Query psy16940
Match_columns 240
No_of_seqs 85 out of 101
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:36:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kys_A Transcriptional enhance 100.0 8E-112 3E-116 742.0 18.9 210 28-240 7-219 (219)
2 3l15_A Transcriptional enhance 100.0 4E-110 2E-114 734.5 20.0 211 27-240 9-231 (231)
3 3kys_A Transcriptional enhance 100.0 4.4E-38 1.5E-42 275.8 1.9 143 1-170 49-205 (219)
4 3l15_A Transcriptional enhance 100.0 3.3E-37 1.1E-41 271.7 2.4 143 1-170 52-217 (231)
5 2wwe_A Phosphoinositide-3-kina 17.8 1.6E+02 0.0055 23.6 4.6 41 188-236 17-57 (127)
6 4aez_B MAD2, mitotic spindle c 15.9 1.6E+02 0.0054 25.0 4.4 62 161-230 49-110 (203)
7 2ii1_A Acetamidase; 10172637, 14.6 72 0.0025 28.8 2.0 61 146-206 208-278 (301)
8 2vfx_A Mitotic spindle assembl 13.8 2.1E+02 0.0073 23.9 4.7 60 163-230 53-112 (206)
9 2f4l_A Acetamidase, putative; 13.6 69 0.0024 28.9 1.6 55 152-206 216-280 (297)
10 4fqu_A Putative glutathione tr 11.4 2.6E+02 0.0089 25.0 4.7 62 104-190 9-72 (313)
No 1
>3kys_A Transcriptional enhancer factor TEF-1; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_A 4eaz_A
Probab=100.00 E-value=7.8e-112 Score=742.01 Aligned_cols=210 Identities=70% Similarity=1.127 Sum_probs=196.5
Q ss_pred CceeeEEEeeeccCCcccCccCcceeeeeeee---cccCCccceeeEehhhhccCCCccCcchhhhccCCCCceeeeeee
Q psy16940 28 DAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG---LIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFW 104 (240)
Q Consensus 28 ~affLVkFwAdln~~~iQD~~gafyhvfV~I~---~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~~gp~~affLVKFW 104 (240)
..++|++|+|+++.+ .|+..+.+|+||||+ |+|+||+||+|||||||||||++||||+|||++|||+||||||||
T Consensus 7 ~kLrL~EfsAf~e~~--~d~~~~~~HlfV~i~~~~~~~~dp~lE~Vdi~qI~DKFPe~k~gLkELy~kgp~~aFFLVKfW 84 (219)
T 3kys_A 7 TKLRLVEFSAFLEQQ--RDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFW 84 (219)
T ss_dssp TTEEEEEEEEEEEEE--EETTEEEEEEEEEECC---------CCEEEGGGTGGGSCCSTTCHHHHHHHSCGGGEEEEEEE
T ss_pred cceEEEEEeEEEeec--CCcccccceEEEEcCCCCCCCCCccccEEeHHHhhhhCCCcchhHHHHHhhCCCceEEEEEEE
Confidence 469999999999975 566678999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCcCcccCceeccccccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCCCcHHHHHHHHHHh
Q psy16940 105 ADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLK 184 (240)
Q Consensus 105 AdL~~~~~~~~~~~~ygv~S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~spmCeym~~Fi~kLk 184 (240)
||||+ +++|++|+||||+|+|||+|||+|+|||||||||||||||||||+||+|||||+|||+||||||||+|||||||
T Consensus 85 ADln~-~~~d~~g~fy~v~s~yES~e~m~it~STkVcSFGKqvveKve~e~~~~engr~~yr~~rspmCeYm~~Fi~kLk 163 (219)
T 3kys_A 85 ADLNC-NIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLK 163 (219)
T ss_dssp ECCCC-CCCC-CEEEEEEEEEEEESSCCEEEEEEEEEETTEEEEEEEEEEECEEETTEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EecCC-CCcccCCceeeecccccccCceeEEEeeEEEEcCceeeEeeccccccccCCEEEEEecCCchhHHHHHHHHHHh
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCceeEEEEecCC
Q psy16940 185 RLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVKP 240 (240)
Q Consensus 185 ~Lp~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~q~~vyrLv~~ 240 (240)
+||++|||||||||||||||||||||||||||||||||||++|||||||||||||+
T Consensus 164 ~Lp~~~mMN~VLEnftilqvVtn~~TqE~Llcia~vFEVS~~e~g~qhhvYrLv~~ 219 (219)
T 3kys_A 164 HLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD 219 (219)
T ss_dssp TSSCHHHHHHHHTTEEEEEEEEETTTCCEEEEEEEEEEECCSSSCCEEEEEEEEC-
T ss_pred cCCcHHHHHHHHhhceeEEEEEcCCCceEeEEEEEEEEEecCCCCCceEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999985
No 2
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-110 Score=734.50 Aligned_cols=211 Identities=64% Similarity=1.011 Sum_probs=186.4
Q ss_pred CCceeeEEEeeeccCCcccCccCcceeeeeeee---cccCCccceeeEehhhhccCCCccCcchhhhccCCCCceeeeee
Q psy16940 27 QDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG---LIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKF 103 (240)
Q Consensus 27 ~~affLVkFwAdln~~~iQD~~gafyhvfV~I~---~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~~gp~~affLVKF 103 (240)
...++|++|+|+++.+ .+...+.+|+||||+ |+|+||++|+|||||||||||++||||+|||++|||+|||||||
T Consensus 9 s~rLrL~efSAf~e~~--~~~d~~~rH~fV~i~~~~~~~~dp~lE~vdi~qI~DKFPe~k~gL~ELy~kgP~~aFFLVKf 86 (231)
T 3l15_A 9 TARLQLVEFSAFVEPP--DAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKF 86 (231)
T ss_dssp CSSCEEEEEEEEEEC---------CCEEEEEEEC---------CCEEEGGGGGGGSCCCSTTHHHHHHHSCGGGEEEEEE
T ss_pred ccceEEEEeeeeEeec--CCCccccceEEEEeCCCCCCCCCcccceeeHHHhhhhCCccchHHHHHHhhCCCceEEEEEE
Confidence 4569999999999975 566677899999999 79999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcCcc---------cCceeccccccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCCCcH
Q psy16940 104 WADLNSSSIQDE---------AGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCE 174 (240)
Q Consensus 104 WAdL~~~~~~~~---------~~~~ygv~S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~spmCe 174 (240)
|||||+ +++++ +|+||||+|+|||+|||+|+|||||||||||||||||||+||+|||||+|||+||||||
T Consensus 87 WADln~-~~~d~~~~~~~~~~~~~~ygv~s~yeS~e~m~it~sTkVcSFGKqvvEKvE~e~~~~engr~~yr~~rspmCe 165 (231)
T 3l15_A 87 WADLNW-GPSGEEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCE 165 (231)
T ss_dssp EECCCC-C----------------EEEEEEEEEESSCCEEEEEEEEEETTEEEEEEEEEEECEEETTEEEEEEEEEECCH
T ss_pred EEecCC-CccccccccccccCCCceeeecccccCcCceeEEeeeEEEEccceeeeeeeeccceecCCEEEEEecCCchhH
Confidence 999999 88888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCceeEEEEecCC
Q psy16940 175 YMVNFILKLKRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYKLVKP 240 (240)
Q Consensus 175 ym~~Fi~kLk~Lp~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~q~~vyrLv~~ 240 (240)
||+|||||||+||++|||||||||||||||||||+|||||||||||||||++|||+|||||||||+
T Consensus 166 Ymi~FI~kLk~LP~~~mMNsVLEnftilqvVtn~~TqE~Llcia~vFEVS~~e~g~qhhvYrLv~~ 231 (231)
T 3l15_A 166 YLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRD 231 (231)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHTTEEEEEEEEETTTCCEEEEEEEEEEECCSSSCCEEEEEEEEC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHhhceeEEEEEcCCCceEeEEEEEEEEEecCCCCCceEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 3
>3kys_A Transcriptional enhancer factor TEF-1; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_A 4eaz_A
Probab=100.00 E-value=4.4e-38 Score=275.85 Aligned_cols=143 Identities=39% Similarity=0.704 Sum_probs=127.4
Q ss_pred CcchhhhhhcCCCCccchhHhhhcCCCCceeeEEEeeeccCCcccCccCcceeeeeeee-------------cccCCccc
Q psy16940 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSHIG-------------LIYHSSIN 67 (240)
Q Consensus 1 ~vd~~qi~dKfP~~k~~l~ely~~gp~~affLVkFwAdln~~~iQD~~gafyhvfV~I~-------------~s~~~p~l 67 (240)
+|||||||||||++||||||||++||+|||||||||||||.+ ++|+++++|++.++++ ||||++++
T Consensus 49 ~Vdi~qI~DKFPe~k~gLkELy~kgp~~aFFLVKfWADln~~-~~d~~g~fy~v~s~yES~e~m~it~STkVcSFGKqvv 127 (219)
T 3kys_A 49 SVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCN-IQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVV 127 (219)
T ss_dssp EEEGGGTGGGSCCSTTCHHHHHHHSCGGGEEEEEEEECCCCC-CCC-CEEEEEEEEEEEESSCCEEEEEEEEEETTEEEE
T ss_pred EEeHHHhhhhCCCcchhHHHHHhhCCCceEEEEEEEEecCCC-CcccCCceeeecccccccCceeEEEeeEEEEcCceee
Confidence 589999999999999999999999999999999999999996 8888999999999998 99999999
Q ss_pred eeeEehhhhccCCCccCcchhhhc-cCCCCceeeeeeeeecCCCCcCcccCceeccccccccCCceeEEEeeeeeeeCce
Q psy16940 68 KAVDVTEIYDKFPERTGGLKELYD-RGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQ 146 (240)
Q Consensus 68 E~Vdi~qIydKfP~~kggL~ely~-~gp~~affLVKFWAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~stkv~sfgkq 146 (240)
|+|+.. +|...|| +-+|+ .++|+|.||++|.+.|.. +|++ |.||| ++||+||. |
T Consensus 128 eKve~e-----~~~~eng-r~~yr~~rspmCeYm~~Fi~kLk~--Lp~~----~mMN~---VLEnftil----------q 182 (219)
T 3kys_A 128 EKVETE-----YARFENG-RFVYRINRSPMCEYMINFIHKLKH--LPEK----YMMNS---VLENFTIL----------L 182 (219)
T ss_dssp EEEEEE-----ECEEETT-EEEEEEEEEECCHHHHHHHHHHHT--SSCH----HHHHH---HHTTEEEE----------E
T ss_pred Eeeccc-----cccccCC-EEEEEecCCchhHHHHHHHHHHhc--CCcH----HHHHH---HHhhceeE----------E
Confidence 999987 4666677 57777 788999999999999999 7877 99999 99999999 9
Q ss_pred eeeeeeeccccccCCeeEEEeCCC
Q psy16940 147 VVEKVETEYPRFENGRYVYRMHRS 170 (240)
Q Consensus 147 vveKvEte~~~~e~gr~~y~~~~s 170 (240)
||++.+|.+.. -.-.|+|....|
T Consensus 183 vVtn~~TqE~L-lcia~vFEVS~~ 205 (219)
T 3kys_A 183 VVTNRDTQETL-LCMACVFEVSNS 205 (219)
T ss_dssp EEEETTTCCEE-EEEEEEEEECCS
T ss_pred EEEcCCCceEe-EEEEEEEEEecC
Confidence 99999997644 566677766654
No 4
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=271.65 Aligned_cols=143 Identities=41% Similarity=0.681 Sum_probs=121.0
Q ss_pred CcchhhhhhcCCCCccchhHhhhcCCCCceeeEEEeeeccCCcccCc---------cCcceeeeeeee------------
Q psy16940 1 AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDE---------AGAFYGVNSHIG------------ 59 (240)
Q Consensus 1 ~vd~~qi~dKfP~~k~~l~ely~~gp~~affLVkFwAdln~~~iQD~---------~gafyhvfV~I~------------ 59 (240)
+|||||||||||++||||||||++||+|||||||||||||.+ ++++ ++++|++.++++
T Consensus 52 ~vdi~qI~DKFPe~k~gL~ELy~kgP~~aFFLVKfWADln~~-~~d~~~~~~~~~~~~~~ygv~s~yeS~e~m~it~sTk 130 (231)
T 3l15_A 52 SVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWG-PSGEEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSK 130 (231)
T ss_dssp EEEGGGGGGGSCCCSTTHHHHHHHSCGGGEEEEEEEECCCCC-----------------EEEEEEEEEESSCCEEEEEEE
T ss_pred eeeHHHhhhhCCccchHHHHHHhhCCCceEEEEEEEEecCCC-ccccccccccccCCCceeeecccccCcCceeEEeeeE
Confidence 589999999999999999999999999999999999999996 7777 789999999998
Q ss_pred -cccCCccceeeEehhhhccCCCccCcchhhhc-cCCCCceeeeeeeeecCCCCcCcccCceeccccccccCCceeEEEe
Q psy16940 60 -LIYHSSINKAVDVTEIYDKFPERTGGLKELYD-RGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITCS 137 (240)
Q Consensus 60 -~s~~~p~lE~Vdi~qIydKfP~~kggL~ely~-~gp~~affLVKFWAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~s 137 (240)
||||++++|+|+.. +|.-.|| +-+|+ .++|+|.||++|.+.|+. +|++ |+||| ++||+||.
T Consensus 131 VcSFGKqvvEKvE~e-----~~~~eng-r~~yr~~rspmCeYmi~FI~kLk~--LP~~----~mMNs---VLEnftil-- 193 (231)
T 3l15_A 131 VCSFGKQVVEKVETE-----RAQLEDG-RFVYRLLRSPMCEYLVNFLHKLRQ--LPER----YMMNS---VLENFTIL-- 193 (231)
T ss_dssp EEETTEEEEEEEEEE-----ECEEETT-EEEEEEEEEECCHHHHHHHHHHTT--CSCH----HHHHH---HHTTEEEE--
T ss_pred EEEccceeeeeeeec-----cceecCC-EEEEEecCCchhHHHHHHHHHHhc--CCcH----HHHHH---HHhhceeE--
Confidence 99999999999887 4555566 57777 788999999999999999 7877 99999 99999999
Q ss_pred eeeeeeCceeeeeeeeccccccCCeeEEEeCCC
Q psy16940 138 TKVCSFGKQVVEKVETEYPRFENGRYVYRMHRS 170 (240)
Q Consensus 138 tkv~sfgkqvveKvEte~~~~e~gr~~y~~~~s 170 (240)
|||++.+|.+-. -.-.|||.+..|
T Consensus 194 --------qvVtn~~TqE~L-lcia~vFEVS~~ 217 (231)
T 3l15_A 194 --------QVVTNRDTQELL-LCTAYVFEVSTS 217 (231)
T ss_dssp --------EEEEETTTCCEE-EEEEEEEEECCS
T ss_pred --------EEEEcCCCceEe-EEEEEEEEEecC
Confidence 999999996644 456666666654
No 5
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=17.78 E-value=1.6e+02 Score=23.59 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=30.1
Q ss_pred chhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCceeEEEE
Q psy16940 188 EKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGAQHHIYK 236 (240)
Q Consensus 188 ~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~q~~vyr 236 (240)
+.|.+|....+-||+-. ..+ .-..||++|..++ |...+|||
T Consensus 17 ~~~~~~~~i~~~~v~~~-~k~------~~~~Yvi~V~~sd-~~~~~~~r 57 (127)
T 2wwe_A 17 NLYFQSMSIERATILGF-SKK------SSNLYLIQVTHSN-NETSLTEK 57 (127)
T ss_dssp CCCSCSSSEEEEEEEEE-ETT------EEEEEEEEEEETT-SCEEEEEE
T ss_pred eeeecCCcEEEEEEEEE-Eec------ccEEEEEEEEEeC-CCeEEEEE
Confidence 45667777777787776 333 4466999999997 56788887
No 6
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=15.90 E-value=1.6e+02 Score=24.99 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=39.8
Q ss_pred CeeEEEeCCCCCcHHHHHHHHHHhcCCchhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCc
Q psy16940 161 GRYVYRMHRSPMCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGA 230 (240)
Q Consensus 161 gr~~y~~~~spmCeym~~Fi~kLk~Lp~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~ 230 (240)
|--++.-..-.+|+|+.+.+..++.+ +.+.-|+ .+--++.|.+|+|+| =-|+|+|+..+++.
T Consensus 49 ~l~v~~sr~p~l~~YI~~~l~~v~~w----L~~g~v~--klvlvI~~~~t~~~l--Er~~Fdv~~~~~~~ 110 (203)
T 4aez_B 49 GLNMLVSVDEEVKTYIRKIVSQLHKW----MFAKKIQ--KLILVITSKCSGEDL--ERWQFNVEMVDTAD 110 (203)
T ss_dssp TEEEEEECCHHHHHHHHHHHHHHHHH----HHTTCEE--EEEEEEEETTTCCEE--EEEEEEEEECC---
T ss_pred CccceeecCHHHHHHHHHHHHHHHHH----HHhCCce--EEEEEEEcCCCCceE--EEEEEeccccCccc
Confidence 33455333334899999999988763 1222233 344688999999998 56888888766553
No 7
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=14.61 E-value=72 Score=28.76 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=47.5
Q ss_pred eeeeeeeeccccccCCeeEEEeCCCC--------CcHHHHHHHHHHhcC--CchhhhhhhhhccceeEEEE
Q psy16940 146 QVVEKVETEYPRFENGRYVYRMHRSP--------MCEYMVNFILKLKRL--PEKYMMNSVLENFSILQVVT 206 (240)
Q Consensus 146 qvveKvEte~~~~e~gr~~y~~~~sp--------mCeym~~Fi~kLk~L--p~~~mmn~VLenftilqvv~ 206 (240)
.|+.+.....|++|...+.+-+-.++ =|.-|+.|+.+...| .+-||+=|+-=+|-|-|||-
T Consensus 208 ~viK~~~l~~P~~et~~~~~~~G~~~dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a~d~~IsqvVd 278 (301)
T 2ii1_A 208 NVKKERMFPLPALKTDTHFMTIASAETLDAAAVQATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVN 278 (301)
T ss_dssp EEESSCCSCSSEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHCEEEEEESSS
T ss_pred EEECCCCCCCCEEECCCcEEEEEECCCHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhhcCcEEEEecC
Confidence 33444446689999888777665544 377899999999998 56789999999999999995
No 8
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=13.85 E-value=2.1e+02 Score=23.90 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=41.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHhcCCchhhhhhhhhccceeEEEEcCCCceeEEEEEEEEEeeeCCCCc
Q psy16940 163 YVYRMHRSPMCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVSTSEHGA 230 (240)
Q Consensus 163 ~~y~~~~spmCeym~~Fi~kLk~Lp~~~mmn~VLenftilqvv~n~~T~E~Ll~~a~vFeVs~~~~g~ 230 (240)
-++.-..-.+|+|+.+.+..|+.. +.+..|+ .+--++.|.+|+|+|=. |+|+++...++.
T Consensus 53 ~v~~sr~p~l~~YI~~~l~~l~~~----L~~g~v~--klvlvI~~~~~~~~lEr--~~Fd~~~~~~~~ 112 (206)
T 2vfx_A 53 TLLVTTDLELIKYLNNVVEQLKDW----LYKSSVQ--KLVVVISNIESGEVLER--WQFDIESDKTAK 112 (206)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHH----HHTTCEE--EEEEEEEETTTCCEEEE--EEEEEEECTTC-
T ss_pred eeeEecCHHHHHHHHHHHHHHHHH----HHhCcee--EEEEEEEeCCCCceEEE--EEEEeeccCCcc
Confidence 355544556799999998888763 2233344 34468899999998765 899998876654
No 9
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=13.57 E-value=69 Score=28.93 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=45.2
Q ss_pred eeccccccCCeeEEEeCCCC--------CcHHHHHHHHHHhcC--CchhhhhhhhhccceeEEEE
Q psy16940 152 ETEYPRFENGRYVYRMHRSP--------MCEYMVNFILKLKRL--PEKYMMNSVLENFSILQVVT 206 (240)
Q Consensus 152 Ete~~~~e~gr~~y~~~~sp--------mCeym~~Fi~kLk~L--p~~~mmn~VLenftilqvv~ 206 (240)
....|++|.+.+.+-+-.++ =|.-|+.|+.+...| .+-||+=|+-=+|-|-|||-
T Consensus 216 ~l~~P~~et~~~~~~~G~~~dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a~d~~IsqvVd 280 (297)
T 2f4l_A 216 EIKWPVVETNDAYYIIVSLPDIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLSVDVGISQLVN 280 (297)
T ss_dssp CCSSCEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHCEEEEEESSS
T ss_pred CCCCCEEECCCcEEEEEECCCHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhhcCcEEEEEcC
Confidence 46689999888777665554 378899999999998 56789999999999999995
No 10
>4fqu_A Putative glutathione transferase; glutathionyl-hydroquinone reductases, oxidoredu; 3.00A {Sphingobium chlorophenolicum}
Probab=11.44 E-value=2.6e+02 Score=25.00 Aligned_cols=62 Identities=27% Similarity=0.453 Sum_probs=38.8
Q ss_pred eeecCCCCcCcccCceeccccccccCCceeEEEeeeeeeeCceeeeeeeeccccccCCeeEEEeCCCCCcHH--HHHHHH
Q psy16940 104 WADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEY--MVNFIL 181 (240)
Q Consensus 104 WAdL~~~~~~~~~~~~ygv~S~yes~E~~~it~stkv~sfgkqvveKvEte~~~~e~gr~~y~~~~spmCey--m~~Fi~ 181 (240)
|.+-=. +..+..|+|=.-.|+|..-- +...+- |-|| |||-.|..||+ =+....
T Consensus 9 w~~~w~-~~~~~~g~f~r~~s~fr~~i---------------------~~~~~~-e~gR--y~Ly~s~~CPwAhR~~I~r 63 (313)
T 4fqu_A 9 WRDAWY-DTKSSGGRFVRKESQYRGGL---------------------DAGFRG-EPGR--YHLYAGFACPWAHRVLIMR 63 (313)
T ss_dssp EECSCS-CSSCSSSSCCCCSCCCBCSC---------------------SSSCCC-CTTT--EEEEECSSCHHHHHHHHHH
T ss_pred eccccc-cCCCCCCceeCCcccccCCC---------------------CCCCCC-CCCc--EEEEEecCCcHHHHHHHHH
Confidence 666323 34566777766666554321 123333 6788 56667788999 566788
Q ss_pred HHhcCCchh
Q psy16940 182 KLKRLPEKY 190 (240)
Q Consensus 182 kLk~Lp~~~ 190 (240)
+||.|.+.-
T Consensus 64 ~lKGLe~~I 72 (313)
T 4fqu_A 64 ALKGLEEMI 72 (313)
T ss_dssp HHTTCTTTS
T ss_pred HHcCCCcce
Confidence 999997543
Done!