Query psy1694
Match_columns 247
No_of_seqs 224 out of 1671
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:34:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcw_A Chaperone protein CLPB; 99.8 4.1E-21 1.4E-25 168.3 11.1 156 68-231 7-176 (311)
2 1qvr_A CLPB protein; coiled co 99.8 1.8E-20 6.1E-25 186.2 15.6 168 71-246 551-744 (854)
3 3pxi_A Negative regulator of g 99.8 6.1E-20 2.1E-24 180.1 13.0 147 69-228 482-633 (758)
4 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-19 4.5E-24 177.6 14.9 152 69-231 449-614 (758)
5 1ny5_A Transcriptional regulat 99.8 3.5E-20 1.2E-24 168.9 2.1 192 30-246 83-296 (387)
6 3n70_A Transport activator; si 99.8 7.6E-19 2.6E-23 138.6 9.4 129 79-246 2-130 (145)
7 1ojl_A Transcriptional regulat 99.7 5.2E-18 1.8E-22 149.8 8.4 147 78-246 2-161 (304)
8 3dzd_A Transcriptional regulat 99.7 6.8E-19 2.3E-23 159.5 -1.9 185 31-246 84-287 (368)
9 3hws_A ATP-dependent CLP prote 99.7 2.1E-17 7.3E-22 148.7 7.7 150 67-230 4-197 (363)
10 2bjv_A PSP operon transcriptio 99.7 3.6E-16 1.2E-20 134.3 11.5 135 79-228 7-154 (265)
11 3co5_A Putative two-component 99.7 8.9E-17 3.1E-21 126.4 6.9 115 79-228 5-119 (143)
12 3syl_A Protein CBBX; photosynt 99.7 1.3E-15 4.4E-20 133.2 14.8 142 67-225 20-179 (309)
13 1um8_A ATP-dependent CLP prote 99.6 6.9E-16 2.4E-20 139.3 9.9 148 67-224 10-211 (376)
14 3hu3_A Transitional endoplasmi 99.6 6.8E-16 2.3E-20 144.6 6.1 146 79-245 205-366 (489)
15 1ofh_A ATP-dependent HSL prote 99.6 5.6E-15 1.9E-19 128.6 10.9 148 67-224 4-177 (310)
16 3t15_A Ribulose bisphosphate c 99.6 2.3E-14 7.8E-19 125.6 13.3 121 94-226 24-166 (293)
17 3pfi_A Holliday junction ATP-d 99.6 3.8E-14 1.3E-18 125.6 14.5 124 79-226 30-165 (338)
18 4b4t_J 26S protease regulatory 99.5 3.6E-13 1.2E-17 122.8 15.4 145 79-244 149-312 (405)
19 1hqc_A RUVB; extended AAA-ATPa 99.5 2.9E-13 1E-17 118.8 13.2 123 79-225 13-148 (324)
20 3m6a_A ATP-dependent protease 99.5 1.3E-13 4.3E-18 130.7 11.2 148 69-226 72-235 (543)
21 3eie_A Vacuolar protein sortin 99.5 5.1E-13 1.7E-17 118.3 13.5 131 79-225 19-164 (322)
22 3h4m_A Proteasome-activating n 99.5 3.8E-13 1.3E-17 116.3 12.4 133 79-225 18-166 (285)
23 1d2n_A N-ethylmaleimide-sensit 99.5 1.1E-13 3.9E-18 119.2 9.0 135 75-225 30-177 (272)
24 4b4t_L 26S protease subunit RP 99.5 1.4E-12 4.9E-17 120.2 16.1 130 79-225 182-330 (437)
25 2qz4_A Paraplegin; AAA+, SPG7, 99.5 1.2E-12 4.2E-17 111.3 14.4 133 79-226 7-156 (262)
26 3b9p_A CG5977-PA, isoform A; A 99.4 1.3E-12 4.5E-17 113.6 14.2 133 79-225 22-169 (297)
27 2chg_A Replication factor C sm 99.4 8.8E-13 3E-17 108.1 12.2 120 79-225 18-142 (226)
28 4b4t_I 26S protease regulatory 99.4 1.7E-12 5.7E-17 119.1 14.9 131 79-226 183-332 (437)
29 4b4t_K 26S protease regulatory 99.4 1E-12 3.5E-17 120.9 12.8 145 79-244 173-336 (428)
30 1xwi_A SKD1 protein; VPS4B, AA 99.4 2.6E-12 8.8E-17 114.0 14.9 132 79-225 13-159 (322)
31 3vfd_A Spastin; ATPase, microt 99.4 6.6E-13 2.3E-17 120.5 11.3 132 79-225 116-262 (389)
32 4b4t_H 26S protease regulatory 99.4 2E-12 7E-17 119.5 14.2 146 79-245 210-374 (467)
33 3d8b_A Fidgetin-like protein 1 99.4 1.3E-12 4.4E-17 117.4 12.5 132 79-225 85-231 (357)
34 3uk6_A RUVB-like 2; hexameric 99.4 3.7E-12 1.3E-16 113.8 15.1 119 79-206 45-217 (368)
35 1jbk_A CLPB protein; beta barr 99.4 1.7E-12 5.8E-17 104.0 11.5 126 79-225 23-161 (195)
36 3u61_B DNA polymerase accessor 99.4 1E-12 3.4E-17 115.8 11.0 116 79-226 27-147 (324)
37 4b4t_M 26S protease regulatory 99.4 1.4E-12 4.9E-17 120.1 12.3 130 79-225 182-330 (434)
38 1iqp_A RFCS; clamp loader, ext 99.4 1.3E-12 4.4E-17 114.3 11.0 125 79-226 26-151 (327)
39 2qp9_X Vacuolar protein sortin 99.4 1.6E-12 5.4E-17 116.9 11.7 131 79-225 52-197 (355)
40 2chq_A Replication factor C sm 99.4 1.1E-12 3.8E-17 114.3 9.9 125 79-226 18-143 (319)
41 2p65_A Hypothetical protein PF 99.4 1.5E-12 5.2E-17 104.3 9.7 126 79-226 23-163 (187)
42 3cf0_A Transitional endoplasmi 99.4 6.2E-13 2.1E-17 116.7 7.8 130 79-225 16-164 (301)
43 2zan_A Vacuolar protein sortin 99.4 3.7E-12 1.2E-16 117.8 12.4 132 79-225 135-281 (444)
44 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.6E-12 5.5E-17 121.9 9.5 137 67-227 11-161 (500)
45 3pvs_A Replication-associated 99.4 2.9E-12 9.9E-17 118.7 11.1 105 79-206 27-134 (447)
46 2c9o_A RUVB-like 1; hexameric 99.3 1.7E-11 5.8E-16 113.6 15.3 51 79-132 38-88 (456)
47 1g41_A Heat shock protein HSLU 99.3 1E-11 3.4E-16 114.7 13.0 76 68-151 5-86 (444)
48 1sxj_B Activator 1 37 kDa subu 99.3 5.1E-12 1.7E-16 110.3 9.0 120 79-225 22-147 (323)
49 1sxj_C Activator 1 40 kDa subu 99.3 7E-12 2.4E-16 111.5 8.9 120 79-225 26-150 (340)
50 1lv7_A FTSH; alpha/beta domain 99.3 2.7E-11 9.3E-16 103.3 12.2 129 79-225 13-160 (257)
51 2ce7_A Cell division protein F 99.3 4.2E-11 1.4E-15 111.6 14.4 145 79-244 17-179 (476)
52 1sxj_D Activator 1 41 kDa subu 99.3 3.4E-12 1.2E-16 113.0 6.6 127 79-227 38-175 (353)
53 2gno_A DNA polymerase III, gam 99.3 1.4E-11 4.9E-16 108.6 9.8 119 82-226 1-123 (305)
54 2r44_A Uncharacterized protein 99.3 1.7E-11 5.8E-16 108.3 9.9 133 69-223 18-158 (331)
55 2r62_A Cell division protease 99.2 1.6E-12 5.4E-17 111.5 2.6 131 79-226 12-162 (268)
56 1a5t_A Delta prime, HOLB; zinc 99.2 4.8E-11 1.6E-15 106.2 11.2 122 82-225 6-148 (334)
57 1njg_A DNA polymerase III subu 99.2 1.9E-10 6.3E-15 95.0 13.7 127 79-225 24-166 (250)
58 3te6_A Regulatory protein SIR3 99.2 6.8E-11 2.3E-15 104.9 11.4 137 79-225 21-173 (318)
59 1fnn_A CDC6P, cell division co 99.2 1.4E-10 4.9E-15 103.5 12.7 138 78-225 17-169 (389)
60 2qby_B CDC6 homolog 3, cell di 99.2 2.4E-11 8.2E-16 108.7 7.5 135 78-225 20-174 (384)
61 1jr3_A DNA polymerase III subu 99.2 7.5E-11 2.6E-15 105.1 10.5 120 79-225 17-159 (373)
62 3cf2_A TER ATPase, transitiona 99.2 6.9E-11 2.4E-15 116.2 10.7 130 79-225 205-350 (806)
63 2w58_A DNAI, primosome compone 99.2 1.1E-10 3.8E-15 95.8 10.3 136 80-232 27-166 (202)
64 3f9v_A Minichromosome maintena 99.2 1.7E-12 5.6E-17 124.3 -0.9 149 70-225 287-444 (595)
65 1sxj_E Activator 1 40 kDa subu 99.2 9.9E-11 3.4E-15 103.9 10.1 124 79-226 15-175 (354)
66 1g8p_A Magnesium-chelatase 38 99.2 7E-12 2.4E-16 111.0 2.4 51 176-226 142-198 (350)
67 3pxg_A Negative regulator of g 99.2 8.8E-11 3E-15 109.2 9.7 117 79-226 181-302 (468)
68 2v1u_A Cell division control p 99.2 4.2E-11 1.4E-15 106.7 7.2 141 78-225 19-177 (387)
69 1l8q_A Chromosomal replication 99.1 9.3E-11 3.2E-15 103.3 8.6 112 107-238 37-157 (324)
70 2z4s_A Chromosomal replication 99.1 9.8E-11 3.3E-15 108.1 8.9 140 79-240 107-255 (440)
71 1sxj_A Activator 1 95 kDa subu 99.1 1.5E-10 5E-15 108.9 10.0 114 79-205 40-178 (516)
72 2dhr_A FTSH; AAA+ protein, hex 99.1 8.2E-10 2.8E-14 103.5 13.9 126 79-225 32-179 (499)
73 3ec2_A DNA replication protein 99.1 8.4E-10 2.9E-14 89.0 11.8 104 107-229 38-147 (180)
74 3k1j_A LON protease, ATP-depen 99.0 7.1E-10 2.4E-14 106.2 10.7 63 173-235 196-273 (604)
75 3cf2_A TER ATPase, transitiona 99.0 2.8E-10 9.5E-15 111.9 7.6 145 79-244 478-641 (806)
76 1qvr_A CLPB protein; coiled co 99.0 8.9E-10 3.1E-14 109.4 11.3 124 79-224 171-308 (854)
77 1ypw_A Transitional endoplasmi 99.0 7.5E-10 2.6E-14 109.4 10.5 130 79-225 205-350 (806)
78 1r6b_X CLPA protein; AAA+, N-t 99.0 7.6E-10 2.6E-14 108.3 10.2 124 79-224 187-324 (758)
79 2x8a_A Nuclear valosin-contain 99.0 5.6E-09 1.9E-13 90.5 14.6 144 80-244 12-171 (274)
80 3pxi_A Negative regulator of g 99.0 7.4E-10 2.5E-14 108.5 9.3 117 79-226 181-302 (758)
81 2qby_A CDC6 homolog 1, cell di 99.0 9.3E-10 3.2E-14 97.8 8.4 134 78-225 20-173 (386)
82 2qgz_A Helicase loader, putati 99.0 7.4E-10 2.5E-14 97.6 7.0 126 90-232 136-265 (308)
83 3bos_A Putative DNA replicatio 99.0 1.3E-09 4.5E-14 90.6 7.9 95 109-227 54-150 (242)
84 1ixz_A ATP-dependent metallopr 98.9 5.4E-09 1.8E-13 88.8 10.8 130 79-225 17-164 (254)
85 1iy2_A ATP-dependent metallopr 98.9 1.3E-08 4.3E-13 87.8 11.5 130 79-225 41-188 (278)
86 1ypw_A Transitional endoplasmi 98.9 1.6E-10 5.6E-15 114.1 -1.1 131 79-226 478-627 (806)
87 3f8t_A Predicted ATPase involv 98.8 1.1E-09 3.7E-14 101.5 3.5 134 70-225 206-349 (506)
88 2kjq_A DNAA-related protein; s 98.8 1.1E-08 3.8E-13 80.7 7.2 103 109-240 38-142 (149)
89 1in4_A RUVB, holliday junction 98.8 4.7E-08 1.6E-12 86.7 11.9 104 79-205 26-129 (334)
90 1w5s_A Origin recognition comp 98.6 2.1E-07 7.2E-12 83.6 10.0 141 78-225 22-189 (412)
91 1tue_A Replication protein E1; 98.5 5.4E-08 1.9E-12 80.9 4.9 108 91-227 45-159 (212)
92 1u0j_A DNA replication protein 98.4 4.1E-07 1.4E-11 78.5 7.4 106 89-224 88-199 (267)
93 2fna_A Conserved hypothetical 98.2 6.4E-06 2.2E-10 72.0 10.7 41 79-131 14-54 (357)
94 4akg_A Glutathione S-transfera 98.2 7.2E-06 2.4E-10 89.4 12.4 113 87-224 631-756 (2695)
95 1jr3_D DNA polymerase III, del 98.2 9.4E-06 3.2E-10 71.7 10.7 96 109-224 20-116 (343)
96 2qen_A Walker-type ATPase; unk 98.2 1.1E-05 3.9E-10 70.3 11.0 42 79-130 13-54 (350)
97 2vhj_A Ntpase P4, P4; non- hyd 98.1 1.5E-05 5.2E-10 70.5 10.9 72 109-192 125-196 (331)
98 4akg_A Glutathione S-transfera 98.1 3.5E-06 1.2E-10 91.8 8.1 102 109-226 1269-1395(2695)
99 3upu_A ATP-dependent DNA helic 98.0 2.1E-05 7.3E-10 72.5 10.4 105 82-205 29-155 (459)
100 1g5t_A COB(I)alamin adenosyltr 98.0 1.3E-05 4.4E-10 66.0 7.3 111 109-232 30-170 (196)
101 1gvn_B Zeta; postsegregational 97.9 0.00035 1.2E-08 60.5 15.3 28 104-131 30-57 (287)
102 2r2a_A Uncharacterized protein 97.9 3.1E-05 1.1E-09 63.8 7.4 25 106-130 4-28 (199)
103 3vkg_A Dynein heavy chain, cyt 97.7 0.0002 6.7E-09 79.1 12.8 98 109-225 606-717 (3245)
104 3e1s_A Exodeoxyribonuclease V, 97.7 0.00019 6.5E-09 68.2 11.0 86 109-205 206-306 (574)
105 2orw_A Thymidine kinase; TMTK, 97.7 2.8E-05 9.7E-10 63.0 4.6 27 178-204 76-102 (184)
106 1ye8_A Protein THEP1, hypothet 97.7 0.00029 1E-08 56.7 10.5 23 109-131 2-24 (178)
107 3kl4_A SRP54, signal recogniti 97.7 0.00099 3.4E-08 61.1 15.2 28 106-133 96-123 (433)
108 2fz4_A DNA repair protein RAD2 97.7 0.0006 2E-08 57.2 12.4 26 178-203 192-217 (237)
109 2b8t_A Thymidine kinase; deoxy 97.6 9.5E-05 3.2E-09 62.0 7.0 93 107-203 12-114 (223)
110 3dm5_A SRP54, signal recogniti 97.6 0.0015 5.2E-08 60.1 14.4 49 85-133 74-126 (443)
111 3cmu_A Protein RECA, recombina 97.6 0.00023 7.7E-09 75.9 10.0 79 106-191 1426-1519(2050)
112 1w36_D RECD, exodeoxyribonucle 97.5 0.00076 2.6E-08 64.4 12.6 27 178-204 262-288 (608)
113 2p5t_B PEZT; postsegregational 97.5 0.00085 2.9E-08 56.7 10.9 28 104-131 29-56 (253)
114 3vkg_A Dynein heavy chain, cyt 97.5 0.00013 4.4E-09 80.5 6.9 101 109-225 1306-1432(3245)
115 3e70_C DPA, signal recognition 97.4 0.0077 2.6E-07 53.1 16.0 29 105-133 127-155 (328)
116 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00057 2E-08 55.8 7.8 25 109-133 25-49 (235)
117 2r8r_A Sensor protein; KDPD, P 97.3 0.0015 5.2E-08 54.8 10.1 26 108-133 7-32 (228)
118 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.8E-09 57.5 3.5 25 107-131 3-27 (178)
119 1vma_A Cell division protein F 97.3 0.0094 3.2E-07 52.1 15.3 29 105-133 102-130 (306)
120 2px0_A Flagellar biosynthesis 97.3 0.0091 3.1E-07 51.8 15.0 27 106-132 104-130 (296)
121 2cdn_A Adenylate kinase; phosp 97.3 0.0002 6.9E-09 58.0 4.1 28 104-131 17-44 (201)
122 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.6E-09 56.9 4.2 27 105-131 3-29 (193)
123 2cvh_A DNA repair and recombin 97.2 0.0014 4.7E-08 53.2 8.9 21 109-129 22-42 (220)
124 2vli_A Antibiotic resistance p 97.2 0.00014 4.8E-09 57.7 2.7 27 105-131 3-29 (183)
125 2a5y_B CED-4; apoptosis; HET: 97.2 0.0019 6.5E-08 60.7 10.8 44 81-129 131-174 (549)
126 1kht_A Adenylate kinase; phosp 97.2 0.00031 1.1E-08 55.8 4.6 27 107-133 3-29 (192)
127 1vec_A ATP-dependent RNA helic 97.2 0.0039 1.3E-07 50.1 11.1 52 179-237 147-199 (206)
128 1tev_A UMP-CMP kinase; ploop, 97.2 0.00027 9.2E-09 56.3 3.8 26 106-131 2-27 (196)
129 2zr9_A Protein RECA, recombina 97.1 0.0017 6E-08 57.7 9.4 25 109-133 63-87 (349)
130 1u94_A RECA protein, recombina 97.1 0.0019 6.7E-08 57.6 9.7 25 109-133 65-89 (356)
131 3trf_A Shikimate kinase, SK; a 97.1 0.00027 9.2E-09 56.3 3.7 24 108-131 6-29 (185)
132 3tlx_A Adenylate kinase 2; str 97.1 0.00063 2.2E-08 57.2 6.1 27 105-131 27-53 (243)
133 3cmw_A Protein RECA, recombina 97.1 0.00068 2.3E-08 71.4 7.4 27 106-132 1081-1107(1706)
134 3hr8_A Protein RECA; alpha and 97.1 0.0038 1.3E-07 55.8 11.4 26 108-133 62-87 (356)
135 2c95_A Adenylate kinase 1; tra 97.1 0.00034 1.2E-08 56.0 4.1 26 106-131 8-33 (196)
136 1ly1_A Polynucleotide kinase; 97.1 0.00029 9.9E-09 55.5 3.5 24 107-130 2-25 (181)
137 2dr3_A UPF0273 protein PH0284; 97.1 0.0032 1.1E-07 51.9 9.9 25 109-133 25-49 (247)
138 1xp8_A RECA protein, recombina 97.1 0.0041 1.4E-07 55.7 11.1 25 109-133 76-100 (366)
139 3t61_A Gluconokinase; PSI-biol 97.1 0.00035 1.2E-08 56.6 3.7 26 106-131 17-42 (202)
140 1zu4_A FTSY; GTPase, signal re 97.0 0.015 5E-07 51.1 14.3 63 71-133 56-131 (320)
141 3foz_A TRNA delta(2)-isopenten 97.0 0.0033 1.1E-07 55.2 10.0 26 106-131 9-34 (316)
142 3cm0_A Adenylate kinase; ATP-b 97.0 0.00038 1.3E-08 55.4 3.6 26 106-131 3-28 (186)
143 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 56.0 3.9 26 107-132 4-29 (213)
144 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 54.4 3.6 23 109-131 3-25 (173)
145 1aky_A Adenylate kinase; ATP:A 97.0 0.0004 1.4E-08 57.1 3.8 26 106-131 3-28 (220)
146 1kag_A SKI, shikimate kinase I 97.0 0.00035 1.2E-08 54.9 3.3 24 108-131 5-28 (173)
147 3vaa_A Shikimate kinase, SK; s 97.0 0.00042 1.4E-08 56.2 3.8 24 108-131 26-49 (199)
148 1y63_A LMAJ004144AAA protein; 97.0 0.00048 1.6E-08 55.2 4.0 26 106-131 9-34 (184)
149 1qf9_A UMP/CMP kinase, protein 97.0 0.00056 1.9E-08 54.3 4.4 26 106-131 5-30 (194)
150 1nn5_A Similar to deoxythymidy 97.0 0.00048 1.6E-08 55.9 4.1 28 106-133 8-35 (215)
151 1ukz_A Uridylate kinase; trans 97.0 0.00046 1.6E-08 55.8 3.9 28 104-131 12-39 (203)
152 3iij_A Coilin-interacting nucl 97.0 0.00042 1.4E-08 55.0 3.5 26 106-131 10-35 (180)
153 2eyu_A Twitching motility prot 97.0 0.0026 9.1E-08 54.2 8.7 24 109-132 27-50 (261)
154 3llm_A ATP-dependent RNA helic 97.0 0.0077 2.6E-07 49.9 11.4 19 109-127 78-96 (235)
155 1odf_A YGR205W, hypothetical 3 97.0 0.0013 4.4E-08 57.1 6.8 45 87-133 13-57 (290)
156 1n0w_A DNA repair protein RAD5 97.0 0.0026 9E-08 52.4 8.4 22 109-130 26-47 (243)
157 1zak_A Adenylate kinase; ATP:A 97.0 0.00046 1.6E-08 56.8 3.7 26 106-131 4-29 (222)
158 2wwf_A Thymidilate kinase, put 97.0 0.00052 1.8E-08 55.6 4.0 27 106-132 9-35 (212)
159 3uie_A Adenylyl-sulfate kinase 97.0 0.00055 1.9E-08 55.5 4.1 28 106-133 24-51 (200)
160 1ak2_A Adenylate kinase isoenz 96.9 0.00055 1.9E-08 57.0 4.0 27 105-131 14-40 (233)
161 1rz3_A Hypothetical protein rb 96.9 0.0014 4.8E-08 53.2 6.3 30 104-133 19-48 (201)
162 3umf_A Adenylate kinase; rossm 96.9 0.00059 2E-08 56.9 4.0 28 104-131 26-53 (217)
163 1zd8_A GTP:AMP phosphotransfer 96.9 0.0005 1.7E-08 56.8 3.5 26 106-131 6-31 (227)
164 2bwj_A Adenylate kinase 5; pho 96.9 0.00061 2.1E-08 54.6 3.8 25 107-131 12-36 (199)
165 2v3c_C SRP54, signal recogniti 96.9 0.015 5.1E-07 53.2 13.6 29 105-133 97-125 (432)
166 1nks_A Adenylate kinase; therm 96.9 0.00066 2.3E-08 53.9 3.8 25 109-133 3-27 (194)
167 2gxq_A Heat resistant RNA depe 96.9 0.0075 2.6E-07 48.4 10.1 19 109-127 40-58 (207)
168 3jvv_A Twitching mobility prot 96.9 0.0074 2.5E-07 53.8 10.8 85 109-205 125-221 (356)
169 1bif_A 6-phosphofructo-2-kinas 96.8 0.013 4.3E-07 54.0 12.6 29 105-133 37-65 (469)
170 2iyv_A Shikimate kinase, SK; t 96.8 0.00061 2.1E-08 54.2 3.3 23 109-131 4-26 (184)
171 3tqc_A Pantothenate kinase; bi 96.8 0.0019 6.5E-08 56.9 6.7 29 104-132 89-117 (321)
172 1zuh_A Shikimate kinase; alpha 96.8 0.00072 2.5E-08 53.0 3.5 23 109-131 9-31 (168)
173 1via_A Shikimate kinase; struc 96.8 0.00068 2.3E-08 53.6 3.3 23 109-131 6-28 (175)
174 2yvu_A Probable adenylyl-sulfa 96.8 0.0012 4.2E-08 52.6 4.8 29 105-133 11-39 (186)
175 3lw7_A Adenylate kinase relate 96.8 0.00069 2.4E-08 52.6 3.2 21 109-130 3-23 (179)
176 2v54_A DTMP kinase, thymidylat 96.8 0.00065 2.2E-08 54.7 3.1 26 106-131 3-28 (204)
177 1uf9_A TT1252 protein; P-loop, 96.8 0.00087 3E-08 53.8 3.8 27 104-130 5-31 (203)
178 4eun_A Thermoresistant glucoki 96.8 0.00087 3E-08 54.3 3.8 26 106-131 28-53 (200)
179 3r20_A Cytidylate kinase; stru 96.8 0.00083 2.8E-08 56.6 3.7 27 105-131 7-33 (233)
180 1j8m_F SRP54, signal recogniti 96.8 0.063 2.2E-06 46.5 15.9 27 107-133 98-124 (297)
181 1knq_A Gluconate kinase; ALFA/ 96.8 0.0011 3.8E-08 52.2 4.3 26 106-131 7-32 (175)
182 3be4_A Adenylate kinase; malar 96.8 0.00086 3E-08 55.1 3.7 26 106-131 4-29 (217)
183 1qde_A EIF4A, translation init 96.8 0.012 4E-07 47.9 10.6 17 109-125 53-69 (224)
184 1zp6_A Hypothetical protein AT 96.8 0.00088 3E-08 53.4 3.6 25 106-130 8-32 (191)
185 3p32_A Probable GTPase RV1496/ 96.8 0.024 8.1E-07 50.2 13.2 28 106-133 78-105 (355)
186 3fb4_A Adenylate kinase; psych 96.7 0.0009 3.1E-08 54.6 3.6 23 109-131 2-24 (216)
187 3crm_A TRNA delta(2)-isopenten 96.7 0.0049 1.7E-07 54.4 8.5 25 107-131 5-29 (323)
188 2xxa_A Signal recognition part 96.7 0.071 2.4E-06 48.7 16.5 29 105-133 98-126 (433)
189 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.6E-08 54.4 4.0 25 107-131 5-29 (227)
190 3exa_A TRNA delta(2)-isopenten 96.7 0.0045 1.6E-07 54.4 8.1 25 107-131 3-27 (322)
191 3dl0_A Adenylate kinase; phosp 96.7 0.00087 3E-08 54.8 3.3 23 109-131 2-24 (216)
192 2pt5_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 51.9 3.5 23 109-131 2-24 (168)
193 1hv8_A Putative ATP-dependent 96.7 0.021 7.3E-07 49.4 12.4 23 109-131 46-68 (367)
194 2bbw_A Adenylate kinase 4, AK4 96.7 0.0011 3.6E-08 55.6 3.8 26 106-131 26-51 (246)
195 2qor_A Guanylate kinase; phosp 96.7 0.00086 2.9E-08 54.5 3.1 26 106-131 11-36 (204)
196 2j37_W Signal recognition part 96.7 0.085 2.9E-06 49.2 17.0 29 105-133 99-127 (504)
197 1e6c_A Shikimate kinase; phosp 96.7 0.00097 3.3E-08 52.2 3.3 23 109-131 4-26 (173)
198 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.9E-08 56.1 3.9 27 106-132 3-29 (260)
199 3sr0_A Adenylate kinase; phosp 96.7 0.0011 3.9E-08 54.6 3.6 24 108-131 1-24 (206)
200 1uj2_A Uridine-cytidine kinase 96.7 0.0012 4E-08 55.6 3.8 27 105-131 20-46 (252)
201 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4E-08 53.0 3.6 23 109-131 2-24 (205)
202 3c8u_A Fructokinase; YP_612366 96.6 0.0027 9.1E-08 51.8 5.7 27 106-132 21-47 (208)
203 2pbr_A DTMP kinase, thymidylat 96.6 0.0013 4.3E-08 52.4 3.6 24 109-132 2-25 (195)
204 3tau_A Guanylate kinase, GMP k 96.6 0.0013 4.5E-08 53.8 3.7 26 106-131 7-32 (208)
205 3sfz_A APAF-1, apoptotic pepti 96.6 0.0065 2.2E-07 61.3 9.6 46 79-130 125-170 (1249)
206 3a8t_A Adenylate isopentenyltr 96.6 0.0044 1.5E-07 55.0 7.3 27 106-132 39-65 (339)
207 2pez_A Bifunctional 3'-phospho 96.6 0.0015 5.3E-08 51.7 3.9 27 106-132 4-30 (179)
208 1t6n_A Probable ATP-dependent 96.6 0.011 3.9E-07 48.0 9.3 23 109-131 53-75 (220)
209 1kgd_A CASK, peripheral plasma 96.6 0.0015 5.2E-08 52.1 3.8 26 106-131 4-29 (180)
210 3b9q_A Chloroplast SRP recepto 96.6 0.0059 2E-07 53.2 7.9 50 84-133 70-126 (302)
211 2ze6_A Isopentenyl transferase 96.6 0.0013 4.6E-08 55.6 3.6 23 109-131 3-25 (253)
212 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.011 3.7E-07 52.1 9.6 23 109-131 173-195 (330)
213 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6.3E-08 52.8 4.2 27 106-132 24-50 (211)
214 2z0h_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 52.0 3.6 24 109-132 2-25 (197)
215 1xx6_A Thymidine kinase; NESG, 96.5 0.0022 7.7E-08 52.2 4.5 89 107-204 8-107 (191)
216 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.6E-08 52.4 3.6 26 106-131 5-30 (207)
217 1e4v_A Adenylate kinase; trans 96.5 0.0017 5.8E-08 53.1 3.7 23 109-131 2-24 (214)
218 3bor_A Human initiation factor 96.5 0.016 5.4E-07 48.0 9.7 19 109-127 69-87 (237)
219 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0037 1.3E-07 55.9 6.0 45 84-132 5-49 (359)
220 3cmu_A Protein RECA, recombina 96.5 0.0084 2.9E-07 64.1 9.6 27 107-133 1081-1107(2050)
221 2yhs_A FTSY, cell division pro 96.5 0.051 1.7E-06 50.6 13.9 29 105-133 291-319 (503)
222 3b6e_A Interferon-induced heli 96.5 0.0096 3.3E-07 47.8 8.1 24 109-132 50-73 (216)
223 4b3f_X DNA-binding protein smu 96.5 0.0025 8.6E-08 61.1 5.2 25 109-133 207-231 (646)
224 2z43_A DNA repair and recombin 96.5 0.0059 2E-07 53.4 7.2 23 109-131 109-131 (324)
225 1vht_A Dephospho-COA kinase; s 96.4 0.002 6.7E-08 52.7 3.7 24 106-129 3-26 (218)
226 3tr0_A Guanylate kinase, GMP k 96.4 0.0021 7.3E-08 51.6 3.8 24 107-130 7-30 (205)
227 2xb4_A Adenylate kinase; ATP-b 96.4 0.0019 6.7E-08 53.3 3.6 23 109-131 2-24 (223)
228 3asz_A Uridine kinase; cytidin 96.4 0.0024 8.2E-08 51.8 4.0 26 106-131 5-30 (211)
229 2og2_A Putative signal recogni 96.4 0.0087 3E-07 53.5 8.0 29 105-133 155-183 (359)
230 3ber_A Probable ATP-dependent 96.4 0.023 7.9E-07 47.5 10.3 19 109-127 82-100 (249)
231 3vkw_A Replicase large subunit 96.4 0.0026 8.9E-08 58.5 4.6 26 179-204 235-260 (446)
232 1q0u_A Bstdead; DEAD protein, 96.4 0.023 7.7E-07 46.2 9.9 19 109-127 43-61 (219)
233 2f6r_A COA synthase, bifunctio 96.4 0.0023 7.9E-08 55.0 3.9 26 104-129 72-97 (281)
234 3ake_A Cytidylate kinase; CMP 96.3 0.0027 9.1E-08 51.1 3.8 23 109-131 4-26 (208)
235 2ewv_A Twitching motility prot 96.3 0.0041 1.4E-07 55.7 5.3 24 109-132 138-161 (372)
236 3dkp_A Probable ATP-dependent 96.3 0.029 1E-06 46.3 10.3 19 109-127 68-86 (245)
237 1jjv_A Dephospho-COA kinase; P 96.3 0.0021 7.1E-08 52.0 3.0 22 108-129 3-24 (206)
238 2bdt_A BH3686; alpha-beta prot 96.2 0.0026 8.8E-08 50.8 3.3 22 109-130 4-25 (189)
239 4eaq_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 52.4 4.1 27 105-131 24-50 (229)
240 3nwj_A ATSK2; P loop, shikimat 96.2 0.0035 1.2E-07 53.2 4.2 23 109-131 50-72 (250)
241 1ltq_A Polynucleotide kinase; 96.2 0.0026 9E-08 54.6 3.5 24 107-130 2-25 (301)
242 1sq5_A Pantothenate kinase; P- 96.2 0.0085 2.9E-07 52.1 6.7 29 104-132 77-105 (308)
243 2eyq_A TRCF, transcription-rep 96.2 0.061 2.1E-06 55.0 14.0 25 106-130 623-647 (1151)
244 1q3t_A Cytidylate kinase; nucl 96.2 0.0033 1.1E-07 52.2 3.9 28 104-131 13-40 (236)
245 2h92_A Cytidylate kinase; ross 96.2 0.0027 9.1E-08 51.8 3.2 26 106-131 2-27 (219)
246 1v5w_A DMC1, meiotic recombina 96.2 0.015 5.2E-07 51.3 8.4 25 107-131 122-146 (343)
247 2qt1_A Nicotinamide riboside k 96.2 0.0031 1.1E-07 51.1 3.6 26 106-131 20-45 (207)
248 1rif_A DAR protein, DNA helica 96.2 0.018 6E-07 49.0 8.5 23 110-132 131-153 (282)
249 1ls1_A Signal recognition part 96.2 0.046 1.6E-06 47.2 11.2 28 106-133 97-124 (295)
250 4e22_A Cytidylate kinase; P-lo 96.2 0.0033 1.1E-07 53.0 3.8 25 107-131 27-51 (252)
251 3a00_A Guanylate kinase, GMP k 96.2 0.0026 9.1E-08 50.8 3.0 23 109-131 3-25 (186)
252 3fmo_B ATP-dependent RNA helic 96.1 0.025 8.7E-07 48.8 9.4 52 180-238 237-290 (300)
253 1nrj_B SR-beta, signal recogni 96.1 0.023 7.9E-07 45.8 8.6 27 106-132 11-37 (218)
254 3fe2_A Probable ATP-dependent 96.1 0.032 1.1E-06 46.1 9.7 19 109-127 68-86 (242)
255 3pey_A ATP-dependent RNA helic 96.1 0.026 9E-07 49.3 9.6 20 109-128 46-65 (395)
256 2if2_A Dephospho-COA kinase; a 96.1 0.0035 1.2E-07 50.5 3.4 21 109-129 3-23 (204)
257 3lda_A DNA repair protein RAD5 96.1 0.027 9.3E-07 51.0 9.6 22 109-130 180-201 (400)
258 3cmw_A Protein RECA, recombina 96.1 0.018 6.3E-07 60.8 9.4 76 108-192 733-824 (1706)
259 1gtv_A TMK, thymidylate kinase 96.0 0.0024 8.2E-08 51.7 2.2 24 109-132 2-25 (214)
260 3ney_A 55 kDa erythrocyte memb 96.0 0.0051 1.7E-07 50.4 4.0 25 106-130 18-42 (197)
261 2ocp_A DGK, deoxyguanosine kin 96.0 0.0045 1.5E-07 51.5 3.7 26 106-131 1-26 (241)
262 3eph_A TRNA isopentenyltransfe 96.0 0.027 9.2E-07 51.1 9.0 23 109-131 4-26 (409)
263 2jeo_A Uridine-cytidine kinase 96.0 0.0052 1.8E-07 51.4 4.1 26 106-131 24-49 (245)
264 2j9r_A Thymidine kinase; TK1, 96.0 0.032 1.1E-06 46.3 8.7 86 107-204 28-127 (214)
265 1a7j_A Phosphoribulokinase; tr 96.0 0.003 1E-07 54.7 2.5 27 106-132 4-30 (290)
266 3aez_A Pantothenate kinase; tr 95.9 0.014 4.6E-07 51.1 6.7 28 105-132 88-115 (312)
267 1xti_A Probable ATP-dependent 95.9 0.044 1.5E-06 48.0 10.1 22 109-130 47-68 (391)
268 2ffh_A Protein (FFH); SRP54, s 95.9 0.26 8.9E-06 44.9 15.5 28 106-133 97-124 (425)
269 3fht_A ATP-dependent RNA helic 95.9 0.047 1.6E-06 48.1 10.4 18 109-126 66-83 (412)
270 3zvl_A Bifunctional polynucleo 95.9 0.0035 1.2E-07 57.0 2.7 25 106-130 257-281 (416)
271 3io5_A Recombination and repai 95.8 0.039 1.3E-06 48.6 9.2 25 109-133 30-54 (333)
272 2oca_A DAR protein, ATP-depend 95.8 0.051 1.7E-06 49.9 10.4 24 109-132 130-153 (510)
273 1svm_A Large T antigen; AAA+ f 95.8 0.011 3.9E-07 53.1 5.7 26 106-131 168-193 (377)
274 1lvg_A Guanylate kinase, GMP k 95.8 0.0054 1.8E-07 49.7 3.3 23 109-131 6-28 (198)
275 3fho_A ATP-dependent RNA helic 95.8 0.038 1.3E-06 51.2 9.4 20 108-127 159-178 (508)
276 2grj_A Dephospho-COA kinase; T 95.8 0.0065 2.2E-07 49.4 3.7 23 108-130 13-35 (192)
277 1z6t_A APAF-1, apoptotic prote 95.8 0.0076 2.6E-07 56.6 4.6 45 79-129 125-169 (591)
278 1fuu_A Yeast initiation factor 95.7 0.052 1.8E-06 47.5 9.7 19 109-127 60-78 (394)
279 1g8f_A Sulfate adenylyltransfe 95.7 0.012 3.9E-07 55.1 5.6 62 65-132 354-420 (511)
280 3iuy_A Probable ATP-dependent 95.7 0.036 1.2E-06 45.2 8.1 19 109-127 59-77 (228)
281 2oxc_A Probable ATP-dependent 95.6 0.044 1.5E-06 44.9 8.4 18 109-126 63-80 (230)
282 3bh0_A DNAB-like replicative h 95.6 0.073 2.5E-06 46.3 10.2 25 109-133 70-94 (315)
283 1rj9_A FTSY, signal recognitio 95.6 0.0086 3E-07 52.2 4.2 28 106-133 101-128 (304)
284 4gp7_A Metallophosphoesterase; 95.6 0.0071 2.4E-07 47.8 3.3 21 106-126 8-28 (171)
285 2axn_A 6-phosphofructo-2-kinas 95.6 0.0079 2.7E-07 56.3 4.0 26 106-131 34-59 (520)
286 4edh_A DTMP kinase, thymidylat 95.6 0.009 3.1E-07 49.3 3.9 28 106-133 5-32 (213)
287 1znw_A Guanylate kinase, GMP k 95.6 0.0082 2.8E-07 48.8 3.5 24 108-131 21-44 (207)
288 1s2m_A Putative ATP-dependent 95.5 0.24 8.4E-06 43.4 13.5 22 109-130 60-81 (400)
289 3d3q_A TRNA delta(2)-isopenten 95.5 0.0082 2.8E-07 53.3 3.7 24 108-131 8-31 (340)
290 3fmp_B ATP-dependent RNA helic 95.5 0.056 1.9E-06 49.3 9.3 18 109-126 133-150 (479)
291 3ly5_A ATP-dependent RNA helic 95.5 0.077 2.6E-06 44.6 9.5 19 109-127 93-111 (262)
292 1z6g_A Guanylate kinase; struc 95.5 0.0079 2.7E-07 49.5 3.2 23 109-131 25-47 (218)
293 3lnc_A Guanylate kinase, GMP k 95.5 0.0055 1.9E-07 50.6 2.3 24 107-130 27-51 (231)
294 3cr8_A Sulfate adenylyltranfer 95.5 0.015 5.1E-07 54.9 5.4 28 106-133 368-395 (552)
295 3fdi_A Uncharacterized protein 95.4 0.01 3.4E-07 48.4 3.7 24 108-131 7-30 (201)
296 2z0m_A 337AA long hypothetical 95.4 0.07 2.4E-06 45.5 9.2 20 109-128 33-52 (337)
297 1ex7_A Guanylate kinase; subst 95.4 0.0089 3.1E-07 48.4 3.2 21 110-130 4-24 (186)
298 1p5z_B DCK, deoxycytidine kina 95.4 0.0036 1.2E-07 52.9 0.8 27 105-131 22-48 (263)
299 3lv8_A DTMP kinase, thymidylat 95.4 0.012 4E-07 49.5 3.9 28 106-133 26-53 (236)
300 3ld9_A DTMP kinase, thymidylat 95.4 0.013 4.3E-07 48.9 4.1 28 105-132 19-46 (223)
301 4a74_A DNA repair and recombin 95.3 0.011 3.7E-07 48.1 3.6 23 109-131 27-49 (231)
302 2qmh_A HPR kinase/phosphorylas 95.3 0.0088 3E-07 49.2 3.0 24 108-131 35-58 (205)
303 1htw_A HI0065; nucleotide-bind 95.3 0.013 4.6E-07 46.0 3.9 23 109-131 35-57 (158)
304 2qm8_A GTPase/ATPase; G protei 95.3 0.1 3.4E-06 46.0 10.0 28 106-133 54-81 (337)
305 1xjc_A MOBB protein homolog; s 95.3 0.015 5E-07 46.5 4.1 26 108-133 5-30 (169)
306 3v9p_A DTMP kinase, thymidylat 95.3 0.0099 3.4E-07 49.7 3.2 28 106-133 24-51 (227)
307 3eiq_A Eukaryotic initiation f 95.3 0.099 3.4E-06 46.1 10.0 20 109-128 79-98 (414)
308 2ehv_A Hypothetical protein PH 95.3 0.01 3.6E-07 48.8 3.4 22 109-130 32-53 (251)
309 3tmk_A Thymidylate kinase; pho 95.3 0.014 4.7E-07 48.4 4.0 27 106-132 4-30 (216)
310 1x6v_B Bifunctional 3'-phospho 95.3 0.013 4.5E-07 56.1 4.3 29 105-133 50-78 (630)
311 2v6i_A RNA helicase; membrane, 95.2 0.03 1E-06 50.9 6.3 22 109-130 4-26 (431)
312 1m8p_A Sulfate adenylyltransfe 95.1 0.014 4.7E-07 55.4 4.1 29 105-133 394-422 (573)
313 1s96_A Guanylate kinase, GMP k 95.1 0.015 5.1E-07 48.1 3.7 25 107-131 16-40 (219)
314 1gm5_A RECG; helicase, replica 95.1 0.12 4.2E-06 50.6 10.7 25 106-130 388-412 (780)
315 4tmk_A Protein (thymidylate ki 95.1 0.017 5.7E-07 47.7 3.9 27 107-133 3-29 (213)
316 3hdt_A Putative kinase; struct 95.1 0.018 6.2E-07 47.9 4.1 26 106-131 13-38 (223)
317 2i3b_A HCR-ntpase, human cance 95.0 0.015 5.1E-07 47.1 3.3 24 109-132 3-26 (189)
318 2j0s_A ATP-dependent RNA helic 95.0 0.14 4.8E-06 45.2 10.0 22 109-130 76-97 (410)
319 2fwr_A DNA repair protein RAD2 94.9 0.14 4.7E-06 46.5 10.0 23 109-131 110-132 (472)
320 2xau_A PRE-mRNA-splicing facto 94.9 0.11 3.6E-06 51.0 9.6 19 109-127 111-129 (773)
321 3thx_A DNA mismatch repair pro 94.9 0.19 6.6E-06 50.2 11.6 23 109-131 664-686 (934)
322 2gks_A Bifunctional SAT/APS ki 94.7 0.036 1.2E-06 52.2 5.6 28 106-133 371-398 (546)
323 2gk6_A Regulator of nonsense t 94.7 0.035 1.2E-06 53.0 5.6 25 109-133 197-221 (624)
324 2v9p_A Replication protein E1; 94.6 0.024 8.1E-07 49.5 3.9 23 109-131 128-150 (305)
325 2f1r_A Molybdopterin-guanine d 94.6 0.02 6.9E-07 45.6 3.2 25 109-133 4-28 (171)
326 3kta_A Chromosome segregation 94.6 0.025 8.5E-07 44.5 3.7 25 109-133 28-52 (182)
327 1w4r_A Thymidine kinase; type 94.6 0.073 2.5E-06 43.4 6.4 25 109-133 22-47 (195)
328 1cr0_A DNA primase/helicase; R 94.5 0.027 9.3E-07 48.1 4.0 25 109-133 37-61 (296)
329 2ged_A SR-beta, signal recogni 94.5 0.041 1.4E-06 43.2 4.8 25 106-130 47-71 (193)
330 1nlf_A Regulatory protein REPA 94.5 0.028 9.5E-07 47.8 3.9 24 109-132 32-55 (279)
331 1tq4_A IIGP1, interferon-induc 94.4 0.05 1.7E-06 49.5 5.7 41 84-130 52-92 (413)
332 3tqf_A HPR(Ser) kinase; transf 94.4 0.027 9.3E-07 45.3 3.4 22 108-129 17-38 (181)
333 2wsm_A Hydrogenase expression/ 94.3 0.04 1.4E-06 44.5 4.5 25 108-132 31-55 (221)
334 1np6_A Molybdopterin-guanine d 94.3 0.03 1E-06 44.7 3.5 25 109-133 8-32 (174)
335 2hf9_A Probable hydrogenase ni 94.3 0.085 2.9E-06 42.7 6.3 27 107-133 38-64 (226)
336 3thx_B DNA mismatch repair pro 94.2 0.24 8.1E-06 49.5 10.4 23 109-131 675-697 (918)
337 2pcj_A ABC transporter, lipopr 94.2 0.023 7.9E-07 47.1 2.7 23 109-131 32-54 (224)
338 2wjy_A Regulator of nonsense t 94.1 0.045 1.5E-06 53.9 5.1 25 109-133 373-397 (800)
339 3b85_A Phosphate starvation-in 94.1 0.024 8.2E-07 46.6 2.7 22 109-130 24-45 (208)
340 3tif_A Uncharacterized ABC tra 94.1 0.027 9.1E-07 47.1 3.0 23 109-131 33-55 (235)
341 2vp4_A Deoxynucleoside kinase; 94.1 0.019 6.6E-07 47.4 2.1 26 105-130 18-43 (230)
342 1z63_A Helicase of the SNF2/RA 94.0 0.32 1.1E-05 44.4 10.4 25 109-133 58-82 (500)
343 3gmt_A Adenylate kinase; ssgci 94.0 0.032 1.1E-06 46.7 3.3 23 109-131 10-32 (230)
344 2onk_A Molybdate/tungstate ABC 94.0 0.03 1E-06 47.0 3.1 24 108-131 25-48 (240)
345 3sop_A Neuronal-specific septi 94.0 0.039 1.3E-06 47.1 3.8 24 109-132 4-27 (270)
346 3fvq_A Fe(3+) IONS import ATP- 93.9 0.035 1.2E-06 49.5 3.6 23 109-131 32-54 (359)
347 1z2a_A RAS-related protein RAB 93.9 0.038 1.3E-06 42.0 3.4 26 106-131 4-29 (168)
348 2cbz_A Multidrug resistance-as 93.9 0.03 1E-06 46.8 3.0 23 109-131 33-55 (237)
349 4a1f_A DNAB helicase, replicat 93.9 0.13 4.6E-06 45.4 7.3 25 109-133 48-72 (338)
350 1lw7_A Transcriptional regulat 93.9 0.032 1.1E-06 49.4 3.3 24 109-132 172-195 (365)
351 2gza_A Type IV secretion syste 93.9 0.049 1.7E-06 48.4 4.5 23 109-131 177-199 (361)
352 1sky_E F1-ATPase, F1-ATP synth 93.9 0.071 2.4E-06 49.3 5.6 24 109-132 153-176 (473)
353 2p67_A LAO/AO transport system 93.8 0.28 9.5E-06 43.0 9.2 28 106-133 55-82 (341)
354 1b0u_A Histidine permease; ABC 93.8 0.033 1.1E-06 47.3 3.0 23 109-131 34-56 (262)
355 2oap_1 GSPE-2, type II secreti 93.7 0.057 2E-06 50.4 4.7 23 109-131 262-284 (511)
356 1wb9_A DNA mismatch repair pro 93.7 0.25 8.6E-06 48.6 9.4 24 109-132 609-632 (800)
357 2d2e_A SUFC protein; ABC-ATPas 93.7 0.037 1.3E-06 46.6 3.1 22 109-130 31-52 (250)
358 1ewq_A DNA mismatch repair pro 93.7 0.11 3.8E-06 50.8 6.9 24 109-132 578-601 (765)
359 3dmq_A RNA polymerase-associat 93.7 0.22 7.6E-06 49.9 9.2 25 109-133 172-196 (968)
360 4a4z_A Antiviral helicase SKI2 93.6 1.4 4.8E-05 44.3 14.9 23 109-131 56-78 (997)
361 2orv_A Thymidine kinase; TP4A 93.6 0.12 4.2E-06 43.3 6.1 27 107-133 19-45 (234)
362 1oix_A RAS-related protein RAB 93.6 0.046 1.6E-06 43.4 3.4 25 108-132 30-54 (191)
363 3rlf_A Maltose/maltodextrin im 93.6 0.042 1.4E-06 49.4 3.5 23 109-131 31-53 (381)
364 2zu0_C Probable ATP-dependent 93.6 0.045 1.5E-06 46.6 3.5 22 109-130 48-69 (267)
365 1kao_A RAP2A; GTP-binding prot 93.6 0.048 1.6E-06 41.2 3.3 24 107-130 3-26 (167)
366 1mv5_A LMRA, multidrug resista 93.6 0.039 1.3E-06 46.2 3.1 23 109-131 30-52 (243)
367 1g6h_A High-affinity branched- 93.6 0.033 1.1E-06 47.1 2.6 23 109-131 35-57 (257)
368 1z47_A CYSA, putative ABC-tran 93.6 0.038 1.3E-06 49.2 3.1 23 109-131 43-65 (355)
369 2o8b_B DNA mismatch repair pro 93.6 0.33 1.1E-05 49.0 10.2 23 108-130 790-812 (1022)
370 3gfo_A Cobalt import ATP-bindi 93.5 0.033 1.1E-06 47.8 2.6 23 109-131 36-58 (275)
371 2ce2_X GTPase HRAS; signaling 93.5 0.051 1.8E-06 40.9 3.5 23 108-130 4-26 (166)
372 1wp9_A ATP-dependent RNA helic 93.5 0.055 1.9E-06 48.2 4.1 24 109-132 25-48 (494)
373 1ji0_A ABC transporter; ATP bi 93.5 0.035 1.2E-06 46.5 2.6 23 109-131 34-56 (240)
374 2it1_A 362AA long hypothetical 93.5 0.045 1.6E-06 48.9 3.5 23 109-131 31-53 (362)
375 3l9o_A ATP-dependent RNA helic 93.5 0.98 3.4E-05 46.0 13.7 22 109-130 201-222 (1108)
376 1p9r_A General secretion pathw 93.5 0.055 1.9E-06 49.2 4.1 25 109-133 169-193 (418)
377 3d31_A Sulfate/molybdate ABC t 93.5 0.04 1.4E-06 48.9 3.1 23 109-131 28-50 (348)
378 2yyz_A Sugar ABC transporter, 93.5 0.046 1.6E-06 48.7 3.5 23 109-131 31-53 (359)
379 2xzl_A ATP-dependent helicase 93.5 0.068 2.3E-06 52.6 5.0 24 109-132 377-400 (802)
380 2ff7_A Alpha-hemolysin translo 93.5 0.035 1.2E-06 46.7 2.6 23 109-131 37-59 (247)
381 2zts_A Putative uncharacterize 93.4 0.055 1.9E-06 44.3 3.7 22 109-130 32-53 (251)
382 2olj_A Amino acid ABC transpor 93.4 0.041 1.4E-06 46.9 3.0 23 109-131 52-74 (263)
383 1v43_A Sugar-binding transport 93.4 0.047 1.6E-06 49.0 3.5 23 109-131 39-61 (372)
384 1moz_A ARL1, ADP-ribosylation 93.4 0.043 1.5E-06 42.6 2.9 24 105-128 16-39 (183)
385 3cph_A RAS-related protein SEC 93.4 0.053 1.8E-06 43.2 3.5 25 106-130 19-43 (213)
386 1fzq_A ADP-ribosylation factor 93.4 0.059 2E-06 42.3 3.7 25 105-129 14-38 (181)
387 3bc1_A RAS-related protein RAB 93.4 0.052 1.8E-06 42.2 3.3 26 105-130 9-34 (195)
388 4g1u_C Hemin import ATP-bindin 93.4 0.036 1.2E-06 47.2 2.6 23 109-131 39-61 (266)
389 2wjg_A FEOB, ferrous iron tran 93.4 0.056 1.9E-06 42.2 3.5 24 106-129 6-29 (188)
390 2pze_A Cystic fibrosis transme 93.4 0.038 1.3E-06 45.9 2.6 23 109-131 36-58 (229)
391 2nzj_A GTP-binding protein REM 93.3 0.05 1.7E-06 41.7 3.1 25 106-130 3-27 (175)
392 1g29_1 MALK, maltose transport 93.3 0.043 1.5E-06 49.1 3.1 23 109-131 31-53 (372)
393 1sgw_A Putative ABC transporte 93.3 0.036 1.2E-06 45.8 2.4 23 109-131 37-59 (214)
394 3hjn_A DTMP kinase, thymidylat 93.3 0.07 2.4E-06 43.2 4.1 25 109-133 2-26 (197)
395 2ixe_A Antigen peptide transpo 93.3 0.043 1.5E-06 46.8 3.0 23 109-131 47-69 (271)
396 3clv_A RAB5 protein, putative; 93.3 0.07 2.4E-06 41.7 4.0 26 105-130 5-30 (208)
397 2ghi_A Transport protein; mult 93.3 0.044 1.5E-06 46.5 3.0 23 109-131 48-70 (260)
398 2fn4_A P23, RAS-related protei 93.3 0.064 2.2E-06 41.2 3.7 26 105-130 7-32 (181)
399 1oyw_A RECQ helicase, ATP-depe 93.3 0.16 5.6E-06 47.2 7.1 20 109-128 42-61 (523)
400 1vpl_A ABC transporter, ATP-bi 93.3 0.045 1.5E-06 46.4 3.0 23 109-131 43-65 (256)
401 2yz2_A Putative ABC transporte 93.2 0.046 1.6E-06 46.4 3.0 23 109-131 35-57 (266)
402 1g16_A RAS-related protein SEC 93.2 0.062 2.1E-06 40.9 3.5 24 107-130 3-26 (170)
403 4hlc_A DTMP kinase, thymidylat 93.2 0.056 1.9E-06 44.2 3.3 23 109-131 4-26 (205)
404 1upt_A ARL1, ADP-ribosylation 93.2 0.072 2.5E-06 40.6 3.8 26 105-130 5-30 (171)
405 2qi9_C Vitamin B12 import ATP- 93.2 0.041 1.4E-06 46.4 2.6 23 109-131 28-50 (249)
406 1ky3_A GTP-binding protein YPT 93.2 0.06 2.1E-06 41.4 3.3 25 106-130 7-31 (182)
407 1z08_A RAS-related protein RAB 93.1 0.055 1.9E-06 41.3 3.1 25 106-130 5-29 (170)
408 1pzn_A RAD51, DNA repair and r 93.1 0.065 2.2E-06 47.4 3.9 24 108-131 132-155 (349)
409 1u8z_A RAS-related protein RAL 93.1 0.062 2.1E-06 40.6 3.4 24 107-130 4-27 (168)
410 3bgw_A DNAB-like replicative h 93.1 0.32 1.1E-05 44.4 8.6 25 109-133 199-223 (444)
411 2ihy_A ABC transporter, ATP-bi 93.1 0.042 1.4E-06 47.1 2.6 23 109-131 49-71 (279)
412 2lkc_A Translation initiation 93.1 0.064 2.2E-06 41.3 3.4 25 106-130 7-31 (178)
413 2wji_A Ferrous iron transport 93.1 0.059 2E-06 41.5 3.2 21 109-129 5-25 (165)
414 1r2q_A RAS-related protein RAB 93.1 0.049 1.7E-06 41.4 2.7 25 106-130 5-29 (170)
415 1oxx_K GLCV, glucose, ABC tran 93.1 0.041 1.4E-06 48.9 2.5 23 109-131 33-55 (353)
416 2f9l_A RAB11B, member RAS onco 93.1 0.056 1.9E-06 43.0 3.1 24 108-131 6-29 (199)
417 2hxs_A RAB-26, RAS-related pro 93.0 0.069 2.3E-06 41.1 3.5 25 106-130 5-29 (178)
418 3gd7_A Fusion complex of cysti 93.0 0.06 2.1E-06 48.5 3.6 22 109-130 49-70 (390)
419 4dsu_A GTPase KRAS, isoform 2B 93.0 0.059 2E-06 41.8 3.1 25 106-130 3-27 (189)
420 1z0j_A RAB-22, RAS-related pro 93.0 0.058 2E-06 41.0 3.0 25 106-130 5-29 (170)
421 2nq2_C Hypothetical ABC transp 93.0 0.047 1.6E-06 46.1 2.6 23 109-131 33-55 (253)
422 1m7b_A RND3/RHOE small GTP-bin 92.9 0.07 2.4E-06 41.7 3.5 26 106-131 6-31 (184)
423 1c9k_A COBU, adenosylcobinamid 92.9 0.13 4.4E-06 41.4 5.0 21 110-130 2-22 (180)
424 1yrb_A ATP(GTP)binding protein 92.9 0.091 3.1E-06 43.6 4.3 28 105-132 12-39 (262)
425 2oil_A CATX-8, RAS-related pro 92.8 0.069 2.3E-06 42.0 3.3 25 106-130 24-48 (193)
426 2y8e_A RAB-protein 6, GH09086P 92.8 0.069 2.4E-06 41.0 3.2 25 106-130 13-37 (179)
427 1c1y_A RAS-related protein RAP 92.8 0.075 2.6E-06 40.3 3.4 23 108-130 4-26 (167)
428 2erx_A GTP-binding protein DI- 92.8 0.069 2.4E-06 40.6 3.2 23 107-129 3-25 (172)
429 3tw8_B RAS-related protein RAB 92.8 0.06 2.1E-06 41.4 2.8 24 106-129 8-31 (181)
430 1ko7_A HPR kinase/phosphatase; 92.8 0.13 4.3E-06 45.1 5.2 23 108-130 145-167 (314)
431 2pjz_A Hypothetical protein ST 92.8 0.051 1.8E-06 46.2 2.6 23 109-131 32-54 (263)
432 2dyk_A GTP-binding protein; GT 92.8 0.068 2.3E-06 40.3 3.1 22 109-130 3-24 (161)
433 2xgj_A ATP-dependent RNA helic 92.7 2 6.8E-05 43.3 14.5 22 109-130 103-124 (1010)
434 1svi_A GTP-binding protein YSX 92.7 0.079 2.7E-06 41.5 3.5 25 106-130 22-46 (195)
435 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.062 2.1E-06 41.3 2.8 25 106-130 6-30 (177)
436 1h65_A Chloroplast outer envel 92.7 0.17 5.8E-06 42.6 5.8 24 106-129 38-61 (270)
437 1ek0_A Protein (GTP-binding pr 92.7 0.068 2.3E-06 40.6 3.0 23 108-130 4-26 (170)
438 2i1q_A DNA repair and recombin 92.6 0.086 2.9E-06 45.6 3.9 23 108-130 99-121 (322)
439 2g6b_A RAS-related protein RAB 92.6 0.077 2.6E-06 40.9 3.2 26 105-130 8-33 (180)
440 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.1 3.6E-06 40.2 4.0 25 109-133 25-49 (149)
441 2zej_A Dardarin, leucine-rich 92.6 0.062 2.1E-06 42.2 2.7 21 109-129 4-24 (184)
442 1z0f_A RAB14, member RAS oncog 92.5 0.084 2.9E-06 40.5 3.3 25 106-130 14-38 (179)
443 2db3_A ATP-dependent RNA helic 92.5 0.58 2E-05 42.1 9.4 17 109-125 95-111 (434)
444 3bwd_D RAC-like GTP-binding pr 92.4 0.096 3.3E-06 40.4 3.5 25 106-130 7-31 (182)
445 2bbs_A Cystic fibrosis transme 92.4 0.073 2.5E-06 46.0 3.1 23 109-131 66-88 (290)
446 2efe_B Small GTP-binding prote 92.3 0.081 2.8E-06 40.8 3.1 25 106-130 11-35 (181)
447 3con_A GTPase NRAS; structural 92.3 0.078 2.7E-06 41.5 3.0 24 107-130 21-44 (190)
448 3def_A T7I23.11 protein; chlor 92.3 0.2 6.9E-06 41.9 5.7 25 106-130 35-59 (262)
449 1pui_A ENGB, probable GTP-bind 92.3 0.054 1.9E-06 43.2 2.0 25 106-130 25-49 (210)
450 2atv_A RERG, RAS-like estrogen 92.3 0.1 3.5E-06 41.2 3.6 25 106-130 27-51 (196)
451 2p5s_A RAS and EF-hand domain 92.2 0.097 3.3E-06 41.5 3.5 26 105-130 26-51 (199)
452 2www_A Methylmalonic aciduria 92.2 0.3 1E-05 43.0 7.0 26 107-132 74-99 (349)
453 2bme_A RAB4A, RAS-related prot 92.2 0.092 3.1E-06 40.8 3.2 25 106-130 9-33 (186)
454 3lxx_A GTPase IMAP family memb 92.2 0.085 2.9E-06 43.4 3.2 25 106-130 28-52 (239)
455 2gj8_A MNME, tRNA modification 92.2 0.1 3.5E-06 40.6 3.4 23 108-130 5-27 (172)
456 1m2o_B GTP-binding protein SAR 92.2 0.099 3.4E-06 41.3 3.4 25 106-130 22-46 (190)
457 2a9k_A RAS-related protein RAL 92.1 0.099 3.4E-06 40.4 3.4 25 106-130 17-41 (187)
458 3tkl_A RAS-related protein RAB 92.1 0.098 3.3E-06 41.0 3.3 25 106-130 15-39 (196)
459 3ice_A Transcription terminati 92.1 0.12 4.2E-06 46.8 4.2 25 109-133 176-200 (422)
460 1p6x_A Thymidine kinase; P-loo 92.1 0.059 2E-06 47.6 2.1 27 106-132 6-32 (334)
461 3q72_A GTP-binding protein RAD 92.0 0.085 2.9E-06 40.0 2.8 20 109-128 4-23 (166)
462 3t5g_A GTP-binding protein RHE 92.0 0.093 3.2E-06 40.6 3.0 25 106-130 5-29 (181)
463 2b6h_A ADP-ribosylation factor 92.0 0.11 3.9E-06 41.0 3.6 23 106-128 28-50 (192)
464 3kkq_A RAS-related protein M-R 92.0 0.12 4.2E-06 40.0 3.7 25 106-130 17-41 (183)
465 2zpa_A Uncharacterized protein 92.0 0.27 9.2E-06 47.3 6.7 78 109-200 194-277 (671)
466 2bov_A RAla, RAS-related prote 92.0 0.11 3.9E-06 40.9 3.6 25 106-130 13-37 (206)
467 3tui_C Methionine import ATP-b 91.9 0.1 3.4E-06 46.7 3.5 23 109-131 56-78 (366)
468 3h1t_A Type I site-specific re 91.9 0.32 1.1E-05 45.5 7.2 25 109-133 200-224 (590)
469 1vt4_I APAF-1 related killer D 91.9 0.17 5.7E-06 51.5 5.4 42 81-129 131-172 (1221)
470 1z06_A RAS-related protein RAB 91.9 0.11 3.7E-06 40.7 3.3 25 106-130 19-43 (189)
471 1ksh_A ARF-like protein 2; sma 91.9 0.11 3.7E-06 40.5 3.3 24 106-129 17-40 (186)
472 2fg5_A RAB-22B, RAS-related pr 91.9 0.1 3.5E-06 41.1 3.2 25 106-130 22-46 (192)
473 3nh6_A ATP-binding cassette SU 91.8 0.074 2.5E-06 46.3 2.5 23 109-131 82-104 (306)
474 3ch4_B Pmkase, phosphomevalona 91.8 0.14 4.7E-06 42.0 3.9 24 108-131 12-35 (202)
475 2gf0_A GTP-binding protein DI- 91.8 0.14 4.8E-06 40.1 4.0 25 106-130 7-31 (199)
476 1vg8_A RAS-related protein RAB 91.8 0.11 3.8E-06 41.1 3.3 25 106-130 7-31 (207)
477 1f6b_A SAR1; gtpases, N-termin 91.8 0.11 3.9E-06 41.3 3.4 24 106-129 24-47 (198)
478 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.092 3.1E-06 48.3 3.2 23 109-131 140-162 (460)
479 3pqc_A Probable GTP-binding pr 91.8 0.13 4.3E-06 40.1 3.6 22 109-130 25-46 (195)
480 3reg_A RHO-like small GTPase; 91.7 0.1 3.6E-06 41.0 3.1 25 106-130 22-46 (194)
481 3oes_A GTPase rhebl1; small GT 91.7 0.12 4.1E-06 41.0 3.5 25 106-130 23-47 (201)
482 3e2i_A Thymidine kinase; Zn-bi 91.7 0.12 4.2E-06 42.8 3.5 28 178-205 101-128 (219)
483 1zd9_A ADP-ribosylation factor 91.7 0.11 3.9E-06 40.7 3.2 25 106-130 21-45 (188)
484 2a5j_A RAS-related protein RAB 91.6 0.12 3.9E-06 40.7 3.3 25 106-130 20-44 (191)
485 1zj6_A ADP-ribosylation factor 91.6 0.14 4.6E-06 40.1 3.6 24 106-129 15-38 (187)
486 3q85_A GTP-binding protein REM 91.6 0.097 3.3E-06 39.8 2.7 20 109-128 4-23 (169)
487 3t1o_A Gliding protein MGLA; G 91.6 0.1 3.6E-06 40.6 2.9 24 107-130 14-37 (198)
488 3a1s_A Iron(II) transport prot 91.6 0.092 3.1E-06 44.3 2.7 25 105-129 3-27 (258)
489 2yv5_A YJEQ protein; hydrolase 91.6 0.16 5.6E-06 43.8 4.4 20 109-128 167-186 (302)
490 3cio_A ETK, tyrosine-protein k 91.6 0.4 1.4E-05 41.2 6.8 28 106-133 103-131 (299)
491 2gf9_A RAS-related protein RAB 91.6 0.12 4.2E-06 40.4 3.3 24 107-130 22-45 (189)
492 3qks_A DNA double-strand break 91.5 0.15 5.2E-06 41.3 4.0 25 109-133 25-49 (203)
493 3c5c_A RAS-like protein 12; GD 91.5 0.13 4.3E-06 40.5 3.3 25 106-130 20-44 (187)
494 1r8s_A ADP-ribosylation factor 91.5 0.12 4E-06 39.1 3.1 24 109-132 2-25 (164)
495 2h17_A ADP-ribosylation factor 91.5 0.12 3.9E-06 40.3 3.0 26 105-130 19-44 (181)
496 3ug7_A Arsenical pump-driving 91.5 0.19 6.5E-06 44.3 4.8 26 108-133 27-52 (349)
497 2bcg_Y Protein YP2, GTP-bindin 91.4 0.13 4.5E-06 40.8 3.4 25 106-130 7-31 (206)
498 2ew1_A RAS-related protein RAB 91.4 0.13 4.6E-06 41.2 3.4 27 106-132 25-51 (201)
499 2fh5_B SR-beta, signal recogni 91.4 0.13 4.3E-06 41.2 3.3 27 106-132 6-32 (214)
500 3ihw_A Centg3; RAS, centaurin, 91.4 0.14 4.9E-06 40.2 3.5 26 106-131 19-44 (184)
No 1
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.84 E-value=4.1e-21 Score=168.34 Aligned_cols=156 Identities=19% Similarity=0.352 Sum_probs=120.2
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
.+..+++.+.+.++||+.+++.+...+......-..+.+|. .++|+||||||||++|+++|+.+.. . ..+++.+
T Consensus 7 ~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~--~~~~~~~ 81 (311)
T 4fcw_A 7 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRI 81 (311)
T ss_dssp HHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---C--GGGEEEE
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---C--CcceEEe
Confidence 35678899999999999999999999987654322255675 6999999999999999999998754 2 3578888
Q ss_pred ecccccC---------CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694 147 FNSRIHF---------PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 213 (247)
Q Consensus 147 ~~~~l~~---------~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~ 213 (247)
+|+.+.. ..++.++ +.. .+.+.+.+..++++++||||++++++.+++.|+++|+++.+.+. +++
T Consensus 82 ~~~~~~~~~~~~~l~g~~~~~~~-~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 82 DMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp EGGGCCSTTHHHHHHCCCTTSTT-TTT--CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ecccccccccHHHhcCCCCcccc-ccc--cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 8865421 1122211 110 13455667788899999999999999999999999999876543 688
Q ss_pred CceEEEEEeCCChHHHHH
Q psy1694 214 QNTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 214 ~~~ifI~tSN~g~~~i~~ 231 (247)
++++||+|||.+++.|++
T Consensus 159 ~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp TTEEEEEEESTTHHHHHT
T ss_pred CCcEEEEecccCHHHHHh
Confidence 999999999998776655
No 2
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.84 E-value=1.8e-20 Score=186.21 Aligned_cols=168 Identities=18% Similarity=0.304 Sum_probs=125.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc
Q psy1694 71 VLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS 149 (247)
Q Consensus 71 ~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~ 149 (247)
.+++.+...++||+.+++.+..++......-.+|++|. .++|+||||||||++|+++++.++. . ..+|+.++|+
T Consensus 551 ~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~--~~~~i~i~~~ 625 (854)
T 1qvr_A 551 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRIDMT 625 (854)
T ss_dssp SHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEEECTT
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CCcEEEEech
Confidence 35667778899999999999999987654433366776 6999999999999999999999765 2 3588999886
Q ss_pred cc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCce
Q psy1694 150 RI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNT 216 (247)
Q Consensus 150 ~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ 216 (247)
++ ++.++++++ |.. .+.+.+.+...+++||||||++++++++++.|+++|++++++++ +|++++
T Consensus 626 ~~~~~~~~s~l~g~~~~~~G-~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ 702 (854)
T 1qvr_A 626 EYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNT 702 (854)
T ss_dssp TCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred hccchhHHHHHcCCCCCCcC-ccc--cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCe
Confidence 54 233344444 222 24566777888899999999999999999999999999987653 589999
Q ss_pred EEEEEeCCChHHHHH---------HHHHHH---HcCcccccC
Q psy1694 217 IFLFLSNSGGTEIMN---------TFLELR---KSGERYITI 246 (247)
Q Consensus 217 ifI~tSN~g~~~i~~---------~~~~~~---~~g~~Re~~ 246 (247)
++|+|||.|++.+.+ .+.+.+ .++.+|+|+
T Consensus 703 iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l 744 (854)
T 1qvr_A 703 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEF 744 (854)
T ss_dssp EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHH
T ss_pred EEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHH
Confidence 999999999887754 234444 477777754
No 3
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.82 E-value=6.1e-20 Score=180.14 Aligned_cols=147 Identities=18% Similarity=0.327 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 147 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~ 147 (247)
...+++.+...++||+.+++.+.+++.........|.+|. .++|+||||||||++|+++|+.++. . ..+|+.++
T Consensus 482 l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~--~~~~i~i~ 556 (758)
T 3pxi_A 482 LLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---D--EESMIRID 556 (758)
T ss_dssp C-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---C--TTCEEEEE
T ss_pred HHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CcceEEEe
Confidence 3457788889999999999999999987654444467887 5999999999999999999999765 2 46899999
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeC
Q psy1694 148 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN 223 (247)
Q Consensus 148 ~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN 223 (247)
|+++....... .+.+.+.+..++++|||||||+++++++++.|+++|+++.+++. +++.++++|+|||
T Consensus 557 ~s~~~~~~~~~--------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 557 MSEYMEKHSTS--------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp GGGGCSSCCCC-----------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred chhcccccccc--------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 98875444332 23344567788899999999999999999999999999887653 5889999999999
Q ss_pred CChHH
Q psy1694 224 SGGTE 228 (247)
Q Consensus 224 ~g~~~ 228 (247)
.+++.
T Consensus 629 ~~~~~ 633 (758)
T 3pxi_A 629 VGASE 633 (758)
T ss_dssp SSTTC
T ss_pred CChhh
Confidence 88753
No 4
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.81 E-value=1.3e-19 Score=177.62 Aligned_cols=152 Identities=20% Similarity=0.303 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 147 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~ 147 (247)
...+++.+...++||+.+++.+..++.....+-.++++|. .++|+||||||||++|+++|+.+. .+|+.++
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--------~~~~~i~ 520 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRFD 520 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--------CEEEEEE
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--------CCEEEEe
Confidence 4567788888999999999999999886544333366776 599999999999999999999862 3788888
Q ss_pred cccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCC
Q psy1694 148 NSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQ 214 (247)
Q Consensus 148 ~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~ 214 (247)
|+++ .+.++++++ |.. .+.+.+.+..++++||||||++++++++++.|+++||++.++++ ++++
T Consensus 521 ~s~~~~~~~~~~l~g~~~g~~g-~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 521 MSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp GGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred chhhcchhhHhhhcCCCCCCcC-ccc--cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 7654 344556665 332 34556778889999999999999999999999999999876643 5889
Q ss_pred ceEEEEEeCCChHHHHH
Q psy1694 215 NTIFLFLSNSGGTEIMN 231 (247)
Q Consensus 215 ~~ifI~tSN~g~~~i~~ 231 (247)
+++||+|||.+.+.+.+
T Consensus 598 ~~~iI~tsN~~~~~~~~ 614 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETER 614 (758)
T ss_dssp TEEEEEEECSSCC----
T ss_pred CeEEEEecCcchhhhhh
Confidence 99999999998866553
No 5
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.77 E-value=3.5e-20 Score=168.94 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=130.3
Q ss_pred HHHHHhhhhccCcccccc------ceeeeeccCCCCCccccccccHHHHHHHHH---hhcCChHHHHHHHHHHHHHhhhc
Q psy1694 30 GIAIAAGIAYFSPSIINS------KFLNGFGGGEACTDKFIQSSNVRVLEEQLK---QHVHGQELAISHICGALKNHFQN 100 (247)
Q Consensus 30 ~~~~av~a~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~---~~l~Gq~~a~~~l~~~l~~~~~~ 100 (247)
....++.|++.||+||+. .+...+. ++++.+. ...+...++..+. ..++|++.+++.+.+.+......
T Consensus 83 ~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~--~~l~~~~-l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~~ 159 (387)
T 1ny5_A 83 TIKTAVEAMKMGAYDFLTKPCMLEEIELTIN--KAIEHRK-LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCA 159 (387)
T ss_dssp CHHHHHHHHTTTCCEEEEESCCHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHhcCceEEecCCCCHHHHHHHHH--HHHHHHH-HHHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcCC
Confidence 467889999999999983 3333333 3322221 1111222333322 24899999999999988886544
Q ss_pred ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHHH
Q psy1694 101 RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWII 171 (247)
Q Consensus 101 ~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~~ 171 (247)
.. .+++.|++||||+++|+.++.. + .+...||+.++|+.+ +++..+. |.+... ...
T Consensus 160 ~~------~vli~Ge~GtGK~~lAr~ih~~--s---~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~---~tga~~-~~~ 224 (387)
T 1ny5_A 160 EC------PVLITGESGVGKEVVARLIHKL--S---DRSKEPFVALNVASIPRDIFEAELFGYEKGA---FTGAVS-SKE 224 (387)
T ss_dssp CS------CEEEECSTTSSHHHHHHHHHHH--S---TTTTSCEEEEETTTSCHHHHHHHHHCBCTTS---STTCCS-CBC
T ss_pred CC------CeEEecCCCcCHHHHHHHHHHh--c---CCCCCCeEEEecCCCCHHHHHHHhcCCCCCC---CCCccc-ccC
Confidence 43 5699999999999999999654 4 455679999999654 3333322 111100 112
Q ss_pred HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
+.+..+.++++|||||+.||+++|.+|+++|+++.+.. + ....++.+|++||.. +.+.+++|+||+||
T Consensus 225 g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-------l~~~~~~g~fr~dl 296 (387)
T 1ny5_A 225 GFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN-------IKELVKEGKFREDL 296 (387)
T ss_dssp CHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC-------HHHHHHTTSSCHHH
T ss_pred CceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC-------HHHHHHcCCccHHH
Confidence 45677888999999999999999999999999986542 1 112345588988764 44677899999985
No 6
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.77 E-value=7.6e-19 Score=138.58 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=96.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+.+.+......+. .++|+||||||||++|+++++. . .+...+|+ ++|+.+... .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~------~vll~G~~GtGKt~lA~~i~~~--~---~~~~~~~v-~~~~~~~~~--~- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDI------AVWLYGAPGTGRMTGARYLHQF--G---RNAQGEFV-YRELTPDNA--P- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCS------CEEEESSTTSSHHHHHHHHHHS--S---TTTTSCCE-EEECCTTTS--S-
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCCHHHHHHHHHHh--C---CccCCCEE-EECCCCCcc--h-
Confidence 489999999999999988765444 6899999999999999999765 2 33356899 998875332 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK 238 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~ 238 (247)
...+.+..+.++++||||++.+++..|..|+++|+... .+..+|++||...+ +...
T Consensus 67 ----------~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-------~~~~~I~~t~~~~~-------~~~~ 122 (145)
T 3n70_A 67 ----------QLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-------RPFRLIGIGDTSLV-------ELAA 122 (145)
T ss_dssp ----------CHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-------CSSCEEEEESSCHH-------HHHH
T ss_pred ----------hhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-------CCEEEEEECCcCHH-------HHHH
Confidence 11233445567899999999999999999999996543 45568999987544 4455
Q ss_pred cCcccccC
Q psy1694 239 SGERYITI 246 (247)
Q Consensus 239 ~g~~Re~~ 246 (247)
+|++|+|+
T Consensus 123 ~~~~~~~L 130 (145)
T 3n70_A 123 SNHIIAEL 130 (145)
T ss_dssp HSCCCHHH
T ss_pred cCCCCHHH
Confidence 67777664
No 7
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.73 E-value=5.2e-18 Score=149.79 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=103.6
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc------
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------ 151 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------ 151 (247)
..++|++.+++.+.+.+......+. .++|+||||||||++|+++++.. .+...||+.++|+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~------~vLi~Ge~GtGKt~lAr~i~~~~-----~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDA------TVLIHGDSGTGKELVARALHACS-----ARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTS------CEEEESCTTSCHHHHHHHHHHHS-----SCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCC------cEEEECCCCchHHHHHHHHHHhC-----cccCCCeEEEeCCCCChHHHH
Confidence 3589999999999999987754443 68999999999999999998763 334578999998654
Q ss_pred ---cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c---ccCCceEEEEEeCC
Q psy1694 152 ---HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNS 224 (247)
Q Consensus 152 ---~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~---~~~~~~ifI~tSN~ 224 (247)
++..++. |.+... ...+.+..+.++++||||++.+++..|.+|+++|+++.+.. + ....++.+|++||.
T Consensus 71 ~~lfg~~~g~---~tg~~~-~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 71 SELFGHEKGA---FTGADK-RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp HHHTCCCSSC---CC---C-CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred HHhcCccccc---cCchhh-hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 2222221 111111 11133455567899999999999999999999999976432 1 11235679999987
Q ss_pred ChHHHHHHHHHHHHcCcccccC
Q psy1694 225 GGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 225 g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
. +.+.+++|++|+||
T Consensus 147 ~-------l~~~v~~g~fr~~L 161 (304)
T 1ojl_A 147 D-------LAEEVSAGRFRQDL 161 (304)
T ss_dssp C-------HHHHHHHTSSCHHH
T ss_pred c-------HHHHHHhCCcHHHH
Confidence 5 33556678888765
No 8
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.69 E-value=6.8e-19 Score=159.47 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=121.2
Q ss_pred HHHHhhhhccCccccccc------eeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCC
Q psy1694 31 IAIAAGIAYFSPSIINSK------FLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHN 104 (247)
Q Consensus 31 ~~~av~a~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~ 104 (247)
...++.|++.||++|+.+ +...+. +++.... ...... -...++|++.++..+...+........
T Consensus 84 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~--~~l~~~~-~~~~~~-----~~~~~ig~s~~~~~~~~~~~~~a~~~~-- 153 (368)
T 3dzd_A 84 VDTAVKAIKKGAYEFLEKPFSVERFLLTIK--HAFEEYS-KKAPPQ-----EEIEFVGEHPKILEIKRLIPKIAKSKA-- 153 (368)
T ss_dssp CHHHHHHHHHTCCEEEESSCCHHHHHHHHH--HHHHHHS-CCCCCC-----CCCCCCCCSHHHHHHHHHHHHHHTSCS--
T ss_pred HHHHHHHHhcCcceEEeCCCCHHHHHHHHH--HHHHHhh-hhhccc-----ccccccccchHHHHHHhhhhhhhccch--
Confidence 467789999999999832 222221 1111000 000000 012478999999999888887765544
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWIISNVT 175 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~ 175 (247)
.+++.|++||||+.+|+++++. + .+ ..+|+.++|+.+ +++..+.+ ++... .-.+.++
T Consensus 154 ----~vli~GesGtGKe~lAr~ih~~--s---~r-~~~fv~vnc~~~~~~~~~~~lfg~~~g~~---tga~~-~~~g~~~ 219 (368)
T 3dzd_A 154 ----PVLITGESGTGKEIVARLIHRY--S---GR-KGAFVDLNCASIPQELAESELFGHEKGAF---TGALT-RKKGKLE 219 (368)
T ss_dssp ----CEEEECCTTSSHHHHHHHHHHH--H---CC-CSCEEEEESSSSCTTTHHHHHHEECSCSS---SSCCC-CEECHHH
T ss_pred ----hheEEeCCCchHHHHHHHHHHh--c---cc-cCCcEEEEcccCChHHHHHHhcCcccccc---CCccc-ccCChHh
Confidence 5789999999999999999665 3 22 234999999765 22222111 10000 0124567
Q ss_pred hCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI 246 (247)
Q Consensus 176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~ 246 (247)
.+.++++|||||+.||+.+|.+|+++|+++.+..- ...-++-+|++||. .+.+.+++|+||+||
T Consensus 220 ~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~-------~l~~~v~~g~fr~dL 287 (368)
T 3dzd_A 220 LADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK-------NLEEEIKKGNFREDL 287 (368)
T ss_dssp HTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS-------CHHHHHHTTSSCHHH
T ss_pred hcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC-------CHHHHHHcCCccHHH
Confidence 78889999999999999999999999999865421 01123458888864 566788999999986
No 9
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=2.1e-17 Score=148.69 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~ 139 (247)
.+.+.+++.|++.++||+.+++.+..++..+..... ....+..++|+||||||||++|+++|+.+.
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------- 76 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------- 76 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-------
Confidence 346778889999999999999999998864322110 011344689999999999999999998852
Q ss_pred CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH-------hCCCeEEEEeCCCCCChh--------------hHHHH
Q psy1694 140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------ACDRAIFIFDEVDKFPKG--------------LLDVI 198 (247)
Q Consensus 140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-------~~~~~vlilDEiek~~~~--------------~~~~L 198 (247)
.+|+.++|+.+. ..++++.. ..+.+.+.+. .+.++++||||++++++. +|+.|
T Consensus 77 -~~~~~~~~~~l~--~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~L 150 (363)
T 3hws_A 77 -VPFTMADATTLT--EAGYVGED---VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQAL 150 (363)
T ss_dssp -CCEEEEEHHHHT--TCHHHHHH---HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHH
T ss_pred -CCEEEechHHhc--cccccccc---HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHH
Confidence 489999988763 22233311 1223333333 335689999999999987 99999
Q ss_pred HhhcccCccc---------------ccccCCceEEEEEeCC-ChHHHH
Q psy1694 199 IPFIDHHAVY---------------NQISFQNTIFLFLSNS-GGTEIM 230 (247)
Q Consensus 199 l~~Le~~~~~---------------~~~~~~~~ifI~tSN~-g~~~i~ 230 (247)
+++|| +... .-+...|.+||+++|. +.+.+.
T Consensus 151 l~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i 197 (363)
T 3hws_A 151 LKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVI 197 (363)
T ss_dssp HHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHH
T ss_pred HHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHH
Confidence 99999 3311 0125566777777776 544443
No 10
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=3.6e-16 Score=134.34 Aligned_cols=135 Identities=10% Similarity=0.085 Sum_probs=91.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 152 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------ 152 (247)
.++|++.+++.+.+.+......+. .++|+||||||||++|+++++.+. +...+|+.++|+.+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~------~vll~G~~GtGKt~la~~i~~~~~-----~~~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDK------PVLIIGERGTGKELIASRLHYLSS-----RWQGPFISLNCAALNENLLDS 75 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCS------CEEEECCTTSCHHHHHHHHHHTST-----TTTSCEEEEEGGGSCHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHHhcC-----ccCCCeEEEecCCCChhHHHH
Confidence 378999999999988887654443 689999999999999999987642 234689999987651
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694 153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 225 (247)
Q Consensus 153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g 225 (247)
+...+ .|.+... ...+.+..+.++++||||+++++++.|+.|+++|+++.+... ....+..+|++||..
T Consensus 76 ~l~g~~~~---~~~g~~~-~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 ELFGHEAG---AFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp HHHCCC-------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred HhcCCccc---ccccccc-cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 11111 0111100 011334556779999999999999999999999998754321 112356799999987
Q ss_pred hHH
Q psy1694 226 GTE 228 (247)
Q Consensus 226 ~~~ 228 (247)
.+.
T Consensus 152 ~~~ 154 (265)
T 2bjv_A 152 LPA 154 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 11
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.66 E-value=8.9e-17 Score=126.43 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=87.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+.+.+......+. .++|+||||||||++|+++++. . . +|+.++|+.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~------~vll~G~~GtGKt~lA~~i~~~--~------~-~~~~~~~~~~~~----- 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTS------PVFLTGEAGSPFETVARYFHKN--G------T-PWVSPARVEYLI----- 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSS------CEEEEEETTCCHHHHHGGGCCT--T------S-CEECCSSTTHHH-----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHh--C------C-CeEEechhhCCh-----
Confidence 488999999999999987765443 6899999999999999999543 2 1 788888876411
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 228 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~ 228 (247)
....+.+..+.++++||||++.++++.|+.|+++++++. -.+..+|++||...+.
T Consensus 65 ---------~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------~~~~~iI~~tn~~~~~ 119 (143)
T 3co5_A 65 ---------DMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------RCRVRVIASCSYAAGS 119 (143)
T ss_dssp ---------HCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------TTTCEEEEEEEECTTT
T ss_pred ---------HhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------CCCEEEEEecCCCHHH
Confidence 112345666778999999999999999999999999853 1456799999987543
No 12
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.66 E-value=1.3e-15 Score=133.20 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc-------ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQN-------RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~-------~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~ 139 (247)
.....+.+.+.+.++|++.+++.+.+.+...... -..+..+..++|+||||||||++|+++++.+.. .+.
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~ 96 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR---LGY 96 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH---TTS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh---cCC
Confidence 3455677788878999999999998877643210 010223446899999999999999999999765 332
Q ss_pred --CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCccc
Q psy1694 140 --TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVY 208 (247)
Q Consensus 140 --~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~ 208 (247)
..+++.++++.+.....+. .. ..+.+.+..+.+++|||||++.+ +...++.|++.++++.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~g~---~~----~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-- 167 (309)
T 3syl_A 97 VRKGHLVSVTRDDLVGQYIGH---TA----PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR-- 167 (309)
T ss_dssp SSSCCEEEECGGGTCCSSTTC---HH----HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT--
T ss_pred cCCCcEEEEcHHHhhhhcccc---cH----HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC--
Confidence 4578888877764322222 11 22334455567789999999966 8899999999999865
Q ss_pred ccccCCceEEEEEeCCC
Q psy1694 209 NQISFQNTIFLFLSNSG 225 (247)
Q Consensus 209 ~~~~~~~~ifI~tSN~g 225 (247)
.+.++|+++|..
T Consensus 168 -----~~~~~i~~~~~~ 179 (309)
T 3syl_A 168 -----DDLVVILAGYAD 179 (309)
T ss_dssp -----TTCEEEEEECHH
T ss_pred -----CCEEEEEeCChH
Confidence 677899998865
No 13
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=6.9e-16 Score=139.33 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=96.0
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-----------C-----------CCCCeEEEEeecCCChHHHHH
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-----------H-----------NTKALAISLHGLPGTGKNYVT 124 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-----------~-----------~~kpl~lll~G~~GtGKt~~A 124 (247)
.+.+.+.+.|.+.++||+.+++.+..++..+..... + ...+..++|+||||||||++|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence 456789999999999999999999988842211000 0 112346899999999999999
Q ss_pred HHHHHHhhccccCCCCCcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHhCCCeEEEEeCCCCCChh-------
Q psy1694 125 DFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPKG------- 193 (247)
Q Consensus 125 ~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~~~~~vlilDEiek~~~~------- 193 (247)
+++|+.+. .+|+.++++.+.. .++++.. .+.+...+. +.+..+.++++||||+++++..
T Consensus 90 ~~la~~l~--------~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~ 159 (376)
T 1um8_A 90 QTLAKHLD--------IPIAISDATSLTE--AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT 159 (376)
T ss_dssp HHHHHHTT--------CCEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------
T ss_pred HHHHHHhC--------CCEEEecchhhhh--cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee
Confidence 99998852 3788888876531 2222210 111111111 1133456799999999999988
Q ss_pred -------hHHHHHhhcccCccc--c------------cccCCceEEEEEeCC
Q psy1694 194 -------LLDVIIPFIDHHAVY--N------------QISFQNTIFLFLSNS 224 (247)
Q Consensus 194 -------~~~~Ll~~Le~~~~~--~------------~~~~~~~ifI~tSN~ 224 (247)
+++.|+++|+++.+. . -++..|.+||+++|.
T Consensus 160 ~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~ 211 (376)
T 1um8_A 160 RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF 211 (376)
T ss_dssp ----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence 999999999976321 0 034567788888874
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.59 E-value=6.8e-16 Score=144.59 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=97.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+...+..+. ....|..++|+||||||||++|+++++.+ ..+|+.++|+.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--------~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMS 276 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--------SSEEEEEEHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--------CCCEEEEEchHhhh
Confidence 589999999999988875422211 01234578999999999999999998873 24899999987753
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
... +...+.+.+.+.. ......++|||||+|.+.+ .+++.|+++|+... ...+.++|++|
T Consensus 277 ~~~---g~~~~~~~~~f~~-A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaaT 347 (489)
T 3hu3_A 277 KLA---GESESNLRKAFEE-AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAAT 347 (489)
T ss_dssp SCT---THHHHHHHHHHHH-HHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEEE
T ss_pred hhc---chhHHHHHHHHHH-HHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEec
Confidence 322 2233333344433 2334458999999966543 68899999999632 22568899999
Q ss_pred CCChHHHHHHHHHHHHcCccccc
Q psy1694 223 NSGGTEIMNTFLELRKSGERYIT 245 (247)
Q Consensus 223 N~g~~~i~~~~~~~~~~g~~Re~ 245 (247)
|.... +. ....+.|++++.
T Consensus 348 n~~~~-Ld---~al~r~gRf~~~ 366 (489)
T 3hu3_A 348 NRPNS-ID---PALRRFGRFDRE 366 (489)
T ss_dssp SCGGG-BC---GGGGSTTSSCEE
T ss_pred CCccc-cC---HHHhCCCcCceE
Confidence 97532 22 122334677654
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.58 E-value=5.6e-15 Score=128.61 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT 140 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~ 140 (247)
.+.+++.+.+.+.++||+.+++.+..++........ ....|..++|+||||||||++|+++++.+.
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-------- 75 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-------- 75 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT--------
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC--------
Confidence 356788999999999999999999988876322110 012355789999999999999999999852
Q ss_pred CcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHh-CCCeEEEEeCCCCCChhh------------HHHHHhhcc
Q psy1694 141 SRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTA-CDRAIFIFDEVDKFPKGL------------LDVIIPFID 203 (247)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~-~~~~vlilDEiek~~~~~------------~~~Ll~~Le 203 (247)
.+++.++++.+.. .++++.- ...+..... +.+.. .+.+++||||+|++++.. ++.|+++|+
T Consensus 76 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 76 APFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp CCEEEEEGGGGSS--CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcchhccc--CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhc
Confidence 3788888877632 1222210 001111110 01112 135899999999998765 999999999
Q ss_pred cCcccc---cccCCceEEEEEeCC
Q psy1694 204 HHAVYN---QISFQNTIFLFLSNS 224 (247)
Q Consensus 204 ~~~~~~---~~~~~~~ifI~tSN~ 224 (247)
+..... ..+..+.+||+++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~ 177 (310)
T 1ofh_A 154 GSTVSTKHGMVKTDHILFIASGAF 177 (310)
T ss_dssp CCEEEETTEEEECTTCEEEEEECC
T ss_pred CCeEecccccccCCcEEEEEcCCc
Confidence 864321 124457888988753
No 16
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.57 E-value=2.3e-14 Score=125.63 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=76.7
Q ss_pred HHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHH-
Q psy1694 94 LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS- 172 (247)
Q Consensus 94 l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~- 172 (247)
++.++..+. .+.|..++|+||||||||++|+++|+.+- .+|+.++++.+.....+. ....+...+..
T Consensus 24 ~k~~l~~~~-~~~p~~lLl~GppGtGKT~la~aiA~~l~--------~~~i~v~~~~l~~~~~g~---~~~~i~~~f~~a 91 (293)
T 3t15_A 24 TKNFLKLPN-IKVPLILGIWGGKGQGKSFQCELVFRKMG--------INPIMMSAGELESGNAGE---PAKLIRQRYREA 91 (293)
T ss_dssp HHTTSCCTT-CCCCSEEEEEECTTSCHHHHHHHHHHHHT--------CCCEEEEHHHHHCC---H---HHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeHHHhhhccCch---hHHHHHHHHHHH
Confidence 344444343 56778899999999999999999999863 389999988764332221 12222222211
Q ss_pred --HHHhCCCeEEEEeCCCCCCh-------------hhHHHHHhhcccCccc------ccccCCceEEEEEeCCCh
Q psy1694 173 --NVTACDRAIFIFDEVDKFPK-------------GLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 173 --~l~~~~~~vlilDEiek~~~-------------~~~~~Ll~~Le~~~~~------~~~~~~~~ifI~tSN~g~ 226 (247)
..+....+||||||+|++.+ .+++.|+.+|+..... ...+..+.++|+|||...
T Consensus 92 ~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 92 AEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp HHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred HHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 12344679999999998865 3669999999854321 122557899999999753
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.56 E-value=3.8e-14 Score=125.56 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=91.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+...+........ .+..++|+||||||||++|+.+++.+. .+|+.++++.+. .
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~ia~~~~--------~~~~~~~~~~~~-----~ 93 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNE---CLDHILFSGPAGLGKTTLANIISYEMS--------ANIKTTAAPMIE-----K 93 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTS---CCCCEEEECSTTSSHHHHHHHHHHHTT--------CCEEEEEGGGCC-----S
T ss_pred HhCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEecchhcc-----c
Confidence 499999999999988876543222 233589999999999999999988742 378888886652 1
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-----------ccccCCceEEEEEeCCCh
Q psy1694 159 VSLYRLQLTNWIISNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-----------NQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~-~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-----------~~~~~~~~ifI~tSN~g~ 226 (247)
.+ .+.+.+. .+.++++||||++.+++..++.|+++|+++... ...+..+.++|++||...
T Consensus 94 ~~--------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~ 165 (338)
T 3pfi_A 94 SG--------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG 165 (338)
T ss_dssp HH--------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG
T ss_pred hh--------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc
Confidence 12 1222232 356799999999999999999999999987632 123444688999999743
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-13 Score=122.77 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=95.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+.+++.+.+.+.--+..+. ....|..+||+||||||||++|+++|..+. .+|+.+..+++..
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~s 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--------CKFIRVSGAELVQ 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--------CEEEEEEGGGGSC
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--------CCceEEEhHHhhc
Confidence 488999999999988864222211 123456899999999999999999999853 3899999888743
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
. +++.-...+...+ ........+++||||+|.+.+ . ....|+..||.-. ...+.++|
T Consensus 221 k---~vGese~~vr~lF-~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~V~vI 291 (405)
T 4b4t_J 221 K---YIGEGSRMVRELF-VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----TSKNIKII 291 (405)
T ss_dssp S---STTHHHHHHHHHH-HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----CCCCEEEE
T ss_pred c---ccchHHHHHHHHH-HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----CCCCeEEE
Confidence 3 3333333334333 333445569999999998843 1 3455566665421 23577899
Q ss_pred EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
+|||.... |.. .+++.||+..
T Consensus 292 aATNrpd~-LDp---AllRpGRfD~ 312 (405)
T 4b4t_J 292 MATNRLDI-LDP---ALLRPGRIDR 312 (405)
T ss_dssp EEESCSSS-SCH---HHHSTTSSCC
T ss_pred eccCChhh-CCH---hHcCCCcCce
Confidence 99998533 322 3345666643
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.48 E-value=2.9e-13 Score=118.82 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=87.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+...+........ .+..++|+||||||||++|+.+++.+. .+++.++++.+..
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~i~~~~~--------~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELG--------VNLRVTSGPAIEK----- 76 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCS---CCCCCEEECCTTCCCHHHHHHHHHHHT--------CCEEEECTTTCCS-----
T ss_pred HhhCHHHHHHHHHHHHHHHHccCC---CCCcEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeccccCC-----
Confidence 489999999999888876543221 233579999999999999999988742 3677777655411
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c---------ccCCceEEEEEeCCC
Q psy1694 159 VSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q---------ISFQNTIFLFLSNSG 225 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~---------~~~~~~ifI~tSN~g 225 (247)
. ..+.+.+.. ..++++||||++.+++..++.|+++++++.... + .+..+.++|++||..
T Consensus 77 ~--------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 77 P--------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp H--------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred h--------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence 1 122233444 567999999999999999999999999864210 0 122357788888854
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.48 E-value=1.3e-13 Score=130.74 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~ 148 (247)
....++.|.+.++|++.+...+.+.+.-...... .++..++|+||||||||++|+++|..+.. +++.+++
T Consensus 72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~--------~~~~i~~ 141 (543)
T 3m6a_A 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGR--------KFVRISL 141 (543)
T ss_dssp TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTC--------EEEEECC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCC--------CeEEEEe
Confidence 3445566778899999999888766543222221 13447899999999999999999998633 6777776
Q ss_pred ccccCCC--CChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhcccCccc--------cccc
Q psy1694 149 SRIHFPN--ENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHAVY--------NQIS 212 (247)
Q Consensus 149 ~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~~~~~--------~~~~ 212 (247)
+...... .+....|.+...+.+...+..+ ..+++||||+++++++ .++.|+++|++.+.. ..++
T Consensus 142 ~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 142 GGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp CC--------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred cccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 5432111 0111123333333343444554 5589999999999987 569999999875422 1236
Q ss_pred CCceEEEEEeCCCh
Q psy1694 213 FQNTIFLFLSNSGG 226 (247)
Q Consensus 213 ~~~~ifI~tSN~g~ 226 (247)
..+++||+|||...
T Consensus 222 ~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 222 LSKVLFIATANNLA 235 (543)
T ss_dssp CSSCEEEEECSSTT
T ss_pred ccceEEEeccCccc
Confidence 68899999999754
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.47 E-value=5.1e-13 Score=118.26 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=89.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+.+......+. ....|..++|+||||||||++|+++|+.+. .+|+.++++++...
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK 90 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--------CEEEEEEHHHHHTT
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--------CCEEEEchHHHhhc
Confidence 499999999999988864332221 012345799999999999999999998853 37899988776433
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
. ++.....+...+ ........++|||||+|.+.+ .+++.++..++... ....+.++|++||
T Consensus 91 ~---~g~~~~~~~~~f-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vi~atn 162 (322)
T 3eie_A 91 W---MGESEKLVKQLF-AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGATN 162 (322)
T ss_dssp T---GGGHHHHHHHHH-HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCEEEEEEES
T ss_pred c---cchHHHHHHHHH-HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCceEEEEecC
Confidence 2 222233233333 334455668999999999865 34677777776421 1225678888998
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 163 ~~ 164 (322)
T 3eie_A 163 IP 164 (322)
T ss_dssp CG
T ss_pred Ch
Confidence 74
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=3.8e-13 Score=116.27 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=88.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+......+. ....|..++|+||||||||++|+++|+.+. .+++.++++.+..
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--------~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--------ATFIRVVGSELVK 89 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--------CEEEEEEGGGGCC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEehHHHHH
Confidence 489999999999888765432211 012445789999999999999999998843 3788888877654
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
...+. ....+...+ ........++|||||++.+ +...+..+..+++..... ....+.++|+||
T Consensus 90 ~~~~~---~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~~~vI~tt 163 (285)
T 3h4m_A 90 KFIGE---GASLVKDIF-KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF--DARGDVKIIGAT 163 (285)
T ss_dssp CSTTH---HHHHHHHHH-HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT--CSSSSEEEEEEC
T ss_pred hccch---HHHHHHHHH-HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC--CCCCCEEEEEeC
Confidence 43332 222223333 3344556689999999987 456677777776642100 012467889998
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 164 n~~ 166 (285)
T 3h4m_A 164 NRP 166 (285)
T ss_dssp SCG
T ss_pred CCc
Confidence 865
No 23
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.47 E-value=1.1e-13 Score=119.24 Aligned_cols=135 Identities=9% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHhhcCChHHHHHHHHHH---HHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694 75 QLKQHVHGQELAISHICGA---LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 151 (247)
Q Consensus 75 ~L~~~l~Gq~~a~~~l~~~---l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l 151 (247)
.+...++|++.+++.+... +...+.... ...+..++|+||||||||++|+++|+.+. .+|+.++++..
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~--------~~~~~i~~~~~ 100 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESN--------FPFIKICSPDK 100 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHT--------CSEEEEECGGG
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEeCHHH
Confidence 3444689999998888775 333333222 23455799999999999999999998842 37888887653
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC----------ChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
..... .......+...+ ........++|||||+|.+ ...+++.|...++... ..-.+.++|+|
T Consensus 101 ~~g~~--~~~~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----~~~~~~~ii~t 173 (272)
T 1d2n_A 101 MIGFS--ETAKCQAMKKIF-DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----PQGRKLLIIGT 173 (272)
T ss_dssp CTTCC--HHHHHHHHHHHH-HHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----STTCEEEEEEE
T ss_pred hcCCc--hHHHHHHHHHHH-HHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----CCCCCEEEEEe
Confidence 22221 111112222223 2223456799999999887 3455666666665421 11246678888
Q ss_pred eCCC
Q psy1694 222 SNSG 225 (247)
Q Consensus 222 SN~g 225 (247)
||..
T Consensus 174 tn~~ 177 (272)
T 1d2n_A 174 TSRK 177 (272)
T ss_dssp ESCH
T ss_pred cCCh
Confidence 8874
No 24
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.4e-12 Score=120.19 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=88.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.|.|.+.+++.+.+.+.-.+..+. ...-|..+||+||||||||++|+++|..+. .+|+.++++++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--------~~~~~v~~s~l~s 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--------ANFIFSPASGIVD 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGTCC
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEehhhhcc
Confidence 488999999999988865333221 123456899999999999999999999853 3899998887744
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
... +.-...+...+ ........+||||||+|.+.. .....||..|+... ...+.++|
T Consensus 254 k~~---Gese~~ir~~F-~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~vivI 324 (437)
T 4b4t_L 254 KYI---GESARIIREMF-AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----NLGQTKII 324 (437)
T ss_dssp SSS---SHHHHHHHHHH-HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----CTTSSEEE
T ss_pred ccc---hHHHHHHHHHH-HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----CCCCeEEE
Confidence 332 32222233333 333455679999999998732 13455666666422 23567999
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
+|||..
T Consensus 325 ~ATNrp 330 (437)
T 4b4t_L 325 MATNRP 330 (437)
T ss_dssp EEESST
T ss_pred EecCCc
Confidence 999974
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=111.34 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=78.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+.. ...+. ....|..++|+||||||||++|+++|+.+. .+++.++++.+..
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--------~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--------VPFLAMAGAEFVE 77 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CCEEEEETTTTSS
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEechHHHHh
Confidence 489999999988777654 22221 013455789999999999999999999853 3788888877643
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC------------hhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLFL 221 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~------------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t 221 (247)
...+. ....+...+ ........++|||||+|.+. ...+..+..++++-. ......+.++|+|
T Consensus 78 ~~~~~---~~~~~~~~~-~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~~~vi~~ 151 (262)
T 2qz4_A 78 VIGGL---GAARVRSLF-KEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD--GMGTTDHVIVLAS 151 (262)
T ss_dssp SSTTH---HHHHHHHHH-HHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH--TCCTTCCEEEEEE
T ss_pred hccCh---hHHHHHHHH-HHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh--CcCCCCCEEEEec
Confidence 22221 222223333 22334456899999999983 333344444443210 0011257789999
Q ss_pred eCCCh
Q psy1694 222 SNSGG 226 (247)
Q Consensus 222 SN~g~ 226 (247)
||...
T Consensus 152 tn~~~ 156 (262)
T 2qz4_A 152 TNRAD 156 (262)
T ss_dssp ESCGG
T ss_pred CCChh
Confidence 98753
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.44 E-value=1.3e-12 Score=113.61 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=87.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+.+......+. -...+..++|+||||||||++|+++++.+. .+|+.++++.+...
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--------~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--------ATFLNISAASLTSK 93 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--------CEEEEEESTTTSSS
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEeeHHHHhhc
Confidence 489999999999888765322111 011345789999999999999999988742 37888988877554
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..+... .... .+.........+++||||++.+. ...++.++..++..... ....+.++|++||
T Consensus 94 ~~~~~~---~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~v~vi~~tn 167 (297)
T 3b9p_A 94 YVGDGE---KLVR-ALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--PDGDRIVVLAATN 167 (297)
T ss_dssp SCSCHH---HHHH-HHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------CEEEEEEES
T ss_pred ccchHH---HHHH-HHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--CCCCcEEEEeecC
Confidence 443322 1122 22234445667999999998884 34566778777764311 1124578899998
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 168 ~~ 169 (297)
T 3b9p_A 168 RP 169 (297)
T ss_dssp CG
T ss_pred Ch
Confidence 75
No 27
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=8.8e-13 Score=108.09 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=85.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+.+.+... ++..++|+||+|||||++|+.+++.+.. .+...+++.++++... .
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~---~~~~~~~~~~~~~~~~-----~ 81 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDER-----G 81 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHG---GGGGGGEEEEETTCTT-----C
T ss_pred HHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhc---cccccceEEecccccc-----C
Confidence 4899999988887776532 1113799999999999999999998765 4444567777664321 1
Q ss_pred HHHHHHHHHHHHHHHHH-----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 159 VSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~-----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
.... ...+..... .....+++|||++.+++..++.|++++++.. .++.+|++||..
T Consensus 82 ~~~~----~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~~~~~ 142 (226)
T 2chg_A 82 IDVV----RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYV 142 (226)
T ss_dssp HHHH----HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred hHHH----HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-------CCCeEEEEeCCh
Confidence 1111 222222222 2456899999999999999999999999854 567888888865
No 28
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.7e-12 Score=119.07 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=87.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.|-|.+.+++.|.+.+.-.+..+. ...-|..+||+||||||||++|+++|..+. .+|+.++.+++..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--------~~fi~v~~s~l~s 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--------ATFLRIVGSELIQ 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--------CEEEEEESGGGCC
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--------CCEEEEEHHHhhh
Confidence 488999999999998875333221 123456899999999999999999999853 3899998888754
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hh---HHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GL---LDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~---~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
.. ++.....+...+ ........+|+||||+|.+.. .. ...|+..++... ...+.++|
T Consensus 255 k~---vGesek~ir~lF-~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----~~~~ViVI 325 (437)
T 4b4t_I 255 KY---LGDGPRLCRQIF-KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----DRGDVKVI 325 (437)
T ss_dssp SS---SSHHHHHHHHHH-HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----CSSSEEEE
T ss_pred cc---CchHHHHHHHHH-HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----CCCCEEEE
Confidence 33 332333333333 233445569999999998732 22 334444444311 23578999
Q ss_pred EEeCCCh
Q psy1694 220 FLSNSGG 226 (247)
Q Consensus 220 ~tSN~g~ 226 (247)
+|||...
T Consensus 326 aATNrpd 332 (437)
T 4b4t_I 326 MATNKIE 332 (437)
T ss_dssp EEESCST
T ss_pred EeCCChh
Confidence 9999743
No 29
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1e-12 Score=120.92 Aligned_cols=145 Identities=18% Similarity=0.178 Sum_probs=95.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+.+++.+.+.+...+..+. ....|..+||+||||||||++|+++|..+. .+|+.++++++..
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--------~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--------AAFIRVNGSEFVH 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--------CEEEEEEGGGTCC
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCeEEEecchhhc
Confidence 489999999999988875433221 123466899999999999999999999853 3899999888754
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
... +.-...+...+. .......+++||||+|.+.. .+.+.|+..|+.-. ...+.++|
T Consensus 245 ~~~---Ge~e~~ir~lF~-~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----~~~~v~vI 315 (428)
T 4b4t_K 245 KYL---GEGPRMVRDVFR-LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----QSTNVKVI 315 (428)
T ss_dssp SSC---SHHHHHHHHHHH-HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----SSCSEEEE
T ss_pred ccc---chhHHHHHHHHH-HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----CCCCEEEE
Confidence 333 323333333332 33445569999999975421 24566666666421 23578999
Q ss_pred EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
+|||.... |.. .+++.||+..
T Consensus 316 ~aTN~~~~-LD~---AllRpGRfd~ 336 (428)
T 4b4t_K 316 MATNRADT-LDP---ALLRPGRLDR 336 (428)
T ss_dssp EEESCSSS-CCH---HHHSSSSEEE
T ss_pred EecCChhh-cCh---hhhcCCcceE
Confidence 99997532 332 2345666643
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.6e-12 Score=114.02 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=87.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.+.|++.+++.+.+.+...+..+. ....|..++|+||||||||++|+++|+.+.. .+|+.++++++...
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVSK 85 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-------CEEEEEECCSSCCS
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-------CcEEEEEhHHHHhh
Confidence 489999999999988864333221 0123457999999999999999999988522 47888888776543
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..+.. ...+...+ ........++|||||+|.+.+ .+++.++..++.-. .+..+.++|++||
T Consensus 86 ~~g~~---~~~~~~lf-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~v~vI~atn 157 (322)
T 1xwi_A 86 WLGES---EKLVKNLF-QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGATN 157 (322)
T ss_dssp SCCSC---HHHHHHHH-HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----SCCTTEEEEEEES
T ss_pred hhhHH---HHHHHHHH-HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----ccCCCEEEEEecC
Confidence 32221 11222222 334456678999999998832 34566676666421 1235788999998
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 158 ~~ 159 (322)
T 1xwi_A 158 IP 159 (322)
T ss_dssp CT
T ss_pred Cc
Confidence 76
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.42 E-value=6.6e-13 Score=120.47 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=85.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+.+......+. -...+..++|+||||||||++|+++|+.+. .+|+.++++.+...
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--------~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--------ATFFNISAASLTSK 187 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--------CEEEEECSCCC---
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--------CcEEEeeHHHhhcc
Confidence 489999999999988864332111 011245789999999999999999988742 48999998877543
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..+. ....+...+ ........++|||||+|.+ ...+++.|+..++.... ..-.+.++|++||
T Consensus 188 ~~g~---~~~~~~~~~-~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~v~vI~atn 260 (389)
T 3vfd_A 188 YVGE---GEKLVRALF-AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS---AGDDRVLVMGATN 260 (389)
T ss_dssp -------CHHHHHHHH-HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------CEEEEEEES
T ss_pred ccch---HHHHHHHHH-HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc---cCCCCEEEEEecC
Confidence 2221 222222222 3344556689999999888 44567788888774211 1124678999998
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 261 ~~ 262 (389)
T 3vfd_A 261 RP 262 (389)
T ss_dssp CG
T ss_pred Cc
Confidence 73
No 32
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2e-12 Score=119.45 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=94.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.|.|.+.+++.|.+.+.-.+..+. .-..|..+||+||||||||++|+++|..+. .+|+.+.++++..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--------~~fi~vs~s~L~s 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--------ATFIRVIGSELVQ 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGGCC
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------CCeEEEEhHHhhc
Confidence 488999999999888754322211 023566899999999999999999999853 3899999888754
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
.. ++.....+...+ ........+++||||+|.+.. . .+..++..|+... ...+.++|
T Consensus 282 k~---vGesek~ir~lF-~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~ViVI 352 (467)
T 4b4t_H 282 KY---VGEGARMVRELF-EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----PRGNIKVM 352 (467)
T ss_dssp CS---SSHHHHHHHHHH-HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----CTTTEEEE
T ss_pred cc---CCHHHHHHHHHH-HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----CCCcEEEE
Confidence 33 332333333333 233445569999999998742 1 2344455554321 23578899
Q ss_pred EEeCCChHHHHHHHHHHHHcCccccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYIT 245 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re~ 245 (247)
+|||.... |.. .+++.||+...
T Consensus 353 aATNrpd~-LDp---ALlRpGRFD~~ 374 (467)
T 4b4t_H 353 FATNRPNT-LDP---ALLRPGRIDRK 374 (467)
T ss_dssp EECSCTTS-BCH---HHHSTTTCCEE
T ss_pred eCCCCccc-CCh---hhhccccccEE
Confidence 99997432 332 23556766543
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=117.44 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=88.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+.+...+..+. ....|..++|+||||||||++|+++|+.+. .+|+.++++.+...
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--------ATFFSISASSLTSK 156 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--------CEEEEEEGGGGCCS
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--------CeEEEEehHHhhcc
Confidence 489999999999988865332211 012455799999999999999999988742 47899998887543
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..+. ....+...+ ........++|||||+|.+.. .+++.++..++.... ....+.++|++||
T Consensus 157 ~~g~---~~~~~~~~~-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~~v~vI~atn 229 (357)
T 3d8b_A 157 WVGE---GEKMVRALF-AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---SSEDRILVVGATN 229 (357)
T ss_dssp STTH---HHHHHHHHH-HHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------CCCCEEEEEEES
T ss_pred ccch---HHHHHHHHH-HHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---cCCCCEEEEEecC
Confidence 3222 222222222 334456679999999988743 456778888775321 1124678899998
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 230 ~~ 231 (357)
T 3d8b_A 230 RP 231 (357)
T ss_dssp CG
T ss_pred Ch
Confidence 74
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.41 E-value=3.7e-12 Score=113.80 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=74.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+............ .+..++|+||||||||++|+++++.+.. ..+|+.+++..+.......
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~~------~~~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKI---AGRAVLIAGQPGTGKTAIAMGMAQALGP------DTPFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEEESTTSSHHHHHHHHHHHHCS------SCCEEEEEGGGGSCSSSCH
T ss_pred hccChHHHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCCHHHHHHHHHHHhcc------cCCcccccchhhhhcccch
Confidence 489999998876554443322221 2347899999999999999999998643 3466666654422111100
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHhCC----CeEEEE
Q psy1694 159 --------------------------------------------------VSLYRLQLTNWIISNVTACD----RAIFIF 184 (247)
Q Consensus 159 --------------------------------------------------v~~~~~~l~~~~~~~l~~~~----~~vlil 184 (247)
....+..+............ .+++||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 11111111111111111111 269999
Q ss_pred eCCCCCChhhHHHHHhhcccCc
Q psy1694 185 DEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 185 DEiek~~~~~~~~Ll~~Le~~~ 206 (247)
||++.+++..++.|++.+++..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~ 217 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDM 217 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTT
T ss_pred hhccccChHHHHHHHHHhhCcC
Confidence 9999999999999999998864
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=1.7e-12 Score=103.97 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=82.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.. ..+..++|+||+|||||++|+.+++.+.. .. ...+++.+++..+..
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN---GEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHH---TCSCGGGTTCEEEEECHHHHHT
T ss_pred ccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHh---CCCchhhcCCcEEEeeHHHHhc
Confidence 589999988888776643 12336799999999999999999998754 11 123556666655432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
... ..+.+...+...+..........+++|||++.+. ..+++.|.+++++ .+..+|+++|..
T Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~~i~~~~~~ 161 (195)
T 1jbk_A 92 GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------GELHCVGATTLD 161 (195)
T ss_dssp TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------TSCCEEEEECHH
T ss_pred cCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------CCeEEEEeCCHH
Confidence 222 2232333333333322233445799999999995 4568888888876 355788888754
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.41 E-value=1e-12 Score=115.84 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+.+.+.. ...|..+++.||||||||++|+++++.+.. +++.++++.. +
T Consensus 27 ~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~--------~~~~i~~~~~-----~- 85 (324)
T 3u61_B 27 ECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNA--------DMMFVNGSDC-----K- 85 (324)
T ss_dssp TSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE--------EEEEEETTTC-----C-
T ss_pred HHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC--------CEEEEccccc-----C-
Confidence 489999998888777762 123446888999999999999999988533 6777776542 1
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 159 VSLYRLQLTNWIISNVTAC----DRAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~----~~~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
+. .+.+.+.+..... ..+++||||++.++ .+.++.|++++++.. .++.||+|||...
T Consensus 86 ~~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-------~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ID----FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-------SNCSIIITANNID 147 (324)
T ss_dssp HH----HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-------GGCEEEEEESSGG
T ss_pred HH----HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence 22 1222232222222 45899999999999 999999999999854 5678999998754
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.4e-12 Score=120.10 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=86.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.|.|.+.+++.+.+.+...+..+. ....|..+||+||||||||++|+++|..+. .+|+.+..+++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--------ATFLKLAAPQLVQ 253 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGGCS
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--------CCEEEEehhhhhh
Confidence 489999999999988765443221 023466899999999999999999999853 3899999888754
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
...+. -...+...+ ........+++||||+|.+.. . ....|+..|+... ...+.++|
T Consensus 254 ~~vGe---se~~ir~lF-~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~ViVI 324 (434)
T 4b4t_M 254 MYIGE---GAKLVRDAF-ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----SDDRVKVL 324 (434)
T ss_dssp SCSSH---HHHHHHHHH-HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----SSCSSEEE
T ss_pred cccch---HHHHHHHHH-HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----CCCCEEEE
Confidence 33332 222333333 223344558999999976521 1 2445666665422 12467899
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
+|||..
T Consensus 325 aaTNrp 330 (434)
T 4b4t_M 325 AATNRV 330 (434)
T ss_dssp EECSSC
T ss_pred EeCCCc
Confidence 999974
No 38
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.3e-12 Score=114.30 Aligned_cols=125 Identities=16% Similarity=0.257 Sum_probs=84.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+.+.+... . .| .++|+||+|+|||++|+.+++.+.+ .+...+++.++++...+
T Consensus 26 ~~~g~~~~~~~l~~~l~~~----~---~~-~~ll~G~~G~GKT~la~~l~~~l~~---~~~~~~~~~~~~~~~~~----- 89 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNASDERG----- 89 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEETTCHHH-----
T ss_pred HhhCCHHHHHHHHHHHHcC----C---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCceEEeeccccCc-----
Confidence 4899999998888776542 1 12 4899999999999999999999765 33223456665543210
Q ss_pred HHHHHHHHHHHHHH-HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 159 VSLYRLQLTNWIIS-NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 159 v~~~~~~l~~~~~~-~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
.......+...... .+....+.++++||++.+++..++.|++++++.. .++.||+++|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 90 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSS 151 (327)
T ss_dssp HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCCcc
Confidence 11111111111100 0112457899999999999999999999999865 5778999988653
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.40 E-value=1.6e-12 Score=116.88 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=86.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+++...+..+. ....+..++|+||||||||++|+++|+.+. .+|+.++++++...
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK 123 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--------CEEEEEEHHHHHSC
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--------CCEEEeeHHHHhhh
Confidence 489999999999988764322221 012334689999999999999999999853 37888888766432
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh-----------hHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~-----------~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.. +.....+.. +.........+||||||+|.+++. +++.|+..|+... ....++++|++||
T Consensus 124 ~~---g~~~~~~~~-~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vI~atn 195 (355)
T 2qp9_X 124 WM---GESEKLVKQ-LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGATN 195 (355)
T ss_dssp C------CHHHHHH-HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------CCEEEEEEES
T ss_pred hc---chHHHHHHH-HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCCCeEEEeecC
Confidence 22 211122222 223334456799999999998743 5777887777421 1125688999999
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 196 ~~ 197 (355)
T 2qp9_X 196 IP 197 (355)
T ss_dssp CG
T ss_pred Cc
Confidence 75
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.39 E-value=1.1e-12 Score=114.30 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=85.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+.+.+.. .. .| .++|+||+|||||++|+.+++.+.+ .+...+++.++++...+...
T Consensus 18 ~~~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-- 84 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER----KN---IP-HLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDERGIDV-- 84 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT----TC---CC-CEEEESSSSSSHHHHHHHHHHHHHT---TCHHHHCEEEETTSTTCTTT--
T ss_pred HHhCCHHHHHHHHHHHhC----CC---CC-eEEEECcCCcCHHHHHHHHHHHhcC---CcccCCeEEEeCccccChHH--
Confidence 489999988877665542 11 22 3899999999999999999999866 44345677777765322111
Q ss_pred HHHHHHHHHHHHHH-HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 159 VSLYRLQLTNWIIS-NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 159 v~~~~~~l~~~~~~-~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
+. ..+...... .+...++.++|+||++.++++.++.|++++++.. .+++||+++|...
T Consensus 85 ~~---~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~ 143 (319)
T 2chq_A 85 VR---HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS 143 (319)
T ss_dssp SS---HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-------SSEEEEEEESCGG
T ss_pred HH---HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence 11 111111100 0112456999999999999999999999999854 6788999988643
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.38 E-value=1.5e-12 Score=104.25 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=81.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.. . .+..++|+||+|||||++|+.+++.+.. .. ...+++.+++..+..
T Consensus 23 ~~~g~~~~~~~l~~~l~~----~----~~~~vll~G~~G~GKT~la~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR----R----TKNNPILLGDPGVGKTAIVEGLAIKIVQ---GDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS----S----SSCEEEEESCGGGCHHHHHHHHHHHHHT---TCSCTTTTTCEEEEECHHHHHH
T ss_pred hhhcchHHHHHHHHHHhC----C----CCCceEEECCCCCCHHHHHHHHHHHHHh---cCCcchhcCCeEEEEeHHHhhc
Confidence 589999988888776643 1 2236799999999999999999998643 11 123455555443321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC---------hhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~---------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
.. ...+.....+...+ ..+..+ ...++||||++.++ ..+++.|++.+++ .+.++|+++|
T Consensus 92 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------~~~~ii~~~~ 160 (187)
T 2p65_A 92 GA-KYRGDFEERLKSIL-KEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------GELRCIGATT 160 (187)
T ss_dssp HC-CSHHHHHHHHHHHH-HHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------TCSCEEEEEC
T ss_pred CC-CchhHHHHHHHHHH-HHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------CCeeEEEecC
Confidence 11 11222333333333 333444 45799999999997 5678888888876 4567888888
Q ss_pred CCh
Q psy1694 224 SGG 226 (247)
Q Consensus 224 ~g~ 226 (247)
...
T Consensus 161 ~~~ 163 (187)
T 2p65_A 161 VSE 163 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.38 E-value=6.2e-13 Score=116.71 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=84.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+...+..+. ....|..++|+||||||||++|+++|+.+. .+|+.++++.+..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--------~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLT 87 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--------CEEEEECHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--------CCEEEEEhHHHHh
Confidence 389999999999988864322110 012345789999999999999999998742 4788888765421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh--------------hHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG--------------LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~--------------~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
. .++.....+...+ ........+++||||+|.+.+. +++.|+..|+.-. ...+.++|
T Consensus 88 ~---~~g~~~~~~~~~f-~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----~~~~v~vi 158 (301)
T 3cf0_A 88 M---WFGESEANVREIF-DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII 158 (301)
T ss_dssp H---HHTTCTTHHHHHH-HHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----TTSSEEEE
T ss_pred h---hcCchHHHHHHHH-HHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----CCCCEEEE
Confidence 0 0000001112222 2223445689999999976542 4788888887521 22578899
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
++||..
T Consensus 159 ~atn~~ 164 (301)
T 3cf0_A 159 GATNRP 164 (301)
T ss_dssp EEESCG
T ss_pred EecCCc
Confidence 999975
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.36 E-value=3.7e-12 Score=117.83 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=83.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+.+...+..+.- ...|..++|+||||||||++|+++|+.+.. .+|+.++++.+...
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-------~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVSK 207 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-------SEEEEECCC-----
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------CCEEEEeHHHHHhh
Confidence 4889999999998887533222110 123457899999999999999999988522 47888887765322
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
..+. ....+.. +.........+||||||+|.+.+ .+++.|+..++... .+..+++||++||
T Consensus 208 ~~g~---~~~~~~~-~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----~~~~~v~vI~atn 279 (444)
T 2zan_A 208 WLGE---SEKLVKN-LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGATN 279 (444)
T ss_dssp -------CCCTHHH-HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----CCCSSCEEEEEES
T ss_pred hcch---HHHHHHH-HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----cCCCCEEEEecCC
Confidence 1111 0001111 22333455679999999999843 35677777776521 1235788999999
Q ss_pred CC
Q psy1694 224 SG 225 (247)
Q Consensus 224 ~g 225 (247)
..
T Consensus 280 ~~ 281 (444)
T 2zan_A 280 IP 281 (444)
T ss_dssp CG
T ss_pred Cc
Confidence 75
No 44
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=1.6e-12 Score=121.92 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
...+.+...+...++||+.+++.+..++.. .. .++|+||||||||++|+++|+.+.. ..+|...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~----~~------~VLL~GpPGtGKT~LAraLa~~l~~------~~~f~~~ 74 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALS----GE------SVFLLGPPGIAKSLIARRLKFAFQN------ARAFEYL 74 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHH----TC------EEEEECCSSSSHHHHHHHGGGGBSS------CCEEEEE
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----CC------eeEeecCchHHHHHHHHHHHHHHhh------hhHHHHH
Confidence 345678888999999999999877665542 22 5799999999999999999886421 2355555
Q ss_pred ecc-----cccCCCCChHHHHHHHHHHHHHHHHHhC------CCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c--cc
Q psy1694 147 FNS-----RIHFPNENHVSLYRLQLTNWIISNVTAC------DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--IS 212 (247)
Q Consensus 147 ~~~-----~l~~~~~~~v~~~~~~l~~~~~~~l~~~------~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~--~~ 212 (247)
++. ++++..... . ..-.+.+... ..+++|||||+++++..++.|+++|+++.+.. + ..
T Consensus 75 ~~~~~t~~dL~G~~~~~-----~---~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 75 MTRFSTPEEVFGPLSIQ-----A---LKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp CCTTCCHHHHHCCBC------------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEE
T ss_pred HHhcCCHHHhcCcccHH-----H---HhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCC
Confidence 542 222211100 0 0001222222 23589999999999999999999999986542 2 23
Q ss_pred CCceEEEEEeCCChH
Q psy1694 213 FQNTIFLFLSNSGGT 227 (247)
Q Consensus 213 ~~~~ifI~tSN~g~~ 227 (247)
....++|++||.-++
T Consensus 147 ~~~~~iI~ATN~lpe 161 (500)
T 3nbx_X 147 IPMRLLVAASNELPE 161 (500)
T ss_dssp CCCCEEEEEESSCCC
T ss_pred cchhhhhhccccCCC
Confidence 333356888885433
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.36 E-value=2.9e-12 Score=118.71 Aligned_cols=105 Identities=24% Similarity=0.308 Sum_probs=68.7
Q ss_pred hcCChHHHH---HHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694 79 HVHGQELAI---SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 155 (247)
Q Consensus 79 ~l~Gq~~a~---~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~ 155 (247)
.++||+.++ ..+...+... ++..++|+||||||||++|++|++.+. .+|+.+++...
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~--------~~f~~l~a~~~---- 86 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYAN--------ADVERISAVTS---- 86 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTT--------CEEEEEETTTC----
T ss_pred HhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhC--------CCeEEEEeccC----
Confidence 499999998 6676666542 122689999999999999999998842 36777765331
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694 156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206 (247)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~ 206 (247)
.+...++.+.. .........++++||||++.++...|+.|++.++++.
T Consensus 87 --~~~~ir~~~~~-a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~ 134 (447)
T 3pvs_A 87 --GVKEIREAIER-ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 (447)
T ss_dssp --CHHHHHHHHHH-HHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS
T ss_pred --CHHHHHHHHHH-HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc
Confidence 12222222222 2222334667999999999999999999999999854
No 46
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.34 E-value=1.7e-11 Score=113.59 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=40.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++||+.+++.+...+........ .|..++|+||||||||++|+++|+.+.
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~---~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKM---AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHHHHhCCC---CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 589999999988776654433222 345789999999999999999999864
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.33 E-value=1e-11 Score=114.71 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=56.3
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-----C-CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC
Q psy1694 68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-----H-NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 141 (247)
Q Consensus 68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-----~-~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~ 141 (247)
..+.+.+.|++.|+||+.+++.+..++...+.... . ...|..++|+||||||||++|+++|+.+..
T Consensus 5 tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------- 76 (444)
T 1g41_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------- 76 (444)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC--------
Confidence 45778899999999999999999888865321110 0 113457999999999999999999998532
Q ss_pred cceeeecccc
Q psy1694 142 RFVHKFNSRI 151 (247)
Q Consensus 142 ~~v~~~~~~l 151 (247)
+|+.++++.+
T Consensus 77 ~~~~v~~~~~ 86 (444)
T 1g41_A 77 PFIKVEATKF 86 (444)
T ss_dssp CEEEEEGGGG
T ss_pred Cceeecchhh
Confidence 5666655443
No 48
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=5.1e-12 Score=110.29 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=83.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+.+.+.. .. .| .++|+||+|+|||++|+.+++.+.+ .+...+++.++++.. ..
T Consensus 22 ~~~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~-----~~ 85 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKD----GN---MP-HMIISGMPGIGKTTSVHCLAHELLG---RSYADGVLELNASDD-----RG 85 (323)
T ss_dssp GCCSCTHHHHHHHHHHHS----CC---CC-CEEEECSTTSSHHHHHHHHHHHHHG---GGHHHHEEEECTTSC-----CS
T ss_pred HHHCCHHHHHHHHHHHHc----CC---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCCEEEecCccc-----cC
Confidence 489999998888777653 11 23 3899999999999999999999765 332334555554431 11
Q ss_pred HHHHHHHHHHHHHHHHH------hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 159 VSLYRLQLTNWIISNVT------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~------~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+... .+.+..... ...+.++||||++.++...++.|++.+++.. .++.||++||..
T Consensus 86 ~~~i----~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~~~~ 147 (323)
T 1sxj_B 86 IDVV----RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQS 147 (323)
T ss_dssp HHHH----HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCG
T ss_pred hHHH----HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-------CCceEEEEeCCh
Confidence 2222 222222110 2236899999999999999999999999865 677888888764
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=7e-12 Score=111.48 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=82.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++||+.+++.+...+.. .. -| .++|+||+|||||++|+++++.+.+ ......+..++.+.. ..
T Consensus 26 ~~~g~~~~~~~L~~~i~~----g~---~~-~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~-----~~ 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE----GK---LP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNASDD-----RG 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT----TC---CC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECTTSC-----CS
T ss_pred HhcCcHHHHHHHHHHHhc----CC---Cc-eEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcCccc-----cc
Confidence 488999988888776653 11 22 3799999999999999999999876 322223444443321 11
Q ss_pred HHHHHHHHHHHHHHHHHh-----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694 159 VSLYRLQLTNWIISNVTA-----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~-----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g 225 (247)
+.. +.+.+...... ..+.++++||++.|+.+.++.|++++++++ .++.||+++|..
T Consensus 90 ~~~----ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~n~~ 150 (340)
T 1sxj_C 90 IDV----VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYA 150 (340)
T ss_dssp HHH----HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred HHH----HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-------CCeEEEEEecCc
Confidence 221 22222222211 236999999999999999999999999875 577888888854
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.28 E-value=2.7e-11 Score=103.29 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+.. +..+. ....|..++|+||||||||++|+++++.+. .+++.++++.+..
T Consensus 13 ~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--------~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVE 83 (257)
T ss_dssp GSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--------CCEEEECSCSSTT
T ss_pred HhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------CCEEEEeHHHHHH
Confidence 489999999988876653 22211 012345689999999999999999998742 3688888766533
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
...+.. ...+...+ ........+++|+||+|.++. ..++.++..++... ...+.++|
T Consensus 84 ~~~~~~---~~~~~~~~-~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~vI 154 (257)
T 1lv7_A 84 MFVGVG---ASRVRDMF-EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVI 154 (257)
T ss_dssp SCCCCC---HHHHHHHH-HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEEE
T ss_pred Hhhhhh---HHHHHHHH-HHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEEE
Confidence 222211 11122222 222334457999999977654 24455666665421 12567889
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
++||..
T Consensus 155 ~~tn~~ 160 (257)
T 1lv7_A 155 AATNRP 160 (257)
T ss_dssp EEESCT
T ss_pred EeeCCc
Confidence 999875
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.28 E-value=4.2e-11 Score=111.64 Aligned_cols=145 Identities=20% Similarity=0.181 Sum_probs=91.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.+.|++.+++.+.+.+...... ......|..++|+||||||||++|+++|..+. .+|+.++++++...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--------~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--------VPFFHISGSDFVEL 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--------CCEEEEEGGGTTTC
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--------CCeeeCCHHHHHHH
Confidence 4999999999998877643210 00122455689999999999999999998742 48899988776432
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
..+. -...+...+. .......++|||||+|.++. ..++.|+..|+.-. .-.+.++|+
T Consensus 89 ~~g~---~~~~~r~lf~-~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----~~~~viVIa 159 (476)
T 2ce7_A 89 FVGV---GAARVRDLFA-QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----SKEGIIVMA 159 (476)
T ss_dssp CTTH---HHHHHHHHHH-HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----GGGTEEEEE
T ss_pred Hhcc---cHHHHHHHHH-HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----CCCCEEEEE
Confidence 2221 1112222332 22334568999999999865 25677777776421 114678999
Q ss_pred EeCCChHHHHHHHHHHHHcCcccc
Q psy1694 221 LSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 221 tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
+||.. +.+.. ..++.||++.
T Consensus 160 aTn~~-~~Ld~---allR~gRFd~ 179 (476)
T 2ce7_A 160 ATNRP-DILDP---ALLRPGRFDK 179 (476)
T ss_dssp EESCG-GGSCG---GGGSTTSSCE
T ss_pred ecCCh-hhhch---hhcccCccee
Confidence 99984 22222 2345566654
No 52
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=3.4e-12 Score=113.05 Aligned_cols=127 Identities=21% Similarity=0.238 Sum_probs=82.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.++|++.+++.+...+.. .. .| .++|+||||||||++|+++++.+... ......++.++++.. ..
T Consensus 38 ~i~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~~-----~~ 102 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKS----AN---LP-HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNASDE-----RG 102 (353)
T ss_dssp TCCSCCTTHHHHHHHTTC----TT---CC-CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECSSSC-----CC
T ss_pred HhhCCHHHHHHHHHHHhc----CC---CC-EEEEECCCCCCHHHHHHHHHHHhCCC--cccccceEEEccccc-----cc
Confidence 489999888877666542 11 12 37999999999999999999997541 111234555555432 11
Q ss_pred HHHHHHHHHHHHHH-----------HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 159 VSLYRLQLTNWIIS-----------NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 159 v~~~~~~l~~~~~~-----------~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
+..+.+.+...... ......+.++|+||++.+++..++.|++.+++.. .++.||+++|...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYVTR 175 (353)
T ss_dssp HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------CCceEEEEeCchhh
Confidence 22122111111100 0011345799999999999999999999999865 56788888886543
No 53
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=1.4e-11 Score=108.62 Aligned_cols=119 Identities=8% Similarity=0.085 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 161 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~ 161 (247)
||+.+++.+.+.++.. ++-.++|+||+|+|||++|+++++..... .....++..++.+. ....++.
T Consensus 1 g~~~~~~~L~~~i~~~--------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~--~~~~~d~~~l~~~~----~~~~id~ 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------EGISILINGEDLSYPREVSLELPEYVEKF--PPKASDVLEIDPEG----ENIGIDD 66 (305)
T ss_dssp ---CHHHHHHHHHHTC--------SSEEEEEECSSSSHHHHHHHHHHHHHHTS--CCCTTTEEEECCSS----SCBCHHH
T ss_pred ChHHHHHHHHHHHHCC--------CCcEEEEECCCCCCHHHHHHHHHHhCchh--hccCCCEEEEcCCc----CCCCHHH
Confidence 6777888887777632 12278999999999999999999863210 11122444443211 0112221
Q ss_pred HHHHHHHHHHHHHHhC----CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 162 YRLQLTNWIISNVTAC----DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 162 ~~~~l~~~~~~~l~~~----~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
+.. +....... ++.|+|+||+|.|..+.+++|++.||+++ .+++||++||...
T Consensus 67 ----ir~-li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-------~~t~fIl~t~~~~ 123 (305)
T 2gno_A 67 ----IRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWH 123 (305)
T ss_dssp ----HHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGG
T ss_pred ----HHH-HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-------CCeEEEEEECChH
Confidence 222 22333333 35899999999999999999999999987 7899999998643
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.26 E-value=1.7e-11 Score=108.35 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694 69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~ 148 (247)
.+.++..+...++||+.+++.+..++.. .. .++|+||||||||++|+++++.+.. +++.+++
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~----~~------~vll~G~pGtGKT~la~~la~~~~~--------~~~~i~~ 79 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT----GG------HILLEGVPGLAKTLSVNTLAKTMDL--------DFHRIQF 79 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH----TC------CEEEESCCCHHHHHHHHHHHHHTTC--------CEEEEEC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc----CC------eEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEec
Confidence 4567777888899999998877766653 22 5799999999999999999987532 5666655
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHH--HHhC--CCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEE
Q psy1694 149 SRIHFPNENHVSLYRLQLTNWIISN--VTAC--DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLF 220 (247)
Q Consensus 149 ~~l~~~~~~~v~~~~~~l~~~~~~~--l~~~--~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~ 220 (247)
..-..+ ...++.. ..+...+. +... ..+++||||++++++..++.|++.++++.+.. +. .-.+.++|.
T Consensus 80 ~~~~~~-~~l~g~~---~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 80 TPDLLP-SDLIGTM---IYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp CTTCCH-HHHHEEE---EEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CCCCCh-hhcCCce---eecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 210000 0000000 00000000 0000 13799999999999999999999999875432 11 123567778
Q ss_pred EeC
Q psy1694 221 LSN 223 (247)
Q Consensus 221 tSN 223 (247)
|+|
T Consensus 156 t~n 158 (331)
T 2r44_A 156 TQN 158 (331)
T ss_dssp EEC
T ss_pred ecC
Confidence 888
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.25 E-value=1.6e-12 Score=111.45 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=78.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+... ..+. ....|..++|+||||||||++|+++|+.+.. +|+.++++.+..
T Consensus 12 ~i~G~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~~ 82 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFL-KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--------PFFSMGGSSFIE 82 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHH-HCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--------CCCCCCSCTTTT
T ss_pred HhCCcHHHHHHHHHHHHHH-HChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEechHHHHH
Confidence 3889999988888776532 1110 0123345799999999999999999988532 677777655422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh---------------hHHHHHhhcccCcccccccCCceEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG---------------LLDVIIPFIDHHAVYNQISFQNTIF 218 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~---------------~~~~Ll~~Le~~~~~~~~~~~~~if 218 (247)
...+... ..+...+ ........+++||||+|.++.. .++.|+..++... ....+.++
T Consensus 83 ~~~~~~~---~~~~~~~-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~v 154 (268)
T 2r62_A 83 MFVGLGA---SRVRDLF-ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----SENAPVIV 154 (268)
T ss_dssp SCSSSCS---SSSSTTH-HHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----CSCSCCEE
T ss_pred hhcchHH---HHHHHHH-HHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----cCCCCEEE
Confidence 1111000 0001111 1222345589999999998753 3555666665421 12245789
Q ss_pred EEEeCCCh
Q psy1694 219 LFLSNSGG 226 (247)
Q Consensus 219 I~tSN~g~ 226 (247)
|+|||...
T Consensus 155 i~ttn~~~ 162 (268)
T 2r62_A 155 LAATNRPE 162 (268)
T ss_dssp EECBSCCT
T ss_pred EEecCCch
Confidence 99999763
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=4.8e-11 Score=106.17 Aligned_cols=122 Identities=8% Similarity=0.133 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC--Cccee------------ee
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVH------------KF 147 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~------------~~ 147 (247)
.|..+.+.+.++++.. +.|-.++|+||+|+|||++|+.+|+.+.+ .... .++-. .+
T Consensus 6 w~~~~~~~l~~~i~~~-------~~~~a~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLC---QQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GGHHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTC---SSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred chHHHHHHHHHHHHcC-------CcceeEEEECCCCchHHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3566666666665531 13336899999999999999999999876 2211 01000 00
Q ss_pred cccccCC---CCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 148 NSRIHFP---NENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 148 ~~~l~~~---~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
...+... ....++. +.+ +...+.. .++.|+|+||+|+|+.+.++.|++.||+++ .+++||+
T Consensus 76 ~~~~~~~~~~~~~~i~~----ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-------~~~~~Il 143 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDA----VRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFL 143 (334)
T ss_dssp EEEECCCTTCSSBCHHH----HHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEE
T ss_pred EEEEeccccCCCCCHHH----HHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-------CCeEEEE
Confidence 0111111 0111221 222 2223332 346999999999999999999999999976 6889999
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
+||..
T Consensus 144 ~t~~~ 148 (334)
T 1a5t_A 144 ATREP 148 (334)
T ss_dssp EESCG
T ss_pred EeCCh
Confidence 99874
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=1.9e-10 Score=95.03 Aligned_cols=127 Identities=15% Similarity=0.242 Sum_probs=77.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC--Ccceee-ec-------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVHK-FN------- 148 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~~-~~------- 148 (247)
.++|++.+++.+.+.+... ..|..++|+||+|+|||++++.+++.+.. .... .++... .+
T Consensus 24 ~~~g~~~~~~~l~~~l~~~-------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNC---ETGITATPCGVCDNCREIEQGR 93 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT-------CCCSEEEEECSTTSCHHHHHHHHHHHHHC---TTCSCSSCCSCSHHHHHHHTTC
T ss_pred HHhCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCcccHHHHHHhccC
Confidence 4899999998888777641 12336899999999999999999988654 2110 000000 00
Q ss_pred -cc-ccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 149 -SR-IHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 149 -~~-l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
.. +....... . ....+...+ ..+. .....++||||++.+++..++.|++.+++.. .+..+|++|
T Consensus 94 ~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~t 163 (250)
T 1njg_A 94 FVDLIEIDAASR-T-KVEDTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLAT 163 (250)
T ss_dssp CSSEEEEETTCG-G-GHHHHHHHH-HSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEE
T ss_pred CcceEEecCccc-c-cHHHHHHHH-HHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-------CceEEEEEe
Confidence 00 00000111 0 111111111 1111 1235899999999999999999999998753 567888888
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 164 ~~~ 166 (250)
T 1njg_A 164 TDP 166 (250)
T ss_dssp SCG
T ss_pred CCh
Confidence 764
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.21 E-value=6.8e-11 Score=104.88 Aligned_cols=137 Identities=5% Similarity=0.010 Sum_probs=85.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-C-CCcceeeecccccCCCC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G-TSRFVHKFNSRIHFPNE 156 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~-~~~~v~~~~~~l~~~~~ 156 (247)
.+.|.+.-++.+...+...+... +|..++++||||||||++++.+++.+......+ . .-.++++||..+..+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 48899999999998888876533 566789999999999999999999975410010 1 23577888755422110
Q ss_pred ChHHHHHH---------HHHHHHHHHHH-----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 157 NHVSLYRL---------QLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 157 ~~v~~~~~---------~l~~~~~~~l~-----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
-+..-++. .....+...+. .....+++|||+|.+. -|+.|.++++-.. .+..+.++|+++
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----~~~s~~~vI~i~ 170 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----SKNSKLSIICVG 170 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----CSSCCEEEEEEC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc----ccCCcEEEEEEe
Confidence 00000000 00111222222 2234799999999998 5777777775311 123578899999
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|.-
T Consensus 171 n~~ 173 (318)
T 3te6_A 171 GHN 173 (318)
T ss_dssp CSS
T ss_pred cCc
Confidence 875
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.19 E-value=1.4e-10 Score=103.55 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=88.7
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC---
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP--- 154 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~--- 154 (247)
..++|++..++.+.+.+.....+.. ..+..++|+||+|||||++++.+++.+.. .. ..+++.++|.....+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~-~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKD---KT-TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTT---SC-CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHHhh---hc-CeeEEEEeCccCCCHHHH
Confidence 3599999999999998887654432 12126889999999999999999988644 21 235677776432110
Q ss_pred -----------CCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 155 -----------NENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 155 -----------~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
.+.. +.....+...+...+.... ..+|||||++.+++..+..|++.+++... ..-.+..+|++|
T Consensus 91 ~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~---~~~~~~~iI~~~ 166 (389)
T 1fnn_A 91 IGEIARSLNIPFPRR-GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK---LGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHHTTCCCCSS-CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH---HSSCCEEEEEEE
T ss_pred HHHHHHHhCccCCCC-CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC---CCcCCEEEEEEE
Confidence 0000 0001112223333333333 57999999999999999999999976320 001367888888
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 167 ~~~ 169 (389)
T 1fnn_A 167 HND 169 (389)
T ss_dssp SST
T ss_pred CCc
Confidence 865
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=2.4e-11 Score=108.73 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=82.6
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc--cCCC-CCcceeeecccccCC
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY--KDKG-TSRFVHKFNSRIHFP 154 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~--~~g~-~~~~v~~~~~~l~~~ 154 (247)
+.++|++..++.+.+.+..+.... .|..++|+||+|||||++|+.+++.+.... ..+. ..+++.++|......
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNE----VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTC----CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 569999999999999888765432 344789999999999999999999864310 0112 456788887553200
Q ss_pred CCChHHHHH---------------HHHHHHHHHHHHhCCCeEEEEeCCCCCChhh-HHH-HHhhcccCcccccccCCceE
Q psy1694 155 NENHVSLYR---------------LQLTNWIISNVTACDRAIFIFDEVDKFPKGL-LDV-IIPFIDHHAVYNQISFQNTI 217 (247)
Q Consensus 155 ~~~~v~~~~---------------~~l~~~~~~~l~~~~~~vlilDEiek~~~~~-~~~-Ll~~Le~~~~~~~~~~~~~i 217 (247)
......... ..+...+...+...+ .+|||||++.++..- ++. +..+++.. .+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~--------~~~~ 166 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------ANIS 166 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS--------SCEE
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC--------cceE
Confidence 000000000 111222323333332 399999999987542 444 44443321 5678
Q ss_pred EEEEeCCC
Q psy1694 218 FLFLSNSG 225 (247)
Q Consensus 218 fI~tSN~g 225 (247)
+|+|||..
T Consensus 167 iI~~t~~~ 174 (384)
T 2qby_B 167 VIMISNDI 174 (384)
T ss_dssp EEEECSST
T ss_pred EEEEECCC
Confidence 88888865
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.19 E-value=7.5e-11 Score=105.08 Aligned_cols=120 Identities=17% Similarity=0.317 Sum_probs=79.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC--CCc--------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSR-------------- 142 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~--~~~-------------- 142 (247)
.++||+.+++.+.+.+... ..|..++|+||+|||||++|+.+++.+.. ... ..+
T Consensus 17 ~~vg~~~~~~~L~~~l~~~-------~~~~~~ll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNC---ETGITATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHT-------CCCSEEEEESCTTSSHHHHHHHHHHHHSC---TTCSCSSCCSSSHHHHHHHTSC
T ss_pred hccCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCC---CCCCCCCCCcccHHHHHHhccC
Confidence 4899999999888877642 12336899999999999999999998754 211 011
Q ss_pred ---ceeeecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCc
Q psy1694 143 ---FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQN 215 (247)
Q Consensus 143 ---~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~ 215 (247)
++.++. .....+...+ . +...+.. ..+.++||||++.++...++.|++.+++.. .+
T Consensus 87 ~~~~~~~~~-----~~~~~~~~~~----~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-------~~ 149 (373)
T 1jr3_A 87 FVDLIEIDA-----ASRTKVEDTR----D-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EH 149 (373)
T ss_dssp CSSCEEEET-----TCSCCSSCHH----H-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-------SS
T ss_pred CCceEEecc-----cccCCHHHHH----H-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-------Cc
Confidence 111111 1111111111 1 2122222 235899999999999999999999999864 57
Q ss_pred eEEEEEeCCC
Q psy1694 216 TIFLFLSNSG 225 (247)
Q Consensus 216 ~ifI~tSN~g 225 (247)
++||+++|..
T Consensus 150 ~~~Il~~~~~ 159 (373)
T 1jr3_A 150 VKFLLATTDP 159 (373)
T ss_dssp EEEEEEESCG
T ss_pred eEEEEEeCCh
Confidence 7888888754
No 62
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.18 E-value=6.9e-11 Score=116.18 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.|.|.+.+++.|.+.+.-.+..+. ....|..+||+||||||||++|+++|+.+. .+|+.++++++..
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--------~~~~~v~~~~l~s 276 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMS 276 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--------CEEEEEEHHHHHS
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--------CeEEEEEhHHhhc
Confidence 488999999989888764333222 123567899999999999999999988742 4788998877744
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
... +.....+...+. ....+..+||||||+|.+.+ .+.+.|+..|+.-. +..++++|.+|
T Consensus 277 k~~---gese~~lr~lF~-~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----~~~~V~VIaaT 347 (806)
T 3cf2_A 277 KLA---GESESNLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAAT 347 (806)
T ss_dssp SCT---THHHHHHHHHHH-HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----GGGCEEEEEEC
T ss_pred ccc---hHHHHHHHHHHH-HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----ccCCEEEEEec
Confidence 332 222333333332 22344569999999998753 25666777776532 22467888888
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 348 N~~ 350 (806)
T 3cf2_A 348 NRP 350 (806)
T ss_dssp SST
T ss_pred CCh
Confidence 874
No 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=1.1e-10 Score=95.75 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 159 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v 159 (247)
+++.+.....+.+.+..++........|..++|+||+|||||++|+++++.+.. .+ .+++.++++++.... .
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~--~~~~~~~~~~~~~~~---~ 98 (202)
T 2w58_A 27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RN--VSSLIVYVPELFREL---K 98 (202)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TT--CCEEEEEHHHHHHHH---H
T ss_pred ccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEhHHHHHHH---H
Confidence 344333333344444444443321223357899999999999999999998654 32 345555554321000 0
Q ss_pred HHHHH-HHHHHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHH-hhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 160 SLYRL-QLTNWIISNVTACDRAIFIFDEVDKFP--KGLLDVII-PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 160 ~~~~~-~l~~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll-~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
..+.. .+ ..+...+..+ .+|||||++..+ +..+..++ .+++... ..+..+|+|||...+++.+.
T Consensus 99 ~~~~~~~~-~~~~~~~~~~--~~lilDei~~~~~~~~~~~~ll~~~l~~~~------~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 99 HSLQDQTM-NEKLDYIKKV--PVLMLDDLGAEAMSSWVRDDVFGPILQYRM------FENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HC---CCC-HHHHHHHHHS--SEEEEEEECCC---CCGGGTTHHHHHHHHH------HTTCCEEEEESSCHHHHHHH
T ss_pred HHhccchH-HHHHHHhcCC--CEEEEcCCCCCcCCHHHHHHHHHHHHHHHH------hCCCCEEEEcCCCHHHHHHH
Confidence 00000 00 1112233443 599999997754 33455344 3554421 13447999999998877654
No 64
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=1.7e-12 Score=124.34 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc---cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694 70 RVLEEQLKQHVHGQELAISHICGALKNHFQNR---YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146 (247)
Q Consensus 70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~---~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~ 146 (247)
..+.+.+...++||+.+++.+.-++....... ........++|+||||||||++|+++|+.+.. ...... ...
T Consensus 287 ~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~-~~~ 362 (595)
T 3f9v_A 287 DRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR---AVYTTG-KGS 362 (595)
T ss_dssp GTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---EECCCT-TCS
T ss_pred HHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC---ceecCC-Ccc
Confidence 44667777789999988766644332210000 00122336899999999999999999876421 000000 001
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---cc---cCCceEEEE
Q psy1694 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIFLF 220 (247)
Q Consensus 147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~~---~~~~~ifI~ 220 (247)
.++.+....... .+.+. .....+.+..+.+++++|||+++|+++.++.|+++||++.+.. +. --.++.+|+
T Consensus 363 ~~~~l~~~~~~~--~~~g~-~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 363 TAAGLTAAVVRE--KGTGE-YYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp TTTTSEEECSSG--GGTSS-CSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccccccceeeec--ccccc-ccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 111111100000 00000 0000123445567999999999999999999999999987541 21 224678999
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
|||..
T Consensus 440 atNp~ 444 (595)
T 3f9v_A 440 AGNPK 444 (595)
T ss_dssp EECCT
T ss_pred EcCCc
Confidence 99964
No 65
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=9.9e-11 Score=103.90 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=76.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-----------------
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS----------------- 141 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~----------------- 141 (247)
.++||+.+++.+.+.+. ... +.|. ++|+||+|+|||++++++++.+++ .....
T Consensus 15 ~~vg~~~~~~~l~~~~~---~~~---~~~~-~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD---QPR---DLPH-LLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GCCSCHHHHHHHHTTTT---CTT---CCCC-EEEECSTTSSHHHHHHTHHHHHSC---TTCCC-----------------
T ss_pred HhcCCHHHHHHHHHHHh---hCC---CCCe-EEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccce
Confidence 38899988876655441 111 1333 899999999999999999997665 22110
Q ss_pred -------cceeeecccccCCCCChHHHHHHHHHHHHHHHHH-------------hCCCeEEEEeCCCCCChhhHHHHHhh
Q psy1694 142 -------RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------------ACDRAIFIFDEVDKFPKGLLDVIIPF 201 (247)
Q Consensus 142 -------~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-------------~~~~~vlilDEiek~~~~~~~~Ll~~ 201 (247)
+++.++.+. .+... .....+.+..... ..+..++||||++.+++..++.|++.
T Consensus 85 ~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSD-----MGNND--RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -CCEECSSEEEECCC---------CC--HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred eeeecccceEEecHhh-----cCCcc--hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 111111111 00000 0011222211111 22457999999999999999999999
Q ss_pred cccCcccccccCCceEEEEEeCCCh
Q psy1694 202 IDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 202 Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
|++.. .++.||++||...
T Consensus 158 le~~~-------~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 158 MEKYS-------KNIRLIMVCDSMS 175 (354)
T ss_dssp HHHST-------TTEEEEEEESCSC
T ss_pred HHhhc-------CCCEEEEEeCCHH
Confidence 99864 5678888888644
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.16 E-value=7e-12 Score=110.97 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=38.3
Q ss_pred hCCCeEEEEeCCCCCChhhHHHHHhhcccCcc--c-cccc---CCceEEEEEeCCCh
Q psy1694 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV--Y-NQIS---FQNTIFLFLSNSGG 226 (247)
Q Consensus 176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~--~-~~~~---~~~~ifI~tSN~g~ 226 (247)
.+.++++||||++++++..++.|+++++++.. . .+.. -.+.++|+|+|...
T Consensus 142 ~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~ 198 (350)
T 1g8p_A 142 RANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE 198 (350)
T ss_dssp HHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS
T ss_pred ecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC
Confidence 34578999999999999999999999998641 1 1111 12678999999643
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.16 E-value=8.8e-11 Score=109.24 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+. .. .+++|+||||||||++|+.+|+.+.. .. ...+++.++++
T Consensus 181 ~iiGr~~~i~~l~~~l~r~--~~------~~~LL~G~pG~GKT~la~~la~~l~~---~~~p~~l~~~~~~~l~~~---- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR--TK------NNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDMG---- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS--SS------CEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred CccCcHHHHHHHHHHHhcc--CC------CCeEEECCCCCCHHHHHHHHHHHHHh---CCCChhhcCCeEEEeeCC----
Confidence 4999999999988877641 12 25799999999999999999999754 22 13456666655
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
..+.+.+...+...+ ..+.....+++|+| .+.+.++.|+++|+++ +..+|+++|...
T Consensus 246 --~~~~g~~e~~~~~~~-~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------~v~vI~at~~~e 302 (468)
T 3pxg_A 246 --TKYRGEFEDRLKKVM-DEIRQAGNIILFID----AAIDASNILKPSLARG---------ELQCIGATTLDE 302 (468)
T ss_dssp ---------CTTHHHHH-HHHHTCCCCEEEEC----C--------CCCTTSS---------SCEEEEECCTTT
T ss_pred --ccccchHHHHHHHHH-HHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------CEEEEecCCHHH
Confidence 111122222223333 34455667899999 5667889999999874 456788877654
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.15 E-value=4.2e-11 Score=106.70 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=83.9
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCcceeeecccccCCCC
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRIHFPNE 156 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~~~~~~l~~~~~ 156 (247)
..++|++..++.+.+.+...... ..+..++|+||||||||++|+.+++.+..... .+...+++.++|.....+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY- 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-
Confidence 35899999999888877654322 23446899999999999999999998643100 0223567788775431100
Q ss_pred ChHHH--------------HHHHHHHHHHHHHHhCC-CeEEEEeCCCCCChh--hHHHHHhhcccCcccccccCCceEEE
Q psy1694 157 NHVSL--------------YRLQLTNWIISNVTACD-RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 157 ~~v~~--------------~~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
..... -...+...+...+.... ..+|||||++.++.. .++.|..+++...... .-.+.++|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~--~~~~~~~I 171 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG--DRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------CEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC--CCceEEEE
Confidence 00000 01112233333443333 469999999999876 6777776665421000 02467888
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
++||..
T Consensus 172 ~~t~~~ 177 (387)
T 2v1u_A 172 GITNSL 177 (387)
T ss_dssp EECSCS
T ss_pred EEECCC
Confidence 888865
No 69
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.14 E-value=9.3e-11 Score=103.35 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=70.8
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEE
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIF 182 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vl 182 (247)
+..++|+||||||||++|+++++.+.. . ..+++.+++..+. ..+.+.+. ..+..... ..+++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~--~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~vL 102 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---R--GYRVIYSSADDFA-------QAMVEHLKKGTINEFRNMYK--SVDLL 102 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH---T--TCCEEEEEHHHHH-------HHHHHHHHHTCHHHHHHHHH--TCSEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH---C--CCEEEEEEHHHHH-------HHHHHHHHcCcHHHHHHHhc--CCCEE
Confidence 336799999999999999999998754 3 3467777765531 11222111 11222222 35899
Q ss_pred EEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChH---HHHHHHHHHHH
Q psy1694 183 IFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT---EIMNTFLELRK 238 (247)
Q Consensus 183 ilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~---~i~~~~~~~~~ 238 (247)
||||++.++. ..++.++.+++... + .+..+|+++|.... .+...+.....
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~-----~-~~~~iii~~~~~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLY-----L-LEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHH-----H-TTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred EEcCcccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEecCChHHHHHhhhHhhhccc
Confidence 9999999986 67888887776421 1 23357777776655 35555555443
No 70
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.13 E-value=9.8e-11 Score=108.15 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=84.1
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
.+.|++... ...++...+..+. ++..++|+||||+|||++|+++++.+.. .....+++.+++..+
T Consensus 107 fv~g~~n~~--a~~~~~~~a~~~~---~~~~lll~Gp~G~GKTtLa~aia~~l~~---~~~~~~v~~v~~~~~------- 171 (440)
T 2z4s_A 107 FVVGPGNSF--AYHAALEVAKHPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF------- 171 (440)
T ss_dssp CCCCTTTHH--HHHHHHHHHHSTT---SSCCEEEECSSSSSHHHHHHHHHHHHHH---HCCSSCEEEEEHHHH-------
T ss_pred cCCCCchHH--HHHHHHHHHhCCC---CCCeEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHH-------
Confidence 355755433 2233444444332 2446899999999999999999998754 322346677766543
Q ss_pred HHHHHHHHHH----HHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHH---H
Q psy1694 159 VSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE---I 229 (247)
Q Consensus 159 v~~~~~~l~~----~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~---i 229 (247)
...+.+.+.. .+..... ...+++||||++.++. ..++.++..++... + .+..+|++||..... +
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-----~-~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-----T-TTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEECCCHHHHHHH
Confidence 1112222211 1111111 1568999999999986 68888888876521 1 234577788876665 5
Q ss_pred HHHHHHHHHcC
Q psy1694 230 MNTFLELRKSG 240 (247)
Q Consensus 230 ~~~~~~~~~~g 240 (247)
...+......|
T Consensus 245 ~~~L~sR~~~g 255 (440)
T 2z4s_A 245 QDRLVSRFQMG 255 (440)
T ss_dssp CHHHHHHHHSS
T ss_pred HHHHHhhccCC
Confidence 55666655544
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.5e-10 Score=108.93 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=73.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc----CC-----CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY----HN-----TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS 149 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~-----~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~ 149 (247)
.++|++.+++.+.+.+..+..... .+ ..+..++|+||||||||++|+++|+.+ + .+++.++++
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~-------~~~i~in~s 111 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G-------YDILEQNAS 111 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T-------CEEEEECTT
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C-------CCEEEEeCC
Confidence 499999999999999887542210 00 123478999999999999999999985 2 367777775
Q ss_pred cccCCCCChHHHHHHHHHHH-----HHHHH--------HhCCCeEEEEeCCCCCChhh---HHHHHhhcccC
Q psy1694 150 RIHFPNENHVSLYRLQLTNW-----IISNV--------TACDRAIFIFDEVDKFPKGL---LDVIIPFIDHH 205 (247)
Q Consensus 150 ~l~~~~~~~v~~~~~~l~~~-----~~~~l--------~~~~~~vlilDEiek~~~~~---~~~Ll~~Le~~ 205 (247)
..... ......+... +.+.+ ......+|||||+|.++... .+.|++++++.
T Consensus 112 ~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 112 DVRSK-----TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp SCCCH-----HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred CcchH-----HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 53210 0000000000 00001 12456899999999998754 47888888874
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.11 E-value=8.2e-10 Score=103.50 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=83.0
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|++.+++.+.+.+..+. .+. ....|..++|+||||||||++|++|+..+. .+|+.++++.+..
T Consensus 32 dv~G~~~~k~~l~~lv~~l~-~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--------~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVE 102 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHH-CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--------CCEEEEEGGGGTS
T ss_pred HcCCcHHHHHHHHHHHHHhh-chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEehhHHHH
Confidence 48999999999888766432 211 112345689999999999999999988742 4789998877632
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCC---CeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCce
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACD---RAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNT 216 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~---~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ 216 (247)
.. ++.. ...+...++.+. .+++|+||++.++. ..++.++..|+.+. .-+..
T Consensus 103 ~~---~g~~----~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----~~~~v 170 (499)
T 2dhr_A 103 MF---VGVG----AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAI 170 (499)
T ss_dssp SC---TTHH----HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----SSCCC
T ss_pred hh---hhhH----HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----cCccE
Confidence 22 2211 233444455543 38999999988753 24566776666543 12456
Q ss_pred EEEEEeCCC
Q psy1694 217 IFLFLSNSG 225 (247)
Q Consensus 217 ifI~tSN~g 225 (247)
++|.++|..
T Consensus 171 iviAatn~p 179 (499)
T 2dhr_A 171 VVMAATNRP 179 (499)
T ss_dssp EEEECCSCG
T ss_pred EEEEecCCh
Confidence 777777765
No 73
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.10 E-value=8.4e-10 Score=88.97 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=64.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH----HHHHHHHhCCCeEE
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN----WIISNVTACDRAIF 182 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~----~~~~~l~~~~~~vl 182 (247)
+..++|+||+|+|||+++++++..+... .|. ..+.+++.++ ...+...... .....+. ...++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~g~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~ll 104 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEK--KGI--RGYFFDTKDL-------IFRLKHLMDEGKDTKFLKTVL--NSPVL 104 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHH--SCC--CCCEEEHHHH-------HHHHHHHHHHTCCSHHHHHHH--TCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH--cCC--eEEEEEHHHH-------HHHHHHHhcCchHHHHHHHhc--CCCEE
Confidence 3468999999999999999999987521 332 2333333222 1111110000 1112222 34799
Q ss_pred EEeCCC--CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694 183 IFDEVD--KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 229 (247)
Q Consensus 183 ilDEie--k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i 229 (247)
+|||++ .+++..+..+..++++... .+..+|+|||...+++
T Consensus 105 ilDE~~~~~~~~~~~~~l~~ll~~~~~------~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 105 VLDDLGSERLSDWQRELISYIITYRYN------NLKSTIITTNYSLQRE 147 (180)
T ss_dssp EEETCSSSCCCHHHHHHHHHHHHHHHH------TTCEEEEECCCCSCC-
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHHH------cCCCEEEEcCCChhHh
Confidence 999998 5678788888888876320 3457899999987763
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.04 E-value=7.1e-10 Score=106.17 Aligned_cols=63 Identities=5% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-c-------------cCCceEEEEEeCCCh-HHHHHHHHH
Q psy1694 173 NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I-------------SFQNTIFLFLSNSGG-TEIMNTFLE 235 (247)
Q Consensus 173 ~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~-------------~~~~~ifI~tSN~g~-~~i~~~~~~ 235 (247)
.+..+.++++||||++.+++.+|+.|+++|+++.+... . --.++.+|+++|... +.+...+.+
T Consensus 196 ~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~ 273 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRS 273 (604)
T ss_dssp HHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHH
T ss_pred eeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHH
Confidence 44566778999999999999999999999998764321 0 012567999998642 234444444
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.03 E-value=2.8e-10 Score=111.93 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=90.8
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|.+.+++.+.+.+.-....+. ....|..+||+||||||||++|+++|..+- .+|+.+..+++..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--------~~f~~v~~~~l~s 549 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLT 549 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--------CEEEECCHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--------CceEEeccchhhc
Confidence 367888888888877653222211 123455789999999999999999988842 4888888776643
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
...+. -...+...+ ..-+....+||||||+|.+-+ .+.+.||..||.-. ...+.++|
T Consensus 550 ~~vGe---se~~vr~lF-~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----~~~~V~vi 620 (806)
T 3cf2_A 550 MWFGE---SEANVREIF-DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII 620 (806)
T ss_dssp TTCSS---CHHHHHHHH-HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----SSSSEEEE
T ss_pred cccch---HHHHHHHHH-HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----CCCCEEEE
Confidence 32221 122223223 223444569999999998732 24677888887532 12467788
Q ss_pred EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694 220 FLSNSGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 220 ~tSN~g~~~i~~~~~~~~~~g~~Re 244 (247)
.+||.. +.|.. ..++.||+..
T Consensus 621 ~aTN~p-~~lD~---AllRpgRfd~ 641 (806)
T 3cf2_A 621 GATNRP-DIIDP---AILRPGRLDQ 641 (806)
T ss_dssp CC-CCS-SSSCH---HHHSTTTSCC
T ss_pred EeCCCc-hhCCH---hHcCCCcceE
Confidence 888876 33443 3456677644
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.03 E-value=8.9e-10 Score=109.39 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+. .+.+++|+||||||||++|+.+|+.+.. ... ..+++.++++.+..
T Consensus 171 ~viGr~~~i~~l~~~l~~~--------~~~~vlL~G~pG~GKT~la~~la~~l~~---~~~p~~l~~~~~~~l~~~~l~~ 239 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIVK---GDVPEGLKGKRIVSLQMGSLLA 239 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS--------SCCCCEEEECTTSCHHHHHHHHHHHHHH---TCSCTTSTTCEEEEECC-----
T ss_pred ccCCcHHHHHHHHHHHhcC--------CCCceEEEcCCCCCHHHHHHHHHHHHhc---CCCchhhcCCeEEEeehHHhhc
Confidence 4899999888888777531 1224689999999999999999998744 211 34567777665532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
. ..+.+.+...+...+. .+... ...++||||++.+. .++++.|+++++.+. ..+|+++|.
T Consensus 240 g-~~~~g~~~~~l~~~~~-~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~---------i~~I~at~~ 308 (854)
T 1qvr_A 240 G-AKYRGEFEERLKAVIQ-EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE---------LRLIGATTL 308 (854)
T ss_dssp -------CHHHHHHHHHH-HHHTTCSSEEEEECCC-------------------HHHHHTTC---------CCEEEEECH
T ss_pred c-CccchHHHHHHHHHHH-HHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC---------eEEEEecCc
Confidence 1 1122234444444443 23333 45799999999997 566788999987743 346666654
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.03 E-value=7.5e-10 Score=109.38 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=87.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.++|++.+++.+.+.+...+..+. .-..|..++|+||||||||++|++++..+- .+++.++++++..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--------~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMS 276 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--------CEEEEEEHHHHSS
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------CcEEEEEchHhhh
Confidence 499999999999998876443322 123455799999999999999999987642 3688888877654
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS 222 (247)
...+. ....+...+.. ......+++|+||++.+.+ .+++.|+..++... ...+.++|++|
T Consensus 277 ~~~g~---~~~~l~~vf~~-a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----~~~~v~vI~at 347 (806)
T 1ypw_A 277 KLAGE---SESNLRKAFEE-AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAAT 347 (806)
T ss_dssp SSTTH---HHHHHHHHHHH-HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----TTSCCEEEEEC
T ss_pred hhhhh---HHHHHHHHHHH-HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----ccccEEEeccc
Confidence 33332 33333333322 2333458999999987753 35677888877532 11456788888
Q ss_pred CCC
Q psy1694 223 NSG 225 (247)
Q Consensus 223 N~g 225 (247)
|..
T Consensus 348 n~~ 350 (806)
T 1ypw_A 348 NRP 350 (806)
T ss_dssp SCT
T ss_pred CCc
Confidence 864
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.02 E-value=7.6e-10 Score=108.33 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=79.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+. .+..++|+||||||||++|+.+++.+.. ... ..+++..+++.+..
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~---~~v~~~~~~~~~~~~~~~~l~~ 255 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHH---TCSCGGGTTCEEEECCCC---C
T ss_pred CccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHh---CCCChhhcCCEEEEEcHHHHhc
Confidence 5899999998888776532 2236799999999999999999998754 221 22344444444322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
.. .+.+.+...+...+ ..+..+..+++||||++.+ ..+.++.|+++++.+ +..+|+++|.
T Consensus 256 ~~-~~~g~~e~~l~~~~-~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~---------~~~~I~at~~ 324 (758)
T 1r6b_X 256 GT-KYRGDFEKRFKALL-KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTTY 324 (758)
T ss_dssp CC-CCSSCHHHHHHHHH-HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------CCEEEEEECH
T ss_pred cc-cccchHHHHHHHHH-HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---------CeEEEEEeCc
Confidence 11 22233444444444 3445556799999999998 345677788888764 3455666553
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.02 E-value=5.6e-09 Score=90.48 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHHhhhcc-----cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 80 VHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 80 l~Gq~~a~~~l~~~l~~~~~~~-----~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
+.|.+.+++.+.+.+......+ ..-..|..++|+||||||||++++++|..+ . .+++.++...+...
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~-------~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G-------LNFISVKGPELLNM 83 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T-------CEEEEEETTTTCSS
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C-------CCEEEEEcHHHHhh
Confidence 7777888877776653221111 112233458999999999999999998873 2 15777776554221
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 223 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN 223 (247)
+.+.....+.... ........+++++||++.+.. ...+.++..|+.+. .-+..+++.++|
T Consensus 84 ---~~~~~~~~i~~vf-~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----~~~~~i~ia~tn 154 (274)
T 2x8a_A 84 ---YVGESERAVRQVF-QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----ARQQVFIMAATN 154 (274)
T ss_dssp ---TTHHHHHHHHHHH-HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----STTCEEEEEEES
T ss_pred ---hhhHHHHHHHHHH-HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----ccCCEEEEeecC
Confidence 2222222222222 222234558999999998632 34555666666542 235567777777
Q ss_pred CChHHHHHHHHHHHHcCcccc
Q psy1694 224 SGGTEIMNTFLELRKSGERYI 244 (247)
Q Consensus 224 ~g~~~i~~~~~~~~~~g~~Re 244 (247)
.. +.+.. ..++.||+..
T Consensus 155 ~p-~~LD~---al~r~gRfd~ 171 (274)
T 2x8a_A 155 RP-DIIDP---AILRPGRLDK 171 (274)
T ss_dssp CG-GGSCH---HHHSTTSSCE
T ss_pred Ch-hhCCH---hhcCcccCCe
Confidence 64 33322 2345566543
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.00 E-value=7.4e-10 Score=108.53 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=69.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~ 153 (247)
.++|++..++.+.+.+.+. .+.+++|+||||||||++|+.+|+.+.. ... ..+++.+++
T Consensus 181 ~iiG~~~~i~~l~~~l~~~--------~~~~vLL~G~pGtGKT~la~~la~~l~~---~~~p~~l~~~~~~~~~~----- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDM----- 244 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred CccCchHHHHHHHHHHhCC--------CCCCeEEECCCCCCHHHHHHHHHHHHhc---CCCChhhcCCeEEEecc-----
Confidence 4999999999998877641 2225799999999999999999999754 221 233444443
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 226 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~ 226 (247)
...+.+.++..+...+ +.+.....+++||| .+.+.++.|++.|+++ +..+|+++|...
T Consensus 245 -g~~~~G~~e~~l~~~~-~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------~v~~I~at~~~~ 302 (758)
T 3pxi_A 245 -GTKYRGEFEDRLKKVM-DEIRQAGNIILFID----AAIDASNILKPSLARG---------ELQCIGATTLDE 302 (758)
T ss_dssp ---------CTTHHHHH-HHHHTCCCCEEEEC----C--------CCCTTSS---------SCEEEEECCTTT
T ss_pred -cccccchHHHHHHHHH-HHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------CEEEEeCCChHH
Confidence 1111222222333333 33455667999999 5667899999999864 457888887654
No 81
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=9.3e-10 Score=97.79 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=82.1
Q ss_pred hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccC---
Q psy1694 78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHF--- 153 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~--- 153 (247)
..++|++..++.+.+.+....... .+..++++||+|||||++++.+++.+.. ... ..+++.++|.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~----~~~~vli~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE----KPNNIFIYGLTGTGKTAVVKFVLSKLHK---KFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC----CCCCEEEEECTTSSHHHHHHHHHHHHHH---HTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEECCCCCCHHH
Confidence 358999999988887776543221 3446899999999999999999988643 211 24567776543210
Q ss_pred -----------CCCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCC----hhhHHHHHhhcccCcccccccCCceE
Q psy1694 154 -----------PNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTI 217 (247)
Q Consensus 154 -----------~~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~~~~~i 217 (247)
+.+.. +.-...+...+...+.... ..+|+|||++.+. ...+..|++.+++. .-.+..
T Consensus 93 ~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------~~~~~~ 165 (386)
T 2qby_A 93 VLADLLESLDVKVPFT-GLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------NKSKIS 165 (386)
T ss_dssp HHHHHTTTTSCCCCSS-SCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------CC--EE
T ss_pred HHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------CCCeEE
Confidence 00000 0001122233434444443 5799999999885 56777787777642 114667
Q ss_pred EEEEeCCC
Q psy1694 218 FLFLSNSG 225 (247)
Q Consensus 218 fI~tSN~g 225 (247)
+|+++|..
T Consensus 166 ~I~~~~~~ 173 (386)
T 2qby_A 166 FIGITNDV 173 (386)
T ss_dssp EEEEESCG
T ss_pred EEEEECCC
Confidence 88888754
No 82
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.97 E-value=7.4e-10 Score=97.63 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694 90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN 168 (247)
Q Consensus 90 l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~ 168 (247)
+.+.+..++.... +..+..++|+||||||||++|+++++.+. . .+. +++.++++.+......... .+.+.
T Consensus 136 ~~~~~~~~i~~~~-~~~~~~lll~G~~GtGKT~La~aia~~~~~~---~g~--~v~~~~~~~l~~~l~~~~~--~~~~~- 206 (308)
T 2qgz_A 136 AFSAILDFVEQYP-SAEQKGLYLYGDMGIGKSYLLAAMAHELSEK---KGV--STTLLHFPSFAIDVKNAIS--NGSVK- 206 (308)
T ss_dssp HHHHHHHHHHHCS-CSSCCEEEEECSTTSSHHHHHHHHHHHHHHH---SCC--CEEEEEHHHHHHHHHCCCC------C-
T ss_pred HHHHHHHHHHhcc-ccCCceEEEECCCCCCHHHHHHHHHHHHHHh---cCC--cEEEEEHHHHHHHHHHHhc--cchHH-
Confidence 3344444544322 11234789999999999999999999876 5 432 3344444322100000000 00000
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHh-hcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 169 WIISNVTACDRAIFIFDEVDKFP--KGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 169 ~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~-~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
.....+.. .++|||||++..+ +..++.|+. +++.+. ..+..+|+|||...+++.+.
T Consensus 207 ~~~~~~~~--~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~------~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 207 EEIDAVKN--VPVLILDDIGAEQATSWVRDEVLQVILQYRM------LEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp CTTHHHHT--SSEEEEETCCC------CTTTTHHHHHHHHH------HHTCCEEEEESSCHHHHHTT
T ss_pred HHHHHhcC--CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHH------HCCCcEEEECCCCHHHHHHH
Confidence 11122333 3699999996654 344443433 555421 12447999999998887654
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.96 E-value=1.3e-09 Score=90.58 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++|+||||||||++|+.+++.+.. .+ .+++.++++.+....... + ..+ ....++||||++
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~-----------~-~~~--~~~~vliiDe~~ 114 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANE---LE--RRSFYIPLGIHASISTAL-----------L-EGL--EQFDLICIDDVD 114 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH---TT--CCEEEEEGGGGGGSCGGG-----------G-TTG--GGSSEEEEETGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEHHHHHHHHHHH-----------H-Hhc--cCCCEEEEeccc
Confidence 6899999999999999999998755 32 355666665542211111 1 011 235799999999
Q ss_pred CCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694 189 KFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 227 (247)
Q Consensus 189 k~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~ 227 (247)
.++... ++.|+.+++... +..+..+|++||...+
T Consensus 115 ~~~~~~~~~~~l~~~l~~~~-----~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 115 AVAGHPLWEEAIFDLYNRVA-----EQKRGSLIVSASASPM 150 (242)
T ss_dssp GGTTCHHHHHHHHHHHHHHH-----HHCSCEEEEEESSCTT
T ss_pred cccCCHHHHHHHHHHHHHHH-----HcCCCeEEEEcCCCHH
Confidence 998766 888888876532 1122247788876553
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=5.4e-09 Score=88.76 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=74.5
Q ss_pred hcCChHHHHHHHHHHHHHhhh----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.++..+.+....+.. .......|..++|+||||||||+++++++..+. .+++.++...+...
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--------~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVEM 88 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHHHHHS
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--------CCEEEeeHHHHHHH
Confidence 388888888877766553311 011112344589999999999999999988742 36777775443211
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
..+. ....+...+ +.......+++++||++.+.. ..++.++..|+.+. .-+..+++.
T Consensus 89 ~~~~---~~~~i~~~~-~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----~~~~~i~~a 159 (254)
T 1ixz_A 89 FVGV---GAARVRDLF-ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVMA 159 (254)
T ss_dssp CTTH---HHHHHHHHH-HHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-----TTCCEEEEE
T ss_pred HhhH---HHHHHHHHH-HHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-----CCCCEEEEE
Confidence 1111 111111112 222223458999999976532 23556666666543 123456667
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
++|..
T Consensus 160 ~t~~p 164 (254)
T 1ixz_A 160 ATNRP 164 (254)
T ss_dssp EESCG
T ss_pred ccCCc
Confidence 77653
No 85
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.88 E-value=1.3e-08 Score=87.83 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=74.7
Q ss_pred hcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694 79 HVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 154 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~ 154 (247)
.++|++.+++.+.+....+... ..+...|..++|+||||||||+++++++..+. .+++.+++..+...
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--------~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVEM 112 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHHHHHS
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--------CCEEEecHHHHHHH
Confidence 4889998888887766543210 11112333589999999999999999988742 36777776543211
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694 155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 220 (247)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~ 220 (247)
..+. ....+...+ +.......+++++||++.++. ...+.++..|+.+. .-+..+++.
T Consensus 113 ~~~~---~~~~i~~~~-~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-----~~~~~i~~a 183 (278)
T 1iy2_A 113 FVGV---GAARVRDLF-ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVMA 183 (278)
T ss_dssp TTTH---HHHHHHHHH-HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC-----TTCCEEEEE
T ss_pred HhhH---HHHHHHHHH-HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-----CCCCEEEEE
Confidence 1111 111122222 222233458999999976531 22344444454432 224567777
Q ss_pred EeCCC
Q psy1694 221 LSNSG 225 (247)
Q Consensus 221 tSN~g 225 (247)
++|..
T Consensus 184 ~t~~p 188 (278)
T 1iy2_A 184 ATNRP 188 (278)
T ss_dssp EESCT
T ss_pred ecCCc
Confidence 77764
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.87 E-value=1.6e-10 Score=114.06 Aligned_cols=131 Identities=14% Similarity=0.200 Sum_probs=79.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694 79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~ 153 (247)
.+.|++.+++.+.+.+......+. ....+..++|+||||||||++|+++|..+- .+|+.++++.+..
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--------~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLT 549 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--------CCCCCCCCSSSTT
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--------CCEEEEechHhhh
Confidence 367888888777766542111111 012344689999999999999999999853 3678887766543
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------------hhhHHHHHhhcccCcccccccCCceEEE
Q psy1694 154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------------KGLLDVIIPFIDHHAVYNQISFQNTIFL 219 (247)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI 219 (247)
...+. ....+...+ ........+++||||+|.+. ..+++.|+..|+... +..+.++|
T Consensus 550 ~~~g~---~~~~i~~~f-~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----~~~~v~vI 620 (806)
T 1ypw_A 550 MWFGE---SEANVREIF-DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII 620 (806)
T ss_dssp CCTTT---SSHHHHHHH-HHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------CCBCC
T ss_pred hhcCc---cHHHHHHHH-HHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----ccCCeEEE
Confidence 22111 111122222 22333345799999998863 245678888887642 33578899
Q ss_pred EEeCCCh
Q psy1694 220 FLSNSGG 226 (247)
Q Consensus 220 ~tSN~g~ 226 (247)
+|||...
T Consensus 621 ~tTN~~~ 627 (806)
T 1ypw_A 621 GATNRPD 627 (806)
T ss_dssp CCCBSCG
T ss_pred EecCCcc
Confidence 9999753
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.84 E-value=1.1e-09 Score=101.50 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHH-HHHhhccccCCCCCcceeeec
Q psy1694 70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI-VSSIFKRYKDKGTSRFVHKFN 148 (247)
Q Consensus 70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~l-a~~l~~~~~~g~~~~~v~~~~ 148 (247)
+.+.+.+.. ++||+.++..+.-++... ........++|+.|+||| ||.+|+.+ ++.+ + . ..|+....
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG---~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p---R---~~ft~g~~ 273 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSC---VGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-P---R---GVYVDLRR 273 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTC---CSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-S---S---EEEEEGGG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCC---ccccCCceeEEEECCCCh-HHHHHHHHHHHhC-C---C---eEEecCCC
Confidence 456677777 999998776665444321 100111226899999999 99999999 6653 3 1 12221111
Q ss_pred cc-------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-cc-CCceEEE
Q psy1694 149 SR-------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-IS-FQNTIFL 219 (247)
Q Consensus 149 ~~-------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~~-~~~~ifI 219 (247)
+. ...+ .+ .. + -.|.+..+.++++++||+++|++..|.+|+++||+++++.. .. -.++.+|
T Consensus 274 ss~~gLt~s~r~~-tG-~~-~-------~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VI 343 (506)
T 3f8t_A 274 TELTDLTAVLKED-RG-WA-L-------RAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVL 343 (506)
T ss_dssp CCHHHHSEEEEES-SS-EE-E-------EECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEE
T ss_pred CCccCceEEEEcC-CC-cc-c-------CCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEE
Confidence 10 1111 11 00 0 11456667889999999999999999999999999875432 21 1356788
Q ss_pred EEeCCC
Q psy1694 220 FLSNSG 225 (247)
Q Consensus 220 ~tSN~g 225 (247)
.|+|--
T Consensus 344 AA~NP~ 349 (506)
T 3f8t_A 344 AAINPG 349 (506)
T ss_dssp EEECCC
T ss_pred EEeCcc
Confidence 888864
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.78 E-value=1.1e-08 Score=80.69 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=67.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.+.|+||+|+|||+++++++..+.. .| .+.+.++...+... ..+. ...+++|||++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~---~g--~~~~~~~~~~~~~~-----------------~~~~--~~~lLilDE~~ 93 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE---AG--KNAAYIDAASMPLT-----------------DAAF--EAEYLAVDQVE 93 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT---TT--CCEEEEETTTSCCC-----------------GGGG--GCSEEEEESTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEcHHHhhHH-----------------HHHh--CCCEEEEeCcc
Confidence 5788999999999999999998654 33 23444444333111 0011 24799999999
Q ss_pred CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH--HHHHHHHHcC
Q psy1694 189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM--NTFLELRKSG 240 (247)
Q Consensus 189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~--~~~~~~~~~g 240 (247)
.+++..+..|..+++... +-.++++|+|||..++++. +.+.+.+..|
T Consensus 94 ~~~~~~~~~l~~li~~~~-----~~g~~~iiits~~~p~~l~~~~~L~SRl~~g 142 (149)
T 2kjq_A 94 KLGNEEQALLFSIFNRFR-----NSGKGFLLLGSEYTPQQLVIREDLRTRMAYC 142 (149)
T ss_dssp CCCSHHHHHHHHHHHHHH-----HHTCCEEEEEESSCTTTSSCCHHHHHHGGGS
T ss_pred ccChHHHHHHHHHHHHHH-----HcCCcEEEEECCCCHHHccccHHHHHHHhcC
Confidence 998877888888877532 1123347889998776543 4445554444
No 89
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.78 E-value=4.7e-08 Score=86.69 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=66.3
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 158 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~ 158 (247)
..+||..+.+.+...+....... ..|-.++|+||||+|||++|++++..+.. ++.....+.+ ..
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~-----~~ 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRG---EVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVL-----VK 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHT---CCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTC-----CS
T ss_pred HccCcHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHh-----cC
Confidence 37899888888777766432111 12235899999999999999999998632 2222211111 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
.+ .+.... . ......++++||++.+++..++.|++.++.+
T Consensus 90 ~~----~l~~~~-~--~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 90 QG----DMAAIL-T--SLERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp HH----HHHHHH-H--HCCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred HH----HHHHHH-H--HccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 11 111111 1 1234689999999999998999998888764
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.57 E-value=2.1e-07 Score=83.58 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=80.5
Q ss_pred hhcCChHHHHHHHHHHH-HHhhhcccCCCCCeEEEE--eecCCChHHHHHHHHHHHhhccc-cCCCCCcceeeecccccC
Q psy1694 78 QHVHGQELAISHICGAL-KNHFQNRYHNTKALAISL--HGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNSRIHF 153 (247)
Q Consensus 78 ~~l~Gq~~a~~~l~~~l-~~~~~~~~~~~kpl~lll--~G~~GtGKt~~A~~la~~l~~~~-~~g~~~~~v~~~~~~l~~ 153 (247)
..++|.+..++.+.+.+ ....... ...+..+++ +||+|+|||++++.+++.+.... ..+...+++.++|.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 45899999999998888 6654331 023446788 99999999999999998854300 001123455666532110
Q ss_pred --------------CCCChHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCh------hhHHHHHhhcccCccccccc
Q psy1694 154 --------------PNENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQIS 212 (247)
Q Consensus 154 --------------~~~~~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~~~ 212 (247)
+.+.. +.-...+...+...+.. ....+|||||++.+.. ..+..+++.+++.. .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~----~~ 174 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVR-GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP----SR 174 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCT-TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC----CT
T ss_pred HHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc----cC
Confidence 00000 00001112233333332 3346899999999753 66666777766421 01
Q ss_pred C--CceEEEEEeCCC
Q psy1694 213 F--QNTIFLFLSNSG 225 (247)
Q Consensus 213 ~--~~~ifI~tSN~g 225 (247)
- .+..+|+++|..
T Consensus 175 ~~~~~v~lI~~~~~~ 189 (412)
T 1w5s_A 175 DGVNRIGFLLVASDV 189 (412)
T ss_dssp TSCCBEEEEEEEEET
T ss_pred CCCceEEEEEEeccc
Confidence 1 467788888643
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.55 E-value=5.4e-08 Score=80.94 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH
Q psy1694 91 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI 170 (247)
Q Consensus 91 ~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~ 170 (247)
...++.++..- |+ ...++|+||||||||++|.++++.+.+ +. ..|+ +.... . + +
T Consensus 45 ~~~l~~~~~~i--Pk-kn~ili~GPPGtGKTt~a~ala~~l~g---~i--~~fa--ns~s~------f---~-------l 98 (212)
T 1tue_A 45 LGALKSFLKGT--PK-KNCLVFCGPANTGKSYFGMSFIHFIQG---AV--ISFV--NSTSH------F---W-------L 98 (212)
T ss_dssp HHHHHHHHHTC--TT-CSEEEEESCGGGCHHHHHHHHHHHHTC---EE--CCCC--CSSSC------G---G-------G
T ss_pred HHHHHHHHhcC--Cc-ccEEEEECCCCCCHHHHHHHHHHHhCC---Ce--eeEE--eccch------h---h-------h
Confidence 44455554432 22 346899999999999999999998744 10 0111 00000 0 0 0
Q ss_pred HHHHHhCCCeEEEEeCCCCCChh-hHHHHHhhcccCcccccc------cCCceEEEEEeCCChH
Q psy1694 171 ISNVTACDRAIFIFDEVDKFPKG-LLDVIIPFIDHHAVYNQI------SFQNTIFLFLSNSGGT 227 (247)
Q Consensus 171 ~~~l~~~~~~vlilDEiek~~~~-~~~~Ll~~Le~~~~~~~~------~~~~~ifI~tSN~g~~ 227 (247)
..+ ....+++|||++...-. +...+..+|+...+.... ......+|+|||....
T Consensus 99 -~~l--~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 99 -EPL--TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp -GGG--TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT
T ss_pred -ccc--CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc
Confidence 011 12469999999843322 234556666654322222 2233589999998543
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=4.1e-07 Score=78.52 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694 89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN 168 (247)
Q Consensus 89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~ 168 (247)
.+..++..++.... .+...++|+||||||||++|.+||+.+-- .| .++.+.-.+
T Consensus 88 ~~~~~l~~~l~~~~--~~~n~~~l~GppgtGKt~~a~ala~~~~l---~G------~vn~~~~~f--------------- 141 (267)
T 1u0j_A 88 YAASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTVPF---YG------CVNWTNENF--------------- 141 (267)
T ss_dssp HHHHHHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHHSSC---EE------ECCTTCSSC---------------
T ss_pred HHHHHHHHHHhCCC--CCCcEEEEECCCCCCHHHHHHHHHhhhcc---cc------eeecccccc---------------
Confidence 45566677765542 23447999999999999999999886211 11 001110000
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc------cccCCceEEEEEeCC
Q psy1694 169 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNS 224 (247)
Q Consensus 169 ~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~------~~~~~~~ifI~tSN~ 224 (247)
.+..+....++++|-..+..+.+..++.+++-..... .....++.+|+|||.
T Consensus 142 ----~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 142 ----PFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp ----TTGGGSSCSEEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred ----ccccccccEEEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 1223334455555555666677788888887443221 124567789999998
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.23 E-value=6.4e-06 Score=71.99 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|.+...+.+.+ +.. . .++++||+|+|||++++.+++.+
T Consensus 14 ~~~gR~~el~~L~~-l~~-----~------~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA-----P------ITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS-----S------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC-----C------cEEEECCCCCCHHHHHHHHHHhc
Confidence 47888877776665 432 2 68899999999999999998874
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.21 E-value=7.2e-06 Score=89.43 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH
Q psy1694 87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL 166 (247)
Q Consensus 87 ~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l 166 (247)
.++....+...+.... ..++.||+|||||++++.+|+.+- .+++.++|++-.. +. .+
T Consensus 631 tdr~~~tl~~Al~~~~------~~~l~GpaGtGKTe~vk~LA~~lg--------~~~v~~nc~e~ld--------~~-~l 687 (2695)
T 4akg_A 631 LLIGFATLTDSLHQKY------GGCFFGPAGTGKTETVKAFGQNLG--------RVVVVFNCDDSFD--------YQ-VL 687 (2695)
T ss_dssp HHHHHHHHHHHHHTTC------EEEEECCTTSCHHHHHHHHHHTTT--------CCCEEEETTSSCC--------HH-HH
T ss_pred HHHHHHHHHHHHHhCC------CCcccCCCCCCcHHHHHHHHHHhC--------CcEEEEECCCCCC--------hh-Hh
Confidence 3444444444443332 568899999999999999999853 3789999876321 11 23
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCChhhHHHH-------HhhcccCccc---cc--c-cCCceEEEEEeCC
Q psy1694 167 TNWIISNVTACDRAIFIFDEVDKFPKGLLDVI-------IPFIDHHAVY---NQ--I-SFQNTIFLFLSNS 224 (247)
Q Consensus 167 ~~~~~~~l~~~~~~vlilDEiek~~~~~~~~L-------l~~Le~~~~~---~~--~-~~~~~ifI~tSN~ 224 (247)
.+.+.+.... +..++|||+++++++++..+ ...+.++... .+ + -..+..+++|+|-
T Consensus 688 g~~~~g~~~~--Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP 756 (2695)
T 4akg_A 688 SRLLVGITQI--GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP 756 (2695)
T ss_dssp HHHHHHHHHH--TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC
T ss_pred hHHHHHHHhc--CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC
Confidence 4445454433 47999999999999988887 4444443311 11 1 1245667888894
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.18 E-value=9.4e-06 Score=71.70 Aligned_cols=96 Identities=7% Similarity=-0.031 Sum_probs=65.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
+++|+||+|+||++.++.+++.+.+ .+.. ++..+ +++. ...+. .+.+.....--..++.++++||++
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~---~~~~-~~~~~---~~~~--~~~~~----~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAA---QGFE-EHHTF---SIDP--NTDWN----AIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH---HTCC-EEEEE---ECCT--TCCHH----HHHHHHHHHHHCCSCEEEEEECCS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHh---CCCC-eeEEE---EecC--CCCHH----HHHHHhcCcCCccCCeEEEEECCC
Confidence 7899999999999999999998765 3321 21111 1211 11122 222233222224567999999999
Q ss_pred C-CChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694 189 K-FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224 (247)
Q Consensus 189 k-~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~ 224 (247)
. ++.+.++.|++++++.+ .+++||++++.
T Consensus 87 ~kl~~~~~~aLl~~le~p~-------~~~~~il~~~~ 116 (343)
T 1jr3_D 87 NGPNAAINEQLLTLTGLLH-------DDLLLIVRGNK 116 (343)
T ss_dssp SCCCTTHHHHHHHHHTTCB-------TTEEEEEEESC
T ss_pred CCCChHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 9 99999999999999865 57788887754
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.17 E-value=1.1e-05 Score=70.28 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=34.6
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++|.+...+.+.+.+.. .. .++++||+|+|||++++.+++.
T Consensus 13 ~~~gR~~el~~L~~~l~~----~~------~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----YP------LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----CS------EEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhc----CC------eEEEECCCcCCHHHHHHHHHHH
Confidence 488998888888777654 13 6889999999999999999775
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.13 E-value=1.5e-05 Score=70.52 Aligned_cols=72 Identities=8% Similarity=0.148 Sum_probs=41.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
.++++||||+|||++|..++.. .+ ....|+.....+........ .. .....+...+.+.+ ++||||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G-----~~VlyIs~~~eE~v~~~~~~---le-~~l~~i~~~l~~~~--LLVIDsI~ 192 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LG-----GKDKYATVRFGEPLSGYNTD---FN-VFVDDIARAMLQHR--VIVIDSLK 192 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HH-----TTSCCEEEEBSCSSTTCBCC---HH-HHHHHHHHHHHHCS--EEEEECCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CC-----CCEEEEEecchhhhhhhhcC---HH-HHHHHHHHHHhhCC--EEEEeccc
Confidence 5689999999999999999876 22 12345555211110000011 11 12223334455544 99999999
Q ss_pred CCCh
Q psy1694 189 KFPK 192 (247)
Q Consensus 189 k~~~ 192 (247)
.+.+
T Consensus 193 aL~~ 196 (331)
T 2vhj_A 193 NVIG 196 (331)
T ss_dssp TTC-
T ss_pred cccc
Confidence 8854
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.13 E-value=3.5e-06 Score=91.77 Aligned_cols=102 Identities=12% Similarity=0.175 Sum_probs=61.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh------------
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA------------ 176 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~------------ 176 (247)
.++|+||||||||++|+.+...+ . .-+++.++++.... .. .+.+.+...+..
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~-----~--~~~~~~infsa~ts-----~~----~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS-----S--LYDVVGINFSKDTT-----TE----HILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-----S--SCEEEEEECCTTCC-----HH----HHHHHHHHHBCCEEETTTEEEEEB
T ss_pred eEEEECCCCCCHHHHHHHHHhcC-----C--CCceEEEEeecCCC-----HH----HHHHHHHHHhhhccccCCccccCC
Confidence 57999999999999995553321 1 22445555543211 11 122223222110
Q ss_pred --CCCeEEEEeCCCCCCh------hhHHHHHhhcccCccccc-----ccCCceEEEEEeCCCh
Q psy1694 177 --CDRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG 226 (247)
Q Consensus 177 --~~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g~ 226 (247)
....|+|+||++.... ..+..|.+.+|.+.+.+. +.+.+..||.++|..+
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence 1125999999876433 378888999987654332 2446788999999764
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=2.1e-05 Score=72.48 Aligned_cols=105 Identities=21% Similarity=0.326 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 161 (247)
Q Consensus 82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~ 161 (247)
+|..|++.+.+.+.. + ++ .+++.|++|||||+++..++..+.. .+.. . +.....+ ......
T Consensus 29 ~Q~~av~~~~~~i~~----~----~~-~~li~G~aGTGKT~ll~~~~~~l~~---~~~~-~-il~~a~T-----~~Aa~~ 89 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE----K----KH-HVTINGPAGTGATTLTKFIIEALIS---TGET-G-IILAAPT-----HAAKKI 89 (459)
T ss_dssp HHHHHHHHHHHHHHS----S----SC-EEEEECCTTSCHHHHHHHHHHHHHH---TTCC-C-EEEEESS-----HHHHHH
T ss_pred HHHHHHHHHHHHHhc----C----CC-EEEEEeCCCCCHHHHHHHHHHHHHh---cCCc-e-EEEecCc-----HHHHHH
Confidence 466666666555442 1 11 6799999999999999999999866 3321 1 2111111 000010
Q ss_pred HHHHHH---HHHHHHHH-------------------hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 162 YRLQLT---NWIISNVT-------------------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 162 ~~~~l~---~~~~~~l~-------------------~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
..+.+. ..+...+. .....++++||+..++...+..|++.+..+
T Consensus 90 l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~ 155 (459)
T 3upu_A 90 LSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPW 155 (459)
T ss_dssp HHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTT
T ss_pred HHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCC
Confidence 110000 00011111 113589999999999999999999988743
No 100
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.00 E-value=1.3e-05 Score=65.99 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-----------cc---------cCCC-CChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-----------RI---------HFPN-ENHVSLYRLQLT 167 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-----------~l---------~~~~-~~~v~~~~~~l~ 167 (247)
.+++++++|.|||++|-.+|-...+ .|.+.-++.+.-+ .+ .|.- ......-.....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4666789999999999999888777 6654433322111 11 0000 000000011111
Q ss_pred H---HHHHHHHhCCCeEEEEeCC------CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694 168 N---WIISNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 232 (247)
Q Consensus 168 ~---~~~~~l~~~~~~vlilDEi------ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~ 232 (247)
. .....+....+++|||||+ +.++.+ .++.+|..++ .+.-+|+|+|..++++-+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp-------~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARP-------GHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSC-------TTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCc-------CCCEEEEECCCCcHHHHHh
Confidence 1 2233344456799999999 445543 3556666654 6778999999998877654
No 101
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.92 E-value=0.00035 Score=60.49 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+|..+++.||||+|||++|+.+++.+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999998874
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.87 E-value=3.1e-05 Score=63.82 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
-++..+++|+||+|||+.|..++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3557889999999999999886544
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.73 E-value=0.0002 Score=79.15 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=65.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie 188 (247)
...+.||+|||||.+++.+|+.+-. +++.++|++-.. |. .+.+.+.+..+. +.-.+|||++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr--------~~~vfnC~~~~d--------~~-~~g~i~~G~~~~--GaW~cfDEfN 666 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGR--------FVLVFCCDEGFD--------LQ-AMSRIFVGLCQC--GAWGCFDEFN 666 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC--------CEEEEECSSCCC--------HH-HHHHHHHHHHHH--TCEEEEETTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCC--------eEEEEeCCCCCC--------HH-HHHHHHhhHhhc--CcEEEehhhh
Confidence 4478899999999999999999533 778888876321 22 234455554443 5677899999
Q ss_pred CCChhhHHHHHhhcc---------cCccc-c-c--cc-CCceEEEEEeCCC
Q psy1694 189 KFPKGLLDVIIPFID---------HHAVY-N-Q--IS-FQNTIFLFLSNSG 225 (247)
Q Consensus 189 k~~~~~~~~Ll~~Le---------~~~~~-~-~--~~-~~~~ifI~tSN~g 225 (247)
+++++++..+.+.++ ..++. . + +. ..++.+++|.|.|
T Consensus 667 rl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpg 717 (3245)
T 3vkg_A 667 RLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPG 717 (3245)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCC
Confidence 999998888776554 11111 1 2 11 1356788888964
No 104
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.71 E-value=0.00019 Score=68.20 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=51.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH---HHHHHHHH----------
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT---NWIISNVT---------- 175 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~---~~~~~~l~---------- 175 (247)
.+++.|+||||||+++..++..+.. .+. + |.+.+++ ........+.+. ..+...+.
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~---~g~--~-Vl~~ApT-----~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES---LGL--E-VGLCAPT-----GKAARRLGEVTGRTASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH---TTC--C-EEEEESS-----HHHHHHHHHHHTSCEEEHHHHTTEETTEESCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh---cCC--e-EEEecCc-----HHHHHHhHhhhcccHHHHHHHHcCCcchhhhhh
Confidence 6788999999999999999888655 331 1 2221111 011110110000 00111110
Q ss_pred --hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 176 --ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 176 --~~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
..+.+++|+||+..++...+..|++.+..+
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 113589999999999999999999888754
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.71 E-value=2.8e-05 Score=63.04 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
+..+|++||++.+++++++.|.++.++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence 358999999999988888888877775
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=0.00029 Score=56.71 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999875
No 107
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=0.00099 Score=61.15 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|.++++.|++|+||||++..||..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999988755
No 108
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.67 E-value=0.0006 Score=57.20 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le 203 (247)
..++||+||++.++......++..+.
T Consensus 192 ~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 192 RFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp TCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred cCCEEEEECCccCCChHHHHHHHhcc
Confidence 46899999999999877777766654
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.65 E-value=9.5e-05 Score=62.02 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=49.2
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------ccccCCCCC-hHHHHHHHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------SRIHFPNEN-HVSLYRLQLTNWIISNVTA 176 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~~l~~~~~~-~v~~~~~~l~~~~~~~l~~ 176 (247)
...++++||+|+|||+++..++..+.. .+...-++.... +.+....+. .+... ..+...+......
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~-~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESA-PEILNYIMSNSFN 87 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESST-HHHHHHHHSTTSC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccCCH-HHHHHHHHHHhhC
Confidence 346888999999999999888877654 332211111011 111000000 01101 1112222221222
Q ss_pred CCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694 177 CDRAIFIFDEVDKFPKGLLDVIIPFID 203 (247)
Q Consensus 177 ~~~~vlilDEiek~~~~~~~~Ll~~Le 203 (247)
....+|++||++.+++++...+..+-+
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHh
Confidence 346899999999999887666655444
No 110
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.57 E-value=0.0015 Score=60.06 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 85 LAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 85 ~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..++.+.+.+...+..... ..+|.++++.|++|+||||++..||..+..
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3444555555554432110 135788999999999999999999998755
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.56 E-value=0.00023 Score=75.93 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc--------------cccCCCCChHHHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS--------------RIHFPNENHVSLYRLQLTNWII 171 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~--------------~l~~~~~~~v~~~~~~l~~~~~ 171 (247)
++.+++|+||||||||++|..++..... .|....|+...-+ .+....+.... +....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E----~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH----HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH----HHHHHHH
Confidence 4557999999999999999999887554 4432223222100 01111111111 2223344
Q ss_pred HHHHhCCCeEEEEeCCC-CCC
Q psy1694 172 SNVTACDRAIFIFDEVD-KFP 191 (247)
Q Consensus 172 ~~l~~~~~~vlilDEie-k~~ 191 (247)
..++....++||+||++ ..|
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCC
T ss_pred HHHhcCCCCEEEEcChhHhcc
Confidence 44556667999999996 444
No 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.54 E-value=0.00076 Score=64.43 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
+..++|+||++.++...+..|++.+..
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPD 288 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCC
Confidence 347999999999998888899888754
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.48 E-value=0.00085 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+|..+++.|+||+|||++|+.|++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567789999999999999999999874
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.47 E-value=0.00013 Score=80.52 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=59.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH-----------hC
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----------AC 177 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-----------~~ 177 (247)
.++|+||||||||.+++.....+ ...+++.++++.... .. .+.+.+...+. ..
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l-------~~~~~~~infS~~Tt-----a~----~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAF-------PDFEVVSLNFSSATT-----PE----LLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGC-------TTEEEEEECCCTTCC-----HH----HHHHHHHHHEEEEECTTSCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhC-------CCCceEEEEeeCCCC-----HH----HHHHHHhhcceEEeccCCCcccCC
Confidence 35999999999997764432221 122455666544211 11 11222221111 11
Q ss_pred ----CCeEEEEeCCCCCChh------hHHHHHhhcccCccccc-----ccCCceEEEEEeCCC
Q psy1694 178 ----DRAIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG 225 (247)
Q Consensus 178 ----~~~vlilDEiek~~~~------~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g 225 (247)
...|+|+||++.-.++ .+..|.++||.+.+.+. +...+..||.++|.+
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence 1258889999876554 78889999998765442 245677899999864
No 115
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.36 E-value=0.0077 Score=53.12 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++.+.||+|+||||+++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999988644
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.34 E-value=0.00057 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.||+|+|||++++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999876543
No 117
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.31 E-value=0.0015 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+++.|++|||||++|-.+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 56899999999999999999999776
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.30 E-value=0.00014 Score=57.50 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
|..+++.|+||+|||++|+.|++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999884
No 119
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.27 E-value=0.0094 Score=52.06 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++++.||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 35668999999999999999999988654
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.26 E-value=0.0091 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++.++.+.||+|+|||+++..+|..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466889999999999999999998864
No 121
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.0002 Score=58.04 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.+|+.++|.|+||+|||++|+.|++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577789999999999999999999874
No 122
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00022 Score=56.92 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..+++.|+||+|||++++.+++.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356788999999999999999999874
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.22 E-value=0.0014 Score=53.24 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=19.7
Q ss_pred EEEEeecCCChHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~ 129 (247)
.+.+.||+|+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 124
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.00014 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..++|.|++|+|||++|+.|++.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 366789999999999999999999874
No 125
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.21 E-value=0.0019 Score=60.66 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+|.+..++.+.+.+.... ...+.++.++|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 699988888888875321 12344789999999999999999986
No 126
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00031 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=23.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..++|.|+||+||||+++.|++.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999998643
No 127
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.18 E-value=0.0039 Score=50.11 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=28.5
Q ss_pred CeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694 179 RAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR 237 (247)
Q Consensus 179 ~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~ 237 (247)
..++|+||++.+.. +....+..++..-+ .+.-+++.|-+-++.+.+.+.+++
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~-------~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLP-------KNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSC-------TTCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCC-------ccceEEEEEeeCCHHHHHHHHHHc
Confidence 38999999997654 33444444333211 123345555555666666655544
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00027 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+.|.|+||+|||++|+.|++.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999874
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.15 E-value=0.0017 Score=57.75 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||||+|||++|..++..+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999877554
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.15 E-value=0.0019 Score=57.65 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.|+||+|||++|..++..+..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999887654
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00027 Score=56.27 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999885
No 132
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.13 E-value=0.00063 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|+.++|.||||+||||+|+.|++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999999874
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.13 E-value=0.00068 Score=71.41 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..++++||||||||++|..++.+-.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhh
Confidence 334589999999999999999987643
No 134
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.13 E-value=0.0038 Score=55.80 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++.||||+|||+++..++..+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999887644
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.12 E-value=0.00034 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.|++|+|||++|+.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999874
No 136
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.00029 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
|..+++.|+||+|||++|+.|++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh
Confidence 457899999999999999999883
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.0032 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||||+|||+++..++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999888776543
No 138
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.07 E-value=0.0041 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||||+|||++|..++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Confidence 5788999999999999998887544
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.06 E-value=0.00035 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.|++|+|||++|+.|++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999998874
No 140
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.05 E-value=0.015 Score=51.13 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCChHH---HHHHHHHHHHHhhhccc----------CCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 71 VLEEQLKQHVHGQEL---AISHICGALKNHFQNRY----------HNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 71 ~L~~~L~~~l~Gq~~---a~~~l~~~l~~~~~~~~----------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+-+.+++++.|+.. ..+.+.+.+...+.... ...+|.++.+.|++|+|||+++..||..+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 56 KVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555556666422 33344444444332211 1235668999999999999999999988654
No 141
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.04 E-value=0.0033 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.|..+++.||+|+|||++|..+|+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45578899999999999999999984
No 142
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.04 E-value=0.00038 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.|++|+||||+++.|++.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999874
No 143
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00042 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+..+.|.|+||+|||++|+.|++.+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999999853
No 144
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00038 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|++|+|||++|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999884
No 145
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.0004 Score=57.09 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.++|.|+||+||||+|+.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999984
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.00035 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+.|.||+|+|||++++.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998874
No 147
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.00042 Score=56.21 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+.|.|++|+|||++++.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999885
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00048 Score=55.21 Aligned_cols=26 Identities=35% Similarity=0.714 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|+|++|+|||++++.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45578999999999999999999873
No 149
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.01 E-value=0.00056 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.|..+.|.|++|+|||++|+.+++.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998874
No 150
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00048 Score=55.91 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|..+.|.|++|+|||++++.|++.+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5668899999999999999999998643
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.00 E-value=0.00046 Score=55.81 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++..+.|.|++|+|||++|+.|++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4466779999999999999999998873
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00042 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..++++|+||+|||++++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999874
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.0026 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||+|+||||+.++++..+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 688999999999999999988753
No 154
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.0077 Score=49.95 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.7
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.||+|+|||++...+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 6889999999999766544
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.0013 Score=57.09 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 87 ~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++.|.+.+..+... . +.+|..+.+.|++|+|||++|+.|++.+-.
T Consensus 13 ~~~l~~~i~~~~~~-~-~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 13 IEFLDKYIPEWFET-G-NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHHHTT-T-CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc-c-CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34455555444221 1 457788999999999999999999988643
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.98 E-value=0.0026 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.|.||+|+|||++++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6889999999999999999876
No 157
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.98 E-value=0.00046 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..++|.|+||+|||++++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56678999999999999999999885
No 158
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00052 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+|..+.|.|++|+|||++++.|++.+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999853
No 159
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.97 E-value=0.00055 Score=55.55 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=24.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.+.||+|+|||++++.|+..+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557889999999999999999998753
No 160
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.95 E-value=0.00055 Score=56.96 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++..++|.|++|+|||++|+.|++.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999999984
No 161
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.94 E-value=0.0014 Score=53.22 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=25.3
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.++..+.+.|++|+|||++++.|+..+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346678999999999999999999988643
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.00059 Score=56.85 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+|.++++.||||+||+|.|+.|++.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4577789999999999999999999983
No 163
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.0005 Score=56.83 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..++|.|++|+|||++|+.|++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55678999999999999999999874
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00061 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
|..+.+.|+||+|||++|+.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478999999999999999999874
No 165
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.91 E-value=0.015 Score=53.21 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++++.|++|+|||+++..||..+..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35668999999999999999999988654
No 166
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.88 E-value=0.00066 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++|.|+||+|||++|+.|++.+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998643
No 167
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.87 E-value=0.0075 Score=48.35 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.3
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 40 ~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 4688999999999885443
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.85 E-value=0.0074 Score=53.84 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=47.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCC-----------CChHHHHHHHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPN-----------ENHVSLYRLQLTNWIISNVTA 176 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~-----------~~~v~~~~~~l~~~~~~~l~~ 176 (247)
.+++.||+|+||||+.++++..+.. .. ....+... -.++..+. ... ..|.+ .+...+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~---~~-~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-~~~~~----~La~aL~- 194 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN---TK-YHHILTIEDPIEFVHESKKCLVNQREVHRDT-LGFSE----ALRSALR- 194 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH---HC-CCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-SCHHH----HHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC---CC-CcEEEEccCcHHhhhhccccceeeeeecccc-CCHHH----HHHHHhh-
Confidence 5889999999999999999887644 10 01111110 00000000 000 11322 3333333
Q ss_pred CCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
....++++||+- ++.....+++..+.+
T Consensus 195 ~~PdvillDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 195 EDPDIILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHHHTT
T ss_pred hCcCEEecCCCC--CHHHHHHHHHHHhcC
Confidence 345899999996 567777777766553
No 169
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.85 E-value=0.013 Score=54.03 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|..+++.|.||+|||++++.+++.+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999998653
No 170
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.84 E-value=0.00061 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|+||+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999874
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.84 E-value=0.0019 Score=56.94 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=25.8
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++|.++.+.||+|+||||+++.|+..+-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999999988753
No 172
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.83 E-value=0.00072 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++.|.|++|+|||++|+.||+.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999984
No 173
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00068 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|+||+|||++|+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999999999884
No 174
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.80 E-value=0.0012 Score=52.60 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=25.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++..+.|.|++|+|||++++.+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35567899999999999999999998754
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00069 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=19.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.+.|+||+|||++|+.| +.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 6789999999999999999 54
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.80 E-value=0.00065 Score=54.72 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.|++|+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999875
No 177
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.79 E-value=0.00087 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+.+|..+.+.|++|+|||++++.|++.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 346778999999999999999999875
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00087 Score=54.32 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.+.||+|+|||++++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34478899999999999999998874
No 179
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.78 E-value=0.00083 Score=56.61 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|+.+.+.||+|+|||++++.|++.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999875
No 180
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.78 E-value=0.063 Score=46.46 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.8
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
|.++.+.|++|+|||+++..+|..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 667888999999999999999988654
No 181
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.77 E-value=0.0011 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.+.|++|+|||++++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34568899999999999999998874
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.76 E-value=0.00086 Score=55.12 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+++.++|.|+||+|||++|+.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999999999985
No 183
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.76 E-value=0.012 Score=47.93 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred EEEEeecCCChHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTD 125 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~ 125 (247)
.+++.+|+|+|||.++-
T Consensus 53 ~~lv~~pTGsGKT~~~~ 69 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFS 69 (224)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCcHHHHHH
Confidence 47889999999998843
No 184
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.00088 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+.+.||+|+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999775
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.75 E-value=0.024 Score=50.24 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.+.|+||+|||+++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5567899999999999999999988654
No 186
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.74 E-value=0.0009 Score=54.58 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999998874
No 187
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.74 E-value=0.0049 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
|..+++.||+|+|||++|+.||+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999985
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.73 E-value=0.071 Score=48.72 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++++.|++|+|||+++..||..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778899999999999999999988755
No 189
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.0011 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..+.|.||+|+||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 190
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.72 E-value=0.0045 Score=54.44 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.0
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..+++.||||+|||++|..||+.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3467889999999999999999875
No 191
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.71 E-value=0.00087 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|+||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999998873
No 192
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.001 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 193
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.70 E-value=0.021 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.+|+|+|||+++-..+...
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHH
Confidence 57889999999999876654443
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.70 E-value=0.0011 Score=55.59 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+.+.||+|+||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999764
No 195
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.00086 Score=54.54 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.||||+|||++++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45578899999999999999998875
No 196
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.69 E-value=0.085 Score=49.18 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|.++.+.|++|+|||+++..||..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45778999999999999999999988654
No 197
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.00097 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|++|+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 198
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0011 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+++.|+||+|||++|+.|++.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999999854
No 199
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.65 E-value=0.0011 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++|.||||+||+|.|+.|++.+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999983
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.65 E-value=0.0012 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+|..+.+.|++|+|||++|+.|++.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999974
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.64 E-value=0.0012 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47889999999999999999985
No 202
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.63 E-value=0.0027 Score=51.77 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+.+.||+|+||||+++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455788999999999999999998865
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.62 E-value=0.0013 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.|.|++|+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999863
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.62 E-value=0.0013 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.||+|+|||++++.|++.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999998874
No 205
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.61 E-value=0.0065 Score=61.34 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++|.+..++.+.+.+... ...+.++.++|+.|+|||++|+.+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3789988888887776532 123447889999999999999888554
No 206
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.60 E-value=0.0044 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+++.||+|+|||++|..||+.+-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 455788999999999999999999853
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.59 E-value=0.0015 Score=51.67 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+.|.|++|+|||++++.+++.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455788999999999999999999864
No 208
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.58 E-value=0.011 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.+|+|+|||.++-..+...
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHh
Confidence 46889999999999877665443
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0015 Score=52.09 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.||+|+|||++++.|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33467889999999999999998864
No 210
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0059 Score=53.19 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhccc-----C--CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 84 ELAISHICGALKNHFQNRY-----H--NTKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~-----~--~~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+.+.+.+.+.+...+.... + ..+|-++.+.||+|+||||+++.|+..+..
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3455555566655443211 1 235667899999999999999999988644
No 211
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.57 E-value=0.0013 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||||+|||++|+.||+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47889999999999999999884
No 212
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.56 E-value=0.011 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++++..+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997764
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0018 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+.+.|++|+|||++++.|++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455788999999999999999999875
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.53 E-value=0.0016 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.|.|++|+||||+++.|++.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999863
No 215
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.0022 Score=52.21 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=47.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee----------cccccCC-CCChHHHHHHHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------NSRIHFP-NENHVSLYRLQLTNWIISNVT 175 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~----------~~~l~~~-~~~~v~~~~~~l~~~~~~~l~ 175 (247)
....+++||.|+|||+.+-.+++.+.. .+...-++... .+.+... ....+.... .+...+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~-----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSR-----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTTSCEEECEEESSST-----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHH-----HHHHHHh
Confidence 446788999999999999888877544 33211111100 0111000 000000000 1111111
Q ss_pred hCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
.+..+|++||++.++++..+.+..+.+.
T Consensus 80 -~~~dvViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 80 -EDTEVIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp -TTCSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred -ccCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 2468999999999988777766655444
No 216
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.51 E-value=0.0016 Score=52.37 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.|.||+|+|||++++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34468899999999999999998875
No 217
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.50 E-value=0.0017 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 218
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.49 E-value=0.016 Score=47.96 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.4
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 69 ~~li~apTGsGKT~~~~l~ 87 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAIS 87 (237)
T ss_dssp CEEECCCSSHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 4688999999999875444
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.0037 Score=55.89 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+...+.+.+.+...+.. ++...++|.|++|+|||+++++|++.+.
T Consensus 5 ~~L~~~il~~l~~~i~~----g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED----NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTT----CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444455555443322 2233588899999999999999999863
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.48 E-value=0.0084 Score=64.14 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+-+++++||||||||++|..++.....
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999877555
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.47 E-value=0.051 Score=50.59 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++-++.|.|++|+||||+++.|+..+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 35668999999999999999999987643
No 222
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.47 E-value=0.0096 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.+|+|+|||.++...+..+.
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468899999999999988876643
No 223
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.47 E-value=0.0025 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||||||||++.-.+..++..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4688999999999877666555554
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.47 E-value=0.0059 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.||||+|||++|..++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 68899999999999999998774
No 225
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.44 E-value=0.002 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+|..+.|.|++|+|||++++.|++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 566889999999999999999987
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.42 E-value=0.0021 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..+.|.||+|+||||+++.|+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346788999999999999999887
No 227
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.41 E-value=0.0019 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.41 E-value=0.0024 Score=51.81 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.+.||+|+||||+++.|+..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578899999999999999998874
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0087 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|-++.+.||+|+||||+++.|+..+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 35668999999999999999999988643
No 230
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.40 E-value=0.023 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=15.3
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 82 ~~lv~a~TGsGKT~~~~~~ 100 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALP 100 (249)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEEcCCCCCchhHhHHH
Confidence 4788999999999876433
No 231
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.40 E-value=0.0026 Score=58.49 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 179 RAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 179 ~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
..++|+||+..++++.+..++..+..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 68999999999999999888877654
No 232
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.39 E-value=0.023 Score=46.22 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.3
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 43 ~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp CEEEECCSSHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 4688999999999875444
No 233
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.37 E-value=0.0023 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.1
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+.+|..+.+.|++|+|||++|+.|++
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999984
No 234
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.32 E-value=0.0027 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.|++|+|||++++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999874
No 235
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.30 E-value=0.0041 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+||||+.++++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 688999999999999999998754
No 236
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.30 E-value=0.029 Score=46.30 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.3
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 68 ~~l~~a~TGsGKT~~~~l~ 86 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIP 86 (245)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 4688999999999876443
No 237
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0021 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred eEEEEeecCCChHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~ 129 (247)
..+.|.|++|+||||+++.+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999977
No 238
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.24 E-value=0.0026 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.8
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.|.||+|+||||+++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5788999999999999999874
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0034 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++..+.|.|++|+||||+++.|++.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356678999999999999999999985
No 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0035 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.|++|+|||++++.|++.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999974
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.23 E-value=0.0026 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
|..+++.|+||+|||++|+.|++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999885
No 242
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.21 E-value=0.0085 Score=52.09 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..++..+.+.||+|+||||+++.|+..+-
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34667889999999999999999988753
No 243
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.21 E-value=0.061 Score=54.98 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=20.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+|..++++||+|+|||.+|-..+-.
T Consensus 623 ~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 623 LAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp SCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred CcCcEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999998655444
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0033 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=23.9
Q ss_pred CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 104 NTKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 104 ~~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++..+.+.|++|+|||++++.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4566678999999999999999999864
No 245
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.19 E-value=0.0027 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+.+.|++|+|||++++.+++.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35578999999999999999999874
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.19 E-value=0.015 Score=51.31 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
...+.+.||||+|||++|..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3368899999999999999998763
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.18 E-value=0.0031 Score=51.05 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.+.|++|+|||++++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45578899999999999999998763
No 248
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.18 E-value=0.018 Score=48.97 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=18.9
Q ss_pred EEEeecCCChHHHHHHHHHHHhh
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++.+|+|+|||.++-.++....
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHHH
Confidence 36799999999999988776644
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.18 E-value=0.046 Score=47.23 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++.++.+.|++|+|||+++..+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567888899999999999999988654
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.17 E-value=0.0033 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..+.|.||+|+|||++++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999653
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.16 E-value=0.0026 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+||||++++|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999998875
No 252
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.15 E-value=0.025 Score=48.79 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=28.5
Q ss_pred eEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694 180 AIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK 238 (247)
Q Consensus 180 ~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~ 238 (247)
.+|||||+|.|.. .....+..++..-+ ++.-+++.|-+-++.+.+.+..++.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP-------RNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSC-------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCC-------CCCEEEEEeccCCHHHHHHHHHHCC
Confidence 8999999998753 33333333333211 2334555555555566655544443
No 253
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.023 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+++.|++|+|||++...+....+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999976543
No 254
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.14 E-value=0.032 Score=46.12 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.4
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 68 ~~l~~apTGsGKT~~~~l~ 86 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLP 86 (242)
T ss_dssp CEEEEECTTSCHHHHHHHH
T ss_pred CEEEECCCcCHHHHHHHHH
Confidence 4688999999999886543
No 255
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.13 E-value=0.026 Score=49.29 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.4
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
.+++.+|+|+|||.++-..+
T Consensus 46 ~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 46 NMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 57889999999999876543
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0035 Score=50.52 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEeecCCChHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~ 129 (247)
.+.+.|++|+|||++++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478899999999999999988
No 257
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.027 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.2
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.|.||||+|||+++..++-.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 6889999999999999977644
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.07 E-value=0.018 Score=60.75 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=45.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc----------------cccCCCCChHHHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS----------------RIHFPNENHVSLYRLQLTNWII 171 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~----------------~l~~~~~~~v~~~~~~l~~~~~ 171 (247)
-.+++.||||+|||++|..++..+.. .+. +...+... .+....+.... ++...+.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~---~g~--~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~le----ei~~~l~ 803 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQR---EGK--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICD 803 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTC--CEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH----HHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHH---cCC--CeEEEeccchHHHHHHHHcCCChhheEEecCCcHH----HHHHHHH
Confidence 36899999999999999999888654 321 22222211 11111111212 2233343
Q ss_pred HHHHhCCCeEEEEeCCCCCCh
Q psy1694 172 SNVTACDRAIFIFDEVDKFPK 192 (247)
Q Consensus 172 ~~l~~~~~~vlilDEiek~~~ 192 (247)
..+.....++||+|+++.+.+
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCC
T ss_pred HHHHccCCCEEEEechhhhcc
Confidence 444456678999999999873
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0024 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.|.|++|+||||+++.|++.+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999864
No 260
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.00 E-value=0.0051 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+.|.||+|+|||++++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456788999999999999999876
No 261
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.0045 Score=51.54 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+|..+.+.|++|+|||++++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46678999999999999999999985
No 262
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.99 E-value=0.027 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||||+|||++|..||+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 57889999999999999999985
No 263
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.98 E-value=0.0052 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+-+.||+|+||||+++.|+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999999998874
No 264
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.97 E-value=0.032 Score=46.25 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=46.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH------------HHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI------------ISNV 174 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~------------~~~l 174 (247)
....+++||.|+|||+.+-.++..... .+.. |.+..+..+.... ...+...+ .+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~k---Vli~k~~~d~R~g------e~~i~s~~g~~~~a~~~~~~~~~~ 95 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF---AKQH---AIVFKPCIDNRYS------EEDVVSHNGLKVKAVPVSASKDIF 95 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCC---EEEEECC-----------------------CCEEECSSGGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCE---EEEEEeccCCcch------HHHHHhhcCCeeEEeecCCHHHHH
Confidence 345678999999999999888777544 3321 2222111110000 00000000 0111
Q ss_pred HhC--CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694 175 TAC--DRAIFIFDEVDKFPKGLLDVIIPFIDH 204 (247)
Q Consensus 175 ~~~--~~~vlilDEiek~~~~~~~~Ll~~Le~ 204 (247)
... +..+|++||++-++++..+.+..+.+.
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHhhC
Confidence 111 368999999999998877666554443
No 265
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.96 E-value=0.003 Score=54.71 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=20.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+.+.||+|+||||+|+.+++.+-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556789999999999999999998753
No 266
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.94 E-value=0.014 Score=51.10 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++..+.+.||+|+||||+++.|+..+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4666788999999999999999988864
No 267
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.94 E-value=0.044 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=17.2
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|+|+|||.++-..+-.
T Consensus 47 ~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CEEEECSSCSSHHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999887655444
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.93 E-value=0.26 Score=44.87 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|.++.+.|++|+|||+++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5667888999999999999999998654
No 269
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.93 E-value=0.047 Score=48.07 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.3
Q ss_pred EEEEeecCCChHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~ 126 (247)
.+++.+|+|+|||.++-.
T Consensus 66 ~~lv~apTGsGKT~~~~~ 83 (412)
T 3fht_A 66 NLIAQSQSGTGKTAAFVL 83 (412)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred eEEEECCCCchHHHHHHH
Confidence 578899999999998644
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.88 E-value=0.0035 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+|..+++.|+||+|||++|+.+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4667899999999999999999765
No 271
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.84 E-value=0.039 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=20.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||||+|||+++-.++.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999998777666443
No 272
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.80 E-value=0.051 Score=49.88 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..+++||+|+|||.++-.++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHH
Confidence 468899999999999977766644
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.79 E-value=0.011 Score=53.07 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+.+.||+|+|||+++++++..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34478899999999999999998863
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.79 E-value=0.0054 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+|||++.+.|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999998764
No 275
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.78 E-value=0.038 Score=51.18 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.3
Q ss_pred eEEEEeecCCChHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~l 127 (247)
..+++.+|+|+|||.++-..
T Consensus 159 ~~~ll~apTGsGKT~~~~~~ 178 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALT 178 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHH
Confidence 36789999999999986543
No 276
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0065 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+.++|++|+|||++++.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999987
No 277
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.76 E-value=0.0076 Score=56.55 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
.++|.+..++.+.+.+... ...+.++.++||+|+|||++|+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4889888888887766532 11234788999999999999998864
No 278
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.73 E-value=0.052 Score=47.50 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.2
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 60 ~~lv~~~TGsGKT~~~~~~ 78 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIA 78 (394)
T ss_dssp CEEECCCSSHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 3688999999999885443
No 279
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.71 E-value=0.012 Score=55.15 Aligned_cols=62 Identities=8% Similarity=0.053 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHhh-----cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 65 QSSNVRVLEEQLKQH-----VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 65 ~~~~~~~L~~~L~~~-----l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
....-..+++.|++. .+-...+.+.+++..... .+++.++.|.|.+|+|||++|++||+.|.
T Consensus 354 ~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~------~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 354 LNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPR------PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp BCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCG------GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccc------cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 344456677777663 334444444444322111 23556899999999999999999999974
No 280
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.70 E-value=0.036 Score=45.20 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.5
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++-..
T Consensus 59 ~~l~~apTGsGKT~~~~l~ 77 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMP 77 (228)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 4688999999999876543
No 281
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.65 E-value=0.044 Score=44.93 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.7
Q ss_pred EEEEeecCCChHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~ 126 (247)
.+++.+|+|+|||.++-.
T Consensus 63 ~~l~~a~TGsGKT~~~~l 80 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFST 80 (230)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHH
Confidence 468899999999987543
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.64 E-value=0.073 Score=46.26 Aligned_cols=25 Identities=12% Similarity=0.099 Sum_probs=22.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.|+||+|||++|..++.+...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999877554
No 283
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.64 E-value=0.0086 Score=52.20 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+|-++.+.||+|+||||+++.|+..+-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4667899999999999999999988644
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.63 E-value=0.0071 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.8
Q ss_pred CCeEEEEeecCCChHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~ 126 (247)
++-.+.+.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344688999999999999993
No 285
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.61 E-value=0.0079 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=23.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.|.++++.|.||+|||++|+.|++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688999999999999999999986
No 286
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.60 E-value=0.009 Score=49.33 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.|.|++|+|||+.++.|++.+-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999999754
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.56 E-value=0.0082 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
-.+.|.||+|+|||+++++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999999999998875
No 288
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.55 E-value=0.24 Score=43.39 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=17.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|+|+|||.++-..+-.
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHH
Confidence 3688999999999877655443
No 289
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.53 E-value=0.0082 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+.+.||+|+|||++|+.||+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 368899999999999999999985
No 290
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.49 E-value=0.056 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred EEEEeecCCChHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDF 126 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~ 126 (247)
.+++.+|||+|||.++-.
T Consensus 133 ~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 133 NLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp EEEEECCSSSSHHHHHHH
T ss_pred cEEEEcCCCCchhHHHHH
Confidence 689999999999988543
No 291
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.077 Score=44.60 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.5
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
.+++.+|+|+|||.++...
T Consensus 93 ~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCEECCCTTSCHHHHHHHH
T ss_pred cEEEEccCCCCchHHHHHH
Confidence 4688999999999986544
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.48 E-value=0.0079 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+|||++++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57889999999999999998864
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.48 E-value=0.0055 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=15.7
Q ss_pred CeEEEEeecCCChHHHHHHHHH-HH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIV-SS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la-~~ 130 (247)
+..+.|.||+|+|||++++.|+ ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467889999999999999998 65
No 294
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.45 E-value=0.015 Score=54.91 Aligned_cols=28 Identities=18% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.|.|++|+||||++++|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3447889999999999999999998753
No 295
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.43 E-value=0.01 Score=48.44 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=22.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++.+.|++|+|||++++.||+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 378899999999999999999985
No 296
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.42 E-value=0.07 Score=45.49 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.3
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
.+++.+|+|+|||.++-..+
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~ 52 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPI 52 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHH
Confidence 46889999999998876553
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.41 E-value=0.0089 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
++|.||+|+||+++++.|.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999998765
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.39 E-value=0.0036 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
.++..+.|.|++|+||||+++.|++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356678999999999999999998875
No 299
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.36 E-value=0.012 Score=49.51 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.|.|++|+|||+.++.+++.+-.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999999998754
No 300
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.36 E-value=0.013 Score=48.93 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++..+.|.|++|+|||++++.+++.+-
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3566789999999999999999999863
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.35 E-value=0.011 Score=48.09 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 302
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.34 E-value=0.0088 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.0
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..++|.||||+|||++|..+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999997763
No 303
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.33 E-value=0.013 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||.|+|||++.+.|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999999987
No 304
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.32 E-value=0.1 Score=45.95 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+...+.+.||||+|||++.+.++..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4447889999999999999999887643
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.31 E-value=0.015 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=22.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.++.+.|++|+|||+++..++..+-.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 36889999999999999999988654
No 306
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.31 E-value=0.0099 Score=49.68 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.|.|++|+|||+.++.|++.+-.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5567899999999999999999998744
No 307
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.30 E-value=0.099 Score=46.08 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=15.9
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
.+++.+|+|+|||+++-..+
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHH
T ss_pred CEEEECCCCCcccHHHHHHH
Confidence 36889999999999865443
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.01 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.+.||+|+|||++++.++..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6888999999999999999854
No 309
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.28 E-value=0.014 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
++..+.|.|++|+|||+.++.+++.+-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455788999999999999999999863
No 310
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.26 E-value=0.013 Score=56.12 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|..++|.|.+|+|||++|+.|++.+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999999754
No 311
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.17 E-value=0.03 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.1
Q ss_pred EEEEeecCCChHHHHH-HHHHHH
Q psy1694 109 AISLHGLPGTGKNYVT-DFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A-~~la~~ 130 (247)
++++.||+|+|||.++ ..+.+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999987 444433
No 312
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.14 E-value=0.014 Score=55.38 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+|..+.|.|.+|+|||++|+.|++.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 36678999999999999999999998763
No 313
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.08 E-value=0.015 Score=48.15 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=21.5
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..+.+.||+|+|||++.+.|+..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3367889999999999999998874
No 314
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.07 E-value=0.12 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=19.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.|..+++.||+|+|||.++-..+-.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 4456799999999999998665444
No 315
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.06 E-value=0.017 Score=47.74 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.8
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..+.|.|++|+|||+.++.+++.+-.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999755
No 316
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.06 E-value=0.018 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++.++.+.|++|+|||++|+.||+.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999985
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.98 E-value=0.015 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||+|+|||++.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 467899999999999999998863
No 318
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.97 E-value=0.14 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.1
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|+|+|||.++-..+-.
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~~ 97 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVLQ 97 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHHH
Confidence 4688999999999887655433
No 319
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.92 E-value=0.14 Score=46.49 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
..++.+|+|+|||.++-.++..+
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 36889999999999997776653
No 320
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.87 E-value=0.11 Score=51.01 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.0
Q ss_pred EEEEeecCCChHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFI 127 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~l 127 (247)
++++.||+|+|||++...+
T Consensus 111 ~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6789999999999965555
No 321
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.86 E-value=0.19 Score=50.24 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=19.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||.|+|||++.+.++-..
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999996543
No 322
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.72 E-value=0.036 Score=52.21 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=24.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.|.|++|+|||++|+.|++.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4567899999999999999999998654
No 323
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.69 E-value=0.035 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||||||||+++..+...+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999998888777653
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.63 E-value=0.024 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+|||+++++|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 67899999999999999998875
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.63 E-value=0.02 Score=45.58 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.|++|+|||++++.|+..+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999888654
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.61 E-value=0.025 Score=44.50 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
...|+||+|+|||++.++|.-.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5788999999999999999776654
No 327
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.56 E-value=0.073 Score=43.41 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=20.7
Q ss_pred EEEEeecCCChHH-HHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKN-YVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt-~~A~~la~~l~~ 133 (247)
..+++||.|+||| .+.+++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4778999999999 888998777543
No 328
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.54 E-value=0.027 Score=48.11 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=22.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.||||+|||++++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999988654
No 329
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.041 Score=43.22 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999998654
No 330
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.46 E-value=0.028 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.||+|+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999987643
No 331
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.44 E-value=0.05 Score=49.46 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+.+.+.+.+........ .+.|.||+|+|||++.++|+..
T Consensus 52 ~~~~~~i~~~L~~~~~~~~------~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 52 QLTNSAISDALKEIDSSVL------NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHHHHHCCE------EEEEEECTTSSHHHHHHHHHTC
T ss_pred cccchhhhhhhhhcccCCe------EEEEECCCCCcHHHHHHHHhCC
Confidence 3445566666665443333 7889999999999999999764
No 332
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.37 E-value=0.027 Score=45.31 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEeecCCChHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~ 129 (247)
..++|.|++|+|||++|..+.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999998855
No 333
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.35 E-value=0.04 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..+.+.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688899999999999999988753
No 334
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.32 E-value=0.03 Score=44.73 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+.+.|++|+|||++.+.+...+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccc
Confidence 5788999999999999999887543
No 335
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.25 E-value=0.085 Score=42.67 Aligned_cols=27 Identities=19% Similarity=0.440 Sum_probs=22.7
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
+..+.+.|++|+|||+++..++...+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 346788899999999999999888654
No 336
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.20 E-value=0.24 Score=49.50 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||.|+|||++.+.++...
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHH
Confidence 58899999999999999997653
No 337
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.16 E-value=0.023 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999997653
No 338
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.15 E-value=0.045 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||||||||+++..+...+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5688999999999998888777653
No 339
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.13 E-value=0.024 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.+.||+|+||||+.++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5778999999999999999876
No 340
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.11 E-value=0.027 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999997653
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.10 E-value=0.019 Score=47.41 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++..+.|.|+.|+||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35567899999999999999999664
No 342
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.04 E-value=0.32 Score=44.36 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..++.-++|+|||..|-++...+..
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~ 82 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKK 82 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4577889999999999888777654
No 343
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.04 E-value=0.032 Score=46.71 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
-+-+.|+||+|||+.|+.|++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999884
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.01 E-value=0.03 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
-.+.+.||+|+||||+.++|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999997764
No 345
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.98 E-value=0.039 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||+|+||||+.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988753
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.95 E-value=0.035 Score=49.54 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+||||+.++|+-.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57889999999999999997764
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.94 E-value=0.038 Score=42.04 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
++..+++.|++|+|||++.+.+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 45568999999999999999996643
No 348
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.93 E-value=0.03 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999997653
No 349
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.92 E-value=0.13 Score=45.36 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.|+||+|||++|..+|.++..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6888999999999999999888654
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.91 E-value=0.032 Score=49.42 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||+|+||||+++.|+..+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998853
No 351
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.91 E-value=0.049 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++++..+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 67899999999999999997763
No 352
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.89 E-value=0.071 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.|.|++|+|||+++..++....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh
Confidence 468899999999999999987643
No 353
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.85 E-value=0.28 Score=43.00 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
++..+.+.|++|+|||++++.++..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4557888999999999999999887643
No 354
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.77 E-value=0.033 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999997654
No 355
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.71 E-value=0.057 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
++++.||+|+||||+.+++...+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999997664
No 356
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.69 E-value=0.25 Score=48.56 Aligned_cols=24 Identities=13% Similarity=0.038 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||.|+|||++.+.++-...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 578899999999999999987643
No 357
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.68 E-value=0.037 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.+.||+|+||||+.++|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999775
No 358
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.68 E-value=0.11 Score=50.81 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=21.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+.+.||.|+|||++.+.++-...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhh
Confidence 578899999999999999987653
No 359
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=93.65 E-value=0.22 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..++.+++|+|||.+|-.++..+..
T Consensus 172 ~~LLad~tGlGKTi~Ai~~i~~l~~ 196 (968)
T 3dmq_A 172 RVLLADEVGLGKTIEAGMILHQQLL 196 (968)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5788999999999999888877665
No 360
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.64 E-value=1.4 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=18.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+++.+|||+|||+++......+
T Consensus 56 ~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 56 SVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp EEEEECCTTSCSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHH
Confidence 57889999999999876654443
No 361
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.63 E-value=0.12 Score=43.26 Aligned_cols=27 Identities=15% Similarity=-0.113 Sum_probs=20.0
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
....+++|+.|.|||+.+-..+.....
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~ 45 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI 45 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345778999999999877666655443
No 362
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.62 E-value=0.046 Score=43.37 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..+.+.|++|+|||++.+.+....+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999976543
No 363
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.60 E-value=0.042 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+||||+.++|+-.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57889999999999999997764
No 364
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.60 E-value=0.045 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.+.||+|+||||+.++|+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999775
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.59 E-value=0.048 Score=41.24 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..+++.|++|+|||++...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999888654
No 366
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.59 E-value=0.039 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999997653
No 367
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.59 E-value=0.033 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999997654
No 368
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.58 E-value=0.038 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999997654
No 369
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.57 E-value=0.33 Score=49.05 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=19.6
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
-.+.++||.|+|||++.+.++-.
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46789999999999999999443
No 370
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.54 E-value=0.033 Score=47.76 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67889999999999999997653
No 371
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.54 E-value=0.051 Score=40.92 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.9
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+++.|++|+|||++.+.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999655
No 372
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.52 E-value=0.055 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.+++.+|+|+|||.++-.++....
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~ 48 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRL 48 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357899999999999988866643
No 373
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.50 E-value=0.035 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997653
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.50 E-value=0.045 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57889999999999999997764
No 375
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.98 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=17.8
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|||+|||+++......
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999998655444
No 376
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.49 E-value=0.055 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.9
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.||+|+||||+.+++...+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5789999999999999999887543
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.48 E-value=0.04 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57889999999999999997653
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.47 E-value=0.046 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57889999999999999997764
No 379
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.068 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
..++.||||||||+++..+...+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999877766554
No 380
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.46 E-value=0.035 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999997663
No 381
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.45 E-value=0.055 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.0
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.|+||+|||++|.-++.+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999877654
No 382
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.44 E-value=0.041 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 67889999999999999997653
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.44 E-value=0.047 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.|.||+|+||||+.++|+-.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57889999999999999997764
No 384
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.43 E-value=0.043 Score=42.56 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.5
Q ss_pred CCCeEEEEeecCCChHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la 128 (247)
.++..+++.|++|+|||++...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356679999999999999998874
No 385
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.053 Score=43.20 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
...-+++.|++|+|||++...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999988643
No 386
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.40 E-value=0.059 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
.++.-+++.|++|+|||++.+.+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999988843
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.39 E-value=0.052 Score=42.24 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=21.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++..+++.|++|+|||++.+.+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999998654
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.38 E-value=0.036 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57889999999999999997653
No 389
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.37 E-value=0.056 Score=42.15 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
++..+.+.|++|+|||++.+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445689999999999999999965
No 390
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.36 E-value=0.038 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997653
No 391
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.35 E-value=0.05 Score=41.72 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3446899999999999999988543
No 392
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.34 E-value=0.043 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57889999999999999997664
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.34 E-value=0.036 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999996653
No 394
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.33 E-value=0.07 Score=43.20 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
-+.|.|+.|+||||.++.|++.|-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999765
No 395
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.33 E-value=0.043 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999997653
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.31 E-value=0.07 Score=41.69 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.-+++.|++|+|||++...+...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 35567899999999999999998654
No 397
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.31 E-value=0.044 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999997653
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.30 E-value=0.064 Score=41.23 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++..+++.|++|+|||++.+.+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556899999999999999998654
No 399
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.27 E-value=0.16 Score=47.17 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=15.8
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
.+++.+|||+|||.++..-+
T Consensus 42 d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHH
Confidence 46778999999998776553
No 400
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.26 E-value=0.045 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999997653
No 401
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.21 E-value=0.046 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999997653
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.20 E-value=0.062 Score=40.87 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.2
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.+++.|++|+|||++...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998643
No 403
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.20 E-value=0.056 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
-+.|.|+.|+||||.++.|++.|
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 36789999999999999999987
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.19 E-value=0.072 Score=40.61 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++..+++.|++|+|||++...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998553
No 405
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.19 E-value=0.041 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999997653
No 406
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.16 E-value=0.06 Score=41.44 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999888654
No 407
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.15 E-value=0.055 Score=41.26 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999998654
No 408
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.15 E-value=0.065 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
-.+.+.||+|+|||+++..++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998874
No 409
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.14 E-value=0.062 Score=40.61 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.3
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..+++.|++|+|||++.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998654
No 410
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.12 E-value=0.32 Score=44.41 Aligned_cols=25 Identities=12% Similarity=0.099 Sum_probs=22.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.|+||+|||++|.-+|.+...
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Confidence 5889999999999999999888654
No 411
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.12 E-value=0.042 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999997654
No 412
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.12 E-value=0.064 Score=41.29 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556889999999999999998553
No 413
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.10 E-value=0.059 Score=41.50 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEeecCCChHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~ 129 (247)
.+.+.|++|+|||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578899999999999999965
No 414
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.08 E-value=0.049 Score=41.40 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4456899999999999999988653
No 415
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.08 E-value=0.041 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+-.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999997653
No 416
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.06 E-value=0.056 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.5
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
..+.+.|++|+|||++.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 357889999999999999997653
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.04 E-value=0.069 Score=41.10 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4556899999999999999998654
No 418
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.04 E-value=0.06 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+.|.||+|+||||+.++|+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5788999999999999999764
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.99 E-value=0.059 Score=41.84 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++-+++.|++|+|||++...+...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999654
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.98 E-value=0.058 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+.+.+++.|++|+|||++.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999998654
No 421
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.96 E-value=0.047 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997653
No 422
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.94 E-value=0.07 Score=41.73 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..-+++.|++|+|||++.+.+...-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999996653
No 423
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.89 E-value=0.13 Score=41.36 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.2
Q ss_pred EEEeecCCChHHHHHHHHHHH
Q psy1694 110 ISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 110 lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.|++|+|||+.|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999998643
No 424
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.87 E-value=0.091 Score=43.60 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
.++..+.+.|.+|+|||+++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3555788899999999999999988754
No 425
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.84 E-value=0.069 Score=41.98 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4456899999999999999988654
No 426
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.79 E-value=0.069 Score=40.97 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3356899999999999999998643
No 427
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.79 E-value=0.075 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
.-+++.|++|+|||++.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998654
No 428
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.069 Score=40.59 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred CeEEEEeecCCChHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~ 129 (247)
..-+++.|++|+|||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34688999999999999998854
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.78 E-value=0.06 Score=41.41 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
...-+++.|++|+|||++.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 445689999999999999998843
No 430
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.78 E-value=0.13 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.8
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..++|.|++|+|||++|..+.+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 36899999999999999988553
No 431
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.77 E-value=0.051 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997765
No 432
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.76 E-value=0.068 Score=40.33 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.|++|+|||++.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3688999999999999998654
No 433
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.74 E-value=2 Score=43.29 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=17.5
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.+|||+|||.++......
T Consensus 103 ~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 5788999999999998654433
No 434
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.73 E-value=0.079 Score=41.53 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999988543
No 435
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.72 E-value=0.062 Score=41.32 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998654
No 436
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.71 E-value=0.17 Score=42.57 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=20.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+++.+++.|++|+|||++...+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999998854
No 437
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.68 E-value=0.068 Score=40.55 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+++.|++|+|||++.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988654
No 438
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.63 E-value=0.086 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
..+++.||||+|||++|..++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999876
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.077 Score=40.90 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++..+++.|++|+|||++...+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34556899999999999999998654
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.60 E-value=0.1 Score=40.16 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||.|+|||++..+|.-.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5678999999999999999777665
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.56 E-value=0.062 Score=42.16 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEeecCCChHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~ 129 (247)
-+.+.|++|+|||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999865
No 442
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.52 E-value=0.084 Score=40.48 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+++.|++|+|||++.+.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998654
No 443
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.51 E-value=0.58 Score=42.11 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.3
Q ss_pred EEEEeecCCChHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTD 125 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~ 125 (247)
.+++.+|+|+|||.+.-
T Consensus 95 d~i~~a~TGsGKT~a~~ 111 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFL 111 (434)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCCchHHHH
Confidence 57889999999998654
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.38 E-value=0.096 Score=40.40 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4556899999999999999888654
No 445
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.37 E-value=0.073 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++.++|+..+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57889999999999999996653
No 446
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.35 E-value=0.081 Score=40.80 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999888654
No 447
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.33 E-value=0.078 Score=41.47 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..+++.|++|+|||++...+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999654
No 448
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.30 E-value=0.2 Score=41.95 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.+++.|++|+|||++...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998543
No 449
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.26 E-value=0.054 Score=43.20 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+.+.|++|+|||++.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999988543
No 450
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.1 Score=41.17 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999998654
No 451
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.24 E-value=0.097 Score=41.50 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=20.8
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++..+++.|++|+|||++.+.+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999998654
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.23 E-value=0.3 Score=43.02 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.4
Q ss_pred CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
...+.|.|+||+|||++.+.+...+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 45688999999999999999987653
No 453
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.19 E-value=0.092 Score=40.75 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..-+++.|++|+|||++.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998654
No 454
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.19 E-value=0.085 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++.+.|.|++|+|||++...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4557899999999999999988553
No 455
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.18 E-value=0.1 Score=40.60 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEeecCCChHHHHHHHHHHH
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~ 130 (247)
.-+.+.|++|+|||++.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999653
No 456
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.16 E-value=0.099 Score=41.30 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+.+.|++|+|||++.+.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3346889999999999999998653
No 457
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.14 E-value=0.099 Score=40.37 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+++.|++|+|||++.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3456899999999999999998654
No 458
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.13 E-value=0.098 Score=40.96 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.++-+++.|++|+|||++.+.+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999998654
No 459
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.07 E-value=0.12 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
-+.+.||+|+|||++++.|++.+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHHhh
Confidence 4788999999999999999987643
No 460
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.07 E-value=0.059 Score=47.60 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+++.+.|.|+-|+|||++++.|++++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445688999999999999999999854
No 461
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.05 E-value=0.085 Score=40.05 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.8
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
-+++.|++|+|||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47889999999999998884
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.01 E-value=0.093 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.6
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++...+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999988643
No 463
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.00 E-value=0.11 Score=40.98 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la 128 (247)
+..-+++.|++|+|||++...+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45568999999999999999884
No 464
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.97 E-value=0.12 Score=39.98 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+++.|++|+|||++.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3346899999999999999998654
No 465
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.96 E-value=0.27 Score=47.33 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=46.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH-----HHHHHhC-CCeEE
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI-----ISNVTAC-DRAIF 182 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~-----~~~l~~~-~~~vl 182 (247)
+.+++|+.|.|||+++-.++..+.. . +.+ ..|.+..++...+.....+ ......+ ..+++
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~---~------~~v-----tAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dll 259 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAG---R------AIV-----TAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWL 259 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSS---C------EEE-----ECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEE
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHh---C------cEE-----ECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEE
Confidence 4688999999999999988777533 1 111 1233333332222111100 0111222 24899
Q ss_pred EEeCCCCCChhhHHHHHh
Q psy1694 183 IFDEVDKFPKGLLDVIIP 200 (247)
Q Consensus 183 ilDEiek~~~~~~~~Ll~ 200 (247)
|+||+-.+|..++..|+.
T Consensus 260 iVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 260 VVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp EEETGGGSCHHHHHHHHT
T ss_pred EEEchhcCCHHHHHHHHh
Confidence 999999999999888875
No 466
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.96 E-value=0.11 Score=40.90 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+++.|++|+|||++...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999988654
No 467
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.91 E-value=0.1 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+||||+.++|+..+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57889999999999999997653
No 468
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.91 E-value=0.32 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=21.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
.+++.+|+|+|||.+|-.++..+..
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHHHHHHh
Confidence 4688899999999999888877655
No 469
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=91.90 E-value=0.17 Score=51.48 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+|.+..++.+.+.+... . .+.++.++|+.|+|||++|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~----d---~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL----R---PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC----C---SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc----C---CCeEEEEEcCCCccHHHHHHHHHH
Confidence 78888888887776531 1 133788999999999999999875
No 470
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.87 E-value=0.11 Score=40.69 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++..+++.|++|+|||++.+.+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4456999999999999999988554
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.86 E-value=0.11 Score=40.46 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
++..+++.|++|+|||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999998843
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.1 Score=41.08 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+.+.+++.|++|+|||++.+.+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4556899999999999999998654
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.84 E-value=0.074 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||++.++|+..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 57889999999999999997653
No 474
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.83 E-value=0.14 Score=42.00 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.3
Q ss_pred eEEEEeecCCChHHHHHHHHHHHh
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l 131 (247)
+.++++|.+|+||+++|+.+.+.+
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 578999999999999999997753
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.81 E-value=0.14 Score=40.11 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
....+++.|++|+|||++.+.+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4456899999999999999998654
No 476
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.81 E-value=0.11 Score=41.09 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+...+++.|++|+|||++...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999998654
No 477
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.79 E-value=0.11 Score=41.31 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.0
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
++.-+.+.|++|+|||++.+.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444688999999999999998853
No 478
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.092 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l 131 (247)
.+.+.||+|+|||+++++|+..+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57888999999999999998875
No 479
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.76 E-value=0.13 Score=40.10 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEeecCCChHHHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+++.|++|+|||++...+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999888443
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.74 E-value=0.1 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
++.-+++.|++|+|||++.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4456899999999999999998665
No 481
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.71 E-value=0.12 Score=41.01 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.2
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..-+++.|++|+|||++.+.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4456899999999999999998665
No 482
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.69 E-value=0.12 Score=42.82 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694 178 DRAIFIFDEVDKFPKGLLDVIIPFIDHH 205 (247)
Q Consensus 178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~ 205 (247)
+..+|++||++-+++++.+.+..+.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 4579999999999998888887776543
No 483
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.66 E-value=0.11 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+++.+++.|++|+|||++.+.+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998654
No 484
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.65 E-value=0.12 Score=40.69 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=20.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
...-+++.|++|+|||++.+.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3446899999999999999988654
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.14 Score=40.07 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.4
Q ss_pred CCeEEEEeecCCChHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
+...+++.|++|+|||++.+.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445689999999999999999853
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.62 E-value=0.097 Score=39.84 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.9
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
-+++.|++|+|||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999884
No 487
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.59 E-value=0.1 Score=40.64 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.1
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
..-+++.|++|+|||++.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999888654
No 488
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.59 E-value=0.092 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVS 129 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~ 129 (247)
.+...+.+.|+||+|||++...+..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 3455689999999999999999854
No 489
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.59 E-value=0.16 Score=43.77 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEeecCCChHHHHHHHHH
Q psy1694 109 AISLHGLPGTGKNYVTDFIV 128 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la 128 (247)
.+.|.||+|+|||++.++|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999997
No 490
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.55 E-value=0.4 Score=41.24 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCeEEEEeec-CCChHHHHHHHHHHHhhc
Q psy1694 106 KALAISLHGL-PGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 106 kpl~lll~G~-~GtGKt~~A~~la~~l~~ 133 (247)
.+.+++++|+ +|+|||++|..+|..+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~ 131 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQ 131 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHh
Confidence 4457888886 799999999999998765
No 491
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.55 E-value=0.12 Score=40.37 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.6
Q ss_pred CeEEEEeecCCChHHHHHHHHHHH
Q psy1694 107 ALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 107 pl~lll~G~~GtGKt~~A~~la~~ 130 (247)
...+++.|++|+|||++.+.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998654
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.55 E-value=0.15 Score=41.26 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++||.|+|||++..+|.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5678999999999999999877775
No 493
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.51 E-value=0.13 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
+..-+++.|++|+|||++.+.+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456899999999999999888654
No 494
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.49 E-value=0.12 Score=39.14 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHhh
Q psy1694 109 AISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 109 ~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
-+++.|++|+|||++...+...-+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 368899999999999999966544
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.46 E-value=0.12 Score=40.32 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=20.7
Q ss_pred CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 105 TKALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 105 ~kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
.+...+++.|++|+|||++.+.+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 35567999999999999999998643
No 496
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.46 E-value=0.19 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.4
Q ss_pred eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694 108 LAISLHGLPGTGKNYVTDFIVSSIFK 133 (247)
Q Consensus 108 l~lll~G~~GtGKt~~A~~la~~l~~ 133 (247)
..+++.|..|+|||++|..+|..+..
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 35677899999999999999998765
No 497
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.44 E-value=0.13 Score=40.79 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSS 130 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~ 130 (247)
...-+++.|++|+|||++...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998654
No 498
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.13 Score=41.19 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+...+++.|++|+|||++.+.+....+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 345689999999999999998865533
No 499
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.40 E-value=0.13 Score=41.16 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.9
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSIF 132 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l~ 132 (247)
+...+++.|++|+|||++...+...-+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344688999999999999999866533
No 500
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.39 E-value=0.14 Score=40.19 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694 106 KALAISLHGLPGTGKNYVTDFIVSSI 131 (247)
Q Consensus 106 kpl~lll~G~~GtGKt~~A~~la~~l 131 (247)
+..-+++.|++|+|||++...+...-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999998775543
Done!