Query psy16940
Match_columns 240
No_of_seqs 85 out of 101
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3841|consensus 100.0 8.4E-94 1.8E-98 669.1 2.6 210 27-240 243-455 (455)
2 PF01285 TEA: TEA/ATTS domain 100.0 5.2E-82 1.1E-86 601.0 17.9 202 27-232 211-431 (431)
3 KOG3841|consensus 100.0 2.1E-31 4.6E-36 250.2 -1.6 142 1-169 285-440 (455)
4 PF01285 TEA: TEA/ATTS domain 99.9 2E-27 4.3E-32 227.2 1.8 143 1-169 254-424 (431)
5 PF14542 Acetyltransf_CG: GCN5 56.4 7.3 0.00016 29.1 1.6 45 132-183 23-72 (78)
6 PF10623 PilI: Plasmid conjuga 42.3 24 0.00052 27.7 2.5 30 121-171 33-62 (83)
7 PF08905 DUF1850: Domain of un 38.2 44 0.00096 25.5 3.5 45 124-169 17-62 (91)
8 PF09538 FYDLN_acid: Protein o 28.0 24 0.00052 28.6 0.5 24 153-176 8-32 (108)
9 PF14492 EFG_II: Elongation Fa 24.5 75 0.0016 23.4 2.6 24 194-217 27-50 (75)
10 PF08557 Lipid_DES: Sphingolip 23.6 39 0.00084 23.1 0.8 19 5-27 20-38 (39)
11 PF12218 End_N_terminal: N ter 21.2 68 0.0015 24.3 1.7 18 155-172 41-59 (67)
No 1
>KOG3841|consensus
Probab=100.00 E-value=8.4e-94 Score=669.10 Aligned_cols=210 Identities=68% Similarity=1.088 Sum_probs=204.0
Q ss_pred CCceeeEEEeeeccCCcccCccCcceeeeeeee---cccCCccceeeEehhhhccCCCccCcchhhhccCCCCceeeeee
Q psy16940 27 QDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG---LIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKF 103 (240)
Q Consensus 27 ~~affLVkFwAdln~~~iQD~~gafyhvfV~I~---~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~~gp~~affLVKF 103 (240)
.+.++|++|.|+++++ .++..+.+|+||||+ ++|+ |++|+||+||||||||++||||+|||++||||+||||||
T Consensus 243 s~kl~~~efsaf~e~~--k~p~~y~khlfv~I~~~~~~~~-p~le~vdirqiydKfPekkgglkEL~ekgp~nafflvk~ 319 (455)
T KOG3841|consen 243 SEKLRLLEFSAFAEQQ--KDPDIYAKHLFVHIGQTNPSYS-PLLESVDIRQIYDKFPEKKGGLKELFEKGPPNAFFLVKF 319 (455)
T ss_pred cchhhhHHHHhhhhhc--cChhhhhhhhhhhccCcCCccC-ccccccceeeccccCchhcCCHHHHhhcCCCccchhHhH
Confidence 4559999999999976 788899999999999 6777 889999999999999999999999999999999999999
Q ss_pred eeecCCCCcCcccCceeccccccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCCCcHHHHHHHHHH
Q psy16940 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKL 183 (240)
Q Consensus 104 WAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~spmCeym~~Fi~kL 183 (240)
|||||+ ++.++.|+||||+|+|||.|+|+++|||+||||||||||||||||+|+|||||||||+||||||||+||||||
T Consensus 320 wAdLn~-~~~~e~~~~ygV~sqYes~e~~~~~~St~vcSfgkqvvekvEte~~~~e~g~~vyrl~rsPmceYmiNfi~Kl 398 (455)
T KOG3841|consen 320 WADLNS-AIKIEIGAFYGVSSQYESIENMQLTCSTKVCSFGKQVVEKVETEYARLENGRYVYRLQRSPMCEYMINFIHKL 398 (455)
T ss_pred HHhhcc-ccccccccccccchhhcchhheeEEeccccccccchhhhhhhhhhhcccCCceEEEecCCchHHHHHHHHHHH
Confidence 999999 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCceeEEEEecCC
Q psy16940 184 KRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVKP 240 (240)
Q Consensus 184 k~Lp~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~q~~vyrLv~~ 240 (240)
|+||++||||+||||||||||||||+|||||||+|||||||++|||+||||||||++
T Consensus 399 k~lpe~ymmnsvleNftilQvvtnrdTqelLL~~a~vfEvS~~e~g~~hhiyrlv~~ 455 (455)
T KOG3841|consen 399 KHLPEKYMMNSVLENFTILQVVTNRDTQELLLCIAYVFEVSPSERGAQHHIYRLVKD 455 (455)
T ss_pred hcCCcccchhhHhhhceeeEeecccchhhHHhhhheeeeeccccCCCcchhhhhccC
Confidence 999999999999999999999999999999999999999999999999999999985
No 2
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=100.00 E-value=5.2e-82 Score=600.99 Aligned_cols=202 Identities=70% Similarity=1.097 Sum_probs=178.4
Q ss_pred CCceeeEEEeeeccCCcccCccCcceeeeeeee---cccCCccceeeEehhhhccCCCccCcchhhhccCCCCceeeeee
Q psy16940 27 QDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG---LIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKF 103 (240)
Q Consensus 27 ~~affLVkFwAdln~~~iQD~~gafyhvfV~I~---~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~~gp~~affLVKF 103 (240)
...++||+|.|+++.+ +++..+.+|+||||+ ++|+||+||.|||+|||||||+++|||+|||++||++|||||||
T Consensus 211 SsKLrLvEFSAFVEq~--~dpd~y~kHlfv~I~~~~~~~~dP~le~vdi~qi~dkFP~~~~~L~eL~~~gP~~afflvkf 288 (431)
T PF01285_consen 211 SSKLRLVEFSAFVEQP--RDPDTYNKHLFVHIGQSNPSPSDPPLELVDIRQIYDKFPEKKGGLKELYEKGPPNAFFLVKF 288 (431)
T ss_dssp ESSEEEEEEEEEEEEE--CCCTEEEEEEEEEEE-----STS-S-EEEEGGGTGGGST-STTTHHHHHHHS-GGGEEEEEE
T ss_pred ccccccccHHHHhhCc--CCccccCCceEEeCCCCCcCCCCCCcccccccchhhcCccccHHHHHHHhhCCCCcEEEeee
Confidence 3459999999999976 566678889999999 78999999999999999999999999999999999999999999
Q ss_pred eeec-CCCCcCcc--------cCceeccc---cccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCC
Q psy16940 104 WADL-NSSSIQDE--------AGAFYGVN---SQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSP 171 (240)
Q Consensus 104 WAdL-~~~~~~~~--------~~~~ygv~---S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~sp 171 (240)
|||| +. ++++. +|++|||+ |+|||.|||+|+|||||||||||||||||||++++|||||+|| +|||
T Consensus 289 wadl~~~-~i~d~~~~~~~~~~~~~y~~~~~~s~yes~e~~~~~~sTkVcSfgKqvvEkve~~~~~~e~gr~~yr-~~s~ 366 (431)
T PF01285_consen 289 WADLENP-NIQDEQISQMENWSCSFYGVSDGQSQYESPENMTITCSTKVCSFGKQVVEKVETEYARFENGRYVYR-HRSP 366 (431)
T ss_dssp EE-------CCCT--------SCEEEEEE---EEEEESS--EEEEEEEEEETTEEEEEEEEEEE-EEETTEEEEE-EEEE
T ss_pred eeeecCC-CcccchhccccccCCCcccccchhhcccchhcCcceeccEEEecCceeeeccCcccceecCCeeeec-cCCH
Confidence 9999 66 89988 99999999 9999999999999999999999999999999999999999999 9999
Q ss_pred CcHHHHHHHHHHhcCCchhhhhhhhhccceeEEEEc----CCCceeEEEEEEEEEeeeCCCCcee
Q psy16940 172 MCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTN----RDTQETLLCTAYMFAVSTSEHGAQH 232 (240)
Q Consensus 172 mCeym~~Fi~kLk~Lp~~~mmn~VLenftilqvv~n----~~T~E~Ll~~a~vFeVs~~~~g~q~ 232 (240)
|||||+|||+|||+||++||||+|||||||||||+| ++|||+|||||||||||+++||+||
T Consensus 367 ~cey~~~fi~~l~~l~~~~~mn~vlenft~~qvv~~~~~~~~t~e~ll~~~~vfevs~~~hg~~h 431 (431)
T PF01285_consen 367 MCEYMANFIHKLRRLPEKYMMNSVLENFTILQVVTNPDTTRDTQETLLCLAYVFEVSPQEHGAQH 431 (431)
T ss_dssp S-HHHHHHHHHHCTSSSHHHHHHHHTTEEEEEEEEE----TTTTEEEEEEEEEEEE-SSTS--EE
T ss_pred HHHHHHhhhhhccCCCccccccceeceeeheeeccccccccCCCCccceeeeeeecCCCccccCC
Confidence 999999999999999999999999999999999999 9999999999999999999999998
No 3
>KOG3841|consensus
Probab=99.96 E-value=2.1e-31 Score=250.19 Aligned_cols=142 Identities=39% Similarity=0.738 Sum_probs=127.2
Q ss_pred CcchhhhhhcCCCCccchhHhhhcCCCCceeeEEEeeeccCCcccCccCcceeeeeeee-------------cccCCccc
Q psy16940 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG-------------LIYHSSIN 67 (240)
Q Consensus 1 ~vd~~qi~dKfP~~k~~l~ely~~gp~~affLVkFwAdln~~~iQD~~gafyhvfV~I~-------------~s~~~p~l 67 (240)
+|||||||||||+|||||+|||++||||||||||||||||.. ++++.++||+|.++|+ |||+++++
T Consensus 285 ~vdirqiydKfPekkgglkEL~ekgp~nafflvk~wAdLn~~-~~~e~~~~ygV~sqYes~e~~~~~~St~vcSfgkqvv 363 (455)
T KOG3841|consen 285 SVDIRQIYDKFPEKKGGLKELFEKGPPNAFFLVKFWADLNSA-IKIEIGAFYGVSSQYESIENMQLTCSTKVCSFGKQVV 363 (455)
T ss_pred ccceeeccccCchhcCCHHHHhhcCCCccchhHhHHHhhccc-cccccccccccchhhcchhheeEEeccccccccchhh
Confidence 699999999999999999999999999999999999999995 7889999999999998 99999999
Q ss_pred eeeEehhhhccCCCccCcchhhhc-cCCCCceeeeeeeeecCCCCcCcccCceeccccccccCCceeEEEeeeeeeeCce
Q psy16940 68 KAVDVTEIYDKFPERTGGLKELYD-RGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQ 146 (240)
Q Consensus 68 E~Vdi~qIydKfP~~kggL~ely~-~gp~~affLVKFWAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~stkv~sfgkq 146 (240)
|+|+.+ |..+|. | +-.|. +.+|+|.|||+|.+.|+. ++.. |+||| ++||+||. |
T Consensus 364 ekvEte--~~~~e~---g-~~vyrl~rsPmceYmiNfi~Klk~--lpe~----ymmns---vleNftil----------Q 418 (455)
T KOG3841|consen 364 EKVETE--YARLEN---G-RYVYRLQRSPMCEYMINFIHKLKH--LPEK----YMMNS---VLENFTIL----------Q 418 (455)
T ss_pred hhhhhh--hhcccC---C-ceEEEecCCchHHHHHHHHHHHhc--CCcc----cchhh---Hhhhceee----------E
Confidence 999888 555554 4 45555 889999999999999998 7776 99999 99999999 9
Q ss_pred eeeeeeeccccccCCeeEEEeCC
Q psy16940 147 VVEKVETEYPRFENGRYVYRMHR 169 (240)
Q Consensus 147 vveKvEte~~~~e~gr~~y~~~~ 169 (240)
||.+.||.+ .+-.-.|||....
T Consensus 419 vvtnrdTqe-lLL~~a~vfEvS~ 440 (455)
T KOG3841|consen 419 VVTNRDTQE-LLLCIAYVFEVSP 440 (455)
T ss_pred eecccchhh-HHhhhheeeeecc
Confidence 999999944 4578889998763
No 4
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=99.93 E-value=2e-27 Score=227.19 Aligned_cols=143 Identities=38% Similarity=0.692 Sum_probs=119.5
Q ss_pred CcchhhhhhcCCCCccchhHhhhcCCCCceeeEEEeeeccCCcccCc--------cCcceeee---eeee----------
Q psy16940 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDE--------AGAFYGVN---SHIG---------- 59 (240)
Q Consensus 1 ~vd~~qi~dKfP~~k~~l~ely~~gp~~affLVkFwAdln~~~iQD~--------~gafyhvf---V~I~---------- 59 (240)
+|||+|||||||++|++|+|||++||++||||||||||++..+++|+ .+++|++. ++|+
T Consensus 254 ~vdi~qi~dkFP~~~~~L~eL~~~gP~~afflvkfwadl~~~~i~d~~~~~~~~~~~~~y~~~~~~s~yes~e~~~~~~s 333 (431)
T PF01285_consen 254 LVDIRQIYDKFPEKKGGLKELYEKGPPNAFFLVKFWADLENPNIQDEQISQMENWSCSFYGVSDGQSQYESPENMTITCS 333 (431)
T ss_dssp EEEGGGTGGGST-STTTHHHHHHHS-GGGEEEEEEEE------CCCT--------SCEEEEEE---EEEEESS--EEEEE
T ss_pred cccccchhhcCccccHHHHHHHhhCCCCcEEEeeeeeeecCCCcccchhccccccCCCcccccchhhcccchhcCcceec
Confidence 48999999999999999999999999999999999999943358888 88999999 8888
Q ss_pred ---cccCCccceeeEehhhhccCCCccCcchhhhccCCCCceeeeeeeeecCCCCcCcccCceeccccccccCCceeEEE
Q psy16940 60 ---LIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITC 136 (240)
Q Consensus 60 ---~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~~gp~~affLVKFWAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~ 136 (240)
|||+++++|+|+.. +|...+| |.+|+..+|+|.||++|.+.|.. +++. |+||| ++||+|+.
T Consensus 334 TkVcSfgKqvvEkve~~-----~~~~e~g-r~~yr~~s~~cey~~~fi~~l~~--l~~~----~~mn~---vlenft~~- 397 (431)
T PF01285_consen 334 TKVCSFGKQVVEKVETE-----YARFENG-RYVYRHRSPMCEYMANFIHKLRR--LPEK----YMMNS---VLENFTIL- 397 (431)
T ss_dssp EEEEETTEEEEEEEEEE-----E-EEETT-EEEEEEEEES-HHHHHHHHHHCT--SSSH----HHHHH---HHTTEEEE-
T ss_pred cEEEecCceeeeccCcc-----cceecCC-eeeeccCCHHHHHHHhhhhhccC--CCcc----ccccc---eeceeehe-
Confidence 99999999999985 5776677 88999999999999999999998 7777 99999 89999999
Q ss_pred eeeeeeeCceeeee----eeeccccccCCeeEEEeCC
Q psy16940 137 STKVCSFGKQVVEK----VETEYPRFENGRYVYRMHR 169 (240)
Q Consensus 137 stkv~sfgkqvveK----vEte~~~~e~gr~~y~~~~ 169 (240)
|||.+ .+|.+.. -.=.|||....
T Consensus 398 ---------qvv~~~~~~~~t~e~l-l~~~~vfevs~ 424 (431)
T PF01285_consen 398 ---------QVVTNPDTTRDTQETL-LCLAYVFEVSP 424 (431)
T ss_dssp ---------EEEEE----TTTTEEE-EEEEEEEEE-S
T ss_pred ---------eeccccccccCCCCcc-ceeeeeeecCC
Confidence 99999 8887663 45588888743
No 5
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=56.45 E-value=7.3 Score=29.11 Aligned_cols=45 Identities=31% Similarity=0.569 Sum_probs=26.5
Q ss_pred eeEEEeeeeeeeC-----ceeeeeeeeccccccCCeeEEEeCCCCCcHHHHHHHHHH
Q psy16940 132 MTITCSTKVCSFG-----KQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKL 183 (240)
Q Consensus 132 ~~it~stkv~sfg-----kqvveKvEte~~~~e~gr~~y~~~~spmCeym~~Fi~kL 183 (240)
+.|+.+-..-+|. +++++.+ .++++ ++|.-+. |+|+|+..|+.|=
T Consensus 23 ~~i~hT~V~~~~rGqGia~~L~~~~-l~~a~-~~~~kv~-----p~C~y~~~~~~~h 72 (78)
T PF14542_consen 23 IVITHTEVPPELRGQGIAKKLVEAA-LDYAR-ENGLKVV-----PTCSYVAKYFRRH 72 (78)
T ss_dssp EEEEEEEE-CSSSTTTHHHHHHHHH-HHHHH-HTT-EEE-----ETSHHHHHHHHH-
T ss_pred EEEEEEEECccccCCcHHHHHHHHH-HHHHH-HCCCEEE-----EECHHHHHHHHhC
Confidence 4555444444443 3444431 34666 6676676 9999999999763
No 6
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=42.25 E-value=24 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.573 Sum_probs=23.0
Q ss_pred ccccccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCC
Q psy16940 121 GVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSP 171 (240)
Q Consensus 121 gv~S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~sp 171 (240)
...-+|.++||.-|- .++|+|++||.+|+|
T Consensus 33 ~i~r~f~TpdN~lV~---------------------V~~~nr~l~r~eR~p 62 (83)
T PF10623_consen 33 KIARRFCTPDNCLVC---------------------VLQDNRFLFRWERAP 62 (83)
T ss_pred HHHhhccCcCCeEEE---------------------EEeCCceEEEEeeCC
Confidence 455678899985433 247999999999998
No 7
>PF08905 DUF1850: Domain of unknown function (DUF1850); InterPro: IPR015001 This entry contains proteins, which are functionally uncharacterised. Some members of this family appear to be miss-annotated as RocC an amino acid transporter from Bacillus subtilis.
Probab=38.21 E-value=44 Score=25.53 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=33.5
Q ss_pred cccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEE-eCC
Q psy16940 124 SQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYR-MHR 169 (240)
Q Consensus 124 S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~-~~~ 169 (240)
-.|+..++-.+...|.+-|||.=+.. -+.+..+.+||.|+++ ++|
T Consensus 17 E~y~v~~~~l~L~~t~~~~~GAGlP~-~~~~~~~~~dG~~~~~~~~~ 62 (91)
T PF08905_consen 17 EVYRVNGGGLVLTETRFQSFGAGLPS-EPGGTFRLEDGWYIIRGINR 62 (91)
T ss_pred EEEEEeCCeEEEEEEEEeeEcCCCCC-CCCCcEEEECCEEEEecCCc
Confidence 34555545467789999999999987 3345678899999998 665
No 8
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.99 E-value=24 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.0
Q ss_pred eccccccCCeeEEEeCCCCC-cHHH
Q psy16940 153 TEYPRFENGRYVYRMHRSPM-CEYM 176 (240)
Q Consensus 153 te~~~~e~gr~~y~~~~spm-Ceym 176 (240)
|.+.=.+.|+=.|.|+|.|. |||=
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCC
Confidence 44445678999999999999 9873
No 9
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=24.52 E-value=75 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=17.6
Q ss_pred hhhhccceeEEEEcCCCceeEEEE
Q psy16940 194 SVLENFSILQVVTNRDTQETLLCT 217 (240)
Q Consensus 194 ~VLenftilqvv~n~~T~E~Ll~~ 217 (240)
.+.+.=.-|++.+|.+|+|+++..
T Consensus 27 ~l~~eDP~l~~~~d~et~e~~l~g 50 (75)
T PF14492_consen 27 KLSEEDPSLRVERDEETGELILSG 50 (75)
T ss_dssp HHHHH-TTSEEEEETTTSEEEEEE
T ss_pred HHHhcCCeEEEEEcchhceEEEEE
Confidence 334444568999999999988864
No 10
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.58 E-value=39 Score=23.12 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.2
Q ss_pred hhhhhcCCCCccchhHhhhcCCC
Q psy16940 5 TEIYDKFPERTGGLKELYDRGPQ 27 (240)
Q Consensus 5 ~qi~dKfP~~k~~l~ely~~gp~ 27 (240)
++|-.|+|+ .|+||+.-|.
T Consensus 20 k~IL~k~Pe----Ik~L~G~dp~ 38 (39)
T PF08557_consen 20 KEILKKHPE----IKKLMGPDPL 38 (39)
T ss_pred HHHHHhChH----HHHHhCCCCC
Confidence 478999999 9999987764
No 11
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=21.20 E-value=68 Score=24.34 Aligned_cols=18 Identities=39% Similarity=0.912 Sum_probs=11.0
Q ss_pred cccccCCeeEEE-eCCCCC
Q psy16940 155 YPRFENGRYVYR-MHRSPM 172 (240)
Q Consensus 155 ~~~~e~gr~~y~-~~~spm 172 (240)
..|+-|+||+|+ |...|+
T Consensus 41 ~srf~N~rF~~eri~gqpl 59 (67)
T PF12218_consen 41 ISRFKNARFVYERIPGQPL 59 (67)
T ss_dssp GGGEES-EEEE-SSTT--E
T ss_pred HHhhccceEEEeecCCCce
Confidence 678999999993 555554
Done!