RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16940
         (240 letters)



>d1nowa2 d.92.2.1 (A:55-199) beta-hexosaminidase B, N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 145

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 46  DEAGAFYGVNSHIGLIYHSSINK-AVDVTEIYDK 78
              GA  G+ +   L+Y  S     ++ + I D 
Sbjct: 110 RVWGALRGLETFSQLVYQDSYGTFTINESTIIDS 143


>d2cbia3 d.92.2.3 (A:41-178) Hyaluronidase N-terminal domain
           {Clostridium perfringens [TaxId: 1502]}
          Length = 138

 Score = 25.5 bits (55), Expect = 4.7
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 46  DEAGAFYGVNSHIGLIYHSSINKAVDVTEIYDK 78
           D  G FYGV +   L+  S+I +      I D 
Sbjct: 108 DGDGTFYGVQTFKQLVKESNIPEV----NITDY 136


>d2gjxa2 d.92.2.1 (A:23-166) beta-hexosaminidase A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 25.3 bits (54), Expect = 4.8
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 46  DEAGAFYGVNSHIGLIYHSSINK-AVDVTEIYDK 78
              GA  G+ +   L++ S+     ++ TEI D 
Sbjct: 109 TVWGALRGLETFSQLVWKSAEGTFFINKTEIEDF 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 867,208
Number of extensions: 37917
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)