RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16940
         (240 letters)



>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family. 
          Length = 424

 Score =  270 bits (692), Expect = 1e-89
 Identities = 96/180 (53%), Positives = 115/180 (63%), Gaps = 17/180 (9%)

Query: 69  AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDE---------AGAF 119
             D+ +  DKFPE   GLKEL D GP  AF L+K W DL + +I D          + +F
Sbjct: 246 LEDIRQWRDKFPELKSGLKELMDDGPPGAFLLIKLWLDLANPNIGDAPISSQMENWSCSF 305

Query: 120 YGVN---SQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVYRMHRSPMCEYM 176
           YG     SQYES ++MT  CSTKV + GKQV EKV TEY   E GR+ YR HRS + EY 
Sbjct: 306 YGYENGQSQYESYENMTKPCSTKVLTQGKQVAEKVGTEYAADERGRFFYR-HRSAVQEYR 364

Query: 177 VNFILKLKRLPEKYMMNSVLENFSILQVVTN----RDTQETLLCTAYMFAVSTSEHGAQH 232
            NFI KL+RLPEKYMMNSV+   +I QV++N    RD+QE  LC AY+F VST EHGAQH
Sbjct: 365 ANFIHKLRRLPEKYMMNSVVGTTTIRQVISNPPEHRDSQEPPLCLAYVFEVSTQEHGAQH 424



 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 1   AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQDE---------AGAF 51
             D+ +  DKFPE   GLKEL D GP  AF L+K W DL + +I D          + +F
Sbjct: 246 LEDIRQWRDKFPELKSGLKELMDDGPPGAFLLIKLWLDLANPNIGDAPISSQMENWSCSF 305

Query: 52  YGVNS 56
           YG  +
Sbjct: 306 YGYEN 310


>gnl|CDD|233411 TIGR01431, adm_rel, adenosine deaminase-related growth factor.
           Members of this family have been described as secreted
           proteins with growth factor activity and regions of
           adenosine deaminase homology in insects, mollusks, and
           vertebrates.
          Length = 479

 Score = 30.2 bits (68), Expect = 0.93
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 145 KQVVEKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLPEKY 190
           K+V EK   E+P F   + +Y   RS   E +  +I     L  KY
Sbjct: 241 KEVTEKFVEEHPDFIGIKIIYSDLRSKDVEEIAEYIKMAMGLRIKY 286


>gnl|CDD|111707 pfam02838, Glyco_hydro_20b, Glycosyl hydrolase family 20, domain 2.
            This domain has a zincin-like fold.
          Length = 131

 Score = 28.1 bits (63), Expect = 2.3
 Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 4/33 (12%)

Query: 38  DLNSSSIQ----DEAGAFYGVNSHIGLIYHSSI 66
            + S  I        GA  G+ +   LI + S 
Sbjct: 85  SIKSDGIVIKANTVWGALRGLETLSQLIVYDSE 117


>gnl|CDD|176539 cd08597, PI-PLCc_PRIP_metazoa, Catalytic domain of metazoan
           phospholipase C related, but catalytically inactive
           protein.  This family corresponds to the catalytic
           domain present in metazoan phospholipase C related, but
           catalytically inactive proteins (PRIP), which belong to
           a group of novel Inositol 1,4,5-trisphosphate (InsP3)
           binding protein. PRIP has a primary structure and domain
           architecture, incorporating a pleckstrin homology (PH)
           domain, an array of EF hands, a PLC catalytic core
           domain with highly conserved X- and Y-regions split by a
           linker sequence, and a C-terminal C2 domain, similar to
           phosphoinositide-specific phospholipases C (PI-PLC, EC
           3.1.4.11)-delta isoforms. Due to replacement of critical
           catalytic residues, PRIP do not have PLC enzymatic
           activity. PRIP consists of two subfamilies,
           PRIP-1(previously known as p130 or PLC-1), which is
           predominantly expressed in the brain, and PRIP-2
           (previously known as PLC-2), which exhibits a relatively
           ubiquitous expression. Experiments show both, PRIP-1 and
           PRIP-2, are involved in InsP3-mediated calcium signaling
           pathway and GABA(A)receptor-mediated signaling pathway.
           In addition, PRIP-2 acts as a negative regulator of
           B-cell receptor signaling and immune responses.
          Length = 260

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 131 SMTITCSTKVCSFGKQVVEKVETEYPR---FENGRYVYRMHRSPM 172
           S       +VCSF + +  ++  E+P      N +++ R++ SPM
Sbjct: 175 SAQNQKYWEVCSFSENLARRLANEFPEDFVNYNKKFLSRVYPSPM 219


>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine
           S-methyltransferase/5,10-methylenetetrahydrofolate
           reductase protein; Reviewed.
          Length = 612

 Score = 27.5 bits (62), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 155 YPRFENGRYVYRMHRSPMCEYMVNFILKLKRL 186
            P + +GRYVY    +P  EY   + L+    
Sbjct: 235 LPEYVDGRYVYS--ANP--EYFAEYALEFVEQ 262


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,887,949
Number of extensions: 1082112
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 9
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)