Query psy16945
Match_columns 395
No_of_seqs 180 out of 1267
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:42:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3720|consensus 100.0 3.5E-70 7.5E-75 536.4 30.6 339 2-343 33-385 (411)
2 PF00328 His_Phos_2: Histidine 100.0 6.9E-52 1.5E-56 402.2 24.0 296 2-297 1-347 (347)
3 PRK10172 phosphoanhydride phos 100.0 1.2E-50 2.7E-55 394.7 32.7 317 1-330 32-431 (436)
4 PRK10173 glucose-1-phosphatase 100.0 9.9E-47 2.1E-51 369.5 31.3 311 1-329 29-412 (413)
5 cd07061 HP_HAP_like Histidine 100.0 5.3E-43 1.1E-47 324.3 19.4 217 2-297 1-242 (242)
6 KOG1382|consensus 100.0 4.6E-36 9.9E-41 286.4 23.8 314 2-330 62-435 (467)
7 KOG3672|consensus 100.0 1.6E-31 3.4E-36 247.3 19.7 310 1-328 92-466 (487)
8 cd07040 HP Histidine phosphata 99.1 1.3E-09 2.8E-14 93.0 13.9 71 6-93 1-71 (153)
9 KOG1057|consensus 99.0 3.8E-10 8.3E-15 113.8 7.1 62 36-98 509-577 (1018)
10 PF00300 His_Phos_1: Histidine 97.3 0.00036 7.8E-09 59.4 4.6 69 7-92 2-70 (158)
11 cd07067 HP_PGM_like Histidine 96.8 0.0048 1.1E-07 52.3 7.5 69 7-92 2-70 (153)
12 smart00855 PGAM Phosphoglycera 96.7 0.007 1.5E-07 51.6 7.5 70 7-92 2-71 (155)
13 TIGR03162 ribazole_cobC alpha- 96.4 0.0091 2E-07 52.1 6.8 65 8-92 2-66 (177)
14 PRK15416 lipopolysaccharide co 96.3 0.016 3.6E-07 51.5 7.9 66 6-90 56-121 (201)
15 COG0406 phoE Broad specificity 96.2 0.018 3.9E-07 51.7 7.5 70 6-92 4-73 (208)
16 PRK15004 alpha-ribazole phosph 96.0 0.028 6E-07 50.2 7.8 66 7-91 3-68 (199)
17 PTZ00122 phosphoglycerate muta 96.0 0.027 5.9E-07 53.7 8.0 74 5-92 103-176 (299)
18 PRK03482 phosphoglycerate muta 95.9 0.033 7.2E-07 50.3 8.1 68 6-92 3-70 (215)
19 PRK14116 gpmA phosphoglyceromu 95.9 0.034 7.3E-07 50.9 8.2 68 7-91 4-71 (228)
20 PRK01295 phosphoglyceromutase; 95.8 0.037 8E-07 49.8 7.6 69 7-92 5-73 (206)
21 PRK14119 gpmA phosphoglyceromu 95.6 0.054 1.2E-06 49.5 8.2 68 7-91 4-71 (228)
22 PRK14115 gpmA phosphoglyceromu 95.6 0.052 1.1E-06 50.3 8.0 69 7-92 3-71 (247)
23 TIGR00249 sixA phosphohistidin 95.6 0.058 1.3E-06 46.0 7.6 65 7-92 3-67 (152)
24 TIGR01258 pgm_1 phosphoglycera 95.5 0.05 1.1E-06 50.4 7.7 69 7-92 3-71 (245)
25 PRK01112 phosphoglyceromutase; 95.5 0.05 1.1E-06 49.8 7.5 67 7-92 4-70 (228)
26 PRK14120 gpmA phosphoglyceromu 95.5 0.062 1.3E-06 49.9 8.1 68 7-91 7-74 (249)
27 PRK14118 gpmA phosphoglyceromu 95.5 0.073 1.6E-06 48.6 8.5 69 7-92 3-71 (227)
28 TIGR03848 MSMEG_4193 probable 95.5 0.072 1.6E-06 47.7 8.3 44 38-92 26-69 (204)
29 PRK13463 phosphatase PhoE; Pro 95.2 0.069 1.5E-06 47.9 7.4 66 6-90 4-69 (203)
30 PRK06193 hypothetical protein; 95.2 0.1 2.2E-06 46.9 8.1 71 5-89 43-115 (206)
31 PRK13462 acid phosphatase; Pro 95.1 0.11 2.4E-06 46.6 8.3 65 7-88 8-72 (203)
32 PRK10848 phosphohistidine phos 95.0 0.13 2.8E-06 44.3 8.2 65 7-92 3-67 (159)
33 PRK07238 bifunctional RNase H/ 94.8 0.097 2.1E-06 51.6 7.6 69 6-92 173-241 (372)
34 PRK14117 gpmA phosphoglyceromu 94.6 0.16 3.4E-06 46.5 8.2 67 7-90 4-70 (230)
35 COG2062 SixA Phosphohistidine 93.9 0.23 5E-06 42.7 7.1 68 7-93 4-71 (163)
36 KOG0235|consensus 93.5 0.17 3.6E-06 45.5 5.7 73 4-93 5-77 (214)
37 PTZ00123 phosphoglycerate muta 93.2 0.16 3.5E-06 46.7 5.3 48 37-93 13-60 (236)
38 PTZ00322 6-phosphofructo-2-kin 91.3 0.49 1.1E-05 50.4 6.9 66 7-90 422-487 (664)
39 KOG4754|consensus 91.2 1.1 2.3E-05 40.0 7.6 83 4-97 14-99 (248)
40 KOG3734|consensus 89.9 0.16 3.5E-06 47.2 1.5 46 39-93 70-115 (272)
41 PF05393 Hum_adeno_E3A: Human 89.1 0.58 1.3E-05 35.2 3.6 34 359-394 34-68 (94)
42 PF01102 Glycophorin_A: Glycop 85.4 1 2.2E-05 36.8 3.4 29 358-386 67-95 (122)
43 TIGR01478 STEVOR variant surfa 84.0 1 2.3E-05 41.8 3.3 28 357-384 260-287 (295)
44 PTZ00370 STEVOR; Provisional 83.0 1.2 2.6E-05 41.5 3.2 35 126-161 53-90 (296)
45 PHA02650 hypothetical protein; 82.7 4 8.6E-05 30.2 5.1 16 316-331 18-33 (81)
46 KOG4609|consensus 82.4 2 4.4E-05 38.3 4.2 63 7-93 97-159 (284)
47 PF15102 TMEM154: TMEM154 prot 82.3 1 2.2E-05 37.6 2.3 22 365-386 68-89 (146)
48 PF02439 Adeno_E3_CR2: Adenovi 80.7 3.3 7.1E-05 26.2 3.6 14 373-386 23-36 (38)
49 PF08693 SKG6: Transmembrane a 80.3 0.27 5.9E-06 31.5 -1.3 26 357-382 14-39 (40)
50 PF12575 DUF3753: Protein of u 73.5 8.2 0.00018 28.2 4.5 22 317-342 19-40 (72)
51 PHA02692 hypothetical protein; 70.9 13 0.00028 26.9 4.9 15 317-331 19-33 (70)
52 PF02009 Rifin_STEVOR: Rifin/s 69.3 4.8 0.0001 38.3 3.3 41 125-165 30-72 (299)
53 PF05568 ASFV_J13L: African sw 68.4 7.6 0.00017 32.3 3.8 18 324-344 5-22 (189)
54 PF01299 Lamp: Lysosome-associ 67.8 5.6 0.00012 38.0 3.5 15 379-395 292-306 (306)
55 PHA02844 putative transmembran 66.7 16 0.00036 26.7 4.8 16 316-331 18-33 (75)
56 PF01034 Syndecan: Syndecan do 65.8 2.3 4.9E-05 30.3 0.3 6 378-383 33-38 (64)
57 TIGR01478 STEVOR variant surfa 63.8 8.7 0.00019 35.8 3.7 29 359-387 265-293 (295)
58 PHA03054 IMV membrane protein; 62.6 21 0.00045 25.9 4.6 16 316-331 18-33 (72)
59 PTZ00370 STEVOR; Provisional 60.5 8.8 0.00019 35.9 3.2 27 358-384 257-283 (296)
60 PHA02819 hypothetical protein; 59.3 30 0.00065 25.1 5.0 16 316-331 18-33 (71)
61 PF05454 DAG1: Dystroglycan (D 56.5 3.6 7.9E-05 38.8 0.0 24 361-384 152-175 (290)
62 PF05961 Chordopox_A13L: Chord 50.6 35 0.00076 24.5 4.1 18 368-385 12-29 (68)
63 PF10954 DUF2755: Protein of u 50.1 27 0.00058 26.5 3.7 27 356-382 73-99 (100)
64 PF05337 CSF-1: Macrophage col 48.1 6 0.00013 36.7 0.0 18 372-389 241-258 (285)
65 PF05545 FixQ: Cbb3-type cytoc 46.8 28 0.00061 23.2 3.2 7 372-378 24-30 (49)
66 TIGR02976 phageshock_pspB phag 44.5 35 0.00076 25.3 3.6 19 368-386 14-33 (75)
67 COG0588 GpmA Phosphoglycerate 43.4 42 0.00091 30.3 4.5 69 7-92 4-72 (230)
68 PF06667 PspB: Phage shock pro 43.1 38 0.00083 25.1 3.6 12 371-382 17-29 (75)
69 PHA02975 hypothetical protein; 43.0 60 0.0013 23.4 4.3 16 316-331 18-33 (69)
70 COG3422 Uncharacterized conser 42.9 27 0.00059 24.3 2.6 22 279-300 3-25 (59)
71 TIGR01477 RIFIN variant surfac 41.3 32 0.0007 33.3 3.7 15 125-139 53-67 (353)
72 PF14991 MLANA: Protein melan- 41.1 5.1 0.00011 31.9 -1.4 21 359-381 30-50 (118)
73 PTZ00046 rifin; Provisional 40.9 33 0.00071 33.4 3.7 15 125-139 50-64 (358)
74 PF15050 SCIMP: SCIMP protein 39.9 24 0.00053 28.4 2.3 11 372-382 22-32 (133)
75 PF13908 Shisa: Wnt and FGF in 37.2 26 0.00056 30.5 2.3 9 357-365 81-89 (179)
76 PF12191 stn_TNFRSF12A: Tumour 35.9 9.7 0.00021 31.0 -0.5 12 333-344 61-72 (129)
77 PHA03099 epidermal growth fact 34.8 47 0.001 27.2 3.2 17 371-387 116-132 (139)
78 PHA03049 IMV membrane protein; 34.2 88 0.0019 22.4 4.0 12 362-373 7-18 (68)
79 PRK09458 pspB phage shock prot 33.8 72 0.0016 23.6 3.7 23 364-386 10-32 (75)
80 PF07213 DAP10: DAP10 membrane 32.6 64 0.0014 24.1 3.3 35 359-393 38-73 (79)
81 PF07204 Orthoreo_P10: Orthore 30.3 21 0.00045 27.5 0.4 9 376-384 61-69 (98)
82 PF01299 Lamp: Lysosome-associ 29.7 50 0.0011 31.5 3.1 11 375-385 291-301 (306)
83 KOG4818|consensus 29.7 56 0.0012 31.6 3.3 12 382-395 351-362 (362)
84 PF04971 Lysis_S: Lysis protei 28.7 1E+02 0.0022 22.3 3.7 20 357-376 35-54 (68)
85 PF14610 DUF4448: Protein of u 27.3 21 0.00046 31.4 0.1 13 361-373 164-176 (189)
86 PF04272 Phospholamban: Phosph 26.1 70 0.0015 21.0 2.2 14 361-374 37-50 (52)
87 PF06024 DUF912: Nucleopolyhed 25.3 30 0.00064 27.2 0.6 13 361-373 64-76 (101)
88 TIGR01294 P_lamban phospholamb 23.1 92 0.002 20.4 2.4 14 361-374 37-50 (52)
89 PHA03286 envelope glycoprotein 22.9 88 0.0019 31.3 3.4 16 314-329 339-354 (492)
90 PF04478 Mid2: Mid2 like cell 22.5 32 0.0007 29.1 0.3 7 377-383 73-79 (154)
91 PF02009 Rifin_STEVOR: Rifin/s 22.4 74 0.0016 30.3 2.7 24 359-382 260-283 (299)
92 TIGR03521 GldG gliding-associa 22.1 89 0.0019 32.6 3.5 26 359-384 525-550 (552)
93 PTZ00382 Variant-specific surf 21.9 49 0.0011 25.8 1.2 6 376-381 88-93 (96)
94 PF02480 Herpes_gE: Alphaherpe 21.0 32 0.0007 34.7 0.0 15 246-260 154-168 (439)
95 PRK00523 hypothetical protein; 20.8 1.5E+02 0.0032 21.8 3.3 17 361-377 9-25 (72)
96 PF15298 AJAP1_PANP_C: AJAP1/P 20.4 73 0.0016 28.2 2.0 20 371-390 117-136 (205)
97 PHA03164 hypothetical protein; 20.2 1.2E+02 0.0027 22.3 2.8 21 362-382 65-85 (88)
98 KOG0234|consensus 20.0 1.3E+02 0.0028 30.2 3.9 43 35-86 260-302 (438)
No 1
>KOG3720|consensus
Probab=100.00 E-value=3.5e-70 Score=536.44 Aligned_cols=339 Identities=37% Similarity=0.697 Sum_probs=302.5
Q ss_pred eEEEEEEEecCCCCCCCCC-CCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhh---hhhcCCCCCceEEEEecC
Q psy16945 2 TYHISFQLYRHGDRTPINF-YPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYR---DLIGDSYSKENVYVMSTD 77 (395)
Q Consensus 2 ~L~~V~vv~RHG~R~P~~~-~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~---~~l~~~y~~~~i~vrST~ 77 (395)
+|++|++++|||||+|... ||.||+++..+|++|+||||+.|++|+++||++||+||+ +||++.|++++|++|||+
T Consensus 33 ~Lefv~~i~RHGdRaP~~~~yp~dp~~~~~~~~~G~GqLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd 112 (411)
T KOG3720|consen 33 ELEFVQVIFRHGDRAPVDTPYPLDPFKEEDFWPRGWGQLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTD 112 (411)
T ss_pred ceEEEEEEeecCCCCcccCCCCCCcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHhhccccCCcccCcceEEEecCC
Confidence 6999999999999999776 999999987789999999999999999999999999665 699999999999999999
Q ss_pred chhHHHHHHHHHcccCCCC-CCCCCCCCCCcccceEEecCCCccc-ccCC-CCCChHHHHHHHHHhCCHHHHHHHHhhHH
Q psy16945 78 VDRTLMSAEANLAGFFPPK-GDQVWDPKIKWQPIPVHTMPEKLDK-VLSM-KKPCPQYDVEKRKYMNSPEIQQVLAKYRP 154 (395)
Q Consensus 78 ~~RTi~SA~a~l~GL~p~~-~~~~~~~~~~~qpipi~t~~~~~D~-ll~~-~~~Cp~~~~~~~~~~~s~~~~~~~~~~~~ 154 (395)
++||+||||++++||||+. ....|++..+||||||++.+...|. ++.+ ..+||++++.+++..+.++.++....+.+
T Consensus 113 ~nRtl~SAqs~laGlfp~~~~~~~~~~~~~W~piPV~~~~~~~D~~~~~~~~~~Cpr~~~~~~~~~~~~~~~~~~~~~~~ 192 (411)
T KOG3720|consen 113 VNRTLMSAQSVLAGLFPPEGRKMGWNYPDGWQPVPVPTHTLEEDDLLLLPQKAPCPRYDELWREVAEEPELQKINEPVAE 192 (411)
T ss_pred ccHHHHHHHHHHHhhCCCCCCCcccCcccCCCceeeEEeecCcchhhhccccCCCCcHHHHHHHHhhhhhhhhcccHHHH
Confidence 9999999999999999996 4556887778999999988766663 3444 88999999988887666677788888999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCCCCCCCCcc---chhhHHHHHHhhcccccchHhHhHhhhchHHHHH
Q psy16945 155 LFQYVSQHAGEPVETITDLEFIHNTLFIEEINNLTLPEWTHPI---YPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDI 231 (395)
Q Consensus 155 ~~~~l~~~~g~~~~~~~~~~~~~D~l~~~~~~~~~lp~w~~~~---~~~~l~~l~~~~~~~~~~~~~~~~l~~g~ll~~i 231 (395)
+++.|++.+|.+......++.++|++.|++.+++++|+|.++. ..+.+..+....+.....+.++++++||+|+++|
T Consensus 193 ~~~~l~~~~g~~~~~~~~~~~~~d~l~~e~~~~~~~p~w~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~kl~gG~lln~i 272 (411)
T KOG3720|consen 193 LLRRLTNHTGLTHVDLDNFNDLYDTLKCEQFNNLPLPPWLNDQAQIFYDSIQAFSEGLFVGPDYSPEMRKLRGGPLLNDL 272 (411)
T ss_pred HHHHHHHhhCCCcccchhhcccccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHccCcchhHHHHHhccChhHHHH
Confidence 9999999999986456667889999999999999999999876 5556666666666555688999999999999999
Q ss_pred HHHHHHhhcCCCCCceEEEEee---chHhHHHHHHHhCCCCCCCCCchheeeeEEEeeC-CcceEEEEEeCCCCCCCeee
Q psy16945 232 VKHMVAKSKDKLKKKKIWIYSA---HDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKD-DEYYVNILYKNSTSVPPYQL 307 (395)
Q Consensus 232 l~~~~~~~~~~~~~~k~~~ys~---HD~ti~~ll~aLg~~~~~~ppyas~l~~El~~~~-~~~~Vr~~y~~~~~~~~~~l 307 (395)
+++|..+..+... .|...|++ ||+||.+||++|++.++.+|||||+|+||+|++. |+++||++|++++..+++++
T Consensus 273 l~~~~~k~~~~~~-~~~~~~~~~~~HD~tl~alL~aL~~~~~~~P~yas~i~iEl~~~~~~~~~vk~~yr~~~~~~~~~~ 351 (411)
T KOG3720|consen 273 LNNMVEKSSCSLA-KKKLFYSYLYGHDTTLYALLAALGVGDGEWPPYASAIAIELHRNKGGKPYVKLLYRNDEHSEPVTL 351 (411)
T ss_pred HHHHHHHHhcccC-ccccceeeccCccHHHHHHHHHHhccCCCCCchHHHhHhhheecCCCCEEEEEEEecCCCCCceec
Confidence 9999999887654 67777777 9999999999999999999999999999999998 89999999999887788999
Q ss_pred eCCCCCCCCChHHHHHHhhhccCCChhHHHhcccCC
Q psy16945 308 SIPGCDFDCPLDDFVSLTQDVVLTDTQWEVACHAHH 343 (395)
Q Consensus 308 ~l~gC~~~Cpl~~F~~~~~~~~~~~~d~~~~C~~~~ 343 (395)
.+|||+..||+++|.+.+++.++. +|..+|..+.
T Consensus 352 ~ipgC~~~C~l~~f~~~~~~~~p~--~~~~~~~~~~ 385 (411)
T KOG3720|consen 352 QIPGCDGPCPLSTFQNLAKDVRPD--KPIEECCGTK 385 (411)
T ss_pred cCCCCCCCCCHHHHHHHHhhcCCC--ChHHHhccCc
Confidence 999999999999999999999999 9999998743
No 2
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=100.00 E-value=6.9e-52 Score=402.25 Aligned_cols=296 Identities=33% Similarity=0.589 Sum_probs=230.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCC--------------------CCCCC-----CCCCCCCcCcccHHHHHHHHHHHHHHHH
Q psy16945 2 TYHISFQLYRHGDRTPINFYPN--------------------DPYKN-----ASYWPVGPGQLTNVGKLQHYKLGQWFGE 56 (395)
Q Consensus 2 ~L~~V~vv~RHG~R~P~~~~p~--------------------d~~~~-----~~~w~~~~G~LT~~G~~q~~~LG~~lR~ 56 (395)
||++|+||+|||+|+|+..++. .+|.. ...|.++.|+||+.|++|+++||+++|+
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~ 80 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELESSAMSPETPGPFPGNYIQNEFNWPCKWGQLTPRGMEQHYQLGKRLRE 80 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHTHHHHHTGGSGGGGTT--TCCGSSSCTTSBTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhhhhcccCCCCCccccccccccccCCCCCcccchhhhHHHHHHHHHHH
Confidence 7999999999999999765541 12321 1137889999999999999999999999
Q ss_pred HhhhhhcCCCCCceEEEEecCchhHHHHHHHHHcccCCCCC---CCCCCCCCCcccceEEecCC----CcccccCCCCCC
Q psy16945 57 RYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKG---DQVWDPKIKWQPIPVHTMPE----KLDKVLSMKKPC 129 (395)
Q Consensus 57 rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~p~~~---~~~~~~~~~~qpipi~t~~~----~~D~ll~~~~~C 129 (395)
||++|+++.|++++|+||||+.+||++||+||++||||+.. ...+.+...|+|+|+++.+. .++.++.+...|
T Consensus 81 ~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 160 (347)
T PF00328_consen 81 RYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAFLQGLYPPSGEPFPDITQPPNSWQPIPVHTIPEIKKNDDDILLPNYDNC 160 (347)
T ss_dssp HHHTSSTSSS-TTTEEEEEESSHHHHHHHHHHHHHHSHTTSS-ECTTTSCTSCTCTEEEEEEECCHCGTTSSSSTSHTTH
T ss_pred HHHHhccccccccceeEEEeccchHHHHHHHHHHHHhCCCccccccccccccCCCCcceeeccccccccchhcccccchh
Confidence 99999999999999999999999999999999999998876 44556778899999999887 445454566789
Q ss_pred hHHHH--HHHHHhCCHHHHHHHHhhHHHHH-HHHHHc-CCCCCChhhHHHHHHHHHHHHH--cCCCCCCCCCc--cchhh
Q psy16945 130 PQYDV--EKRKYMNSPEIQQVLAKYRPLFQ-YVSQHA-GEPVETITDLEFIHNTLFIEEI--NNLTLPEWTHP--IYPEP 201 (395)
Q Consensus 130 p~~~~--~~~~~~~s~~~~~~~~~~~~~~~-~l~~~~-g~~~~~~~~~~~~~D~l~~~~~--~~~~lp~w~~~--~~~~~ 201 (395)
|++.+ .........++.+..+.+...+. .+.+.. |....+..+.+.+++.+.++.. ++.++|+|.+. +....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T PF00328_consen 161 PAYNEIDSENEKEQSEEIDKWNQDFQESLAKRLQKVIPGEDNLTFFDVWAIFDDCLYEQIYNDGSPFPEWFTDMKEDALQ 240 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECTHHHHHHHHHHHHHHHHHHTT-GGGGGSCHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccccccchhhhhhhhhhhhhhccCCCCCCchhhcccchHHHH
Confidence 99988 22222233455556566666655 777763 3333466778888877777665 78899999876 56666
Q ss_pred HHHHHHhhccc--ccchHhHhHhhhchHHHHHHHHHHHhhcCCC--CCceEEEEeechHhHHHHHHHhCCCC------CC
Q psy16945 202 LRTVAAFSFAI--PARTPALKRLKAGPLVEDIVKHMVAKSKDKL--KKKKIWIYSAHDTTVANLLNTLNIFD------LH 271 (395)
Q Consensus 202 l~~l~~~~~~~--~~~~~~~~~l~~g~ll~~il~~~~~~~~~~~--~~~k~~~ys~HD~ti~~ll~aLg~~~------~~ 271 (395)
++++.++...+ .+.+++.+++.|++++++|+++|...+++.. .++|+.+|||||+||++|+++||+.+ ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~~~~k~~~~s~HD~tl~~ll~~Lgl~~~~~~~~~~ 320 (347)
T PF00328_consen 241 LEYLEDLKEYYQYYGYSDEIARLQGGPLLNELLRRLKQAINGNSPGRPPKLVLYSGHDTTLMPLLSALGLDNYSPPYQSY 320 (347)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHHHHHCHSSTCSCSSCSEEEEEE-HHHHHHHHHHTTCTTTSTTTHSS
T ss_pred HHhhhhHHHHhhcccCCchHHHHHHhHHHHHHHHHHhhccccccccccceEEEEecCHHHHHHHHHHhCCCccCccccCC
Confidence 66766654433 2578889999999999999999999988765 13899999999999999999999998 78
Q ss_pred CCCchheeeeEEEeeC-CcceEEEEEe
Q psy16945 272 CPPYTAAVMIELHQKD-DEYYVNILYK 297 (395)
Q Consensus 272 ~ppyas~l~~El~~~~-~~~~Vr~~y~ 297 (395)
+|||||+|+||+|+++ ++++|||+||
T Consensus 321 ~pp~as~l~fEl~~~~~~~~~Vr~~yN 347 (347)
T PF00328_consen 321 WPPYASNLVFELYRDSGKNYYVRVLYN 347 (347)
T ss_dssp CSSTT-EEEEEEEEETTTEEEEEEEET
T ss_pred CCCccceeEEEEEEeCCCcEEEEEEEC
Confidence 9999999999999975 4599999997
No 3
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=100.00 E-value=1.2e-50 Score=394.66 Aligned_cols=317 Identities=21% Similarity=0.312 Sum_probs=245.5
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCC-C---CCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhh--hhcCC--CCCceEE
Q psy16945 1 MTYHISFQLYRHGDRTPINFYPND-P---YKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRD--LIGDS--YSKENVY 72 (395)
Q Consensus 1 ~~L~~V~vv~RHG~R~P~~~~p~d-~---~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~--~l~~~--y~~~~i~ 72 (395)
++|++|++|+|||+|+|+..+|.. + ..+. .|+++.||||+.|++|+++||+++|+||.. |++++ |++++|+
T Consensus 32 ~~L~~Vvil~RHG~RaP~~~~~~~~~~t~~~w~-~W~~~~GqLT~~G~~~~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~ 110 (436)
T PRK10172 32 LKLESVVIVSRHGVRAPTKATQLMQDVTPDAWP-QWPVKLGWLTPRGGELVTLLGHYQRQRLVADGLLAAKGCPQPGQVA 110 (436)
T ss_pred CeEEEEEEEeeCCCCCCCCCCcccccCCCCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEE
Confidence 579999999999999999877633 2 2333 389999999999999999999999999984 99885 8999999
Q ss_pred EEecCchhHHHHHHHHHcccCCCCCCCCCCCCCCcccceEEecCC--CcccccCC-CCCChHHHHHHHH--H--hCCHHH
Q psy16945 73 VMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPE--KLDKVLSM-KKPCPQYDVEKRK--Y--MNSPEI 145 (395)
Q Consensus 73 vrST~~~RTi~SA~a~l~GL~p~~~~~~~~~~~~~qpipi~t~~~--~~D~ll~~-~~~Cp~~~~~~~~--~--~~s~~~ 145 (395)
|+|+..+||+|||++|++||||+.+ ||||+.++ +.|.+|++ ...|+.++..... . ....+.
T Consensus 111 v~a~~~~RTi~SAqafl~GlyP~c~------------i~vh~~~~~~~~DplF~pv~~~~~~~d~~~~~~a~~~~~~g~~ 178 (436)
T PRK10172 111 AIADVDQRTRKTGEAFLAGLAPDCA------------ITVHTQADTSKPDPLFNPLKTGVCQLDNANVTDAILSRAGGSI 178 (436)
T ss_pred EEeCCchHHHHHHHHHHHhcCCCCC------------CcceecCCCCCCCCccChhhcCCCccCHHHHHHHHHHHhCCch
Confidence 9999999999999999999999987 89999877 56999987 5567777653222 1 112345
Q ss_pred HHHHHhhHHHHHHHHHHcC-------------CC-------------C----CChh----hHHHHHHHHHHHHHcCCCCC
Q psy16945 146 QQVLAKYRPLFQYVSQHAG-------------EP-------------V----ETIT----DLEFIHNTLFIEEINNLTLP 191 (395)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~g-------------~~-------------~----~~~~----~~~~~~D~l~~~~~~~~~lp 191 (395)
+.+.+.+++-++.|.+.++ .. . .++. -...+.|.+..++.+|++.+
T Consensus 179 ~~~~~~~~~~~~~L~~vl~~~~s~~C~~~~~~~~~C~l~~~~p~~~~~~~~~~~l~G~~~las~l~e~~lLqy~eg~p~v 258 (436)
T PRK10172 179 ADFTQRYQTAFRELERVLNFAQSPLCLSREKQDKSCSLTQALPSELKVSADNVSLSGAVSLASMLTEIFLLQQAQGMPEP 258 (436)
T ss_pred hhhhHhHHHHHHHHHHHhccccccccccccCCCCCccccccCCcceeecCCCCccccHHHHHhHHHHHHHHHHhcCCCcc
Confidence 5555666666777765332 10 0 0111 12356788899999999999
Q ss_pred CCCCcc---chhhHHHHHHhhcccccchHhHhHhhhchHHHHHHHHHHHhhc-----CCCCCceEEEEeechHhHHHHHH
Q psy16945 192 EWTHPI---YPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAKSK-----DKLKKKKIWIYSAHDTTVANLLN 263 (395)
Q Consensus 192 ~w~~~~---~~~~l~~l~~~~~~~~~~~~~~~~l~~g~ll~~il~~~~~~~~-----~~~~~~k~~~ys~HD~ti~~ll~ 263 (395)
.|.... .+..|..+.+..|...+.++.+++..|+||++.|++.|..... +...+.|+.+|+||||||+++++
T Consensus 259 aWg~~~~~~~~~~L~~l~n~~fd~~~~tp~vAr~~a~pLL~~I~~~L~~~~~~~~~~~~~~p~kl~~lvGHDTNIA~l~~ 338 (436)
T PRK10172 259 AWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARHRATPLLDLIMTALTPHPPQKQAYGITLPTSVLFIAGHDTNLANLGG 338 (436)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHhcccHHHHHHHHHHhccccccccccCCCCceEEEEEecchhHHHHHH
Confidence 998643 3557778889999999999999999999999999999976431 11112599999999999999999
Q ss_pred HhCCCC-----CCCCCchheeeeEEEeeC--CcceEEEEE--e------CCCC----C--CCeeeeCCCCC-----CCCC
Q psy16945 264 TLNIFD-----LHCPPYTAAVMIELHQKD--DEYYVNILY--K------NSTS----V--PPYQLSIPGCD-----FDCP 317 (395)
Q Consensus 264 aLg~~~-----~~~ppyas~l~~El~~~~--~~~~Vr~~y--~------~~~~----~--~~~~l~l~gC~-----~~Cp 317 (395)
+||+.. .+-+|+|++|+||+|++. |..+||+.| . +.+. + .+.++.+|||+ +.||
T Consensus 339 ~L~~~w~lp~q~~~tPpGg~LvFErw~d~~~~~~~vrv~~~yQsl~qLR~~~~L~l~~pp~~~~l~l~gC~~~~~~g~Cp 418 (436)
T PRK10172 339 ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVYQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCS 418 (436)
T ss_pred HhCCCccCCCCCCCCCCcceEEEEEEeeCCCCceEEEEEEEEcCHHHHhhcCcccccCCCcceeeecCCCCCcCcCCcCC
Confidence 999931 345889999999999983 666666654 3 1111 1 23788999998 3899
Q ss_pred hHHHHHHhhhccC
Q psy16945 318 LDDFVSLTQDVVL 330 (395)
Q Consensus 318 l~~F~~~~~~~~~ 330 (395)
|++|.+.+++.+.
T Consensus 419 l~~f~~~~~~~~~ 431 (436)
T PRK10172 419 LAGFTQIVNEARI 431 (436)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 4
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=100.00 E-value=9.9e-47 Score=369.48 Aligned_cols=311 Identities=20% Similarity=0.336 Sum_probs=226.7
Q ss_pred CeEEEEEEEecCCCCCCCCCCC-------CCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhh--hhhcCC--CCCc
Q psy16945 1 MTYHISFQLYRHGDRTPINFYP-------NDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYR--DLIGDS--YSKE 69 (395)
Q Consensus 1 ~~L~~V~vv~RHG~R~P~~~~p-------~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~--~~l~~~--y~~~ 69 (395)
|+|++|+|++|||.|+|+.... ..+|. . |+++.|+||+.|+.++..+|+++|++|. +|+++. ++++
T Consensus 29 ~~L~~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp--~-w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~ 105 (413)
T PRK10173 29 YQLQQVLMMSRHNLRAPLANNGSVLEQSTPNAWP--E-WDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPD 105 (413)
T ss_pred CeEEEEEEEeecccCCCCCCcchhhhhcCCCCCC--C-CCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcC
Confidence 5899999999999999996431 23443 3 8999999999999999999999999997 788875 4888
Q ss_pred eEEEEecCchhHHHHHHHHHcccCCCCCCCCCCCCCCcccceEEecCC--CcccccCCC--CCChHHHHHHHHHhCC-HH
Q psy16945 70 NVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPE--KLDKVLSMK--KPCPQYDVEKRKYMNS-PE 144 (395)
Q Consensus 70 ~i~vrST~~~RTi~SA~a~l~GL~p~~~~~~~~~~~~~qpipi~t~~~--~~D~ll~~~--~~Cp~~~~~~~~~~~s-~~ 144 (395)
+|+|||+..+||++||++|+.||||... |+||+.++ ..|.++.+. +..+.+.+...+..+. .+
T Consensus 106 ~v~~~a~~~~RT~~Sa~afl~Gl~P~c~------------i~v~~~~~~~~~DPlF~p~~~~~~~~~~~~~~~~~~~~~~ 173 (413)
T PRK10173 106 TVYAYANSLQRTVATAQFFITGAFPGCD------------IPVHHQEKMGTMDPTFNPVITDDSAAFREQALAAMEKELS 173 (413)
T ss_pred eEEEEeCCchHHHHHHHHHHHhcCCCCC------------ceeeecCCcCCCCCCCCccccCChHHHHHHHHHHhccchh
Confidence 9999999999999999999999999976 78887543 458888752 2344444333222221 11
Q ss_pred HHHHHHhhHHHHHHHH-------------HHcC----------CCC--C-ChhhHHHHHHHHHHHHHcCCCCC--CCCCc
Q psy16945 145 IQQVLAKYRPLFQYVS-------------QHAG----------EPV--E-TITDLEFIHNTLFIEEINNLTLP--EWTHP 196 (395)
Q Consensus 145 ~~~~~~~~~~~~~~l~-------------~~~g----------~~~--~-~~~~~~~~~D~l~~~~~~~~~lp--~w~~~ 196 (395)
..++...++.+.+.+. .... ..+ . .+.-...++|++.+++.+|+++| .|++.
T Consensus 174 ~~~l~~~~~~L~~vld~~~s~~C~~~~~c~~~~~~~~~~~~~~~~~~~~G~~~~a~~l~D~l~lqy~~G~~l~~~~W~~~ 253 (413)
T PRK10173 174 KLQLTPSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEI 253 (413)
T ss_pred hccccHHHHHHHHHhCcccCccCCCCCCCcCcCCCCceeecCCCCccccCchhhhhhHHHHHHHHHHhcCCCCCCCcccc
Confidence 1111111222111110 0001 000 0 12334678999999999999865 99976
Q ss_pred cchh---hHHHHHHhhcccccchHhHhHhhhchHHHHHHHHHHHhhcCCCCCceEEEEeechHhHHHHHHHhCCCCCCCC
Q psy16945 197 IYPE---PLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIFDLHCP 273 (395)
Q Consensus 197 ~~~~---~l~~l~~~~~~~~~~~~~~~~l~~g~ll~~il~~~~~~~~~~~~~~k~~~ys~HD~ti~~ll~aLg~~~~~~p 273 (395)
.+.+ .+..+.+..+...+.++++++..|+|||+.|.+.+.. .+... +|+++|||||+||++++++||+++..+|
T Consensus 254 ~t~~~~~~l~~L~~~~~~~~~~tp~~ar~~g~pLL~~i~~~L~~--~~~~~-~Kl~lysgHDtnIa~ll~ALgl~~~~lP 330 (413)
T PRK10173 254 KTDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVKYIDKALVT--DRASA-PKVTVLVGHDSNIASLLTALDFKPYQLH 330 (413)
T ss_pred CCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhc--CCCCC-CCEEEEEEccccHHHHHHHhCCCccccC
Confidence 4444 4444555555556788899999999999999777762 22223 7999999999999999999999977676
Q ss_pred ------CchheeeeEEEeeC--CcceEEEEEeCCC------------CCCC--eeeeCCCCC----CCCChHHHHHHhhh
Q psy16945 274 ------PYTAAVMIELHQKD--DEYYVNILYKNST------------SVPP--YQLSIPGCD----FDCPLDDFVSLTQD 327 (395)
Q Consensus 274 ------pyas~l~~El~~~~--~~~~Vr~~y~~~~------------~~~~--~~l~l~gC~----~~Cpl~~F~~~~~~ 327 (395)
||||+|+||+|+++ |+++|||.|.-++ ..+| +++.+|||+ +.|||++|.+.+++
T Consensus 331 ~~~~~~P~g~~LvFEl~~d~~~~~~~Vkv~y~~qs~~qlRn~~~l~~~~pP~~~~l~lpGC~~~~~~~Cpl~~F~~~~~~ 410 (413)
T PRK10173 331 DQYERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPPQRVTLELKGCPIDANGFCPMDKFDSVLNE 410 (413)
T ss_pred CCCCcCCccceEEEEEEEeCCCCCeEEEEEEEecchHhhhccccccccCCCccccccCCCCCCCCCCcCCHHHHHHHHHH
Confidence 99999999999985 7788999644332 1234 577999997 59999999999987
Q ss_pred cc
Q psy16945 328 VV 329 (395)
Q Consensus 328 ~~ 329 (395)
.+
T Consensus 411 ~~ 412 (413)
T PRK10173 411 AA 412 (413)
T ss_pred Hh
Confidence 54
No 5
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=100.00 E-value=5.3e-43 Score=324.33 Aligned_cols=217 Identities=35% Similarity=0.605 Sum_probs=184.7
Q ss_pred eEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcC-CCCCceEEEEecCchh
Q psy16945 2 TYHISFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGD-SYSKENVYVMSTDVDR 80 (395)
Q Consensus 2 ~L~~V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~-~y~~~~i~vrST~~~R 80 (395)
+|++|+|++|||+|+| |+||+.|++|++++|++||++|.+++.. .|++++++||||+.+|
T Consensus 1 ~L~~v~~~~RHg~r~p-------------------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~R 61 (242)
T cd07061 1 ELEQVQVLSRHGDRYP-------------------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQR 61 (242)
T ss_pred CeEEEEEEEecCCCCc-------------------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcH
Confidence 6999999999999998 8999999999999999999999977653 6889999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCCCCCCCCcccceEEecCCCcccccCCCCCChHHHHHHHHHhCCHHHHHHHHhhHHHHHHHH
Q psy16945 81 TLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVS 160 (395)
Q Consensus 81 Ti~SA~a~l~GL~p~~~~~~~~~~~~~qpipi~t~~~~~D~ll~~~~~Cp~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~ 160 (395)
|++||++|+.||||+.. |||+||++++...|
T Consensus 62 t~~Sa~~~~~gl~~~~~---------~~~~~i~~~~~~~~---------------------------------------- 92 (242)
T cd07061 62 TLQSAQAFLAGLFPPDG---------WQPIAVHTIPEEED---------------------------------------- 92 (242)
T ss_pred HHHHHHHHHHhcCCCcc---------cCCCceEEecCCCc----------------------------------------
Confidence 99999999999999864 67899998876555
Q ss_pred HHcCCCCCChhhHHHHHHHHHHHHHcCCCCCCCCC---ccchhhHHHHHHhhccccc-chHhHhHhhhchHHHHHHHHHH
Q psy16945 161 QHAGEPVETITDLEFIHNTLFIEEINNLTLPEWTH---PIYPEPLRTVAAFSFAIPA-RTPALKRLKAGPLVEDIVKHMV 236 (395)
Q Consensus 161 ~~~g~~~~~~~~~~~~~D~l~~~~~~~~~lp~w~~---~~~~~~l~~l~~~~~~~~~-~~~~~~~l~~g~ll~~il~~~~ 236 (395)
++..++|.|.++.+++.+.+.|+. .+.+..++++.+..+.+.+ ..+++++..|++++++|++.|+
T Consensus 93 -----------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ll~~i~~~l~ 161 (242)
T cd07061 93 -----------DVSNLFDLCAYETVAKGYSAPFCDLFTEEEWVKLEYLNDLKFYYGYGPGNPLARAQGSPLLNELLARLT 161 (242)
T ss_pred -----------hHHHHHHHCHHHHHhcCCCChhhcccCHHHHhhcchHhHHHHHhccCCCCcchHHhhHHHHHHHHHHHh
Confidence 667789999999998876545553 3444455666666655544 3477899999999999999999
Q ss_pred HhhcCCC---CCceEEEEeechHhHHHHHHHhCCCC---------------CCCCCchheeeeEEEee--CCcceEEEEE
Q psy16945 237 AKSKDKL---KKKKIWIYSAHDTTVANLLNTLNIFD---------------LHCPPYTAAVMIELHQK--DDEYYVNILY 296 (395)
Q Consensus 237 ~~~~~~~---~~~k~~~ys~HD~ti~~ll~aLg~~~---------------~~~ppyas~l~~El~~~--~~~~~Vr~~y 296 (395)
....+.. .+.|+++|||||+||++++++||+.+ ..+|||||+|+||+|+| +++++||++|
T Consensus 162 ~~~~~~~~~~~~~k~~l~saHD~ti~~ll~~LGl~~~~~~~~~~~~~~~~~~~~pP~as~l~fEl~~~~~~~~~~VRv~~ 241 (242)
T cd07061 162 NGPSGSQTFPLDRKLYLYFSHDTTILPLLTALGLFDFAEPLPPDFLRGFSESDYPPFAARLVFELWRCPGDGESYVRVLV 241 (242)
T ss_pred CCCCccccCCCCCeEEEEeEccchHHHHHHHhCCCcCCCCCCCCCCCceeeecccCCcceEEEEEEECCCCCceeEEEEe
Confidence 8776531 13899999999999999999999998 67999999999999999 4889999998
Q ss_pred e
Q psy16945 297 K 297 (395)
Q Consensus 297 ~ 297 (395)
|
T Consensus 242 N 242 (242)
T cd07061 242 N 242 (242)
T ss_pred C
Confidence 6
No 6
>KOG1382|consensus
Probab=100.00 E-value=4.6e-36 Score=286.42 Aligned_cols=314 Identities=21% Similarity=0.313 Sum_probs=237.4
Q ss_pred eEEEEEEEecCCCCCCCCC--------------C---------CCC------CCCCCCCC-CCCcCcccHHHHHHHHHHH
Q psy16945 2 TYHISFQLYRHGDRTPINF--------------Y---------PND------PYKNASYW-PVGPGQLTNVGKLQHYKLG 51 (395)
Q Consensus 2 ~L~~V~vv~RHG~R~P~~~--------------~---------p~d------~~~~~~~w-~~~~G~LT~~G~~q~~~LG 51 (395)
+.++|++|.|||.|+|..+ + |.+ ++.+.+.| +...|+|-.+|...+.+++
T Consensus 62 ~p~qv~~l~RHGtR~PT~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~~a 141 (467)
T KOG1382|consen 62 EPKQVQLLIRHGTRYPTKSVIAKIVSLAYKLKNYTRDQLGRSSPLNDDYEFFILDWSKLEMEVTEAELVDQLEDEGRMLA 141 (467)
T ss_pred ceeeeeeehhcCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccchhcccccccchhhhhhhhHHHHH
Confidence 5689999999999999743 0 111 11111212 2357778888777777777
Q ss_pred HHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHHHHHcccCCCCCCCCCCCCCCcccceEEecCCCcccccCCCCCChH
Q psy16945 52 QWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMKKPCPQ 131 (395)
Q Consensus 52 ~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~p~~~~~~~~~~~~~qpipi~t~~~~~D~ll~~~~~Cp~ 131 (395)
.++++++..++-+-||+.-..|++|..+||..||++|+.|||...... ...|.+...--+..+| |++++.||+
T Consensus 142 ~R~~r~f~~~y~~~~n~~~y~i~tt~~~R~~dSA~~F~~GLfg~~~~~-----~t~~~~~E~~~~gan~--Lr~y~~Cp~ 214 (467)
T KOG1382|consen 142 KRLARRFPALYYELENPTVYNINTTASQRVVDSAQAFAYGLFGEDHFN-----ITLQTVSEAPSAGAND--LRFYNSCPK 214 (467)
T ss_pred HHHHHHHHHHHHhhcCCceEEeeccchHHHHHHHHHHHhhhccccccC-----CCceeeeccCCCCcch--hhhhhcCcc
Confidence 777777776665567889999999999999999999999999865432 1122222211122344 788899999
Q ss_pred HHHHHHHHhCCHHHHHHHH--hhHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCCCCCCCCc---cchhhHHHHH
Q psy16945 132 YDVEKRKYMNSPEIQQVLA--KYRPLFQYVSQHAGEPVETITDLEFIHNTLFIEEINNLTLPEWTHP---IYPEPLRTVA 206 (395)
Q Consensus 132 ~~~~~~~~~~s~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~~~~~~~D~l~~~~~~~~~lp~w~~~---~~~~~l~~l~ 206 (395)
++...++. ......++.. .+.++.++|++..+....+..|+..++..|..|.+..-.-.+||+- +....+++..
T Consensus 215 ~k~~~~k~-t~~~~~~~~~~~~l~~I~~rl~k~~~~~nLt~~Di~~lf~~C~yE~a~~~~~S~~C~iFt~~e~~~~EY~~ 293 (467)
T KOG1382|consen 215 WKTDVNKT-TDDILEKFLTEPYLNPIAKRLNKRNDLLNLTNADISSLFFWCAYEIALKGYRSDWCDIFTPDELLVFEYLE 293 (467)
T ss_pred hhcccccc-chHHHHHHhcchhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccCcCHHHHhHhhhhh
Confidence 98876641 2233334333 3578888999888775557789999999999988754444788863 4455667778
Q ss_pred Hhhcccc-cchHhHhHhhhchHHHHHHHHHHHhhcCCCCCceEEEEeechHhHHHHHHHhCCCCC---------------
Q psy16945 207 AFSFAIP-ARTPALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIFDL--------------- 270 (395)
Q Consensus 207 ~~~~~~~-~~~~~~~~l~~g~ll~~il~~~~~~~~~~~~~~k~~~ys~HD~ti~~ll~aLg~~~~--------------- 270 (395)
|+.+++. .++.++.+..|++|++++++.|++..+.... .|+++.++||+||++++++||++.+
T Consensus 294 DL~~yy~~GyGy~~~~~~g~~l~ndl~~~L~~~~~~~~~-~kV~L~FtHdt~Ilp~lt~lG~f~D~~plt~~~~~~~~~~ 372 (467)
T KOG1382|consen 294 DLEYYYGDGYGYELNSSLGCPLFNDLLKSLRESEEQDQD-QKVWLSFTHDTTILPLLTALGLFDDKTPLTALHVDKQIHT 372 (467)
T ss_pred hHHHHhccCCCcchHhhhccHHHHHHHHHHhhhhccccc-ccEEEEeecccchHHHHHHhccccCCCcCccccccccccc
Confidence 8876654 4778899999999999999999988776553 8999999999999999999999864
Q ss_pred ----CCCCchheeeeEEEeeC-CcceEEEEEeCCCCCCCeeeeCCCCC----CCCChHHHHHHhhhccC
Q psy16945 271 ----HCPPYTAAVMIELHQKD-DEYYVNILYKNSTSVPPYQLSIPGCD----FDCPLDDFVSLTQDVVL 330 (395)
Q Consensus 271 ----~~ppyas~l~~El~~~~-~~~~Vr~~y~~~~~~~~~~l~l~gC~----~~Cpl~~F~~~~~~~~~ 330 (395)
.+.|||+++++|+|+|+ ++++||++.|.+ ++.+++|+ ..|++.+|.++++....
T Consensus 373 ~~~S~~vPfa~Nlitely~C~~~k~yVr~l~Ne~------Vvpl~~C~~gp~~Sc~l~~f~~y~~~~v~ 435 (467)
T KOG1382|consen 373 RHRSWIVPFAANLITELYQCSANKYYVRVLVNEQ------VVPLPGCSVGPGFSCELEDFYAYANNPVR 435 (467)
T ss_pred cchhhccccccceEEEEEeCCCCCeeeEEEecCc------eeECCCCCCCCcccchHHHHHHHHhcchh
Confidence 47899999999999999 999999999887 57899998 38999999999976643
No 7
>KOG3672|consensus
Probab=99.98 E-value=1.6e-31 Score=247.25 Aligned_cols=310 Identities=23% Similarity=0.322 Sum_probs=221.2
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCCCC-----------------------CCCCCC----------------CCCcCcccH
Q psy16945 1 MTYHISFQLYRHGDRTPINFYPNDPY-----------------------KNASYW----------------PVGPGQLTN 41 (395)
Q Consensus 1 ~~L~~V~vv~RHG~R~P~~~~p~d~~-----------------------~~~~~w----------------~~~~G~LT~ 41 (395)
++|+.|.||.|||||+|+...+.+-. ....|| .|..|+||.
T Consensus 92 ~KL~gV~vviRHGdR~Pvs~V~~~kI~C~~s~~~d~~~f~~~~~~~~s~s~~~~~~~~~pl~~~Pl~P~~~~C~~G~LT~ 171 (487)
T KOG3672|consen 92 LKLRGVTVVIRHGDRSPVSKVEDDKIGCLASRDVDRKAFVAYKELAESDSIKAFLKLDPPLKQYPLVPLVSKCVSGMLTA 171 (487)
T ss_pred eEEEEEEEEEEcCCcCCceecccCCcceeeecCCCcchhhhhHHHhhcccccccccccCccccCCcCcCcCCCcccceeH
Confidence 58999999999999999865443210 011233 267999999
Q ss_pred HHHHHHHHHHHHHHHHhh-h---hhcCCCCCceEEEEecCchhHHHHHHHHHcccCCCCCCCCCCCCCCcccceEEecCC
Q psy16945 42 VGKLQHYKLGQWFGERYR-D---LIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPE 117 (395)
Q Consensus 42 ~G~~q~~~LG~~lR~rY~-~---~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~p~~~~~~~~~~~~~qpipi~t~~~ 117 (395)
.|..||..+|+.+|++|- . ..++...-++.+|.+|.++||++||.|++-|+.|... |-||.|...
T Consensus 172 ~G~~QhL~~G~~~r~~Y~k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~~---------w~~i~iR~s-- 240 (487)
T KOG3672|consen 172 EGALQHLRLGKYFRHRYEKTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRTF---------WAPIQIRAS-- 240 (487)
T ss_pred HhHHHHHhhhHHHHHHHhhccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchhh---------hheeeeecC--
Confidence 999999999999999997 2 2344466688899999999999999999999998643 666666432
Q ss_pred CcccccC-CCCCChHHHHHHHHHhCCHHHHHHHHhh-HHHHHHHHHHcCCC-CCChhhHHHHHHHHHHHHHcCCCCCCCC
Q psy16945 118 KLDKVLS-MKKPCPQYDVEKRKYMNSPEIQQVLAKY-RPLFQYVSQHAGEP-VETITDLEFIHNTLFIEEINNLTLPEWT 194 (395)
Q Consensus 118 ~~D~ll~-~~~~Cp~~~~~~~~~~~s~~~~~~~~~~-~~~~~~l~~~~g~~-~~~~~~~~~~~D~l~~~~~~~~~lp~w~ 194 (395)
....+. +.+.||.-....+..+. ..++..++.- .++.+...+..-.+ +....+..++.|.+.|-.||+.++|+--
T Consensus 241 -~s~~fC~g~C~Cp~~~~~r~~~e~-~~~~q~lk~~~~dv~~~~~~~~~~~~p~~~~~pf~~ID~ll~~~Ch~~tlPCrr 318 (487)
T KOG3672|consen 241 -NSSYFCIGQCACPIHKSIRRIYEE-EHLQQFLKMKSDDVADEEKKFLSFPQPAASFDPFQMIDVLLSFICHRKTLPCRR 318 (487)
T ss_pred -cccceecccccchHHHHHHHHHHH-HHHHHHHhcchHHHHhhhcceeeecccccccCchhHHHHHHHhhhccCcccccc
Confidence 233444 57889987777654432 3445444432 44444444322111 1124567789999999999999999865
Q ss_pred Cc-cchhhHHHHHHhhcccc--cchHh------HhHhhhchHHHHHHHHHHHhhcCCCCCceEEEEeechHhHHHHHHHh
Q psy16945 195 HP-IYPEPLRTVAAFSFAIP--ARTPA------LKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTL 265 (395)
Q Consensus 195 ~~-~~~~~l~~l~~~~~~~~--~~~~~------~~~l~~g~ll~~il~~~~~~~~~~~~~~k~~~ys~HD~ti~~ll~aL 265 (395)
+. ..++.++.+.+....-. -..++ +..+.+-|.++..+++++...++... .-+.+|||||.|+.+++.+|
T Consensus 319 k~cv~~~~f~k~~n~~~~d~~~~~~de~~~~~~~~~~~a~pils~~~~~~n~~~~~~~~-~~~~i~s~HdvTl~p~l~~L 397 (487)
T KOG3672|consen 319 KECVTLDSFNKMINLTTSDGSRMFDDEIGVARRLQSMEAYPILSYLRDSVNKIRKFPHS-NYIQIFSGHDVTLGPILRVL 397 (487)
T ss_pred ccccchHHHhhhcceeechhhhhhhhHHHHHHHHhhcccCCCcchhhhccCccccCChh-heeeeeccccchhhHHHHHh
Confidence 42 34445555444332210 01122 22344668899999999887776554 78999999999999999999
Q ss_pred CCCCCCCCCchheeeeEEEeeC-CcceEEEEEeCCCCCCCeeeeCCCCC---------CCCChHHHHHHhhhc
Q psy16945 266 NIFDLHCPPYTAAVMIELHQKD-DEYYVNILYKNSTSVPPYQLSIPGCD---------FDCPLDDFVSLTQDV 328 (395)
Q Consensus 266 g~~~~~~ppyas~l~~El~~~~-~~~~Vr~~y~~~~~~~~~~l~l~gC~---------~~Cpl~~F~~~~~~~ 328 (395)
|+.....|.|++.++||+|+.. ...+||++||+.. .+..+..|+ -.||++......+..
T Consensus 398 g~~~a~~p~y~~r~vfe~y~~~~~~~s~r~lyng~d----~T~~i~fcqd~~~~~~~~~~~~~~nl~~~~k~~ 466 (487)
T KOG3672|consen 398 GIPFADPPHYTSRIVFEIYEHSDDGLSIRTLYNGRD----KTYNIRFCQDDHTKRSMKPATPLENLVRFVKRD 466 (487)
T ss_pred CCCcCCCcchhhhhhHHhhhccccceEEEEEEecCc----ceEEEEeccCccccccCcccChHHHHHHHHHHH
Confidence 9999999999999999999987 7889999999986 355555665 367888877766544
No 8
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.13 E-value=1.3e-09 Score=93.01 Aligned_cols=71 Identities=34% Similarity=0.483 Sum_probs=58.0
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
++++.|||.|.+..... ++....+.||+.|.+|...+|++|+++| .....|+||+..||.+||
T Consensus 1 ~i~liRHg~~~~~~~~~--------~~~~~d~~Lt~~G~~qa~~l~~~l~~~~---------~~~~~v~sSp~~R~~~Ta 63 (153)
T cd07040 1 VLYLVRHGEREPNAEGR--------FTGWGDGPLTEKGRQQARELGKALRERY---------IKFDRIYSSPLKRAIQTA 63 (153)
T ss_pred CEEEEeCCCCccccCCC--------ccCCCCCCcCHHHHHHHHHHHHHHHHhC---------CCCCEEEECChHHHHHHH
Confidence 36799999999864321 1223577899999999999999999988 233578999999999999
Q ss_pred HHHHcccC
Q psy16945 86 EANLAGFF 93 (395)
Q Consensus 86 ~a~l~GL~ 93 (395)
+.++.+++
T Consensus 64 ~~~~~~~~ 71 (153)
T cd07040 64 EIILEGLF 71 (153)
T ss_pred HHHHHHhc
Confidence 99999997
No 9
>KOG1057|consensus
Probab=99.03 E-value=3.8e-10 Score=113.80 Aligned_cols=62 Identities=29% Similarity=0.538 Sum_probs=54.9
Q ss_pred cCcccHHHHHHHHHHHHHHHHHhh-----hhh--cCCCCCceEEEEecCchhHHHHHHHHHcccCCCCCC
Q psy16945 36 PGQLTNVGKLQHYKLGQWFGERYR-----DLI--GDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGD 98 (395)
Q Consensus 36 ~G~LT~~G~~q~~~LG~~lR~rY~-----~~l--~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~p~~~~ 98 (395)
.|+||+.|+.|.-+||+.+|..|. +|| ..+| ..++.|+|++--|+.|||+||..||+..++.
T Consensus 509 GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~-rhDlKIYaSdEgRVqmtAaaFAkgLL~lEge 577 (1018)
T KOG1057|consen 509 GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTY-RHDLKIYASDEGRVQMTAAAFAKGLLALEGE 577 (1018)
T ss_pred CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhh-hccceeEecCcchHHHHHHHHHHHHHhhccC
Confidence 689999999999999999999997 443 3445 6789999999999999999999999998775
No 10
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=97.25 E-value=0.00036 Score=59.37 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=46.8
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||.+.-... ..+.. |.. ..||+.|..|...+|+.|.+. ...--.|.||+..||++||+
T Consensus 2 i~liRHg~~~~n~~---~~~~~---~~d--~~Lt~~G~~qA~~~~~~l~~~---------~~~~~~i~~Sp~~R~~qTA~ 64 (158)
T PF00300_consen 2 IYLIRHGESEFNAE---GRVQG---DSD--PPLTERGREQARQLGEYLAER---------DIQIDVIYSSPLRRCIQTAE 64 (158)
T ss_dssp EEEEE-S-BHHHHT---TBCGT---TSS--TGBEHHHHHHHHHHHHHHHHT---------TSSCSEEEEESSHHHHHHHH
T ss_pred EEEEECCccccccC---CCcCC---CCC--ccccHHHHHHHHhhccccccc---------ccCceEEecCCcchhhhhhc
Confidence 46889999883110 11111 222 259999999999999998871 12223488999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+..++
T Consensus 65 ~~~~~~ 70 (158)
T PF00300_consen 65 IIAEGL 70 (158)
T ss_dssp HHHHHH
T ss_pred hhhccc
Confidence 988865
No 11
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=96.81 E-value=0.0048 Score=52.33 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=48.9
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||......... .. ....-.||+.|++|...+|++|++.- ..+ -.|.||+..||++||+
T Consensus 2 i~liRHg~~~~~~~~~---~~-----~~~d~~Lt~~G~~qa~~~~~~l~~~~-------~~~--~~i~~Sp~~Ra~qTa~ 64 (153)
T cd07067 2 LYLVRHGESEWNAEGR---FQ-----GWTDVPLTEKGREQARALGKRLKELG-------IKF--DRIYSSPLKRAIQTAE 64 (153)
T ss_pred EEEEECCCCcccccCc---cc-----CCCCCCCCHHHHHHHHHHHHHHHhcC-------CCC--CEEEECcHHHHHHHHH
Confidence 4689999876432110 00 01123599999999999999998632 112 3588999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+..++
T Consensus 65 ~l~~~~ 70 (153)
T cd07067 65 IILEEL 70 (153)
T ss_pred HHHHhc
Confidence 998877
No 12
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=96.67 E-value=0.007 Score=51.61 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=48.3
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||...-.. .+.+.. | ..-.||+.|++|...+|++|++.- + ..--.|.||+..||++||+
T Consensus 2 i~lvRHG~s~~n~---~~~~~g---~--~d~~Lt~~G~~qa~~~a~~l~~~~----~----~~~~~i~sSpl~Ra~qTa~ 65 (155)
T smart00855 2 LYLIRHGETEANR---EGRLTG---W--TDSPLTELGRAQAEALGELLASLG----R----LRFDVIYSSPLLRARETAE 65 (155)
T ss_pred EEEEeCCCCcccc---cCeEcC---C--CCCCCCHHHHHHHHHHHHHHHhcc----C----CCCCEEEeCchHHHHHHHH
Confidence 4689999955221 011110 1 233599999999999999987641 1 1223588999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+...+
T Consensus 66 ~i~~~~ 71 (155)
T smart00855 66 ALAIAL 71 (155)
T ss_pred HHHHhc
Confidence 987655
No 13
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=96.41 E-value=0.0091 Score=52.07 Aligned_cols=65 Identities=22% Similarity=0.052 Sum_probs=45.8
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHHH
Q psy16945 8 QLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEA 87 (395)
Q Consensus 8 vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a 87 (395)
.+.|||.-.-... ..+ . + ....||+.|++|...+|++|+. . .. -.|+||+..||++||+.
T Consensus 2 ~lvRHg~t~~n~~---~~~-g---~--~d~~Lt~~G~~qa~~l~~~l~~-------~--~~--~~i~sSpl~Ra~qTA~~ 61 (177)
T TIGR03162 2 YLIRHGETDVNAG---LCY-G---Q--TDVPLAEKGAEQAAALREKLAD-------V--PF--DAVYSSPLSRCRELAEI 61 (177)
T ss_pred EEEeCCCCccCCC---cee-C---C--CCCCcChhHHHHHHHHHHHhcC-------C--CC--CEEEECchHHHHHHHHH
Confidence 5789999552211 111 0 1 1345999999999999999862 1 11 25889999999999999
Q ss_pred HHccc
Q psy16945 88 NLAGF 92 (395)
Q Consensus 88 ~l~GL 92 (395)
+...+
T Consensus 62 i~~~~ 66 (177)
T TIGR03162 62 LAERR 66 (177)
T ss_pred HHhhc
Confidence 87643
No 14
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=96.34 E-value=0.016 Score=51.53 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
..++.|||.+- -. . .++ .. ...-.||+.|++|...+|++|++.- .. ..|.||+..||.+||
T Consensus 56 ~L~LiRHGet~-~~-~-~~~-~~-----sD~RpLTerG~~qA~~lg~~L~~~~---------~~-d~I~sSpa~Ra~qTA 116 (201)
T PRK15416 56 VVVLFRHAERC-DR-S-DNQ-CL-----SDKTGITVKGTQDARELGKAFSADI---------PD-YDLYSSNTVRTIQSA 116 (201)
T ss_pred EEEEEeCcccc-Cc-c-CCC-CC-----CCCCCCCHHHHHHHHHHHHHHhCCC---------CC-CEEEECCCHHHHHHH
Confidence 46789999961 00 0 000 00 0113599999999999999998531 11 267999999999999
Q ss_pred HHHHc
Q psy16945 86 EANLA 90 (395)
Q Consensus 86 ~a~l~ 90 (395)
+.+..
T Consensus 117 e~ia~ 121 (201)
T PRK15416 117 TWFSA 121 (201)
T ss_pred HHHhc
Confidence 99855
No 15
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=96.18 E-value=0.018 Score=51.68 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=50.9
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
-..+.|||...-.. ...+.. | ...-||+.|.+|...+|+.|+.. ......|+|++..||++||
T Consensus 4 ~i~lvRHGqt~~n~---~~~~~G---~--~d~pLt~~G~~QA~~l~~~l~~~---------~~~~~~i~sS~l~Ra~~TA 66 (208)
T COG0406 4 RLYLVRHGETEWNV---EGRLQG---W--TDSPLTEEGRAQAEALAERLAAR---------DIGFDAIYSSPLKRAQQTA 66 (208)
T ss_pred EEEEEecCCccccc---cccccC---C--CCCCCCHHHHHHHHHHHHHHhhc---------CCCCCEEEECchHHHHHHH
Confidence 46789999988531 111110 1 12269999999999999999976 1223456999999999999
Q ss_pred HHHHccc
Q psy16945 86 EANLAGF 92 (395)
Q Consensus 86 ~a~l~GL 92 (395)
+..+..+
T Consensus 67 ~~~a~~~ 73 (208)
T COG0406 67 EPLAEEL 73 (208)
T ss_pred HHHHHhc
Confidence 9999877
No 16
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=96.00 E-value=0.028 Score=50.22 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=46.2
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||....... .-+.. | ..-.||+.|++|...+|++|+.. . .+ .|+||+..||++||+
T Consensus 3 i~lvRHG~t~~n~~---~~~~G---~--~d~pLt~~G~~Qa~~~~~~l~~~-------~--~~--~i~sSpl~Ra~qTA~ 63 (199)
T PRK15004 3 LWLVRHGETQANVD---GLYSG---H--APTPLTARGIEQAQNLHTLLRDV-------P--FD--LVLCSELERAQHTAR 63 (199)
T ss_pred EEEEeCCCCccccC---CcEeC---C--CCCCcCHHHHHHHHHHHHHHhCC-------C--CC--EEEECchHHHHHHHH
Confidence 56899998553211 11111 1 12359999999999999998631 1 12 489999999999999
Q ss_pred HHHcc
Q psy16945 87 ANLAG 91 (395)
Q Consensus 87 a~l~G 91 (395)
.++.+
T Consensus 64 ~i~~~ 68 (199)
T PRK15004 64 LVLSD 68 (199)
T ss_pred HHHhc
Confidence 98764
No 17
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=95.99 E-value=0.027 Score=53.65 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=49.1
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHH
Q psy16945 5 ISFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMS 84 (395)
Q Consensus 5 ~V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~S 84 (395)
.-.++.|||.-. ... .. ....--||+.|++|...+|++|++.+...-. ++..+ .|+|++..||.+|
T Consensus 103 ~~L~LVRHGq~~----~~~--~~-----d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~-~~~~d--~IysSPL~RA~qT 168 (299)
T PTZ00122 103 RQIILVRHGQYI----NES--SN-----DDNIKRLTELGKEQARITGKYLKEQFGEILV-DKKVK--AIYHSDMTRAKET 168 (299)
T ss_pred eEEEEEECCCCC----CCC--CC-----CcccCCCCHHHHHHHHHHHHHHHHhhccccc-cCCCC--EEEEcCcHHHHHH
Confidence 456789999911 111 00 0112349999999999999999986431100 01122 5889999999999
Q ss_pred HHHHHccc
Q psy16945 85 AEANLAGF 92 (395)
Q Consensus 85 A~a~l~GL 92 (395)
|+.++.++
T Consensus 169 AeiIa~~~ 176 (299)
T PTZ00122 169 AEIISEAF 176 (299)
T ss_pred HHHHHHhC
Confidence 99998664
No 18
>PRK03482 phosphoglycerate mutase; Provisional
Probab=95.94 E-value=0.033 Score=50.33 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=47.2
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
...+.|||...-... ..+.. + ....||+.|++|...+|++|++. .+ + .|+||+..||++||
T Consensus 3 ~i~lvRHG~t~~n~~---~~~~g---~--~d~~Lt~~G~~qA~~~~~~l~~~-------~~--~--~I~sSpl~Ra~qTA 63 (215)
T PRK03482 3 QVYLVRHGETQWNAE---RRIQG---Q--SDSPLTAKGEQQAMQVAERAKEL-------GI--T--HIISSDLGRTRRTA 63 (215)
T ss_pred EEEEEeCCCcccccc---cccCC---C--CCCCcCHHHHHHHHHHHHHHhcC-------CC--C--EEEECCcHHHHHHH
Confidence 357899999643211 11111 1 13469999999999999998641 11 1 68899999999999
Q ss_pred HHHHccc
Q psy16945 86 EANLAGF 92 (395)
Q Consensus 86 ~a~l~GL 92 (395)
+.+...+
T Consensus 64 ~~i~~~~ 70 (215)
T PRK03482 64 EIIAQAC 70 (215)
T ss_pred HHHHHhc
Confidence 9987543
No 19
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=95.94 E-value=0.034 Score=50.89 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=46.9
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||...-.. ..-+.. |. .-.||+.|++|...+|++|++. +..+ -.|+||+..||++||+
T Consensus 4 l~LVRHGeT~~N~---~~~~~G---~~--D~pLt~~G~~QA~~l~~~L~~~-----~~~~----d~i~sSpL~Ra~qTA~ 66 (228)
T PRK14116 4 LVLIRHGQSEWNL---SNQFTG---WV--DVDLSEKGVEEAKKAGRLIKEA-----GLEF----DQAYTSVLTRAIKTLH 66 (228)
T ss_pred EEEEeCCCCCCcc---ccCcCC---CC--CCCcCHHHHHHHHHHHHHHHhc-----CCCC----CEEEECChHHHHHHHH
Confidence 5788999754321 111111 22 2359999999999999999852 0011 1589999999999999
Q ss_pred HHHcc
Q psy16945 87 ANLAG 91 (395)
Q Consensus 87 a~l~G 91 (395)
.++.+
T Consensus 67 ~i~~~ 71 (228)
T PRK14116 67 YALEE 71 (228)
T ss_pred HHHHh
Confidence 98764
No 20
>PRK01295 phosphoglyceromutase; Provisional
Probab=95.79 E-value=0.037 Score=49.80 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-.-.. ..-+.. |+ ...||+.|.+|...+|++|+.... ... .|+||+..||++||+
T Consensus 5 i~LVRHGet~~n~---~~~~~G---~~--d~~Lt~~G~~qA~~~~~~L~~~~~-------~~d--~i~sSpl~Ra~qTA~ 67 (206)
T PRK01295 5 LVLVRHGQSEWNL---KNLFTG---WR--DPDLTEQGVAEAKAAGRKLKAAGL-------KFD--IAFTSALSRAQHTCQ 67 (206)
T ss_pred EEEEeCCCCcccc---cCCcCC---CC--CCCcCHHHHHHHHHHHHHHHhCCC-------CCC--EEEeCCcHHHHHHHH
Confidence 5689999743211 011111 22 235999999999999999986321 112 488999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+...+
T Consensus 68 ~i~~~~ 73 (206)
T PRK01295 68 LILEEL 73 (206)
T ss_pred HHHHHc
Confidence 997654
No 21
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=95.62 E-value=0.054 Score=49.52 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=46.4
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||.-.-.. ..-++. |. .-.||+.|.+|...+|++|+.. + ... -.|+||+..||++||+
T Consensus 4 l~LvRHGeT~~N~---~~~~~G---~~--D~pLt~~G~~QA~~l~~~L~~~-----~--~~~--d~i~sSpL~Ra~~TA~ 66 (228)
T PRK14119 4 LILCRHGQSEWNA---KNLFTG---WE--DVNLSEQGINEATRAGEKVREN-----N--IAI--DVAFTSLLTRALDTTH 66 (228)
T ss_pred EEEEeCCCCCccc---CCCccC---CC--CCCcCHHHHHHHHHHHHHHHhc-----C--CCC--CEEEeCccHHHHHHHH
Confidence 5788999843211 111111 22 2359999999999999998752 1 111 2589999999999999
Q ss_pred HHHcc
Q psy16945 87 ANLAG 91 (395)
Q Consensus 87 a~l~G 91 (395)
.+...
T Consensus 67 ~i~~~ 71 (228)
T PRK14119 67 YILTE 71 (228)
T ss_pred HHHHh
Confidence 98764
No 22
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=95.59 E-value=0.052 Score=50.31 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=46.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||...-.. . .-+.. |. .-.||+.|.+|...+|++|++. .+... .|+||+..||++||+
T Consensus 3 i~LVRHGqt~~n~--~-~~~~G---~~--D~pLte~G~~QA~~la~~L~~~-------~~~~d--~IysSpl~Ra~qTA~ 65 (247)
T PRK14115 3 LVLIRHGESQWNK--E-NRFTG---WT--DVDLSEKGVSEAKAAGKLLKEE-------GYTFD--VAYTSVLKRAIRTLW 65 (247)
T ss_pred EEEEECCCccccc--c-cCcCC---CC--CCCcCHHHHHHHHHHHHHHHhc-------CCCCC--EEEEcCCHHHHHHHH
Confidence 5689999843211 0 01111 11 2359999999999999998752 11122 589999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+..++
T Consensus 66 ~i~~~~ 71 (247)
T PRK14115 66 IVLDEL 71 (247)
T ss_pred HHHHHc
Confidence 987644
No 23
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=95.56 E-value=0.058 Score=46.04 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=47.5
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||.-..-.. .| ..-.||+.|++|...+|++|++.- +.+. .|.||+..||++||+
T Consensus 3 l~LvRHg~a~~~~~--~d----------~dr~Lt~~G~~qa~~~~~~l~~~~-------~~~d--~i~sSp~~Ra~qTa~ 61 (152)
T TIGR00249 3 LFIMRHGDAALDAA--SD----------SVRPLTTNGCDESRLVAQWLKGQG-------VEIE--RILVSPFVRAEQTAE 61 (152)
T ss_pred EEEEeCCCcccccC--CC----------CCCCcCHHHHHHHHHHHHHHHhCC-------CCCC--EEEECCcHHHHHHHH
Confidence 56889998432211 11 123599999999999999997631 1122 588999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+...+
T Consensus 62 ~l~~~~ 67 (152)
T TIGR00249 62 IVGDCL 67 (152)
T ss_pred HHHHHc
Confidence 998776
No 24
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=95.55 E-value=0.05 Score=50.37 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=47.0
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-.-.. . .-+.. |. .-.||+.|.+|...+|++|+..- .... .|+||+..||++||+
T Consensus 3 l~lVRHGqt~~n~--~-~~~~G---~~--D~~Lt~~G~~QA~~la~~L~~~~-------~~~d--~iysSpl~Ra~qTA~ 65 (245)
T TIGR01258 3 LVLVRHGESEWNA--L-NLFTG---WV--DVKLSEKGQQEAKRAGELLKEEG-------YEFD--VAYTSLLKRAIHTLN 65 (245)
T ss_pred EEEEeCCCcCccc--c-CCcCC---CC--CCCcCHHHHHHHHHHHHHHHhcC-------CCCC--EEEEcChHHHHHHHH
Confidence 4688999733211 0 11111 11 34799999999999999997521 1112 589999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+..++
T Consensus 66 ii~~~~ 71 (245)
T TIGR01258 66 IALDEL 71 (245)
T ss_pred HHHHhc
Confidence 997654
No 25
>PRK01112 phosphoglyceromutase; Provisional
Probab=95.52 E-value=0.05 Score=49.79 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=46.1
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||....... .-+.. |. ...||+.|.+|...+|++|+. ++ . -.|+|++..||++||+
T Consensus 4 L~LvRHGqt~~n~~---~~~~G---~~--D~~Lte~G~~Qa~~l~~~L~~-----~~----~--d~iysSpl~Ra~qTA~ 64 (228)
T PRK01112 4 LILLRHGQSVWNAK---NLFTG---WV--DIPLSQQGIAEAIAAGEKIKD-----LP----I--DCIFTSTLVRSLMTAL 64 (228)
T ss_pred EEEEeCCCCccccc---cccCC---CC--CCCcCHHHHHHHHHHHHHhhc-----CC----C--CEEEEcCcHHHHHHHH
Confidence 46889996443211 00110 11 236999999999999999875 11 1 2589999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.++..+
T Consensus 65 ~i~~~~ 70 (228)
T PRK01112 65 LAMTNH 70 (228)
T ss_pred HHHHhh
Confidence 887533
No 26
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=95.49 E-value=0.062 Score=49.87 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=45.9
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||...-.. . .-+.. |. .-.||+.|++|...+|+.|+.. ..... .|+||+..||++||+
T Consensus 7 i~LVRHGqt~~n~--~-~~~~G---~~--D~pLTe~G~~QA~~~a~~l~~~-------~~~~~--~IysSpl~Ra~qTA~ 69 (249)
T PRK14120 7 LVLLRHGESEWNA--K-NLFTG---WV--DVDLTEKGEAEAKRGGELLAEA-------GVLPD--VVYTSLLRRAIRTAN 69 (249)
T ss_pred EEEEeCCCCcccc--c-CCcCC---CC--CCCcCHHHHHHHHHHHHHHHhc-------CCCCC--EEEecChHHHHHHHH
Confidence 5689999854211 1 11111 11 2359999999999999998742 11122 589999999999999
Q ss_pred HHHcc
Q psy16945 87 ANLAG 91 (395)
Q Consensus 87 a~l~G 91 (395)
.++.+
T Consensus 70 ~i~~~ 74 (249)
T PRK14120 70 LALDA 74 (249)
T ss_pred HHHHh
Confidence 88653
No 27
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=95.48 E-value=0.073 Score=48.63 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=46.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-.-... .-++. |. .-.||+.|.+|...+|++|++.- ... -.|+||+..||.+||+
T Consensus 3 l~LvRHG~t~~n~~---~~~~G---~~--d~~Lt~~G~~qa~~~~~~l~~~~-------~~~--d~i~sSpl~Ra~~TA~ 65 (227)
T PRK14118 3 LVFIRHGFSEWNAK---NLFTG---WR--DVNLTERGVEEAKAAGKKLKEAG-------YEF--DIAFTSVLTRAIKTCN 65 (227)
T ss_pred EEEEecCCCccccc---cCcCC---CC--CCCCCHHHHHHHHHHHHHHHhcC-------CCC--CEEEEeChHHHHHHHH
Confidence 56899997432110 00111 11 23599999999999999998621 111 2589999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+...+
T Consensus 66 ~i~~~~ 71 (227)
T PRK14118 66 IVLEES 71 (227)
T ss_pred HHHHhc
Confidence 987643
No 28
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=95.46 E-value=0.072 Score=47.68 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHHHHHccc
Q psy16945 38 QLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGF 92 (395)
Q Consensus 38 ~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL 92 (395)
.||+.|.+|...+|++|+.. ... .|+||+..||++||+.+..++
T Consensus 26 ~Lt~~G~~qa~~l~~~l~~~---------~~~--~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 26 DLDERGREQAAALAERLADL---------PIA--AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred CcCHHHHHHHHHHHHHHhcC---------CCC--EEEeCcHHHHHHHHHHHHHhc
Confidence 59999999999999998731 112 488999999999999998654
No 29
>PRK13463 phosphatase PhoE; Provisional
Probab=95.22 E-value=0.069 Score=47.85 Aligned_cols=66 Identities=26% Similarity=0.262 Sum_probs=45.3
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
...+.|||...-.. ..-+.. | ..-.||+.|.+|...+|++|+.. ..+ .|+||+..||++||
T Consensus 4 ~i~lvRHG~t~~n~---~~~~~G---~--~d~~Lt~~G~~Qa~~~~~~l~~~---------~~~--~i~sSpl~Ra~qTA 64 (203)
T PRK13463 4 TVYVTRHGETEWNV---AKRMQG---R--KNSALTENGILQAKQLGERMKDL---------SIH--AIYSSPSERTLHTA 64 (203)
T ss_pred EEEEEeCCCCccch---hCcccC---C--CCCCcCHHHHHHHHHHHHHhcCC---------CCC--EEEECCcHHHHHHH
Confidence 46789999854321 011111 1 13469999999999999988631 122 47899999999999
Q ss_pred HHHHc
Q psy16945 86 EANLA 90 (395)
Q Consensus 86 ~a~l~ 90 (395)
+.+..
T Consensus 65 ~~i~~ 69 (203)
T PRK13463 65 ELIKG 69 (203)
T ss_pred HHHHh
Confidence 98754
No 30
>PRK06193 hypothetical protein; Provisional
Probab=95.15 E-value=0.1 Score=46.88 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=47.2
Q ss_pred EEEEEecCCCCCCCCC--CCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHH
Q psy16945 5 ISFQLYRHGDRTPINF--YPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTL 82 (395)
Q Consensus 5 ~V~vv~RHG~R~P~~~--~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi 82 (395)
.+.++.|||...+... +..+. . . ....-.||+.|.+|...+|++|++.- +.++ .|.||+..||.
T Consensus 43 ~~L~LvRHGet~~n~~~~~~gd~-d--~--~~~~rpLt~~G~~qA~~l~~~L~~~~-------~~~d--~V~sSpl~Ra~ 108 (206)
T PRK06193 43 GYVIYFRHAATDRSQADQDTSDM-D--D--CSTQRNLSEEGREQARAIGEAFRALA-------IPVG--KVISSPYCRAW 108 (206)
T ss_pred CEEEEEeCccCCCCccCCccccc-c--c--CcCCCCCCHHHHHHHHHHHHHHHhcC-------CCCC--EEEECCcHHHH
Confidence 3678999999543211 11110 0 0 00134799999999999999998631 1223 48899999999
Q ss_pred HHHHHHH
Q psy16945 83 MSAEANL 89 (395)
Q Consensus 83 ~SA~a~l 89 (395)
+||+.+.
T Consensus 109 qTA~il~ 115 (206)
T PRK06193 109 ETAQLAF 115 (206)
T ss_pred HHHHHHh
Confidence 9999754
No 31
>PRK13462 acid phosphatase; Provisional
Probab=95.11 E-value=0.11 Score=46.62 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=43.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-..... .-+.. |. .-.||+.|.+|...+|+.|+.. .++. -.|+||+..||.+||+
T Consensus 8 i~LvRHG~t~~n~~---~~~~G---~~--d~pLt~~G~~QA~~l~~~l~~~-------~~~~--~~i~sSpl~Ra~qTA~ 70 (203)
T PRK13462 8 LLLLRHGETEWSKS---GRHTG---RT--ELELTETGRTQAELAGQALGEL-------ELDD--PLVISSPRRRALDTAK 70 (203)
T ss_pred EEEEeCCCCCcccC---CCccC---CC--CCCCCHHHHHHHHHHHHHHHhC-------CCCC--CEEEECchHHHHHHHH
Confidence 46889999542211 11111 11 2249999999999999988642 1211 1589999999999999
Q ss_pred HH
Q psy16945 87 AN 88 (395)
Q Consensus 87 a~ 88 (395)
.+
T Consensus 71 ~i 72 (203)
T PRK13462 71 LA 72 (203)
T ss_pred Hh
Confidence 76
No 32
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=95.03 E-value=0.13 Score=44.28 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-..-. ..| ..-.||+.|++|...+|++|+..- ..+ =.|.||+..||.+||+
T Consensus 3 l~lvRHg~a~~~~--~~d----------~~rpLt~~G~~qa~~~~~~l~~~~-------~~~--d~i~sSp~~Ra~qTa~ 61 (159)
T PRK10848 3 VFIMRHGDAALDA--ASD----------SVRPLTTCGCDESRLMANWLKGQK-------VDI--ERVLVSPYLRAEQTLE 61 (159)
T ss_pred EEEEeCCCCCCCC--CCC----------cCCCcCHHHHHHHHHHHHHHHhCC-------CCC--CEEEECCHHHHHHHHH
Confidence 4678999854211 011 123599999999999999998631 112 2589999999999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
.+...+
T Consensus 62 ~l~~~~ 67 (159)
T PRK10848 62 VVGECL 67 (159)
T ss_pred HHHHHh
Confidence 987665
No 33
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=94.76 E-value=0.097 Score=51.57 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=48.4
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHH
Q psy16945 6 SFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSA 85 (395)
Q Consensus 6 V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA 85 (395)
-..+.|||...-... ..+.. ...-.||+.|.+|...+|+.|++.. . .+ .|+||+..||++||
T Consensus 173 ~i~LvRHGet~~n~~---~~~~g-----~~D~~Lt~~G~~QA~~l~~~l~~~~------~--~d--~i~sSpl~Ra~qTA 234 (372)
T PRK07238 173 RLLLLRHGQTELSVQ---RRYSG-----RGNPELTEVGRRQAAAAARYLAARG------G--ID--AVVSSPLQRARDTA 234 (372)
T ss_pred EEEEEeCCCCCcccC---CeeeC-----CCCCCcCHHHHHHHHHHHHHHhccC------C--CC--EEEECChHHHHHHH
Confidence 467889999653210 01110 1134699999999999999997641 1 11 58999999999999
Q ss_pred HHHHccc
Q psy16945 86 EANLAGF 92 (395)
Q Consensus 86 ~a~l~GL 92 (395)
+.+..++
T Consensus 235 ~~i~~~~ 241 (372)
T PRK07238 235 AAAAKAL 241 (372)
T ss_pred HHHHHhc
Confidence 9988765
No 34
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=94.64 E-value=0.16 Score=46.52 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=45.5
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
.++.|||.-.-.. ..-++. |. .-.||+.|++|...+|++|++.. ... -.|+||+..||.+||+
T Consensus 4 l~LvRHG~t~~n~---~~~~qG---~~--D~~Lt~~G~~qa~~~~~~l~~~~-------~~~--~~i~sSpl~Ra~~TA~ 66 (230)
T PRK14117 4 LVFARHGESEWNK---ANLFTG---WA--DVDLSEKGTQQAIDAGKLIKEAG-------IEF--DLAFTSVLKRAIKTTN 66 (230)
T ss_pred EEEEeCccccCcc---cCCcCC---CC--CCCcCHHHHHHHHHHHHHHHHcC-------CCC--CEEEECCcHHHHHHHH
Confidence 5688999844221 111111 22 23499999999999999988521 111 2488999999999999
Q ss_pred HHHc
Q psy16945 87 ANLA 90 (395)
Q Consensus 87 a~l~ 90 (395)
.++.
T Consensus 67 ~i~~ 70 (230)
T PRK14117 67 LALE 70 (230)
T ss_pred HHHH
Confidence 8764
No 35
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=93.91 E-value=0.23 Score=42.71 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=52.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.=.+...--.| ..-.||+.|+++...+|++|+++=. .++ .|-+|+.-||.+||+
T Consensus 4 L~LmRHgkA~~~~~~~~D----------~dR~Lt~~G~~ea~~~a~~L~~~~~-------~~D--~VL~Spa~Ra~QTae 64 (163)
T COG2062 4 LYLMRHGKAEWAAPGIAD----------FDRPLTERGRKEAELVAAWLAGQGV-------EPD--LVLVSPAVRARQTAE 64 (163)
T ss_pred EEEeecccccccCCCCCC----------ccCcCCHHHHHHHHHHHHHHHhcCC-------CCC--EEEeChhHHHHHHHH
Confidence 368899998876432112 2345999999999999999998753 122 378899999999999
Q ss_pred HHHcccC
Q psy16945 87 ANLAGFF 93 (395)
Q Consensus 87 a~l~GL~ 93 (395)
.+...+-
T Consensus 65 ~v~~~~~ 71 (163)
T COG2062 65 IVAEHLG 71 (163)
T ss_pred HHHHhhC
Confidence 9999886
No 36
>KOG0235|consensus
Probab=93.51 E-value=0.17 Score=45.54 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=51.6
Q ss_pred EEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHH
Q psy16945 4 HISFQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLM 83 (395)
Q Consensus 4 ~~V~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~ 83 (395)
.+-.|+.|||.-.-... .-++. |- .-.||+.|.+|+..+|++|+.+=. ....+.|++..|+.+
T Consensus 5 ~~~lvlvRHGes~wN~e---~~~~G---~~--D~~Lte~G~~qA~~~~~~l~~~~~---------~~~~~~tS~l~Rakq 67 (214)
T KOG0235|consen 5 TFRLVLVRHGESEWNKE---NIFQG---WI--DAPLTEKGEEQAKAAAQRLKDLNI---------EFDVCYTSDLKRAKQ 67 (214)
T ss_pred ceEEEEEecCchhhhhh---Ccccc---cc--cCccChhhHHHHHHHHHHHHhcCC---------cccEEecCHHHHHHH
Confidence 35578999998753211 01111 32 228999999999999999887632 222338899999999
Q ss_pred HHHHHHcccC
Q psy16945 84 SAEANLAGFF 93 (395)
Q Consensus 84 SA~a~l~GL~ 93 (395)
+|+.++...-
T Consensus 68 T~~~il~~~~ 77 (214)
T KOG0235|consen 68 TAELILEELK 77 (214)
T ss_pred HHHHHHHhhc
Confidence 9999999885
No 37
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=93.17 E-value=0.16 Score=46.69 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=38.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHHHHHcccC
Q psy16945 37 GQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFF 93 (395)
Q Consensus 37 G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~ 93 (395)
-.||+.|.+|...+|+.|+.. ..... .|+||+..||++||+.+..++-
T Consensus 13 ~pLTe~G~~QA~~l~~~L~~~-------~~~~d--~iysSpl~Ra~qTA~~i~~~~~ 60 (236)
T PTZ00123 13 VPLSEKGVQEAREAGKLLKEK-------GFRFD--VVYTSVLKRAIKTAWIVLEELG 60 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhc-------CCCCC--EEEECChHHHHHHHHHHHHhcC
Confidence 359999999999999999852 11112 5889999999999999997763
No 38
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=91.30 E-value=0.49 Score=50.36 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=46.6
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
..+.|||.-..... . . + +|.-.||+.|.+|...||++|++.. ......|+||+..||.+||+
T Consensus 422 i~LiRHGeT~~n~~---~-----r-~-~Gd~pLt~~G~~qA~~l~~~l~~~~--------~~~~~~V~sSpl~Ra~~TA~ 483 (664)
T PTZ00322 422 LYLTRAGEYVDLLS---G-----R-I-GGNSRLTERGRAYSRALFEYFQKEI--------STTSFTVMSSCAKRCTETVH 483 (664)
T ss_pred EEEEecccchhhhc---C-----c-c-CCCCccCHHHHHHHHHHHHHHHhcc--------CCCCcEEEcCCcHHHHHHHH
Confidence 56889998443210 0 1 1 2345799999999999999887531 01234799999999999999
Q ss_pred HHHc
Q psy16945 87 ANLA 90 (395)
Q Consensus 87 a~l~ 90 (395)
.+..
T Consensus 484 ~i~~ 487 (664)
T PTZ00322 484 YFAE 487 (664)
T ss_pred HHHh
Confidence 8754
No 39
>KOG4754|consensus
Probab=91.17 E-value=1.1 Score=40.02 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=54.2
Q ss_pred EEEEEEecCCCCCCCCCCCCCCCCCCCCCCC--CcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceE-EEEecCchh
Q psy16945 4 HISFQLYRHGDRTPINFYPNDPYKNASYWPV--GPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENV-YVMSTDVDR 80 (395)
Q Consensus 4 ~~V~vv~RHG~R~P~~~~p~d~~~~~~~w~~--~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i-~vrST~~~R 80 (395)
.+.+.+.|||-=.-... +...|+ .||.. -...||+.|.+|.-.|++.+...=. +..| -|.++..-|
T Consensus 14 ~KtiyLvRHgQg~HNV~-g~~~h~--ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL--------~~~ieliv~SPMrR 82 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVA-GEEDHK--AYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQL--------PNKIELIVVSPMRR 82 (248)
T ss_pred ceEEEEEeccccccccC-cccchh--hhhhhhccccccCHHHHHHHHHHhhhhhhhhc--------CCceeEEEechHHH
Confidence 35677889997664321 112222 23433 2567999999999999996554321 1122 367889999
Q ss_pred HHHHHHHHHcccCCCCC
Q psy16945 81 TLMSAEANLAGFFPPKG 97 (395)
Q Consensus 81 Ti~SA~a~l~GL~p~~~ 97 (395)
|++||..-+.|-.-.++
T Consensus 83 tLqT~v~~f~~~~~e~g 99 (248)
T KOG4754|consen 83 TLQTMVIAFGGYLAEDG 99 (248)
T ss_pred HHHHHHHHhcceeccCC
Confidence 99999988888744343
No 40
>KOG3734|consensus
Probab=89.93 E-value=0.16 Score=47.17 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHHHHHcccC
Q psy16945 39 LTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFF 93 (395)
Q Consensus 39 LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~a~l~GL~ 93 (395)
||..|..|+...|+.|+.+=. .+ -.+..+...||++||-..+.|+=
T Consensus 70 it~~g~~~~~~~gr~l~~a~~-------~i--~~ifcSPs~r~VqTa~~i~~~~g 115 (272)
T KOG3734|consen 70 ITVSGFIQCKLIGRELLNAGI-------AI--DVIFCSPSLRCVQTAAKIKKGLG 115 (272)
T ss_pred ccchhHHHHHHHHHHHHhcCC-------Cc--ceeecCCchhHHHHHHHHHHhhc
Confidence 899999999999998877542 11 24678899999999999999984
No 41
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=89.08 E-value=0.58 Score=35.22 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=24.5
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccc
Q psy16945 359 TI-VLLTMGVLLTLLLVSLVFYVHKQWRHPSSHMYQR 394 (395)
Q Consensus 359 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (395)
++ .++|+++.+|+++.+++||.+|++.+|+= ||-
T Consensus 34 gm~~lvI~~iFil~VilwfvCC~kRkrsRrPI--YrP 68 (94)
T PF05393_consen 34 GMWFLVICGIFILLVILWFVCCKKRKRSRRPI--YRP 68 (94)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccCCc--ccc
Confidence 44 45555555777888888999888888776 764
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.39 E-value=1 Score=36.78 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccC
Q psy16945 358 ATIVLLTMGVLLTLLLVSLVFYVHKQWRH 386 (395)
Q Consensus 358 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
.+|++.+++.++.+++++.+++||+|+|.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35555555545444433333444444443
No 43
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=83.96 E-value=1 Score=41.75 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy16945 357 FATIVLLTMGVLLTLLLVSLVFYVHKQW 384 (395)
Q Consensus 357 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 384 (395)
+.||..++++++.+++++++||.+|||+
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3377444444444445555555544444
No 44
>PTZ00370 STEVOR; Provisional
Probab=83.01 E-value=1.2 Score=41.50 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHhCC---HHHHHHHHhhHHHHHHHHH
Q psy16945 126 KKPCPQYDVEKRKYMNS---PEIQQVLAKYRPLFQYVSQ 161 (395)
Q Consensus 126 ~~~Cp~~~~~~~~~~~s---~~~~~~~~~~~~~~~~l~~ 161 (395)
+++-|...+.+++. +. ..||+..++|.++-+.+.+
T Consensus 53 YdNDpemK~i~d~~-n~eaikkyqqT~~~f~e~~e~~~k 90 (296)
T PTZ00370 53 YHNDPELKEIIDKM-NEEAIKKYQQTHDPYEQLKEVVEK 90 (296)
T ss_pred CCCcHHHHHHHHHH-hHHHhhhhhhhcchHHHHHHHHHh
Confidence 56677766665542 22 2344444455555555543
No 45
>PHA02650 hypothetical protein; Provisional
Probab=82.68 E-value=4 Score=30.16 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=12.4
Q ss_pred CChHHHHHHhhhccCC
Q psy16945 316 CPLDDFVSLTQDVVLT 331 (395)
Q Consensus 316 Cpl~~F~~~~~~~~~~ 331 (395)
=.+++|.+.++.++.+
T Consensus 18 dDFnnFI~VVkSVLtD 33 (81)
T PHA02650 18 DDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4578888888888776
No 46
>KOG4609|consensus
Probab=82.35 E-value=2 Score=38.34 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=47.6
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
+++.|||.-.-. + ....||+.|++|.-..|++|++.=.+|- .|..+...|+.++|.
T Consensus 97 I~LiRHgeY~~~------g---------~~~hLTelGReQAE~tGkRL~elglk~d---------~vv~StM~RA~ETad 152 (284)
T KOG4609|consen 97 IFLIRHGEYHVD------G---------SLEHLTELGREQAELTGKRLAELGLKFD---------KVVASTMVRATETAD 152 (284)
T ss_pred EEEEeccceecc------C---------chhhcchhhHHHHHHHhHHHHHcCCchh---------hhhhhhhhhhHHHHH
Confidence 457799875422 1 1337999999999999999998644331 256778899999999
Q ss_pred HHHcccC
Q psy16945 87 ANLAGFF 93 (395)
Q Consensus 87 a~l~GL~ 93 (395)
-.+.-|=
T Consensus 153 IIlk~l~ 159 (284)
T KOG4609|consen 153 IILKHLP 159 (284)
T ss_pred HHHHhCC
Confidence 9999884
No 47
>PF15102 TMEM154: TMEM154 protein family
Probab=82.34 E-value=1 Score=37.64 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhcccccC
Q psy16945 365 MGVLLTLLLVSLVFYVHKQWRH 386 (395)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
+++||+.++++.++++|||.+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHheeEEeecccCC
Confidence 3334444455555555555554
No 48
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.68 E-value=3.3 Score=26.15 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=8.9
Q ss_pred HHHHHhhhcccccC
Q psy16945 373 LVSLVFYVHKQWRH 386 (395)
Q Consensus 373 ~~~~~~~~~~~~~~ 386 (395)
+..+.|++||.+++
T Consensus 23 ~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 23 MFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHcccccc
Confidence 33456777777765
No 49
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=80.27 E-value=0.27 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy16945 357 FATIVLLTMGVLLTLLLVSLVFYVHK 382 (395)
Q Consensus 357 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 382 (395)
++++++.+.++++.++++|+++|||+
T Consensus 14 a~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEechHHHHHHHHHHhheEEecc
Confidence 44555555555554444444444443
No 50
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=73.48 E-value=8.2 Score=28.17 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=15.7
Q ss_pred ChHHHHHHhhhccCCChhHHHhcccC
Q psy16945 317 PLDDFVSLTQDVVLTDTQWEVACHAH 342 (395)
Q Consensus 317 pl~~F~~~~~~~~~~~~d~~~~C~~~ 342 (395)
.+++|.+.++.++.+ +..|..+
T Consensus 19 Df~~Fi~vVksVltd----k~~~~~~ 40 (72)
T PF12575_consen 19 DFNNFINVVKSVLTD----KKKLKNN 40 (72)
T ss_pred HHHHHHHHHHHHHcC----Ccccccc
Confidence 678888888888876 3455544
No 51
>PHA02692 hypothetical protein; Provisional
Probab=70.91 E-value=13 Score=26.92 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=12.7
Q ss_pred ChHHHHHHhhhccCC
Q psy16945 317 PLDDFVSLTQDVVLT 331 (395)
Q Consensus 317 pl~~F~~~~~~~~~~ 331 (395)
.+++|.+.++.++.+
T Consensus 19 DF~~Fi~vVksVLtD 33 (70)
T PHA02692 19 DFEEFLNIVRTVMTE 33 (70)
T ss_pred HHHHHHHHHHHHHcC
Confidence 688888888888877
No 52
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=69.32 E-value=4.8 Score=38.28 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHHHHh--CCHHHHHHHHhhHHHHHHHHHHcCC
Q psy16945 125 MKKPCPQYDVEKRKYM--NSPEIQQVLAKYRPLFQYVSQHAGE 165 (395)
Q Consensus 125 ~~~~Cp~~~~~~~~~~--~s~~~~~~~~~~~~~~~~l~~~~g~ 165 (395)
.+++-|...+.++.+. .++.|+++.+++++-.++..+....
T Consensus 30 nYDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcDK 72 (299)
T PF02009_consen 30 NYDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCDK 72 (299)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcc
Confidence 4788888877766542 2455666556555555666555543
No 53
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=68.43 E-value=7.6 Score=32.25 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=9.8
Q ss_pred HhhhccCCChhHHHhcccCCC
Q psy16945 324 LTQDVVLTDTQWEVACHAHHF 344 (395)
Q Consensus 324 ~~~~~~~~~~d~~~~C~~~~~ 344 (395)
+++++.+. .+- ||-.+..
T Consensus 5 ffqpvyp~--~y~-ecls~~~ 22 (189)
T PF05568_consen 5 FFQPVYPR--HYG-ECLSPVT 22 (189)
T ss_pred cccccchh--hhh-hhcCCCC
Confidence 44555555 443 7876644
No 54
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=67.75 E-value=5.6 Score=38.01 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=7.8
Q ss_pred hhcccccCCCCCCcccC
Q psy16945 379 YVHKQWRHPSSHMYQRI 395 (395)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ 395 (395)
|.-.|+|.+.+ ||.|
T Consensus 292 Yli~Rrr~~~g--Yq~~ 306 (306)
T PF01299_consen 292 YLIGRRRSRAG--YQSI 306 (306)
T ss_pred heeEecccccc--cccC
Confidence 33344444447 9875
No 55
>PHA02844 putative transmembrane protein; Provisional
Probab=66.69 E-value=16 Score=26.67 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=12.5
Q ss_pred CChHHHHHHhhhccCC
Q psy16945 316 CPLDDFVSLTQDVVLT 331 (395)
Q Consensus 316 Cpl~~F~~~~~~~~~~ 331 (395)
=.+++|.+.++.++.+
T Consensus 18 dDFnnFI~vVksVLtd 33 (75)
T PHA02844 18 EDFNNFIDVVKSVLSD 33 (75)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4578888888888876
No 56
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=65.79 E-value=2.3 Score=30.27 Aligned_cols=6 Identities=17% Similarity=0.539 Sum_probs=0.4
Q ss_pred hhhccc
Q psy16945 378 FYVHKQ 383 (395)
Q Consensus 378 ~~~~~~ 383 (395)
.||.|+
T Consensus 33 iyR~rk 38 (64)
T PF01034_consen 33 IYRMRK 38 (64)
T ss_dssp ----S-
T ss_pred HHHHHh
Confidence 344333
No 57
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=63.81 E-value=8.7 Score=35.85 Aligned_cols=29 Identities=31% Similarity=0.600 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCC
Q psy16945 359 TIVLLTMGVLLTLLLVSLVFYVHKQWRHP 387 (395)
Q Consensus 359 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
.+|++|++|+|+++++|+--.|++.|+|-
T Consensus 265 alvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 36777777778888888888888888774
No 58
>PHA03054 IMV membrane protein; Provisional
Probab=62.62 E-value=21 Score=25.89 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.7
Q ss_pred CChHHHHHHhhhccCC
Q psy16945 316 CPLDDFVSLTQDVVLT 331 (395)
Q Consensus 316 Cpl~~F~~~~~~~~~~ 331 (395)
-.+++|.+.++.++.+
T Consensus 18 ~Df~~Fi~vV~sVl~d 33 (72)
T PHA03054 18 DDLTDFIEIVKSVLSD 33 (72)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4577888888877766
No 59
>PTZ00370 STEVOR; Provisional
Probab=60.50 E-value=8.8 Score=35.88 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy16945 358 ATIVLLTMGVLLTLLLVSLVFYVHKQW 384 (395)
Q Consensus 358 ~~i~~~~~~~~~~~~~~~~~~~~~~~~ 384 (395)
.||..++++++.+++++++||.+|||+
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 377444444444444555555444443
No 60
>PHA02819 hypothetical protein; Provisional
Probab=59.33 E-value=30 Score=25.06 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=10.9
Q ss_pred CChHHHHHHhhhccCC
Q psy16945 316 CPLDDFVSLTQDVVLT 331 (395)
Q Consensus 316 Cpl~~F~~~~~~~~~~ 331 (395)
=.+++|.+.++.++.+
T Consensus 18 dDFnnFI~VVksVLtd 33 (71)
T PHA02819 18 DDFNNFINVVKSVLNN 33 (71)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 3567777777777654
No 61
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=56.55 E-value=3.6 Score=38.81 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q psy16945 361 VLLTMGVLLTLLLVSLVFYVHKQW 384 (395)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~ 384 (395)
.++|++++|+++++.++||||||.
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 444445555555666667776554
No 62
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=50.57 E-value=35 Score=24.50 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhccccc
Q psy16945 368 LLTLLLVSLVFYVHKQWR 385 (395)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (395)
+.++.++++-.|.|++..
T Consensus 12 Vaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 12 VAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 333333334445554444
No 63
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=50.11 E-value=27 Score=26.53 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy16945 356 SFATIVLLTMGVLLTLLLVSLVFYVHK 382 (395)
Q Consensus 356 ~~~~i~~~~~~~~~~~~~~~~~~~~~~ 382 (395)
+.+|++++++.++++.++++++-+|+|
T Consensus 73 TlFgLiPFL~Gc~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 73 TLFGLIPFLAGCLILGVIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466889999999999988887655544
No 64
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=48.14 E-value=6 Score=36.71 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccccCCCC
Q psy16945 372 LLVSLVFYVHKQWRHPSS 389 (395)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~ 389 (395)
.++-++||||||+.|+.+
T Consensus 241 aVGGLLfYr~rrRs~~e~ 258 (285)
T PF05337_consen 241 AVGGLLFYRRRRRSHREP 258 (285)
T ss_dssp ------------------
T ss_pred hccceeeecccccccccc
Confidence 566678888888888665
No 65
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.79 E-value=28 Score=23.21 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy16945 372 LLVSLVF 378 (395)
Q Consensus 372 ~~~~~~~ 378 (395)
.++++.+
T Consensus 24 gi~~w~~ 30 (49)
T PF05545_consen 24 GIVIWAY 30 (49)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.46 E-value=35 Score=25.28 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHHHHHH-hhhcccccC
Q psy16945 368 LLTLLLVSLV-FYVHKQWRH 386 (395)
Q Consensus 368 ~~~~~~~~~~-~~~~~~~~~ 386 (395)
+++++..+++ .|+.|++..
T Consensus 14 ~ifVap~wl~lHY~~k~~~~ 33 (75)
T TIGR02976 14 VIFVAPLWLILHYRSKRKTA 33 (75)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 3333444444 455444443
No 67
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=43.37 E-value=42 Score=30.26 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=47.4
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 7 FQLYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 7 ~vv~RHG~R~P~~~~p~d~~~~~~~w~~~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
-|+.|||.---... + -|. - |- .=.||+.|..|...-|+.|++.=. .---++++-..|++.+++
T Consensus 4 Lvl~RHGqSeWN~~--N-lFt--G-W~--Dv~LtekG~~EA~~ag~llk~~~~---------~~dia~TS~L~RAi~T~~ 66 (230)
T COG0588 4 LVLLRHGQSEWNKE--N-LFT--G-WV--DVDLTEKGISEAKAAGKLLKEEGL---------EFDIAYTSVLKRAIKTLN 66 (230)
T ss_pred EEEEecCchhhhhc--C-cee--e-ee--ecCcchhhHHHHHHHHHHHHHcCC---------CcceeehHHHHHHHHHHH
Confidence 47889997442210 0 000 0 32 346999999999999999998532 112356778899999999
Q ss_pred HHHccc
Q psy16945 87 ANLAGF 92 (395)
Q Consensus 87 a~l~GL 92 (395)
-.+.-+
T Consensus 67 i~L~e~ 72 (230)
T COG0588 67 IVLEES 72 (230)
T ss_pred HHhhhh
Confidence 998877
No 68
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.05 E-value=38 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=5.1
Q ss_pred HHHHHHH-hhhcc
Q psy16945 371 LLLVSLV-FYVHK 382 (395)
Q Consensus 371 ~~~~~~~-~~~~~ 382 (395)
++..+++ .|+.|
T Consensus 17 Vap~WL~lHY~sk 29 (75)
T PF06667_consen 17 VAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444 44444
No 69
>PHA02975 hypothetical protein; Provisional
Probab=43.01 E-value=60 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.411 Sum_probs=12.0
Q ss_pred CChHHHHHHhhhccCC
Q psy16945 316 CPLDDFVSLTQDVVLT 331 (395)
Q Consensus 316 Cpl~~F~~~~~~~~~~ 331 (395)
=.+++|.+.++.++.+
T Consensus 18 dDF~nFI~vVksVLtd 33 (69)
T PHA02975 18 SDFEDFIDTIMHVLTG 33 (69)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3577888888888766
No 70
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=27 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.2
Q ss_pred eeeEEEeeC-CcceEEEEEeCCC
Q psy16945 279 VMIELHQKD-DEYYVNILYKNST 300 (395)
Q Consensus 279 l~~El~~~~-~~~~Vr~~y~~~~ 300 (395)
.-||+|++. |+|-.|+.+.|..
T Consensus 3 ~kfei~kdk~Ge~rfrlkA~N~e 25 (59)
T COG3422 3 GKFEIYKDKAGEYRFRLKAANGE 25 (59)
T ss_pred ceEEEEEcCCCcEEEEEEccCcc
Confidence 359999998 9999999996654
No 71
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=41.29 E-value=32 Score=33.34 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.7
Q ss_pred CCCCChHHHHHHHHH
Q psy16945 125 MKKPCPQYDVEKRKY 139 (395)
Q Consensus 125 ~~~~Cp~~~~~~~~~ 139 (395)
.+++-|.....++.+
T Consensus 53 nYDNDPeMK~Vm~nF 67 (353)
T TIGR01477 53 NYDNDPEMKSVMEQF 67 (353)
T ss_pred cCCCcHHHHHHHHHH
Confidence 467777777666543
No 72
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=41.10 E-value=5.1 Score=31.90 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy16945 359 TIVLLTMGVLLTLLLVSLVFYVH 381 (395)
Q Consensus 359 ~i~~~~~~~~~~~~~~~~~~~~~ 381 (395)
||+++|+++|| +++-|.|.||
T Consensus 30 GiL~VILgiLL--liGCWYckRR 50 (118)
T PF14991_consen 30 GILIVILGILL--LIGCWYCKRR 50 (118)
T ss_dssp S----------------------
T ss_pred eeHHHHHHHHH--HHhheeeeec
Confidence 55555555444 4443333333
No 73
>PTZ00046 rifin; Provisional
Probab=40.94 E-value=33 Score=33.40 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=9.7
Q ss_pred CCCCChHHHHHHHHH
Q psy16945 125 MKKPCPQYDVEKRKY 139 (395)
Q Consensus 125 ~~~~Cp~~~~~~~~~ 139 (395)
.+++-|.....++.+
T Consensus 50 nYDNDPeMK~Vme~F 64 (358)
T PTZ00046 50 NYDNDPEMKSVMENF 64 (358)
T ss_pred CCCCcHHHHHHHHHH
Confidence 377777777666543
No 74
>PF15050 SCIMP: SCIMP protein
Probab=39.93 E-value=24 Score=28.38 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.1
Q ss_pred HHHHHHhhhcc
Q psy16945 372 LLVSLVFYVHK 382 (395)
Q Consensus 372 ~~~~~~~~~~~ 382 (395)
++++.+||.+|
T Consensus 22 ~lglIlyCvcR 32 (133)
T PF15050_consen 22 VLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHH
Confidence 44445554443
No 75
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=37.23 E-value=26 Score=30.52 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q psy16945 357 FATIVLLTM 365 (395)
Q Consensus 357 ~~~i~~~~~ 365 (395)
+.+|+++++
T Consensus 81 ivgvi~~Vi 89 (179)
T PF13908_consen 81 IVGVICGVI 89 (179)
T ss_pred eeehhhHHH
Confidence 334443333
No 76
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=35.86 E-value=9.7 Score=30.96 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=5.7
Q ss_pred hhHHHhcccCCC
Q psy16945 333 TQWEVACHAHHF 344 (395)
Q Consensus 333 ~d~~~~C~~~~~ 344 (395)
.+++.-|.....
T Consensus 61 S~~C~~C~a~p~ 72 (129)
T PF12191_consen 61 SPFCQGCPAAPP 72 (129)
T ss_dssp -CCCCCHSS-SS
T ss_pred CccccCCCCCCC
Confidence 456666665544
No 77
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=34.79 E-value=47 Score=27.17 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=7.2
Q ss_pred HHHHHHHhhhcccccCC
Q psy16945 371 LLLVSLVFYVHKQWRHP 387 (395)
Q Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (395)
...++++|.+.||++-|
T Consensus 116 s~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 116 TCCLLSVYRFTRRTKLP 132 (139)
T ss_pred HHHHHhhheeeecccCc
Confidence 33344444444444433
No 78
>PHA03049 IMV membrane protein; Provisional
Probab=34.19 E-value=88 Score=22.42 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy16945 362 LLTMGVLLTLLL 373 (395)
Q Consensus 362 ~~~~~~~~~~~~ 373 (395)
++++++.++.++
T Consensus 7 l~iICVaIi~lI 18 (68)
T PHA03049 7 LVIICVVIIGLI 18 (68)
T ss_pred HHHHHHHHHHHH
Confidence 334443433333
No 79
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.84 E-value=72 Score=23.58 Aligned_cols=23 Identities=9% Similarity=-0.053 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccC
Q psy16945 364 TMGVLLTLLLVSLVFYVHKQWRH 386 (395)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
+++.+++++-.++++-++.+++.
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccC
Confidence 33334444555555444444444
No 80
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=32.56 E-value=64 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=18.1
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q psy16945 359 TI-VLLTMGVLLTLLLVSLVFYVHKQWRHPSSHMYQ 393 (395)
Q Consensus 359 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (395)
|| +--+++.+|+++..++....|||.++..+++|=
T Consensus 38 GiV~~D~vlTLLIv~~vy~car~r~r~~~~~~kvYi 73 (79)
T PF07213_consen 38 GIVAADAVLTLLIVLVVYYCARPRRRPTQEDDKVYI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCcccCCEEEE
Confidence 44 334444455444444444555555556666664
No 81
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=30.31 E-value=21 Score=27.48 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=4.9
Q ss_pred HHhhhcccc
Q psy16945 376 LVFYVHKQW 384 (395)
Q Consensus 376 ~~~~~~~~~ 384 (395)
+.|++.|++
T Consensus 61 v~CC~~K~K 69 (98)
T PF07204_consen 61 VCCCRAKHK 69 (98)
T ss_pred HHHhhhhhh
Confidence 345655555
No 82
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.73 E-value=50 Score=31.51 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=6.5
Q ss_pred HHHhhhccccc
Q psy16945 375 SLVFYVHKQWR 385 (395)
Q Consensus 375 ~~~~~~~~~~~ 385 (395)
.++..|||+.+
T Consensus 291 aYli~Rrr~~~ 301 (306)
T PF01299_consen 291 AYLIGRRRSRA 301 (306)
T ss_pred hheeEeccccc
Confidence 35566666654
No 83
>KOG4818|consensus
Probab=29.66 E-value=56 Score=31.63 Aligned_cols=12 Identities=42% Similarity=0.532 Sum_probs=8.3
Q ss_pred ccccCCCCCCcccC
Q psy16945 382 KQWRHPSSHMYQRI 395 (395)
Q Consensus 382 ~~~~~~~~~~~~~~ 395 (395)
+++|++++ ||++
T Consensus 351 grr~~~~g--Yq~i 362 (362)
T KOG4818|consen 351 GRRRSHSG--YQTI 362 (362)
T ss_pred eheecccc--cccC
Confidence 36666677 9875
No 84
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.65 E-value=1e+02 Score=22.31 Aligned_cols=20 Identities=20% Similarity=-0.087 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy16945 357 FATIVLLTMGVLLTLLLVSL 376 (395)
Q Consensus 357 ~~~i~~~~~~~~~~~~~~~~ 376 (395)
+.|++-.|++.++..+.-++
T Consensus 35 aIGvi~gi~~~~lt~ltN~Y 54 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLY 54 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhh
Confidence 44555555555555555543
No 85
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.28 E-value=21 Score=31.41 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy16945 361 VLLTMGVLLTLLL 373 (395)
Q Consensus 361 ~~~~~~~~~~~~~ 373 (395)
+.+++++++++++
T Consensus 164 lPvvv~~~~~~~~ 176 (189)
T PF14610_consen 164 LPVVVVVLALIMY 176 (189)
T ss_pred ccHHHHHHHHHHH
Confidence 3333333333333
No 86
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=26.12 E-value=70 Score=20.96 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q psy16945 361 VLLTMGVLLTLLLV 374 (395)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (395)
+++|+.+++|+++.
T Consensus 37 lilicllli~iiv~ 50 (52)
T PF04272_consen 37 LILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 87
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.27 E-value=30 Score=27.22 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy16945 361 VLLTMGVLLTLLL 373 (395)
Q Consensus 361 ~~~~~~~~~~~~~ 373 (395)
++++++.++|+++
T Consensus 64 ili~lls~v~IlV 76 (101)
T PF06024_consen 64 ILISLLSFVCILV 76 (101)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 88
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=23.10 E-value=92 Score=20.40 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q psy16945 361 VLLTMGVLLTLLLV 374 (395)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (395)
+++|+.+++|+++.
T Consensus 37 lilicllli~iivm 50 (52)
T TIGR01294 37 LILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 89
>PHA03286 envelope glycoprotein E; Provisional
Probab=22.86 E-value=88 Score=31.34 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.3
Q ss_pred CCCChHHHHHHhhhcc
Q psy16945 314 FDCPLDDFVSLTQDVV 329 (395)
Q Consensus 314 ~~Cpl~~F~~~~~~~~ 329 (395)
-.-+.+.|++.+.+.-
T Consensus 339 lvST~~~fvNVi~e~~ 354 (492)
T PHA03286 339 YLSTLETILNVFEDVH 354 (492)
T ss_pred EEehHHHhhhhhhhcc
Confidence 4567899999888764
No 90
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.52 E-value=32 Score=29.13 Aligned_cols=7 Identities=14% Similarity=0.093 Sum_probs=2.8
Q ss_pred Hhhhccc
Q psy16945 377 VFYVHKQ 383 (395)
Q Consensus 377 ~~~~~~~ 383 (395)
+|+|+||
T Consensus 73 ~c~r~kk 79 (154)
T PF04478_consen 73 FCIRRKK 79 (154)
T ss_pred EEEeccc
Confidence 3344443
No 91
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.43 E-value=74 Score=30.31 Aligned_cols=24 Identities=8% Similarity=0.384 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q psy16945 359 TIVLLTMGVLLTLLLVSLVFYVHK 382 (395)
Q Consensus 359 ~i~~~~~~~~~~~~~~~~~~~~~~ 382 (395)
++++.|++++|+++++.+|+.+||
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555544444
No 92
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=22.09 E-value=89 Score=32.57 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q psy16945 359 TIVLLTMGVLLTLLLVSLVFYVHKQW 384 (395)
Q Consensus 359 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 384 (395)
.++.+++..++++++|++++++|||+
T Consensus 525 ~~~~i~~pp~~~l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 525 QLINIGLPILLLLLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444455566777777666654
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=21.88 E-value=49 Score=25.75 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.3
Q ss_pred HHhhhc
Q psy16945 376 LVFYVH 381 (395)
Q Consensus 376 ~~~~~~ 381 (395)
|+|++|
T Consensus 88 w~f~~r 93 (96)
T PTZ00382 88 WWFVCR 93 (96)
T ss_pred heeEEe
Confidence 333333
No 94
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.04 E-value=32 Score=34.69 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=4.6
Q ss_pred ceEEEEeechHhHHH
Q psy16945 246 KKIWIYSAHDTTVAN 260 (395)
Q Consensus 246 ~k~~~ys~HD~ti~~ 260 (395)
++..+|+.+|+.-+.
T Consensus 154 ~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 154 YHSHVFSPGDTFHLS 168 (439)
T ss_dssp -SEEE--TT--EE--
T ss_pred cceEEecCCCcEEEe
Confidence 555666666665443
No 95
>PRK00523 hypothetical protein; Provisional
Probab=20.76 E-value=1.5e+02 Score=21.80 Aligned_cols=17 Identities=12% Similarity=-0.084 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16945 361 VLLTMGVLLTLLLVSLV 377 (395)
Q Consensus 361 ~~~~~~~~~~~~~~~~~ 377 (395)
+++|+++++.++.+|++
T Consensus 9 ~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444455544
No 96
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=20.41 E-value=73 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHhhhcccccCCCCC
Q psy16945 371 LLLVSLVFYVHKQWRHPSSH 390 (395)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~ 390 (395)
+.++|=.||-+...++++||
T Consensus 117 TtlvlK~C~~~s~~~r~~s~ 136 (205)
T PF15298_consen 117 TTLVLKNCCAQSQNRRRNSH 136 (205)
T ss_pred hhhhhhhhhhhhcccCCCcc
Confidence 33444458877777777764
No 97
>PHA03164 hypothetical protein; Provisional
Probab=20.23 E-value=1.2e+02 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy16945 362 LLTMGVLLTLLLVSLVFYVHK 382 (395)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~ 382 (395)
-++|..+||+++.+++|-.+|
T Consensus 65 gLaIamILfiifvlyvFnVnr 85 (88)
T PHA03164 65 GLAIAMILFIIFVLYVFNVNR 85 (88)
T ss_pred HHHHHHHHHHHHHHHheeecc
Confidence 344555556666555654444
No 98
>KOG0234|consensus
Probab=20.02 E-value=1.3e+02 Score=30.21 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=34.2
Q ss_pred CcCcccHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEEEecCchhHHHHHH
Q psy16945 35 GPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAE 86 (395)
Q Consensus 35 ~~G~LT~~G~~q~~~LG~~lR~rY~~~l~~~y~~~~i~vrST~~~RTi~SA~ 86 (395)
|.-+|++.|.+=...|-+++-++ ...+..|.|+...||+++|+
T Consensus 260 gds~ls~~g~~ya~~l~~f~~~~---------~~~dl~vwts~~~rti~ta~ 302 (438)
T KOG0234|consen 260 GDSPLSERGSQYAKSLIKFVEEQ---------SSSDLDVWTSQRKRTIQTAE 302 (438)
T ss_pred CcccccHHHHHHHHHHHHHHhhh---------cccCceeccchHHHHhhhHh
Confidence 56689999988777776666655 23458999999999999998
Done!