RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1694
(247 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 8e-06
Identities = 33/265 (12%), Positives = 68/265 (25%), Gaps = 85/265 (32%)
Query: 48 KFLNGFGGGEACTDKFIQSSNVRV--LEEQLKQHVHGQELAISHICGALKNHFQNRYHN- 104
E ++ + R L ++ +S I + N
Sbjct: 293 HHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLT---TNPRRLS-IIAESIRDGLATWDNW 347
Query: 105 --------TKALAISLHGL-PGTGKNYVTDFIV--------------------------- 128
T + SL+ L P + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 129 ------SSIFKRYKDKGTSRFVHKFNSRIHFPNEN----HVSL---YRLQLT--NWIISN 173
S+ ++ + T + + EN H S+ Y + T + +
Sbjct: 408 VNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 174 VTACDRAIFIF-----------DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222
D+ + + + F LD F++ +I +T +
Sbjct: 467 PYL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLE-----QKIRHDST-----A 513
Query: 223 NSGGTEIMNTFLELRKSGERYITIH 247
+ I+NT +L+ + YI +
Sbjct: 514 WNASGSILNTLQQLKFY-KPYICDN 537
Score = 39.8 bits (92), Expect = 6e-04
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 43/163 (26%)
Query: 60 TDKFIQSSNVRVLEEQL--KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPG 117
T +I+ + + Q+ K +V + + L+ + + G+ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLELRPAKN---VLIDGVLG 160
Query: 118 TGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-----PNENHVSLYRLQ-LTNWII 171
+GK +V + S + K + +I + N L LQ L I
Sbjct: 161 SGKTWVALDVCLS----------YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 172 SNVTA-CDRAIFIFDEVD-------------KFPKGLL---DV 197
N T+ D + I + + LL +V
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Score = 36.8 bits (84), Expect = 0.006
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 41/140 (29%)
Query: 61 DKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTG- 119
D F+ + + + +++ K + +E I HI + ++ T L +L
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEE--IDHIIMS-----KDAVSGTLRLFWTLLSKQEEMV 79
Query: 120 ---------KNYVTDFIVSSIFKRYKDKG--TSRFVHKFNSRIHFPNEN------HVS-- 160
NY F++S I + T ++ + + R++ N+N +VS
Sbjct: 80 QKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRD-RLY--NDNQVFAKYNVSRL 134
Query: 161 ---------LYRLQLTNWII 171
L L+ ++
Sbjct: 135 QPYLKLRQALLELRPAKNVL 154
Score = 32.5 bits (73), Expect = 0.13
Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 54/224 (24%)
Query: 46 NSKFLNGFGGGEACT------DKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQ 99
N+K N F C K L H+ +++ +K+
Sbjct: 255 NAKAWNAFNLS--CKILLTTRFK----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL- 307
Query: 100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSI----------FKRYKDKGTSRFVHKFNS 149
K L LP +S I + +K + S
Sbjct: 308 -----LKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 150 RIHF--PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVI---IPFIDH 204
++ P E + ++ + +F P LL +I + D
Sbjct: 362 SLNVLEPAE-YRKMFD----------------RLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 205 HAVYNQISFQNTIFLFLSNSGGT-EIMNTFLELRKSGERYITIH 247
V N+ + T I + +LEL+ E +H
Sbjct: 405 MVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 9e-05
Identities = 52/250 (20%), Positives = 76/250 (30%), Gaps = 98/250 (39%)
Query: 3 ISL----LYQHLIIYSIIC-ISGIT-GEFFTL--------SGIAIAAGIAY------FSP 42
IS + Q L Y + + G T GE + G+ A IA F
Sbjct: 236 ISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 43 SIINS-KFLNGFGGGEACTDKF-IQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQN 100
S+ + L F G C + + S +LE+ L+ + + + S +
Sbjct: 295 SVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLE---NNEGVP-SPM---------- 338
Query: 101 RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV- 159
L+IS L + +V+K NS H P V
Sbjct: 339 -------LSIS--NLT--------------------QEQVQDYVNKTNS--HLPAGKQVE 367
Query: 160 -----------------SLYRLQLTNWIISNVTA---CDRAIFIFDE-VDKFPKGLLDVI 198
SLY L LT + A D++ F E KF L V
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 199 IPFIDHHAVY 208
PF H+
Sbjct: 425 SPF---HSHL 431
Score = 29.6 bits (66), Expect = 1.3
Identities = 41/210 (19%), Positives = 69/210 (32%), Gaps = 60/210 (28%)
Query: 64 IQSSNVRVLEEQLKQHVHGQ-ELAI-----SHICGA-LKNHFQNRYHN-TKALA-----I 110
+ + + R L L HG E + S + L+ F T+ A
Sbjct: 1 MDAYSTRPL--TLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 111 SLHGLPGTGK--NYVTDFIVSSIFKRYKD---KGTSRFVHKF--NSRIH-----FPNENH 158
+ L GK YV+ + S ++ + F + + + IH EN
Sbjct: 56 TPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-GLLDVIIPFIDHHA-VYNQISFQNT 216
+L + + I + +TA I DK L + + +A +
Sbjct: 114 TTLVKTK--ELIKNYITAR---IMAKRPFDKKSNSALFRAVG---EGNAQLV-------A 158
Query: 217 IFLFLSNSGG---TEIMNTFLELRKSGERY 243
IF GG T+ + F ELR + Y
Sbjct: 159 IF------GGQGNTD--DYFEELRDLYQTY 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 34.5 bits (78), Expect = 0.022
Identities = 10/125 (8%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 141
Q + I + + + + + + K + + ++ + K
Sbjct: 24 SQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELP 79
Query: 142 RF-VHKFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVII 199
F + + + + ++ ++ + + + F V K K ++I
Sbjct: 80 IFDYIHIDALELAGMDALYEKIWF-AISKENLCGDISLEALNFYITNVPKAKKRKTLILI 138
Query: 200 PFIDH 204
++
Sbjct: 139 QNPEN 143
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 34.4 bits (78), Expect = 0.025
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 3/131 (2%)
Query: 93 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 152
L K L+GL GTGK V ++ + R G N+R
Sbjct: 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89
Query: 153 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS 212
E + + +++ + K L + I +D +
Sbjct: 90 ---ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP 146
Query: 213 FQNTIFLFLSN 223
+ ++
Sbjct: 147 GGQDLLYRITR 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 34.4 bits (78), Expect = 0.032
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146
+ + L N +N H+ + G PGTGK + +++ YKDK T+RFV+
Sbjct: 26 LQQLDILLGNWLRNPGHHYPRATLL--GRPGTGKTVT----LRKLWELYKDKTTARFVY- 78
Query: 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDH 204
N I+ N ++ + I + + + + +D
Sbjct: 79 INGFIYR---NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 133
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 31.5 bits (72), Expect = 0.30
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 72 LEEQLKQHVHGQELAISHICGALK 95
L ++LK V GQ+ AI + A+K
Sbjct: 452 LGDRLKMLVFGQDKAIEALTEAIK 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.8 bits (69), Expect = 0.36
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 6/129 (4%)
Query: 93 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 152
+ + Y K I ++GL GTGK V F++S + K++ K + V+ N+R
Sbjct: 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGK--FKHVY-INTRQI 87
Query: 153 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS 212
+ L + + ++ + K + ++ +D + +
Sbjct: 88 D---TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY 144
Query: 213 FQNTIFLFL 221
+ ++
Sbjct: 145 NDDILYKLS 153
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 30.4 bits (69), Expect = 0.53
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 166 LTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 225
L++ + + + F + + ++ + + ++ +S SG
Sbjct: 94 LSHTFHNQMNDTTQIYFAGQNIS--STYISHLL----------DVLEGKDLSINVISKSG 141
Query: 226 GT-EIMNTFLELRK 238
T E F R
Sbjct: 142 TTTEPAIAFRIFRD 155
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 0.68
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 112 LHGLPGTGKNYVTDFIVSSIFKR------YKDKGTSRFVHKFNSRIHFPNENH-VSLYRL 164
+ G+PG GK T I+S + + + N+ V
Sbjct: 166 VDGVPGCGK---TKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 222
Query: 165 QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-----NQISFQNTIFL 219
L N+ R DE G ++ ++ Y QI + N +
Sbjct: 223 FLMNYGKGARCQFKR--LFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG 280
Query: 220 FL 221
F
Sbjct: 281 FP 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 29.1 bits (65), Expect = 1.2
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 142
Q + + ALK + K ++ G P TGK+ + + ++ +
Sbjct: 105 QNIELITFINALKLWLKGIP---KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV------- 154
Query: 143 FVHKFNSRIHFP 154
+ N + HF
Sbjct: 155 -LSFANHKSHFW 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.3 bits (65), Expect = 1.3
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 93 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 145
+ N + GL GTGK +V+ +I + I + K+ + V
Sbjct: 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVK 83
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex,
pyruvate, lyase; HET: KPI; 1.80A {Azospirillum
brasilense} PDB: 3fkk_A
Length = 309
Score = 28.5 bits (64), Expect = 1.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 16 ICISGITGEFFTLS 29
+CI E F ++
Sbjct: 46 LCILANFSEQFAIT 59
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 28.6 bits (63), Expect = 2.0
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD--EVDKFPKGLLDVIIPFIDHHAVYN 209
+ + L + + + ++ D + K K +D ++ IDHH
Sbjct: 94 KLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQ 153
Query: 210 QISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
+ + +S S + + N + E +
Sbjct: 154 KHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDRE 186
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 27.2 bits (61), Expect = 4.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 16 ICISGITGEFFTLS 29
+ + GI GE L
Sbjct: 46 VTVLGILGEAPKLD 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (62), Expect = 5.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 72 LEEQLKQHVHGQELAISHICGALK 95
+E L V GQ+ A+ + A++
Sbjct: 485 MENILHSRVIGQDEAVVAVAKAVR 508
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 26.9 bits (60), Expect = 6.0
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 188 DKFPKGLLDVIIPFIDH-------HAVYNQISFQNTIFLFLSNSGGT-EIMNTFLELRK 238
F I F+ + + + ++ ++ +S SG T E F ++
Sbjct: 100 SSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQ 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 26.8 bits (59), Expect = 7.3
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 82 GQELAISHICGALKNHFQNRYHNTKAL---------AISLHGLPGTGK 120
G + ++ + L N ++ ++ K A L+G PG GK
Sbjct: 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGK 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 26.4 bits (58), Expect = 7.9
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 142
+ ++ K I L G TGK + + I ++
Sbjct: 82 NGYDPQYAASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTV-------PFYG 132
Query: 143 FVHKFNSRIHFP 154
V+ N +FP
Sbjct: 133 CVNWTNE--NFP 142
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 26.5 bits (58), Expect = 8.1
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 132 FKRYKDKGTSRFVHKFNSRIHFPNENHVSLY 162
R+ K K + FP +
Sbjct: 238 MVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 26.6 bits (57), Expect = 9.6
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 90 ICGALKNHFQNRYHNTKA-----LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 144
+ +L+ + N+ ++ +S +PG G++ + +FI S K D T V
Sbjct: 175 LAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVV 234
Query: 145 HKFNSRIHFP----NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIP 200
+ ++ + +E H + R + S + + I D + V P
Sbjct: 235 YGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKP 294
Query: 201 FIDHH 205
FI +
Sbjct: 295 FIWLN 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.423
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,918,414
Number of extensions: 231941
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 38
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.9 bits)