 148 (247)
Q Consensus 76 L~~~l~Gq~~a~~~l~~~l~~----~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~---~~~g~~~~~v~~~~ 148 (247)
+...++|..+.+..+.=.+-. .+......+--.++||.|.|||.|+-+.+.+-+. +. |-.|..|.---...
T Consensus 329 IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkv--sPIaVYTSGKGSSAAGLTA 406 (729)
T KOG0481|consen 329 IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKV--SPIAVYTSGKGSSAAGLTA 406 (729)
T ss_pred cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhc--CceEEEecCCCccccccee
Confidence 333689988877766544432 1111111122347999999999999999998433 20 00111111001111
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 149 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 149 ~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
+..-.|....+- .++ ++.--++++|+.+||+|||.++-.-++-..||..+
T Consensus 407 SV~RD~~tReFy-lEG-------GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQT 456 (729)
T KOG0481|consen 407 SVIRDPSTREFY-LEG-------GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQT 456 (729)
T ss_pred eEEecCCcceEE-Eec-------ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhh
Confidence 111111110000 011 33345678999999999999987777777777654
No 417
>PRK14531 adenylate kinase; Provisional
Probab=96.53 E-value=0.0024 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++++||||+|||++++.||+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999984
No 418
>PRK14530 adenylate kinase; Provisional
Probab=96.52 E-value=0.0021 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||||+|||++|+.||+.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999884
No 419
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.52 E-value=0.0059 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=22.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
+++|.|+-|+|||+++|.+++.+
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999996
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.52 E-value=0.0022 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+|||++++.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578899999999999999988853
No 421
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.51 E-value=0.0053 Score=54.98 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++..+.++|++|+|||++++.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3455578999999999999999999885
No 422
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.51 E-value=0.02 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=21.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++.|+||+|||++|..++.....
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~ 42 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLK 42 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36888999999999999888766443
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.51 E-value=0.033 Score=50.52 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=56.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCC-CCChH---------HHHHHHHHHHHHHHHHhC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFP-NENHV---------SLYRLQLTNWIISNVTAC 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~-~~~~v---------~~~~~~l~~~~~~~l~~~ 177 (247)
++++.|++|+|||++.+++...+.. . ...+.+ +..++..+ ++..+ +.-.-.+.+.+...+ +.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~---~---~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L-R~ 234 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA---I---ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL-RL 234 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC---C---CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh-cc
Confidence 7899999999999999999887533 1 111111 11222211 01000 000001123343333 33
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
..+.+++.|+-. .+.. .+++.+..+. .-++.=+-+|...+.+.+..
T Consensus 235 ~PD~IivGEiR~--~ea~-~~l~a~~tGh-------~G~~tTiHa~s~~~ai~Rl~ 280 (332)
T PRK13900 235 RPDRIIVGELRG--AEAF-SFLRAINTGH-------PGSISTLHADSPAMAIEQLK 280 (332)
T ss_pred CCCeEEEEecCC--HHHH-HHHHHHHcCC-------CcEEEEEecCCHHHHHHHHH
Confidence 457889999975 3444 3566776653 12334444566666665543
No 424
>KOG0482|consensus
Probab=96.51 E-value=0.0035 Score=59.13 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-C---CCCCeEEEEeecCCChHHHHHHHHHHHhhc-cccCCCCCcc
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-H---NTKALAISLHGLPGTGKNYVTDFIVSSIFK-RYKDKGTSRF 143 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-~---~~kpl~lll~G~~GtGKt~~A~~la~~l~~-~~~~g~~~~~ 143 (247)
.+.|.+.+...++|..+++..|.-.+-....... + -+--.++++.|.||+.|+-+.+.+.+..-. .+-.|..|.=
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG 412 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG 412 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc
Confidence 3446666666899999888777655543221111 0 012247999999999999999999765211 0001112222
Q ss_pred eeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694 144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 207 (247)
Q Consensus 144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~ 207 (247)
|-...+....|..+... .+ -+++--+++++-.|||+|||.+.-..++-.+||..++
T Consensus 413 VGLTAAVmkDpvTgEM~-LE-------GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 413 VGLTAAVMKDPVTGEMV-LE-------GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI 468 (721)
T ss_pred cccchhhhcCCCCCeeE-ec-------cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence 22222222112111100 01 1345566789999999999999999999999998654
No 425
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.50 E-value=0.0021 Score=52.81 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.|+||+|||++|+.|++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999987
No 426
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.48 E-value=0.0023 Score=56.56 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+++.|+||+|||++|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 467889999999999999998884
No 427
>PRK13948 shikimate kinase; Provisional
Probab=96.48 E-value=0.0031 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.|..++|.|.+|+|||++++.+|+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999985
No 428
>PRK10646 ADP-binding protein; Provisional
Probab=96.47 E-value=0.0066 Score=48.91 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
......+.+.+.+.+.... +++|.|+=|+|||+++|.+++.+-
T Consensus 11 ~~~t~~l~~~la~~l~~g~------vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKACDGAT------VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhCCCCc------EEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445556666665554444 789999999999999999999964
No 429
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.46 E-value=0.0076 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.|+||+|||+++..++..+..
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~ 108 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK 108 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999887544
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.45 E-value=0.04 Score=47.06 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=19.8
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.||.|.|||++.+.++-.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=96.43 E-value=0.0026 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
-+++.||||+|||++|+.|++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999999999874
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0026 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.||||+||+|.|+.|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999999998
No 433
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.42 E-value=0.027 Score=50.95 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.4
Q ss_pred EEEeecCCChHHHHHHHHHHHhh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+++.+|||+|||+++-..+-...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~ 24 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSI 24 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 57899999999999877755433
No 434
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.42 E-value=0.0027 Score=50.41 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.2
Q ss_pred EeecCCChHHHHHHHHHHHh
Q psy1694 112 LHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 112 l~G~~GtGKt~~A~~la~~l 131 (247)
+.||||+||+++|+.||+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999983
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.29 Score=45.65 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------------ccccCCC---CChHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------------SRIHFPN---ENHVSLYRLQ 165 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------------~~l~~~~---~~~v~~~~~~ 165 (247)
+.|.++++.|=-|+||||++-.||+++-. .+...-.|..+. ..-+|+. ...+.-
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~I---- 170 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEI---- 170 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHH----
Confidence 46889999999999999999999999755 443222333221 0001221 122221
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694 166 LTNWIISNVTACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 166 l~~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~ 231 (247)
..+.+ +..+...+.++|+|=++++. ..+.+-+..+=+. ++-..++++.=+-.|-+..|.
T Consensus 171 ak~al-~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~------~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 171 AKAAL-EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV------INPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred HHHHH-HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh------cCCCeEEEEEecccchHHHHH
Confidence 12233 34555667999999998875 4555554433222 111456777777777666553
No 436
>PRK13949 shikimate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.|++|+|||++++.+|+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37889999999999999999985
No 437
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.42 E-value=0.003 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+++.|.||+|||++|+.+++.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999998874
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.41 E-value=0.0055 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=20.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.||||+|||.++..++..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3347899999999999999876554
No 439
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.41 E-value=0.0033 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++.+.||+|+|||++|+.|+..+-.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3678999999999999999999754
No 440
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.027 Score=45.64 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++.++|+..+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999998774
No 441
>PRK06217 hypothetical protein; Validated
Probab=96.40 E-value=0.0026 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
-+++.|+||+|||++|+.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999884
No 442
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.40 E-value=0.011 Score=57.21 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHhh-----cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 65 QSSNVRVLEEQLKQH-----VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 65 ~~~~~~~L~~~L~~~-----l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+...-+.+++.|+.. .+-.+++.+.|.+.... . .++|..+.++|.+|+|||++|+.|++.+.
T Consensus 351 ~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~-----r-~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 351 LTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPP-----R-HKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred eccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhcc-----c-cCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 344456677777763 34455555544443321 1 34666899999999999999999999875
No 443
>KOG2543|consensus
Probab=96.39 E-value=0.042 Score=50.41 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=38.8
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~ 148 (247)
..+.+.+..++.+...+ .+.. ..-|..+.+.|.+|||||++.+.+-+++. -+.|.++|
T Consensus 6 ~~v~~Re~qi~~L~~Ll----g~~~-~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--------~~~vw~n~ 63 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLL----GNNS-CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--------LENVWLNC 63 (438)
T ss_pred cCccchHHHHHHHHHHh----CCCC-cccceeEEEeccCCCchhHHHHHHHhhcC--------Ccceeeeh
Confidence 34566666665554333 2332 34677889999999999999999977742 25566665
No 444
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.39 E-value=0.059 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+|||++.+++.+.+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 578999999999999998877653
No 445
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.37 E-value=0.01 Score=52.00 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=39.2
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+--+..+.+.+...+..++.... .+.|.++-+.|++|+||+++|+.+...+-.
T Consensus 56 ~~~~~~~~~~~~~~~~~~l~~~~-~~~pfIIgiaGsvavGKST~ar~L~~ll~~ 108 (283)
T COG1072 56 LQLYVEARERLFAELLRFLGTNN-QQRPFIIGIAGSVAVGKSTTARILQALLSR 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-CCCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence 33355566666666666655444 678999999999999999999999888643
No 446
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.36 E-value=0.045 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+++.||||+|||++|..++..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999766544
No 447
>PRK13764 ATPase; Provisional
Probab=96.35 E-value=0.0073 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+++++||||+||||+++++++.+..
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6899999999999999999988654
No 448
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.35 E-value=0.016 Score=54.57 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=23.9
Q ss_pred HhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 175 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
.....++||+||++.+|......+...+...
T Consensus 143 ~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~ 173 (442)
T COG1061 143 LGNEFGLIIFDEVHHLPAPSYRRILELLSAA 173 (442)
T ss_pred cccccCEEEEEccccCCcHHHHHHHHhhhcc
Confidence 3346799999999999987777676666654
No 449
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.017 Score=46.10 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=46.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC------CC-CC----hHHHHHHHHHHHHHHHHHhC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF------PN-EN----HVSLYRLQLTNWIISNVTAC 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~------~~-~~----~v~~~~~~l~~~~~~~l~~~ 177 (247)
.+.+.||+|+|||++.++|+..+... .| . +.++-..... .. -. .-+..+. .-.+...+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~--~G---~-i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~--r~~l~~~l~~- 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT--SG---E-ILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ--RVALARALLL- 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--cc---E-EEECCEEcccCCHHHHHhceEEEeeCCHHHHH--HHHHHHHHhc-
Confidence 57899999999999999997654220 11 1 1111100000 00 00 1011111 1112222222
Q ss_pred CCeEEEEeCCC-CCChhhHHHHHhhccc
Q psy1694 178 DRAIFIFDEVD-KFPKGLLDVIIPFIDH 204 (247)
Q Consensus 178 ~~~vlilDEie-k~~~~~~~~Ll~~Le~ 204 (247)
+..++++||.. .++......+.+.+.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 35899999995 6777777777777765
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.33 E-value=0.033 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||+|+|||++++++...+
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 78999999999999999997764
No 451
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.32 E-value=0.0072 Score=56.91 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.|+||+|||+++..++....
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988754
No 452
>PRK13946 shikimate kinase; Provisional
Probab=96.31 E-value=0.0036 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+..+++.|.+|+|||++++.||+.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34468999999999999999999985
No 453
>PLN02840 tRNA dimethylallyltransferase
Probab=96.31 E-value=0.018 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++.++.+.||+|+|||++|..||+.+.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCC
Confidence 445788999999999999999999953
No 454
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.30 E-value=0.011 Score=47.21 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..+...+-+.+...+.... +++|.|+=|.|||+++|.+++.+-
T Consensus 8 ~~~t~~lg~~l~~~l~~g~------Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 8 EEATLALGERLAEALKAGD------VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHHHHhhCCCCC------EEEEEcCCcCChHHHHHHHHHHcC
Confidence 3445555555555544333 899999999999999999999975
No 455
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.28 E-value=0.0039 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|.|++|+|||++++.+++.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc
Confidence 58899999999999999999874
No 456
>PRK14528 adenylate kinase; Provisional
Probab=96.28 E-value=0.0035 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||||+|||++|+.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999998873
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.27 E-value=0.037 Score=44.62 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC-CC----C---ChHHHH-HHHHHH-HHHHHHHhCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-PN----E---NHVSLY-RLQLTN-WIISNVTACD 178 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~-~~----~---~~v~~~-~~~l~~-~~~~~l~~~~ 178 (247)
.+.+.||+|+|||++.+.|+..+... .| -+.++-..+.. +. . .++..+ .++.+. .+...+. .+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~--~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~-~~ 100 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPD--SG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA-RN 100 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--Ce----EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh-cC
Confidence 57899999999999999997663220 11 12222111100 00 0 000000 011111 1212222 24
Q ss_pred CeEEEEeCCC-CCChhhHHHHHhhccc
Q psy1694 179 RAIFIFDEVD-KFPKGLLDVIIPFIDH 204 (247)
Q Consensus 179 ~~vlilDEie-k~~~~~~~~Ll~~Le~ 204 (247)
..++++||-- .+++.....+...|.+
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 4899999994 5788777777777765
No 458
>PRK13975 thymidylate kinase; Provisional
Probab=96.27 E-value=0.0042 Score=51.31 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=22.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+.+.|.|++|+|||++++.|++.+-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999864
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.27 E-value=0.0039 Score=51.75 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+|..+.|.||+|+||+++++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5678899999999999999999765
No 460
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.021 Score=57.56 Aligned_cols=52 Identities=10% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCCeEEEEeCCCCCCh--hh-HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694 177 CDRAIFIFDEVDKFPK--GL-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 234 (247)
Q Consensus 177 ~~~~vlilDEiek~~~--~~-~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~ 234 (247)
..++++||||++.=+. ++ +.-++.++...+ -|.+ ++|+..+..++.+.+.+.
T Consensus 161 s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----~DLK--iIimSATld~~rfs~~f~ 215 (845)
T COG1643 161 SGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----DDLK--LIIMSATLDAERFSAYFG 215 (845)
T ss_pred ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC----CCce--EEEEecccCHHHHHHHcC
Confidence 3569999999976443 33 333333344332 1244 677777888887776653
No 461
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.26 E-value=0.024 Score=59.51 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred EEEEeecCCChHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTD 125 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~ 125 (247)
++++.|+||+|||+..=
T Consensus 84 vvii~g~TGSGKTTqlP 100 (1283)
T TIGR01967 84 VVIIAGETGSGKTTQLP 100 (1283)
T ss_pred eEEEeCCCCCCcHHHHH
Confidence 78999999999999653
No 462
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.26 E-value=0.019 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..++++.||||+|||++|..++.+...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK 49 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3347899999999999999999887554
No 463
>PTZ00424 helicase 45; Provisional
Probab=96.25 E-value=0.087 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=16.5
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|||+|||.++...+-.
T Consensus 67 d~ii~apTGsGKT~~~~l~~l~ 88 (401)
T PTZ00424 67 DTIGQAQSGTGKTATFVIAALQ 88 (401)
T ss_pred CEEEECCCCChHHHHHHHHHHH
Confidence 3578999999999877654333
No 464
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.25 E-value=0.031 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.|+||+|||+.|..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4789999999999999999876
No 465
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.24 E-value=0.052 Score=43.69 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.|....++||.|+|||.+.++++-.+..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446788999999999999998766544
No 466
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.24 E-value=0.049 Score=46.19 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
-.+.++||+|.|||++.+.++-.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 35789999999999999999754
No 467
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0035 Score=51.32 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=23.5
Q ss_pred cCCceEEEEEeCCChHHHHHHHHHHHHcC
Q psy1694 212 SFQNTIFLFLSNSGGTEIMNTFLELRKSG 240 (247)
Q Consensus 212 ~~~~~ifI~tSN~g~~~i~~~~~~~~~~g 240 (247)
.+.+.+.|=|+|..++++...+.+.+..+
T Consensus 129 ~~~~v~evdtt~~s~ee~~~~i~~ii~~~ 157 (180)
T COG1936 129 RFEAVIEVDTTNRSPEEVAEEIIDIIGGG 157 (180)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHHHccc
Confidence 44678888899999999998888887743
No 468
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.23 E-value=0.06 Score=54.51 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 178 DRAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 178 ~~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
..-++|||+++.++. .+.+.|..++...+ .+..+|++|..
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-------~~~~lv~~sR~ 161 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQP-------ENLTLVVLSRN 161 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCC-------CCeEEEEEeCC
Confidence 346889999999974 44556666666533 45566667754
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.23 E-value=0.0042 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..+.+.||+|+|||++++.++..+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998874
No 470
>PRK04182 cytidylate kinase; Provisional
Probab=96.23 E-value=0.004 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|++|+|||++|+.+|+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999874
No 471
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.22 E-value=0.004 Score=51.81 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=13.6
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
..+++|.||+|||+.|-..
T Consensus 2 I~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEEE--TTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHhHHHHHH
Confidence 4678999999999987544
No 472
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.22 E-value=0.0039 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
++++|+||+|||++|+.||+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999883
No 473
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.21 E-value=0.021 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++++||||||||+++..+..++..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~ 199 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVK 199 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999888777655
No 474
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0042 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.|.|++|+|||++.+.+|+.|.-
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 5788999999999999999999643
No 475
>PRK04328 hypothetical protein; Provisional
Probab=96.20 E-value=0.025 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.||||+|||+++..++..
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999998776555
No 476
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.19 E-value=0.0044 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.5
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
+.|.|++|||||++++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 578999999999999999887
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.18 E-value=0.0037 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+|||++++.|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999997763
No 478
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.18 E-value=0.0053 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.2
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+.|.|++|+|||+.++.|++++-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999754
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.18 E-value=0.004 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEeecCCChHHHHHHHHHHHh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l 131 (247)
+.+.||+|+|||++++.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998886
No 480
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.17 E-value=0.027 Score=46.07 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++.++|+..+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997753
No 481
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.17 E-value=0.085 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++.++|+..+
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998765
No 482
>KOG1051|consensus
Probab=96.17 E-value=0.016 Score=58.49 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=70.0
Q ss_pred hhcCCh-HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccc
Q psy1694 78 QHVHGQ-ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRI 151 (247)
Q Consensus 78 ~~l~Gq-~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l 151 (247)
..++|. +..++.+.+.+.+.-.+ +-+|.|+||+|||.++.-+++-.-. ... ...++.+++..+
T Consensus 186 dPvigr~deeirRvi~iL~Rrtk~--------NPvLVG~~gvgktaiv~gla~ri~~---G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRKTKN--------NPVLVGEPGVGKTAIVEGLAQRIAT---GDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred CCccCCchHHHHHHHHHHhccCCC--------CceEEecCCCCchhHHHHHHHHhhc---CCCCccccccceEEEEhhhc
Confidence 357887 77777777777653222 2378999999999999999888654 222 234444444332
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCc
Q psy1694 152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHA 206 (247)
Q Consensus 152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~ 206 (247)
. +...+.+.+++.++..++..-...++-|+++||++-+- .+..+.|.+.+..+.
T Consensus 255 ~-aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~ 316 (898)
T KOG1051|consen 255 V-AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG 316 (898)
T ss_pred c-cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC
Confidence 1 11222233444444444322123456788899997652 256778888887763
No 483
>KOG2680|consensus
Probab=96.17 E-value=0.01 Score=52.92 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=46.6
Q ss_pred hhcCChHHHHHHH---HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 78 QHVHGQELAISHI---CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 78 ~~l~Gq~~a~~~l---~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
..++||-.|.+.. .+.++. ++. ...++++.|+||+|||.+|-.+++.|- ...||..+.-++++..
T Consensus 40 ~GmVGQ~~AR~Aagvi~kmi~e---gki---aGraiLiaG~pgtGKtAiAmg~sksLG------~~tpF~~i~gSEI~Sl 107 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKMIRE---GKI---AGRAILIAGQPGTGKTAIAMGMSKSLG------DDTPFTSISGSEIYSL 107 (454)
T ss_pred ccchhhHHHHHHhHHHHHHHHc---Ccc---cceEEEEecCCCCCceeeeeehhhhhC------CCCceeeeecceeeee
Confidence 3589998776543 333332 211 223689999999999999999988853 3578988887777544
Q ss_pred CCC
Q psy1694 155 NEN 157 (247)
Q Consensus 155 ~~~ 157 (247)
+.+
T Consensus 108 Ems 110 (454)
T KOG2680|consen 108 EMS 110 (454)
T ss_pred ccc
Confidence 443
No 484
>PLN02459 probable adenylate kinase
Probab=96.16 E-value=0.0052 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|+.++|.||||+||++.|+.+++.+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 55678889999999999999999873
No 485
>PHA01747 putative ATP-dependent protease
Probab=96.15 E-value=0.015 Score=53.08 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHH---hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCe
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSS---IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA 180 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~---l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~ 180 (247)
.+.+.+++=.||.|||||++-+-+.+- .++ .|... .+.+++... .+ ..|.+ +.+.
T Consensus 187 ~~~NyNliELgPRGTGKS~~f~eis~fsp~~iS---GG~~T------vA~LFyN~~----------t~-~~GLV--g~~D 244 (425)
T PHA01747 187 SKRPVHIIELSNRGTGKTTTFVILQELFNFRYY---TEPPT------YANLVYDAK----------TN-ALGLV--FLSN 244 (425)
T ss_pred CCCCeeEEEecCCCCChhhHHHHhhhcCCceee---CCCCc------hHHheEecC----------CC-ceeEE--eecc
Confidence 445667777899999999999988441 111 11100 011111000 00 00111 2347
Q ss_pred EEEEeCCCCCC----hhhHHHHHhhcccCccccccc--------CCceEEEEEeCCC
Q psy1694 181 IFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQIS--------FQNTIFLFLSNSG 225 (247)
Q Consensus 181 vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~--------~~~~ifI~tSN~g 225 (247)
+|+|||+.... .++.+.|+..|+.+.+..+.. .+.+-++|.-|..
T Consensus 245 ~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin 301 (425)
T PHA01747 245 GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD 301 (425)
T ss_pred EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence 99999998864 478899999999998887753 1266788877765
No 486
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.14 E-value=0.0043 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.||||+|||++|+.||+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999887
No 487
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.12 E-value=0.0053 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEeecCCChHHHHHHHHHHHhhc
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+.|+||+|||++|+.|++.+-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999998643
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.12 E-value=0.005 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|++|+|||++|+.+++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999874
No 489
>PHA02624 large T antigen; Provisional
Probab=96.12 E-value=0.0099 Score=57.59 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=24.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..+++|+||+|||||+++.+|.+.+-+
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3448999999999999999999988633
No 490
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.11 E-value=0.033 Score=49.58 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.++.+.|++|+|||+++..++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557888999999999999999988654
No 491
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.10 E-value=0.071 Score=45.45 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=21.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+-.++|+||.|.|||++.+.++...+
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH
Confidence 34689999999999999999886643
No 492
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.10 E-value=0.1 Score=47.50 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=56.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCCChHH----------HHHHHHHHHHHHHHHhC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNENHVS----------LYRLQLTNWIISNVTAC 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~~~v~----------~~~~~l~~~~~~~l~~~ 177 (247)
++++.|++|+|||++.+++...+.. . ...+.+. ..|+..+.+..+. .-.-.+.+.+...++.
T Consensus 180 ~ili~G~tGsGKTTll~al~~~i~~---~---~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~- 252 (340)
T TIGR03819 180 AFLISGGTGSGKTTLLSALLALVAP---D---ERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRM- 252 (340)
T ss_pred eEEEECCCCCCHHHHHHHHHccCCC---C---CcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhcc-
Confidence 7899999999999999999776433 1 1111111 2222211111000 0000122334444444
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 233 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~ 233 (247)
..+.+++.|+-. ++..+ +++.+..+. .-++.=+-+|...+.+.+..
T Consensus 253 ~PD~IivGEiRg--~Ea~~-~l~a~~tGh-------~G~~tTiHA~s~~~~~~RL~ 298 (340)
T TIGR03819 253 RPDRIVVGEVRG--AEVVD-LLAALNTGH-------DGGAGTLHANSPADVPARLE 298 (340)
T ss_pred CCCeEEEeCcCc--HHHHH-HHHHHHcCC-------CceEEeeCCCCHHHHHHHHH
Confidence 447888999963 44444 467777653 11233344566666666543
No 493
>PRK15453 phosphoribulokinase; Provisional
Probab=96.07 E-value=0.0086 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++.++.+.|.||+|||++|+.+++.+-
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555789999999999999999998753
No 494
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.00 E-value=0.0072 Score=50.05 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=23.5
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..+.|.|++|+|||++++.|++.+-.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999998643
No 495
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.99 E-value=0.0061 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.|++|+|||++|+.+|+.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999884
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.98 E-value=0.0068 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.|.|++|+|||++++.|++++-.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999744
No 497
>PRK14526 adenylate kinase; Provisional
Probab=95.97 E-value=0.0065 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++|.||||+|||++++.|++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~ 23 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNE 23 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999876
No 498
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.96 E-value=0.082 Score=46.15 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..++=++||||.|||++...+.+.+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 4557889999999999999999999765
No 499
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.94 E-value=0.0073 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.+.+.||+|+|||++|+.|++.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999874
No 500
>KOG0922|consensus
Probab=95.94 E-value=0.059 Score=52.35 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHH-HHHHHHHHhhc
Q psy1694 86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNY-VTDFIVSSIFK 133 (247)
Q Consensus 86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~-~A~~la~~l~~ 133 (247)
.+.+..+.+-..+..+. ++++.|++|+|||| +-+.+++.-+.
T Consensus 51 PI~~~r~~il~~ve~nq------vlIviGeTGsGKSTQipQyL~eaG~~ 93 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQ------VLIVIGETGSGKSTQIPQYLAEAGFA 93 (674)
T ss_pred CHHHHHHHHHHHHHHCC------EEEEEcCCCCCccccHhHHHHhcccc
Confidence 33444444444444445 78899999999997 33555554333
Done!