Query psy16940
Match_columns 240
No_of_seqs 85 out of 101
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmta_ d.108.1.1 (A:) Hypothe 32.9 7.9 0.00058 27.3 1.5 23 154-182 59-82 (95)
2 d1r57a_ d.108.1.1 (A:) Hypothe 24.6 14 0.00099 25.8 1.5 33 143-182 52-84 (102)
3 d1lrza2 d.108.1.4 (A:1-165) Me 22.3 22 0.0016 26.8 2.5 27 160-186 65-96 (165)
4 d2q4ma1 d.23.1.2 (A:24-212) Hy 18.9 61 0.0044 24.4 4.5 23 122-144 5-27 (189)
5 d2bv3a4 d.58.11.1 (A:404-478) 15.3 42 0.0031 22.2 2.3 24 193-216 26-49 (75)
6 d1e0ba_ b.34.13.2 (A:) Heteroc 13.1 16 0.0011 24.5 -0.5 23 67-92 37-59 (61)
7 d1ne9a1 d.108.1.4 (A:1-164) Pe 12.3 73 0.0053 23.6 3.2 25 161-185 67-96 (164)
8 d1of9a_ a.64.1.4 (A:) Ameobapo 12.3 43 0.0031 21.6 1.6 27 172-198 7-33 (77)
9 d2f4la1 b.23.3.1 (A:1-283) Put 12.3 29 0.0021 29.0 0.9 54 153-206 205-268 (283)
10 d2dy1a4 d.58.11.1 (A:378-454) 12.0 61 0.0044 21.3 2.4 22 195-216 28-49 (77)
No 1
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.85 E-value=7.9 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=17.5
Q ss_pred ccccccCCeeEEEeCCCCCcHHHHH-HHHH
Q psy16940 154 EYPRFENGRYVYRMHRSPMCEYMVN-FILK 182 (240)
Q Consensus 154 e~~~~e~gr~~y~~~~spmCeym~~-Fi~k 182 (240)
+++| ++|.-+- |.|+|+.. |+.|
T Consensus 59 ~~ar-~~g~kV~-----P~Cpyv~~~~~~k 82 (95)
T d1xmta_ 59 EHAS-SHSISII-----PSCSYVSDTFLPR 82 (95)
T ss_dssp HHHH-HTTCEEE-----ECSHHHHHTHHHH
T ss_pred HHHH-HCCCEEE-----EeCHHHHHHHHHh
Confidence 4566 5677676 99999975 9876
No 2
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=24.64 E-value=14 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred eCceeeeeeeeccccccCCeeEEEeCCCCCcHHHHHHHHH
Q psy16940 143 FGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILK 182 (240)
Q Consensus 143 fgkqvveKvEte~~~~e~gr~~y~~~~spmCeym~~Fi~k 182 (240)
+|+++++.+.- ++|- +|.-+. |+|+|.+.|+.|
T Consensus 52 ig~~Lv~~~l~-~Ar~-~g~kvv-----p~c~y~~~~~~k 84 (102)
T d1r57a_ 52 VGKKLLKAVVE-HARE-NNLKII-----ASCSFAKHMLEK 84 (102)
T ss_dssp THHHHHHHHHH-HHHH-HTCEEE-----ESSHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHH-CCCEEE-----EecHhHHHHHHh
Confidence 35566666443 6774 455566 999999999987
No 3
>d1lrza2 d.108.1.4 (A:1-165) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=22.34 E-value=22 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=19.9
Q ss_pred CCeeEEEeCCCCCcHH-----HHHHHHHHhcC
Q psy16940 160 NGRYVYRMHRSPMCEY-----MVNFILKLKRL 186 (240)
Q Consensus 160 ~gr~~y~~~~spmCey-----m~~Fi~kLk~L 186 (240)
.|..++.+.|.|+|+| +..|+..|+.+
T Consensus 65 ~g~~~~y~prGPv~d~~d~~ll~~~l~~L~~~ 96 (165)
T d1lrza2 65 KVFKYFYSNRGPVIDYENQELVHFFFNELSKY 96 (165)
T ss_dssp TTEEEEECTTCCEECTTCHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCccCccCHHHHHHHHHHHHHH
Confidence 3445577999999976 56678888763
No 4
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.93 E-value=61 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=13.4
Q ss_pred cccccccCCceeEEEeeeeeeeC
Q psy16940 122 VNSQYESSDSMTITCSTKVCSFG 144 (240)
Q Consensus 122 v~S~yes~E~~~it~stkv~sfg 144 (240)
|..+|=+.+.+++++.-|+.||+
T Consensus 5 v~~~~~~~~~~~L~V~~K~~~~~ 27 (189)
T d2q4ma1 5 VDPKYCAPYPIDMAIVRKMMSLT 27 (189)
T ss_dssp SCGGGBCSSCEEEEEECC-----
T ss_pred EChhHccCCceEEEEEEeeeeee
Confidence 45667777777888888888773
No 5
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=15.32 E-value=42 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=15.5
Q ss_pred hhhhhccceeEEEEcCCCceeEEE
Q psy16940 193 NSVLENFSILQVVTNRDTQETLLC 216 (240)
Q Consensus 193 n~VLenftilqvv~n~~T~E~Ll~ 216 (240)
+.+-+.=.-|++-+|.+|+|++|.
T Consensus 26 ~~L~~EDPsl~~~~d~et~e~il~ 49 (75)
T d2bv3a4 26 ARLAEESPTFSVSTHPETGSTIIS 49 (75)
T ss_dssp ------CCSCEEEECSSSSCEEEE
T ss_pred HHHHhhCCceEEEEcCcCCcEEEe
Confidence 334444456799999999999975
No 6
>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
Probab=13.12 E-value=16 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.0
Q ss_pred ceeeEehhhhccCCCccCcchhhhcc
Q psy16940 67 NKAVDVTEIYDKFPERTGGLKELYDR 92 (240)
Q Consensus 67 lE~Vdi~qIydKfP~~kggL~ely~~ 92 (240)
--.+++.++|.|.|.+ +=++|+.
T Consensus 37 ks~~~~~~~Y~KCPqK---mL~fYE~ 59 (61)
T d1e0ba_ 37 ISHHPSTITNKKCPQK---MLQFYES 59 (61)
T ss_dssp EEEEEHHHHHHHSHHH---HHHHHHT
T ss_pred EEEeeHHHHHHHhhHH---HHHHHHh
Confidence 3678999999999986 5566663
No 7
>d1ne9a1 d.108.1.4 (A:1-164) Peptidyltransferase FemX {Weissella viridescens [TaxId: 1629]}
Probab=12.33 E-value=73 Score=23.65 Aligned_cols=25 Identities=4% Similarity=0.151 Sum_probs=18.5
Q ss_pred CeeEEEeCCCCCcHH-----HHHHHHHHhc
Q psy16940 161 GRYVYRMHRSPMCEY-----MVNFILKLKR 185 (240)
Q Consensus 161 gr~~y~~~~spmCey-----m~~Fi~kLk~ 185 (240)
|..++.+.|.|+|+| +..|+..|++
T Consensus 67 g~~~~y~prGPv~d~~d~~ll~~~~~~l~~ 96 (164)
T d1ne9a1 67 DKKFAYASKGPVMDVTDVDLLDRLVDEAVK 96 (164)
T ss_dssp SSEEEEETTCCBSCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCCcCCHHHHHHHHHHHHH
Confidence 556777999999954 5567777764
No 8
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=12.31 E-value=43 Score=21.58 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHHhcCCchhhhhhhhhc
Q psy16940 172 MCEYMVNFILKLKRLPEKYMMNSVLEN 198 (240)
Q Consensus 172 mCeym~~Fi~kLk~Lp~~~mmn~VLen 198 (240)
+|+.+++.+++|..=+.+..+...|++
T Consensus 7 ~C~~~v~~~~~l~~~~t~~~I~~~l~~ 33 (77)
T d1of9a_ 7 LCTGLINTLENLLTTKGADKVKDYISS 33 (77)
T ss_dssp HHHHHHHHHHHHCSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 578888888887654444455555554
No 9
>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]}
Probab=12.26 E-value=29 Score=28.97 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=41.8
Q ss_pred eccccccCCeeEEEeCCC-C-------CcHHHHHHHHHHhcC--CchhhhhhhhhccceeEEEE
Q psy16940 153 TEYPRFENGRYVYRMHRS-P-------MCEYMVNFILKLKRL--PEKYMMNSVLENFSILQVVT 206 (240)
Q Consensus 153 te~~~~e~gr~~y~~~~s-p-------mCeym~~Fi~kLk~L--p~~~mmn~VLenftilqvv~ 206 (240)
...|+.|+....+-+-.. + -|..|++|+.+...| .+-||+=|+-=||-|-|||.
T Consensus 205 ~~~P~~et~~~~~~~g~~~~L~~A~r~A~~~mi~~l~~~~gl~~~eAy~L~S~a~d~~I~qvVd 268 (283)
T d2f4la1 205 IKWPVVETNDAYYIIVSLPDIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLSVDVGISQLVN 268 (283)
T ss_dssp CSSCEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHCEEEEEESSS
T ss_pred ccCCcccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhhheeCceeeEEEC
Confidence 457888876666654222 2 277899999999998 56789999999999999994
No 10
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=12.00 E-value=61 Score=21.31 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=16.6
Q ss_pred hhhccceeEEEEcCCCceeEEE
Q psy16940 195 VLENFSILQVVTNRDTQETLLC 216 (240)
Q Consensus 195 VLenftilqvv~n~~T~E~Ll~ 216 (240)
+.++=.-|++-+|.+|+|+++.
T Consensus 28 L~~eDPsl~v~~d~et~e~vl~ 49 (77)
T d2dy1a4 28 LLEEDPSLKLERQEETGELLLW 49 (77)
T ss_dssp HHHHCTTSEEEECTTTCCEEEE
T ss_pred HHhhcCeEEEEEcCCchhheEe
Confidence 3334445799999999999875
Done!