BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16945
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 11/337 (3%)
Query: 9 LYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSK 68
++RHGDR+PI+ +P DP K +S WP G GQLT +G QHY+LG++ +RYR + +SY
Sbjct: 9 VFRHGDRSPIDTFPTDPIKESS-WPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKH 67
Query: 69 ENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMK-K 127
E VY+ STDVDRTLMSA NLA FPP+G +W+P + WQPIPVHT+P D++L + +
Sbjct: 68 EQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFR 127
Query: 128 PCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVETITDL-EFIHNTLFIEEIN 186
CP++ + + + S E Q+ L Y+ + + +G + + + +++ L+ E ++
Sbjct: 128 NCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVH 187
Query: 187 NLTLPEW----THPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXXXXX 242
N TLP W T E + I + RL+ G LV +I+ HM
Sbjct: 188 NFTLPSWATEDTMTKLRELSELSLLSLYGI-HKQKEKSRLQGGVLVNEILNHMKRATQIP 246
Query: 243 XXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNSTSV 302
I +YSAHDTTV+ L L++++ PPY + + EL+ + EY+V + Y+N T
Sbjct: 247 SYKKLI-MYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQH 305
Query: 303 PPYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVAC 339
PY L +PGC CPL+ F L V+ D W C
Sbjct: 306 EPYPLMLPGCSPSCPLERFAELVGPVIPQD--WSTEC 340
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 11/337 (3%)
Query: 9 LYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSK 68
++RHGDR+PI+ +P DP K +S WP G GQLT +G QHY+LG++ +RYR + +SY
Sbjct: 9 VFRHGDRSPIDTFPTDPIKESS-WPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKH 67
Query: 69 ENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMK-K 127
E VY+ STDVDRTLMSA NLA FPP+G +W+P + WQPIPVHT+P D++L + +
Sbjct: 68 EQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFR 127
Query: 128 PCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVETITDL-EFIHNTLFIEEIN 186
CP++ + + + S E Q+ L Y+ + + +G + + + +++ L+ E ++
Sbjct: 128 NCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVH 187
Query: 187 NLTLPEW----THPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXXXXX 242
N TLP W T E + I + RL+ G LV +I+ HM
Sbjct: 188 NFTLPSWATEDTMTKLRELSELSLLSLYGI-HKQKEKSRLQGGVLVNEILNHMKRATQIP 246
Query: 243 XXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNSTSV 302
I +YSAHDTTV+ L L++++ PPY + + EL+ + EY+V + Y+N T
Sbjct: 247 SYKKLI-MYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQH 305
Query: 303 PPYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVAC 339
PY L +PGC CPL+ F L V+ D W C
Sbjct: 306 EPYPLMLPGCSPSCPLERFAELVGPVIPQD--WSTEC 340
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 187/337 (55%), Gaps = 11/337 (3%)
Query: 9 LYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSK 68
++RHGDR PI +PNDP K +S WP G GQLT G QHY+LG + RY + +SY
Sbjct: 9 VFRHGDRGPIETFPNDPIKESS-WPQGFGQLTKWGMGQHYELGSYIRRRYGRFLNNSYKH 67
Query: 69 ENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMK-K 127
+ VY+ STDVDRTLMSA NLA FPP+G+ +W+P++ WQPIPVHT+ D++L + +
Sbjct: 68 DQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDRLLYLPFR 127
Query: 128 PCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVETITDL-EFIHNTLFIEEIN 186
CP++ K + + S E + L Y+ + +G + + ++ +++ L+ E ++
Sbjct: 128 DCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVH 187
Query: 187 NLTLPEW----THPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXXXXX 242
N TLP W E + I + RL+ G LV +I+K+M
Sbjct: 188 NFTLPTWATEDAMTKLKELSELSLLSLYGI-HKQKEKSRLQGGVLVNEILKNMKLATQPQ 246
Query: 243 XXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNSTSV 302
I +YSAHDTTV+ L L++++ PPY + ++EL+Q + ++V + Y+N T
Sbjct: 247 KARKLI-MYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYRNETQN 305
Query: 303 PPYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVAC 339
PY L++PGC CPL+ F L V+ D W C
Sbjct: 306 EPYPLTLPGCTHSCPLEKFAELLDPVIPQD--WATEC 340
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 138/317 (43%), Gaps = 21/317 (6%)
Query: 11 RHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIG---DSYS 67
RHGDR P N Y W +LT +G Q Y LG +RY D G + Y
Sbjct: 16 RHGDRAPFANIENANYS----WGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYV 71
Query: 68 KENVYVMSTDVDRTLMSAEANLAGFFPPK-----GDQVWDPKIK--WQPIPVHTMPEKLD 120
+++YV+S+ +RT++SA++ L G +P GD DP IK +QPIP+ T+ D
Sbjct: 72 DQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGD--GDPAIKDRFQPIPIMTLSA--D 127
Query: 121 KVLSMKKPCPQYDVEKRKYM-NSPEIQQVLAKYRPLFQYVSQHAGEPVETITDLEFIHNT 179
L ++ P QY +KY+ NSPE Q + P F Q G + + D+ + +
Sbjct: 128 SRL-IQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGLNDVITVGDV 186
Query: 180 LFIEEINNLTLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXX 239
L + + + LP+ + + + + A ++ + + G L +++ +
Sbjct: 187 LIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNRMIEDLNNAV 246
Query: 240 XXXXXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNS 299
+ YS HD T+ ++ TL + P Y + + +EL++ D Y V + Y
Sbjct: 247 NGKSKYKMTY-YSGHDLTLLEVMGTLGVPLDTAPGYASNLEMELYKDGDIYTVKLRYNGK 305
Query: 300 TSVPPYQLSIPGCDFDC 316
P C D
Sbjct: 306 YVKLPIMDKNNSCSLDA 322
>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
Length = 342
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 21/317 (6%)
Query: 11 RHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIG---DSYS 67
RHGDR P N Y W +LT +G Q Y LG +RY D G + Y
Sbjct: 16 RHGDRAPFANIENANYS----WGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYV 71
Query: 68 KENVYVMSTDVDRTLMSAEANLAGFFPPK-----GDQVWDPKIK--WQPIPVHTMPEKLD 120
+++YV+S+ +RT++SA++ L G +P GD DP IK +QPIP+ T+ D
Sbjct: 72 DQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGD--GDPAIKDRFQPIPIMTLSA--D 127
Query: 121 KVLSMKKPCPQYDVEKRKYM-NSPEIQQVLAKYRPLFQYVSQHAGEPVETITDLEFIHNT 179
L ++ P QY +KY+ NSPE Q + P F Q G + + D+ + +
Sbjct: 128 SRL-IQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGLNDVITVGDV 186
Query: 180 LFIEEINNLTLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXX 239
L + + + LP+ + + + + A ++ + + G L +++ +
Sbjct: 187 LIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNRMIEDLNNAV 246
Query: 240 XXXXXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNS 299
+ YS H T+ ++ TL + P Y + + +EL++ D Y V + Y
Sbjct: 247 NGKSKYKMTY-YSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYKDGDIYTVKLRYNGK 305
Query: 300 TSVPPYQLSIPGCDFDC 316
P C D
Sbjct: 306 YVKLPIMDKNNSCSLDA 322
>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
Length = 342
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 137/317 (43%), Gaps = 21/317 (6%)
Query: 11 RHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIG---DSYS 67
R+GDR P N Y W +LT +G Q Y LG +RY D G + Y
Sbjct: 16 RNGDRAPFANIENANYS----WGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYV 71
Query: 68 KENVYVMSTDVDRTLMSAEANLAGFFPPK-----GDQVWDPKIK--WQPIPVHTMPEKLD 120
+++YV+S+ +RT++SA++ L G +P GD DP IK +QPIP+ T+ D
Sbjct: 72 DQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGD--GDPAIKDRFQPIPIMTLSA--D 127
Query: 121 KVLSMKKPCPQYDVEKRKYM-NSPEIQQVLAKYRPLFQYVSQHAGEPVETITDLEFIHNT 179
L ++ P QY +KY+ NSPE Q + P F Q G + + D+ + +
Sbjct: 128 SRL-IQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGLNDVITVGDV 186
Query: 180 LFIEEINNLTLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAXX 239
L + + + LP+ + + + + A ++ + + G L +++ +
Sbjct: 187 LIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNRMIEDLNNAV 246
Query: 240 XXXXXXXXIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNS 299
+ YS H T+ ++ TL + P Y + + +EL++ D Y V + Y
Sbjct: 247 NGKSKYKMTY-YSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYKDGDIYTVKLRYNGK 305
Query: 300 TSVPPYQLSIPGCDFDC 316
P C D
Sbjct: 306 YVKLPIMDKNNSCSLDA 322
>pdb|2WNH|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNH|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 7 FQLYRHGDRTP-------INFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYR 59
+L RHG R P I P+ + W G+LT G G+ G+ YR
Sbjct: 20 VELSRHGIRPPTAGNREAIEAATGRPW---TEWTTHDGELTGHGYAAVVNKGREEGQHYR 76
Query: 60 DLI---GDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKG 97
L + E++YV ++ + RT +A+A + G FP G
Sbjct: 77 QLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117
>pdb|3NTL|A Chain A, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
pdb|3NTL|B Chain B, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
Length = 398
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 75/366 (20%), Positives = 135/366 (36%), Gaps = 85/366 (23%)
Query: 32 WPVGPGQLTNVGKLQHYKLG----QWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEA 87
W V GQLT G + +G +W ++ G+ + ++VY + + RT+ +A+
Sbjct: 40 WEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANSLQRTVATAQF 99
Query: 88 NLAGFFPPKGDQVWDPKIKWQPIPVH------TMPEKLDKVLSMKKPCPQYDVEKRKYMN 141
+ G FP +PVH TM + V++ P++ + K M
Sbjct: 100 FITGAFPGC------------DVPVHHQEKMGTMDPTFNPVIT--DNSPEFREKALKAME 145
Query: 142 SPEIQQVLAKYRPLFQYVSQHAGEP------VETITDLEFIHNTLFIEE--------INN 187
+ + L + L + ++ +A P V ++ D + + + +E + N
Sbjct: 146 TERQKMQLTESYKLLEQMTNYADSPSCKEKKVCSLADAKDTFSADYEKEPGVSGPLKVGN 205
Query: 188 LTLPEWTHPIYPE-PLRTVAAFSFAIPARTPALKRLKAG-----------------PLVE 229
+ +T Y P VA + L +LK G PLV+
Sbjct: 206 SLVDAFTLQYYEGFPADQVAWGEIKTDQQWRVLSKLKNGYQDSLFTSTEVAQNVAKPLVK 265
Query: 230 DIVKHMVAXXXXXXXXXXIWIYSAHDTTVANLLNTLNI--FDLH-----CPPYTAAVMIE 282
I K +V I + HD+ +A+LL L+ + LH P V
Sbjct: 266 YIDKTLVT---EQAKAPKITLLVGHDSNIASLLTALDFKPYQLHDQQERTPIGGKIVFQR 322
Query: 283 LHQKD---DEYYVNILYKNSTSV---------PPYQ---LSIPGCDFD----CPLDDFVS 323
H K+ + + +Y++S + P Q L + GC D CP+D F +
Sbjct: 323 WHDKNANQELMKIEYVYQSSEQLRNASVLSLQSPAQRVTLELKGCPVDANGFCPVDKFNA 382
Query: 324 LTQDVV 329
+ +
Sbjct: 383 VMNNAA 388
>pdb|2WNI|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 13 GDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLI---GDSYSKE 69
G+R I P+ + W G+LT G G+ G+ YR L + E
Sbjct: 33 GNREAIEAATGRPW---TEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAE 89
Query: 70 NVYVMSTDVDRTLMSAEANLAGFFPPKG 97
++YV ++ + RT +A+A + G FP G
Sbjct: 90 SIYVRASPLQRTRATAQALVDGAFPGCG 117
>pdb|1NT4|A Chain A, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
pdb|1NT4|B Chain B, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
Length = 391
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 32 WPVGPGQLTNVGKLQHYKLG----QWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEA 87
W V GQLT G + +G +W E+ G+ VY + + RT+ +A+
Sbjct: 42 WDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQF 101
Query: 88 NLAGFFP 94
+ G FP
Sbjct: 102 FITGAFP 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,312,171
Number of Sequences: 62578
Number of extensions: 513510
Number of successful extensions: 1141
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 12
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)