RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16945
(395 letters)
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 330 bits (846), Expect = e-111
Identities = 128/339 (37%), Positives = 194/339 (57%), Gaps = 9/339 (2%)
Query: 9 LYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSK 68
++RHGDR+PI+ +P DP K S WP G GQLT +G QHY+LG++ +RYR + +SY
Sbjct: 9 VFRHGDRSPIDTFPTDPIKE-SSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKH 67
Query: 69 ENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPIPVHTMPEKLDKVLSMK-K 127
E VY+ STDVDRTLMSA NLA FPP+G +W+P + WQPIPVHT+P D++L + +
Sbjct: 68 EQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFR 127
Query: 128 PCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVETITDL-EFIHNTLFIEEIN 186
CP++ + + + S E Q+ L Y+ + + +G + + + +++ L+ E ++
Sbjct: 128 NCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVH 187
Query: 187 NLTLPEWTHPIYPEPLRTVAAFSFA---IPARTPALKRLKAGPLVEDIVKHMVAKSKDKL 243
N TLP W LR ++ S + RL+ G LV +I+ HM ++
Sbjct: 188 NFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIP- 246
Query: 244 KKKKIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNSTSVP 303
KK+ +YSAHDTTV+ L L++++ PPY + + EL+ + EY+V + Y+N T
Sbjct: 247 SYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHE 306
Query: 304 PYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVACHAH 342
PY L +PGC CPL+ F L V+ D W C
Sbjct: 307 PYPLMLPGCSPSCPLERFAELVGPVIPQD--WSTECMTT 343
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 304 bits (780), Expect = e-102
Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 22/343 (6%)
Query: 9 LYRHGDRTPINFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIG---DS 65
+ RHGDR P N Y W +LT +G Q Y LG +RY D G +
Sbjct: 14 ITRHGDRAPFANIENANY----SWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEH 69
Query: 66 YSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVW-----DPKIKWQPIPVHTMPEKLD 120
Y +++YV+S+ +RT++SA++ L G +P + K ++QPIP+ T+
Sbjct: 70 YVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIMTLSADSR 129
Query: 121 KVLSMKKPCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVETITDLEFIHNTL 180
L V K+ NSPE Q + P F Q G + + D+ + + L
Sbjct: 130 --LIQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGLNDVITVGDVL 187
Query: 181 FIEEINNLTLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAKSK 240
+ + + LP+ + + + + A ++ + + G L +++ +
Sbjct: 188 IVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNRMIEDLNNAVN 247
Query: 241 DKLKKKKIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQKDDEYYVNILYKNST 300
K K K+ YS H T+ ++ TL + P Y + + +EL++ D Y V + Y
Sbjct: 248 GK-SKYKMTYYSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYKDGDIYTVKLRYNGK- 305
Query: 301 SVPPYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVACHAHH 343
+L I + C LD Q + ++ H HH
Sbjct: 306 ---YVKLPIMDKNNSCSLDALNKYMQSINEK---FQKHHHHHH 342
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 210 bits (536), Expect = 9e-65
Identities = 65/390 (16%), Positives = 127/390 (32%), Gaps = 63/390 (16%)
Query: 9 LYRHGDRTPINFYPNDPYKNASY----WPVGPGQLTNVGKLQHYKLGQWFGERYRD---- 60
+ R R P+ + ++ W V GQLT G + +G + E
Sbjct: 13 MSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMV 72
Query: 61 LIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIK------WQPIPVHT 114
G+ + ++VY + + RT+ +A+ + G FP V + + P+
Sbjct: 73 KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPVITDN 132
Query: 115 MPEKLDKVLS-------MKKPCPQYDV--EKRKYMNSPEIQQ----VLAKYRPLFQYVSQ 161
PE +K L + Y + + Y +SP ++ LA + F +
Sbjct: 133 SPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSCKEKKVCSLADAKDTFSADYE 192
Query: 162 HAGEPVETITDLEFIHNTLFIEEINNLTLPE--WTHPIYPEPLRTVAA---FSFAIPART 216
+ + + ++ + W + R ++ +
Sbjct: 193 KEPGVSGPLKVGNSLVDAFTLQYYEGFPADQVAWGEIKTDQQWRVLSKLKNGYQDSLFTS 252
Query: 217 PALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIFDLHCP--- 273
+ + A PLV+ I K +V + K KI + HD+ +A+LL L+
Sbjct: 253 TEVAQNVAKPLVKYIDKTLVTEQA---KAPKITLLVGHDSNIASLLTALDFKPYQLHDQQ 309
Query: 274 ---PYTAAVMIELHQKDD--EYYVNILYKNSTSVP--------------PYQLSIPGCDF 314
P ++ + + + + I Y +S L + GC
Sbjct: 310 ERTPIGGKIVFQRWHDKNANQELMKIEYVYQSSEQLRNASVLSLQSPAQRVTLELKGCPV 369
Query: 315 D----CPLDDFVSLTQDVVLTDTQWEVACH 340
D CP+D F ++ + H
Sbjct: 370 DANGFCPVDKFNAVMNNAA--KRSGHHHHH 397
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 210 bits (535), Expect = 3e-64
Identities = 61/386 (15%), Positives = 125/386 (32%), Gaps = 60/386 (15%)
Query: 9 LYRHGDRTPINFYP----NDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRD---L 61
L RHG R P + + W G+LT G G+ G+ YR L
Sbjct: 22 LSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLL 81
Query: 62 IGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQPI--PVHTMPEKL 119
+ E++YV ++ + RT +A+A + G FP G + P+ +
Sbjct: 82 QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQT 141
Query: 120 DKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAK------------YRPLFQYVSQHAGEPV 167
D + + ++ Q+L + P S+ +
Sbjct: 142 DPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTTI 201
Query: 168 ETITDLEFIHNTLFIEEINNLTLPE--WTHPIYPEPLRTVAA---FSFAIPARTPALKRL 222
++ + + TL + NL L + W + + ++ + +
Sbjct: 202 SGLSVMANMVETLRLGWSENLPLSQLAWGKIAQASQITALLPLLTENYDLSNDVLYTAQK 261
Query: 223 KAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIFDLHCPPYT------ 276
+ L+ ++ + ++ + + AHDT +A + +N F P Y+
Sbjct: 262 RGSVLLNAMLDGVKPEAS---PNVRWLLLVAHDTNIAMVRTLMN-FSWQLPGYSRGNIPP 317
Query: 277 -AAVMIELHQ--KDDEYYVNILYKNSTS------------VPPYQ--LSIPGCDFD---- 315
+++++E + K E Y+ + ++ P + PGC
Sbjct: 318 GSSLVLERWRDAKSGERYLRVYFQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGT 377
Query: 316 -CPLDDFVSLTQDVVLTDTQWEVACH 340
CP ++ + D A
Sbjct: 378 LCPFQAAITALGQRI--DRPSAPAVA 401
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 204 bits (520), Expect = 3e-62
Identities = 66/397 (16%), Positives = 113/397 (28%), Gaps = 72/397 (18%)
Query: 9 LYRHGDRTPIN----FYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRD---- 60
+ R G R P P WPV G LT G LG + +R
Sbjct: 14 VSRAGVRAPTKATQLMQDVTPDAW-PTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLL 72
Query: 61 LIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQV------WDPKIKWQPIPVHT 114
V +++ +RT + EA AG P V P + P+
Sbjct: 73 AKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQTDTSSPDPLFNPLKTGV 132
Query: 115 MPEKLDKVLS-------------MKKPCPQYDVEKR--KYMNSPEIQQV--------LAK 151
V + +R + S + L +
Sbjct: 133 CQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQ 192
Query: 152 YRPLFQYVSQHAGEPVETITDLEFIHNTLFIEEINNLTLPEWTHPIYPEPLRTVAA---F 208
P VS ++ + +++ + P W T+ +
Sbjct: 193 ALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNA 252
Query: 209 SFAIPARTPALKRLKAGPLVEDIVKHMVAKSKDK-----LKKKKIWIYSAHDTTVANLLN 263
F + RTP + R +A PL++ I + K + + HDT +ANL
Sbjct: 253 QFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG 312
Query: 264 TLNI------FDLHCPPYTAAVMIELHQK-DDEYYVNILY------------KNSTSVPP 304
L + + PP V + D+ ++ + S + PP
Sbjct: 313 ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPP 372
Query: 305 --YQLSIPGC-----DFDCPLDDFVSLTQDVVLTDTQ 334
+L++ GC C L F + + +
Sbjct: 373 GEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACS 409
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 156 bits (396), Expect = 1e-43
Identities = 58/417 (13%), Positives = 114/417 (27%), Gaps = 89/417 (21%)
Query: 9 LYRHGDRTPINF------------------------YPNDPYKN--------ASYWPVGP 36
RHG+R P + ND Y+
Sbjct: 67 FSRHGERYPSTGSGKKYKAVYEKLMSYNGTFKGELAFLNDDYEYFVPDSVYLEKETSPKN 126
Query: 37 GQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPK 96
G K G F +Y +L + + + V +++ R +++ GF
Sbjct: 127 SDSIYAGTTDAMKHGIAFRTKYGELFDTNDT---LPVFTSNSGRVYQTSQYFARGFMGDD 183
Query: 97 GDQVWDPKIKWQPIPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAKYRPLF 156
+ +K I + L+ + C Y+ + + L
Sbjct: 184 F---SNDTVKTNIISED--ADMGANSLTPRDGCFNYNENANTAIVDEYTTEYL---TKAL 235
Query: 157 QYVSQHAGEPVETITDLEFIHNTLFIEEI--------NNLTLPEWTHPIYPEPLRTVAAF 208
T D+ + E + T E+ Y L +
Sbjct: 236 NRFKASNPGLNITEDDVSNLFGYCAYELNVKGASPMCDIFTNEEFIQYSYSVDLDDYYSN 295
Query: 209 SFAIPARTPALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIF 268
S + R+ L+ ++ + + KIW+ HDT + + + I
Sbjct: 296 SAGNN-----MTRVIGSTLLNASLELLNHDKNE----NKIWLSFTHDTDIEIFHSAIGIL 346
Query: 269 DLHCP------------------PYTAAVMIELHQKDDEYYVNILYKNSTSVPPYQLSIP 310
P A +IE + +E YV + ++ + I
Sbjct: 347 IPDEDLPVDYTPFPSPYSHVGITPQGARTIIEKYACGNESYVRYVINDAV------IPIK 400
Query: 311 GCDFD----CPLDDFVSLTQDVVLTDTQWEVACHAHHFLDLIPTSDEDNSFATIVLL 363
C C L+D+ + + T + C ++ + D + + T L+
Sbjct: 401 KCSSGPGFSCNLNDYNDYVAE-RVAGTNYVEQCGNNNASAVTFYWDYETTNYTASLI 456
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 155 bits (393), Expect = 3e-43
Identities = 63/403 (15%), Positives = 118/403 (29%), Gaps = 84/403 (20%)
Query: 9 LYRHGDRTPI-----------------NFYPNDPYK--NASYWPVGPGQLTNVGKLQHYK 49
L RHG R P + Y + +G LT G+ +
Sbjct: 56 LSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPFGEQELVN 115
Query: 50 LGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQP 109
G F +RY L ++ S+ R + S + + GF K + P
Sbjct: 116 SGIKFYQRYESL----TRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKDPRAQPGQSSP 171
Query: 110 IPVHTMPEKLDKVLSM-KKPCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVE 168
+ E ++ C ++ + + Q +
Sbjct: 172 KIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTATFVP--SIRQRLENDLSGVTL 229
Query: 169 TITDLEFIHN-----TLFIEEINNLTLP--------EWTHPIYPEPLRTVAAFSF----- 210
T T++ ++ + T+ ++ P EW + Y + L+
Sbjct: 230 TDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLFTHDEWINYDYLQSLKKYYGHGAGNPLG 289
Query: 211 ---AIPARTPALKRLKAGPLVEDIVKHMVAKSKDK--LKKKKIWIYSAHDTTVANLLNTL 265
+ + RL P+ +D + S ++ +HD + ++L L
Sbjct: 290 PTQGVGYANELIARLTHSPVHDDTSSNHTLDSSPATFPLNSTLYADFSHDNGIISILFAL 349
Query: 266 NIFDLHCP---------------------PYTAAVMIELHQ--KDDEYYVNILYKNSTSV 302
+++ P P+ + + +E+ Q + E V +L N V
Sbjct: 350 GLYNGTKPLSTTTVENITQTDGFSSAWTVPFASRLYVEMMQCQAEQEPLVRVLV-NDRVV 408
Query: 303 PPYQLSIPGCDFD----CPLDDFVSLTQDVVLTDTQWEVACHA 341
P + GC D C D FV + W C A
Sbjct: 409 P-----LHGCPVDALGRCTRDSFVRGLSF-ARSGGDWA-ECFA 444
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 151 bits (383), Expect = 6e-42
Identities = 63/407 (15%), Positives = 114/407 (28%), Gaps = 93/407 (22%)
Query: 9 LYRHGDRTPI-------------------NFYPNDPYKNASYWPVGPGQLTNVGKLQHYK 49
L RHG R P +F + + +G LT G+ Q
Sbjct: 55 LSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVN 114
Query: 50 LGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQVWDPKIKWQP 109
G F +RY+ L ++ ++ DR + S E + GF K
Sbjct: 115 SGIKFYQRYKAL----ARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPA 170
Query: 110 IPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVSQHAGEPVET 169
I V + C +++ + + + A + +H T
Sbjct: 171 ISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFAP--DIRARAEKHLPGVTLT 228
Query: 170 ITDLEFIHNTLFIEEI-------------NNLTLPEWTHPIYPEPLRTVAAFSFAIPART 216
D+ + + + + T EW Y + L + P
Sbjct: 229 DEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGYGAGNP--- 285
Query: 217 PALKRLKAGPLVEDIVKHM---------------VAKSKDKLKKKKIWIYSAHDTTVANL 261
L + +++ + V+ +++ +HD ++ ++
Sbjct: 286 --LGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSI 343
Query: 262 LNTLNIFDLHCP---------------------PYTAAVMIELHQ--KDDEYYVNILYKN 298
L +++ P P+ A E Q + E V L N
Sbjct: 344 FFALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEKEPLVRALI-N 402
Query: 299 STSVPPYQLSIPGCDFD----CPLDDFVSLTQDVVLTDTQWEVACHA 341
VP + GCD D C L+DFV C +
Sbjct: 403 DRVVP-----LHGCDVDKLGRCKLNDFVKGLSWARSGG--NWGECFS 442
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 127 bits (319), Expect = 9e-33
Identities = 57/397 (14%), Positives = 101/397 (25%), Gaps = 96/397 (24%)
Query: 9 LYRHGDRTPINFYPND----------------------------PYKNASYWPVGPGQLT 40
+ RHG+R P D N Y+
Sbjct: 60 VKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYNAETTSGP 119
Query: 41 NVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQV 100
G L Y G + RY L V S+ R + +A GFF
Sbjct: 120 YAGLLDAYNHGNDYKARYGHLWNGE---TVVPFFSSGYGRVIETARKFGEGFFGYNY--- 173
Query: 101 WDPKIKWQPIPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAKYRPLFQYVS 160
++ + E +V+ P D + + + L +++ ++
Sbjct: 174 ------STNAALNIISE--SEVMGADSLTPTCDTDNDQT-TCDNLTYQLPQFKVAAARLN 224
Query: 161 QHAGEPVETITDLEFIHNTLFIEEINN--------LTLPEWTHPIYPEPLRTVAAFSFAI 212
T +D+ + E T EW Y E L
Sbjct: 225 SQNPGMNLTASDVYNLMVMASFELNARPFSNWINAFTQDEWVSFGYVEDLNYYYCAGPGD 284
Query: 213 PARTPALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIFDLHC 272
+ + K+ ++ AHDT + +L L + +
Sbjct: 285 K-----NMAAVGAVYANASLTLLNQGPKE---AGSLFFNFAHDTNITPILAALGVLIPNE 336
Query: 273 P------------------PYTAAVMIELHQ------KDDEYYVNILYKNSTSVPPYQLS 308
P + IE D+ YV ++ N +P
Sbjct: 337 DLPLDRVAFGNPYSIGNIVPMGGHLTIERLSCQATALSDEGTYVRLVL-NEAVLP----- 390
Query: 309 IPGC----DFDCPLDDFVSLTQDVVLTDTQWEVACHA 341
C + CPL ++ S+ + + C+
Sbjct: 391 FNDCTSGPGYSCPLANYTSILNKNL---PDYTTTCNV 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 9e-09
Identities = 65/407 (15%), Positives = 113/407 (27%), Gaps = 170/407 (41%)
Query: 51 GQ-----WFGE------RYRDLIGDSYSKENVYVMSTDVDRTLMSAEANLAGFFPPKGDQ 99
GQ +F E Y L+GD + S + L+ + F +G
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGD------LIKFSAETLSELIRTTLDAEKVFT-QGLN 214
Query: 100 VWDPKIKW------QP-------IPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPE-- 144
+ ++W P IP+ + P L V+ + Y V + +P
Sbjct: 215 I----LEWLENPSNTPDKDYLLSIPI-SCP--LIGVIQLA----HYVVTAKLLGFTPGEL 263
Query: 145 ----------IQQVLA-------------------KYRPLFQ--YVSQHA---------- 163
Q ++ LF A
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 164 -------GEPVET----ITDLEFIHNTLFIEEINNLTLPEWTHPIY-------------- 198
E V + I++L ++ + N+ LP +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQ-VEISLVNGAKNLVVSG 381
Query: 199 -PEPLRTVAAFSFAIPARTPALKRLKAGPLVEDIVKHMVAKSKDKLKKKKIWIYSAHDTT 257
P+ L + L++ KA ++ +S+ ++K+ +
Sbjct: 382 PPQSLYGLNL----------TLRKAKAPSGLD--------QSRIPFSERKLKFSN----- 418
Query: 258 VANLLNTLNI---FDLHCPPYTAAVMIELHQKDDEYYVNILYKNSTSVPPYQLSIP---- 310
L + F H A +L KD L KN+ S + IP
Sbjct: 419 -----RFLPVASPF--HSHLLVPAS--DLINKD-------LVKNNVSFNAKDIQIPVYDT 462
Query: 311 --GCDFDCPLDDFVSLTQ---DVVLTDT-QWEVACH--AHHFLDLIP 349
G D L S+++ D ++ +WE A H LD P
Sbjct: 463 FDGSDL-RVLSG--SISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 48.9 bits (116), Expect = 2e-06
Identities = 66/352 (18%), Positives = 98/352 (27%), Gaps = 156/352 (44%)
Query: 153 RPLFQYVSQHAGEPVE-TI---TDLEFIHNTL---FIEEINNLTLPEWTH-------PIY 198
RPL H G +E + T FI + L F + LPE T P
Sbjct: 7 RPL---TLSH-GS-LEHVLLVPTASFFIASQLQEQFNK-----ILPEPTEGFAADDEPTT 56
Query: 199 PEPLRTVAAF-SF--------AIPARTPALKRLKAGPLVE---------DIVKHMVAKS- 239
P L V F + + L L E DI H +A
Sbjct: 57 PAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLC----LTEFENCYLEGNDI--HALAAKL 108
Query: 240 ----KDKLKKKKIWI---YSAHDTTVAN----------LLNTLN--------IF------ 268
L K K I +A +A L + IF
Sbjct: 109 LQENDTTLVKTKELIKNYITAR--IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 269 --------DLHC--PPY-------TAAVMIEL---HQKDDEYY---VNILY--KNSTSVP 303
DL+ +A + EL ++ + +NIL +N ++ P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 304 P--YQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVACHAH----------------HFL 345
Y LSIP CPL + + Q + V H
Sbjct: 227 DKDYLLSIP---ISCPL---IGVIQLA-----HYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 346 DLIP-----TSDEDNSFATIVLLTMGVLLTLLLVSLVFYV----HKQWRHPS 388
L+ +D SF V + VL F++ ++ + + S
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVL---------FFIGVRCYEAYPNTS 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 5e-08
Identities = 46/303 (15%), Positives = 79/303 (26%), Gaps = 93/303 (30%)
Query: 98 DQVWDPKIKWQP------IPVHTMPEKLDKVLSMKKPCPQYDVEKRKYMNSPEIQQVLAK 151
V + K W I + T +++ LS + E++ +L K
Sbjct: 251 LNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 152 YRPLFQYVSQHAGE-PVETITDLEFIHNTLFIEEI--NNLTLPEWTHPIYPEPLRTVAAF 208
Y+ + P E +T + + E I T W H + + +
Sbjct: 310 ------YLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 209 --------------SFA-------IPARTPALKRLKAGPL---VEDIVKHMVAKS---KD 241
+ IP L + + V +V + S K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 242 KLKKKKIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVMIELHQK-DDEYYVNILYKNST 300
K+ I I S + +L LH+ D Y + + +
Sbjct: 421 P-KESTISIPSIY-------------LELKVK---LENEYALHRSIVDHYNIPKTFDSDD 463
Query: 301 SVPPYQLSIPGCDFDCPLDDFVSLTQDVVLTDTQWEVACH-AHHFLDLIPTSDEDNSFAT 359
+PP LD + H HH L I + F
Sbjct: 464 LIPP------------YLDQY---------------FYSHIGHH-LKNIEHPERMTLFRM 495
Query: 360 IVL 362
+ L
Sbjct: 496 VFL 498
Score = 47.9 bits (113), Expect = 4e-06
Identities = 51/311 (16%), Positives = 92/311 (29%), Gaps = 108/311 (34%)
Query: 34 VGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVMSTDVDRTLMSAEA-----N 88
P +L+ + + L W + ++ + D + ++ + ++ L AE
Sbjct: 325 TNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTT----IIESSLN-VLEPAEYRKMFDR 377
Query: 89 LAGFFPPKGDQVWDP----KIKWQPIP---VHTMPEKL-DKVLSMKKPCPQ-------YD 133
L+ FP P + W + V + KL L K+P Y
Sbjct: 378 LS-VFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 134 VEKRKYMNSPEI-QQVLAKYR-------------PLFQYVSQHAG------EPVETIT-- 171
K K N + + ++ Y L QY H G E E +T
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 172 -----DLEFIHNTLFIEEINNLTLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAGP 226
D F+ + R + +G
Sbjct: 494 RMVFLDFRFLEQKI----------------------------------RHDSTAWNASGS 519
Query: 227 LVEDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNTLNIF------DLHCPPYTAAVM 280
++ + + LK K +I +D L+N + F +L C YT +
Sbjct: 520 ILNTLQQ---------LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 281 IELHQKDDEYY 291
I L +D+ +
Sbjct: 570 IALMAEDEAIF 580
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family,
phophorylation, transferase; 2.30A {Salmonella
typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Length = 288
Score = 32.1 bits (74), Expect = 0.30
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 218 ALKRLKAGPLVEDIVKHMVAKSKDKL 243
L+R +V D V M+AKS D L
Sbjct: 115 RLQRHHVRNVVLDTV--MLAKSGDPL 138
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis,
ribokinase family, phosphorylati structural genomics;
2.05A {Thermus thermophilus} SCOP: c.72.1.2
Length = 258
Score = 31.7 bits (73), Expect = 0.37
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 218 ALKRLKAGPLVEDIVKHMVAKSKDKL 243
A++R PLV D V MVAKS D L
Sbjct: 91 AVRRFGVRPLVVDPV--MVAKSGDPL 114
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase
superfamily, transferase; HET: ADP; 2.80A {Bacillus
subtilis}
Length = 271
Score = 31.3 bits (72), Expect = 0.50
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 218 ALKRLKAGPLVEDIVKHMVAKSKDKL 243
+K + +V D V MV K +++
Sbjct: 95 TIKEKQLKNVVIDPV--MVCKGANEV 118
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 28.6 bits (63), Expect = 3.4
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 229 EDIVKHMVAKSKDKLKKKKIWIYSAHDTTVANLLNT 264
E ++ +++ L+ + H VAN+L +
Sbjct: 235 ETDPAIVINRARKALEIYQ------HQVVVANILES 264
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural
genomics/proteomics INIT RSGI, structural genomics; HET:
SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Length = 194
Score = 28.3 bits (64), Expect = 3.7
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 241 DKLKKKKIWIYSAHDTTVANLLNTLNIFDLHCPPYTAAVM 280
LK++ +Y+ A D P TA +
Sbjct: 87 RFLKERGFTVYATALREDARDFRE---VDYTKP--TAVLF 121
>3oru_A DUF1989 family protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, metal binding PR; HET: MSE; 1.11A {Ruegeria
SP} PDB: 3siy_A*
Length = 234
Score = 27.5 bits (60), Expect = 6.4
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 189 TLPEWTHPIYPEPLRTVAAFSFAIPARTPALKRLKAG 225
P + A ++ IPAR R+ G
Sbjct: 17 ENPSAHETLAEGGRLRPEA-TYTIPARQGRAIRMAQG 52
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 27.5 bits (61), Expect = 10.0
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 19 NFYPNDPYKNASYWPVGPGQLTNVGKLQHYKLGQWFGERYRDLIGDSYSKENVYVM-STD 77
Y +D K + T+V ++ +++ + + N V
Sbjct: 312 PMYEDDARKELWFDEKIYS--TSVSSSAPKEIKKFWNIDTYGNGTITSNSGNQIVFRYAG 369
Query: 78 VDRTLMSAEA 87
L+ AEA
Sbjct: 370 A--LLLYAEA 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,281,224
Number of extensions: 372833
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 28
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)