BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16940
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KYS|A Chain A, Crystal Structure Of Human Yap And Tead Complex
pdb|3KYS|C Chain C, Crystal Structure Of Human Yap And Tead Complex
Length = 219
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 150/211 (71%), Positives = 172/211 (81%), Gaps = 6/211 (2%)
Query: 32 LVKFWADLNSSSIQDEAGAFYGVNSHIGLIYHS---SINKAVDVTEIYDKFPERTGGLKE 88
LV+F A L D V HIG HS + ++VD+ +IYDKFPE+ GGLKE
Sbjct: 11 LVEFSAFLEQQRDPDSYNKHLFV--HIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKE 68
Query: 89 LYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVV 148
L+ +GPQ+AFFLVKFWADLN + IQD+AGAFYGV SQYESS++MT+TCSTKVCSFGKQVV
Sbjct: 69 LFGKGPQNAFFLVKFWADLNCN-IQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVV 127
Query: 149 EKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTNR 208
EKVETEY RFENGR+VYR++RSPMCEYM+NFI KLK LPEKYMMNSVLENF+IL VVTNR
Sbjct: 128 EKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNR 187
Query: 209 DTQETLLCTAYMFAVSTSEHGAQHHIYKLVK 239
DTQETLLC A +F VS SEHGAQHHIY+LVK
Sbjct: 188 DTQETLLCMACVFEVSNSEHGAQHHIYRLVK 218
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 5/73 (6%)
Query: 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIGL 60
+VD+ +IYDKFPE+ GGLKEL+ +GPQ+AFFLVKFWADLN +IQD+AGAFYGV S
Sbjct: 49 SVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLN-CNIQDDAGAFYGVTSQ--- 104
Query: 61 IYHSSINKAVDVT 73
Y SS N V +
Sbjct: 105 -YESSENMTVTCS 116
>pdb|3JUA|A Chain A, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|C Chain C, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|E Chain E, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|G Chain G, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
Length = 220
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 135/172 (78%), Positives = 155/172 (90%), Gaps = 1/172 (0%)
Query: 68 KAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYE 127
+ VD+ +IYDKFPE+ GGLKEL++RGP +AFFLVKFWADLN++ I DE AFYGV+SQYE
Sbjct: 49 ETVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLNTN-IDDEGSAFYGVSSQYE 107
Query: 128 SSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLP 187
S ++M ITCSTKVCSFGKQVVEKVETEY R+ENG Y+YR+HRSP+CEYM+NFI KLK LP
Sbjct: 108 SPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLP 167
Query: 188 EKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVK 239
EKYMMNSVLENF+ILQVVTNRDTQETLLC AY+F VS SEHGAQHHIY+LVK
Sbjct: 168 EKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVK 219
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 1/56 (1%)
Query: 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNS 56
VD+ +IYDKFPE+ GGLKEL++RGP +AFFLVKFWADLN ++I DE AFYGV+S
Sbjct: 50 TVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLN-TNIDDEGSAFYGVSS 104
>pdb|4EAZ|A Chain A, Vgll1-Tead4 Structure
pdb|4EAZ|B Chain B, Vgll1-Tead4 Structure
Length = 223
Score = 294 bits (752), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 135/172 (78%), Positives = 155/172 (90%), Gaps = 1/172 (0%)
Query: 68 KAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYE 127
+ VD+ +IYDKFPE+ GGLKEL++RGP +AFFLVKFWADLN++ I DE AFYGV+SQYE
Sbjct: 52 ETVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLNTN-IDDEGSAFYGVSSQYE 110
Query: 128 SSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLP 187
S ++M ITCSTKVCSFGKQVVEKVETEY R+ENG Y+YR+HRSP+CEYM+NFI KLK LP
Sbjct: 111 SPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLP 170
Query: 188 EKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVK 239
EKYMMNSVLENF+ILQVVTNRDTQETLLC AY+F VS SEHGAQHHIY+LVK
Sbjct: 171 EKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVK 222
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 1/56 (1%)
Query: 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNS 56
VD+ +IYDKFPE+ GGLKEL++RGP +AFFLVKFWADLN ++I DE AFYGV+S
Sbjct: 53 TVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLN-TNIDDEGSAFYGVSS 107
>pdb|3L15|A Chain A, Human Tead2 Transcriptional Factor
pdb|3L15|B Chain B, Human Tead2 Transcriptional Factor
Length = 231
Score = 257 bits (657), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 126/180 (70%), Positives = 149/180 (82%), Gaps = 8/180 (4%)
Query: 68 KAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGA--------F 119
++VDV +IYDKFPE+ GGL+ELYDRGP AFFLVKFWADLN +EAGA F
Sbjct: 51 ESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGF 110
Query: 120 YGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNF 179
YGV+SQYES + T+TCS+KVCSFGKQVVEKVETE + E+GR+VYR+ RSP CEY+VNF
Sbjct: 111 YGVSSQYESLEHXTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPXCEYLVNF 170
Query: 180 ILKLKRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVK 239
+ KL++LPE+Y NSVLENF+ILQVVTNRDTQE LLCTAY+F VSTSE GAQHHIY+LV+
Sbjct: 171 LHKLRQLPERYXXNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 230
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 8/80 (10%)
Query: 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDE--------AGAFY 52
+VDV +IYDKFPE+ GGL+ELYDRGP AFFLVKFWADLN +E +G FY
Sbjct: 52 SVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFY 111
Query: 53 GVNSHIGLIYHSSINKAVDV 72
GV+S + H ++ + V
Sbjct: 112 GVSSQYESLEHXTLTCSSKV 131
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 22 YDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIGLIYHSSINKAVDVTEIYDKFPE 81
+++G D F F A + I GA + + I + SIN AVD+ +I F +
Sbjct: 1147 WEKGEGDIFPYFVFGAACSEVEIDCLTGAHKNIRTDIVMDGSFSINPAVDIGQIEGAFVQ 1206
Query: 82 RTG--GLKE--------LYDRGP 94
G L+E LY RGP
Sbjct: 1207 GLGLYTLEELKYSPEGVLYTRGP 1229
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 379 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 437
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 438 LYESWTKKSPSPEF 451
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 391 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 449
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 450 LYESWTKKSPSPEF 463
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 423 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 481
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 482 LYESWTKKSPSPEF 495
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 393 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 451
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 452 LYESWTKKSPSPEF 465
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 393 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 451
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 452 LYESWTKKSPSPEF 465
>pdb|2B0T|A Chain A, Structure Of Monomeric Nadp Isocitrate Dehydrogenase
pdb|3MBC|A Chain A, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
pdb|3MBC|B Chain B, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
Length = 738
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 55 NSHIGLIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQD 114
N+ G++ +++KA + +K P R G E+ +RG F+L KFWAD ++ +D
Sbjct: 619 NTKAGVLA-DALDKATEKLLNEEKSPSRKVG--EIDNRGSH--FWLTKFWADELAAQTED 673
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRY 163
WA+ NS +Q+ A+ +S E + ++ + C+ + S + +++++ FE G+
Sbjct: 393 WAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFE-GKS 451
Query: 164 VYR--MHRSPMCEY 175
+Y +SP E+
Sbjct: 452 LYESWTKKSPSPEF 465
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 132 MTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVN 178
+ TC K+C FG + E ++ F R +R+P E M+N
Sbjct: 177 INTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAP--EIMLN 221
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMT--ITCSTKV----CSFGKQVVEKVETEYPR 157
WA S + F ++ + + SDS+ + C + G ++E++ YP+
Sbjct: 104 WASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPK 163
Query: 158 FENGRYVYRMHRSPMCEYMV---NFILKLKRLPEKYMMNSVLENFSILQVVTNR 208
Y ++ M + +V N +L LKRL + VL+N ++ ++ T+R
Sbjct: 164 KLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDR 217
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMT--ITCSTKV----CSFGKQVVEKVETEYPR 157
WA S + F ++ + + SDS+ + C + G ++E++ YP+
Sbjct: 104 WASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPK 163
Query: 158 FENGRYVYRMHRSPMCEYMV---NFILKLKRLPEKYMMNSVLENFSILQVVTNR 208
Y ++ M + +V N +L LKRL + VL+N ++ ++ T+R
Sbjct: 164 KLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDR 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,190,338
Number of Sequences: 62578
Number of extensions: 292410
Number of successful extensions: 616
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 24
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)