RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16940
(240 letters)
>3kys_A Transcriptional enhancer factor TEF-1; immunoglobulin-like fold,
activator, disease mutation, DNA- binding, nucleus,
phosphoprotein, transcription; 2.80A {Homo sapiens} PDB:
3jua_A
Length = 219
Score = 259 bits (662), Expect = 4e-88
Identities = 150/211 (71%), Positives = 172/211 (81%), Gaps = 6/211 (2%)
Query: 32 LVKFWADLNSSSIQDEAGAFYGVNSHIGLIYHSSIN---KAVDVTEIYDKFPERTGGLKE 88
LV+F A L D V HIG HS + ++VD+ +IYDKFPE+ GGLKE
Sbjct: 11 LVEFSAFLEQQRDPDSYNKHLFV--HIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKE 68
Query: 89 LYDRGPQDAFFLVKFWADLNSSSIQDEAGAFYGVNSQYESSDSMTITCSTKVCSFGKQVV 148
L+ +GPQ+AFFLVKFWADLN + IQD+AGAFYGV SQYESS++MT+TCSTKVCSFGKQVV
Sbjct: 69 LFGKGPQNAFFLVKFWADLNCN-IQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVV 127
Query: 149 EKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTNR 208
EKVETEY RFENGR+VYR++RSPMCEYM+NFI KLK LPEKYMMNSVLENF+IL VVTNR
Sbjct: 128 EKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNR 187
Query: 209 DTQETLLCTAYMFAVSTSEHGAQHHIYKLVK 239
DTQETLLC A +F VS SEHGAQHHIY+LVK
Sbjct: 188 DTQETLLCMACVFEVSNSEHGAQHHIYRLVK 218
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding,
nucleus, transcriptio regulation; HET: MSE GOL; 2.00A
{Homo sapiens}
Length = 231
Score = 256 bits (655), Expect = 5e-87
Identities = 132/194 (68%), Positives = 154/194 (79%), Gaps = 11/194 (5%)
Query: 57 HIGLIYHSSINK---AVDVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQ 113
HI S +VDV +IYDKFPE+ GGL+ELYDRGP AFFLVKFWADLN
Sbjct: 37 HISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSG 96
Query: 114 DEA--------GAFYGVNSQYESSDSMTITCSTKVCSFGKQVVEKVETEYPRFENGRYVY 165
+EA G FYGV+SQYES + MT+TCS+KVCSFGKQVVEKVETE + E+GR+VY
Sbjct: 97 EEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVY 156
Query: 166 RMHRSPMCEYMVNFILKLKRLPEKYMMNSVLENFSILQVVTNRDTQETLLCTAYMFAVST 225
R+ RSPMCEY+VNF+ KL++LPE+YMMNSVLENF+ILQVVTNRDTQE LLCTAY+F VST
Sbjct: 157 RLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVST 216
Query: 226 SEHGAQHHIYKLVK 239
SE GAQHHIY+LV+
Sbjct: 217 SERGAQHHIYRLVR 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-08
Identities = 41/245 (16%), Positives = 86/245 (35%), Gaps = 69/245 (28%)
Query: 6 EIYDKFPERTGGLKELYDRGPQDAFFLVKFWADLNSSSIQD--------EAGAFYGVNS- 56
++Y +++++R D F + SI D F G
Sbjct: 1634 DLYKTSKA----AQDVWNRA--DNHFKDTY-----GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 57 -----HIGLIYHSSINKAVDVTEIYDKFPERTGGLKELYDRGPQD----------AFFLV 101
+ +I+ + ++ + +I F E R + A L+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKI---FKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 102 KF--WADLNSSSIQDEAGAFYGVNS--QYES-----SDSMTITCSTKVCSF-GKQVVEKV 151
+ + DL S + F G +S +Y + +D M+I +V + G +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAG-HSLGEY-AALASLADVMSIESLVEVVFYRGM----TM 1793
Query: 152 ETEYPRFENGRYVYRMHR-SP------MCEYMVNFILKLKRLPEKYMMNSVLE--NFSI- 201
+ PR E GR Y M +P + + ++ ++R+ ++ ++E N+++
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKR--TGWLVEIVNYNVE 1849
Query: 202 -LQVV 205
Q V
Sbjct: 1850 NQQYV 1854
Score = 32.3 bits (73), Expect = 0.15
Identities = 50/281 (17%), Positives = 81/281 (28%), Gaps = 92/281 (32%)
Query: 5 TEIYDKFPERTGGLKELYDRGPQDAFFLVKFWADL--NSSSIQDEAGAFY--GVNSH--- 57
T+ Y F E L++LY L+KF A+ +A + G+N
Sbjct: 166 TDDY--FEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 58 ---------------------IGLI----YHSSINKA-VDVTEIYDKFPERTGGLKELYD 91
IG+I Y + E+ TG + L
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV- 278
Query: 92 RGPQDAFFL--VKFWADLNSSSIQDEAGAFY-GVNSQYESSDSMTITCSTKVCSFGKQVV 148
A + W S + F+ GV E+ + ++ S + +
Sbjct: 279 ----TAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSIL-----EDSL 328
Query: 149 EKVETEYPRFENGRYVYRMHRSPMCEYMVNFILKLKRLP----EKYM--MNSVLENFSIL 202
E E P SPM L + L + Y+ NS L +
Sbjct: 329 ENNEGV-P-------------SPM--------LSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 203 QVVTNRDTQETLLCTAYMFAVS---TSEHGAQHHIYKLVKP 240
++ +L+ A VS S +G + K P
Sbjct: 367 EI--------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.64
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 88/224 (39%)
Query: 31 FLVKFWADLNSSSIQDEAGAFYGVNSHIGLIYHSSINKAVDVTEIYDKFPERTGGLKELY 90
F F + + +QD SI ++ I + G L+
Sbjct: 25 FEDAFVDNFDCKDVQD---------------MPKSILSKEEIDHII-MSKDAVSGTLRLF 68
Query: 91 DRGPQDAFFLVKFWADLNSSSIQDEAGAFYG--VNSQYESSDSMTITCSTKVCSFGKQVV 148
L K +Q F + Y+ F ++
Sbjct: 69 W------TLLSK-----QEEMVQ----KFVEEVLRINYK---------------F---LM 95
Query: 149 EKVETEY--PRFENGRYVY---RMHRS--PMCEYMVN---FILKLKRL-----PEKYM-- 191
++TE P Y+ R++ +Y V+ LKL++ P K +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 192 --M---------NSVLENFSILQV---------VTNRDTQETLL 215
+ V ++ + + N ++ ET+L
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 28.7 bits (64), Expect = 1.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 143 FGKQVVEKVETEYPRFENGRYVYRMHR 169
F ++ YP +GR + R R
Sbjct: 225 FLADYTRRIAAAYPPMADGRLLLRFPR 251
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Length = 226
Score = 28.2 bits (62), Expect = 2.0
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 54 VNSHIGLIYHSSINKAV---DVTEIYDKFPERTGGLKELYDRGPQDAFFLVKFW 104
V+ + + +NK T++ + E T L + +D L+KFW
Sbjct: 160 VDQALVALKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILGASEEDNVKLLKFW 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,599,136
Number of extensions: 203817
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 12
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)