RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1694
(247 letters)
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 63.2 bits (153), Expect = 2e-12
Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 130
LEE+L + V GQ+ AI + A++ + + G G GK + + ++
Sbjct: 17 LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 76
Query: 131 IF----KRYKDKGTSRFVHKFNSRIHFPNENHV-SLYRLQLTNWIISNVTACDRAIFIFD 185
+F + T SR+ +V QLT V ++ +FD
Sbjct: 77 LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA----VRRRPYSVILFD 132
Query: 186 EVDKFPKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTF 233
E++K + ++++ +D + + F+NT+ + SN G I+
Sbjct: 133 EIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 184
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 47.1 bits (111), Expect = 6e-07
Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 7/168 (4%)
Query: 72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 130
L ++LK V GQ+ AI + A+K H K + G G GK VT + +
Sbjct: 16 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 75
Query: 131 IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190
+ S ++ + + + V A+ + DE++K
Sbjct: 76 LGIELLRFDMSEYMERHTVSRLIGAPPGYVGF--DQGGLLTDAVIKHPHAVLLLDEIEKA 133
Query: 191 PKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTFL 234
+ ++++ +D+ + + F+N + + +N+G E +
Sbjct: 134 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 181
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 44.1 bits (103), Expect = 6e-06
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 11/129 (8%)
Query: 70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA------ISLHGLPGTGKNYV 123
R + +L QH+ GQ A + AL+N ++ I + G G GK +
Sbjct: 6 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 65
Query: 124 TDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 183
+ + ++F + R + + I
Sbjct: 66 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII-----RDLTDSAGGAIDAVEQNGIVF 120
Query: 184 FDEVDKFPK 192
DE+DK K
Sbjct: 121 IDEIDKICK 129
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 35.5 bits (81), Expect = 0.003
Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 28/157 (17%)
Query: 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139
V GQE ++ + L R H+ A G G GK + + +
Sbjct: 14 VVGQEHVLTALANGLSL---GRIHH----AYLFSGTRGVGKTSIARLLAKGLNCETGITA 66
Query: 140 TSRFVHKFNSRIHFPNENHVSLYRL------------QLTNWIISNVTACDRAIFIFDEV 187
T V I V L + L + + +++ DEV
Sbjct: 67 TPCGVCDNCREIE--QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 124
Query: 188 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224
+ + ++ ++ ++ FL +
Sbjct: 125 HMLSRHSFNALLKTLEEPP-------EHVKFLLATTD 154
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 34.7 bits (78), Expect = 0.007
Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 2/138 (1%)
Query: 68 NVRVLEEQ-LKQHVHGQELAISHICGALKNH-FQNRYHNTKALAISLHGLPGTGKNYVTD 125
+ RV +E + + + + N + + G G GK +
Sbjct: 5 DRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 64
Query: 126 FIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 185
F V + + +G + N+ +SL Q I +
Sbjct: 65 FTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALV 124
Query: 186 EVDKFPKGLLDVIIPFID 203
+ L VI+
Sbjct: 125 DNLYVENHYLLVILDEFQ 142
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.9 bits (68), Expect = 0.12
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 10/142 (7%)
Query: 82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 141
+E + + L N +N +L G PGTGK + +++ YKDK T+
Sbjct: 20 HREQQLQQLDILLGNWLRNP--GHHYPRATLLGRPGTGK----TVTLRKLWELYKDKTTA 73
Query: 142 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPF 201
RFV+ + I + + + +
Sbjct: 74 RFVYINGFIYRNFTAII----GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLV 129
Query: 202 IDHHAVYNQISFQNTIFLFLSN 223
+D I L
Sbjct: 130 LDDAFNLAPDILSTFIRLGQEA 151
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.4 bits (67), Expect = 0.13
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 12/141 (8%)
Query: 80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139
V Q+ A++ + LK+ + + +G PGTGK + ++ K
Sbjct: 14 VTAQDHAVTVLKKTLKS---ANLPH-----MLFYGPPGTGKTSTILALTKELYGPDLMKS 65
Query: 140 TSRFV----HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLL 195
+ + S + +N L + + + N I I DE D
Sbjct: 66 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ 125
Query: 196 DVIIPFIDHHAVYNQISFQNT 216
+ ++ ++ +
Sbjct: 126 SALRRTMETYSGVTRFCLICN 146
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.0 bits (69), Expect = 0.14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTK 106
+ L+ L +V GQE A A+ NH++ K
Sbjct: 9 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEK 45
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 30.5 bits (68), Expect = 0.15
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 138
I + + F+ N L I G G+GK++ + I + + ++Y +
Sbjct: 9 IEFLDKYIPEWFETG--NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGE 58
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.7 bits (66), Expect = 0.37
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 74 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA------ISLHGLPGTGKNY 122
+L QH+ GQ A + AL+N ++ I + G G GK
Sbjct: 10 SELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTE 64
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.0 bits (65), Expect = 0.39
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 142
Q++ GALK+ + K + G TGK+Y S + S
Sbjct: 32 QQIEFITFLGALKSFLKGTP---KKNCLVFCGPANTGKSYFGM----SFIHFIQGAVIS- 83
Query: 143 FVHKFNSRIHFP 154
FV NS HF
Sbjct: 84 FV---NSTSHFW 92
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.9 bits (58), Expect = 2.4
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 80 VHGQELAISHICGALKNHFQN-RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 138
GQE ++ L + + + L G PG GK + I S +
Sbjct: 11 FIGQE----NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 66
Query: 139 GTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188
V + + + + + + + V + ++D
Sbjct: 67 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 116
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.1 bits (56), Expect = 3.7
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 82 GQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGK 120
GQE + L+ + + + L + L G PG GK
Sbjct: 13 GQE----RLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGK 48
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.1 bits (56), Expect = 3.9
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 93 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK 136
L+ Q + A L G PG+GK + I
Sbjct: 18 NLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI 61
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 25.7 bits (55), Expect = 5.1
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 74 EQLKQHVH----GQELAISHICGALKNHFQN--RYHNTKALAISLHGLPGTGK 120
E ++ ++ + + Q T +++ L G P +GK
Sbjct: 1 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGK 53
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 25.8 bits (56), Expect = 5.4
Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 13/117 (11%)
Query: 74 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 133
L + + + LK N K G +GK + ++
Sbjct: 127 AWLHCLLPKMDSVV---YDFLKCMVYNI---PKKRYWLFKGPIDSGKTTLAAALLELCGG 180
Query: 134 RYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR-AIFIFDEVDK 189
+ + R++F + + + + + + D + + +D
Sbjct: 181 KALNVNLP------LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDN 231
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 25.6 bits (55), Expect = 7.0
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 103 HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD 137
+ L + + G PG GK+ + + +
Sbjct: 50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 84
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 25.2 bits (54), Expect = 7.4
Identities = 10/77 (12%), Positives = 22/77 (28%)
Query: 103 HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY 162
+A+ + + G+PG GK+ D + S + + +
Sbjct: 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 106
Query: 163 RLQLTNWIISNVTACDR 179
RL + +
Sbjct: 107 RLAIDRNAFIRPSPSSG 123
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 25.3 bits (55), Expect = 8.6
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI 127
+ + K I L G TGK + + I
Sbjct: 82 NGYDPQYAASVFLGWATKK--FGKRNTIWLFGPATTGKTNIAEAI 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.423
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,356
Number of extensions: 43658
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 31
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)