Query psy16948
Match_columns 297
No_of_seqs 165 out of 259
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:47:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0e_A Protein MRAZ; cell divi 23.3 23 0.00078 30.0 0.8 42 110-162 47-88 (166)
2 3h3g_B Parathyroid hormone-rel 8.8 60 0.0021 18.9 -0.3 10 1-10 4-13 (24)
3 1ne5_A Ergtoxin, cnerg1, ERGTX 8.0 1.3E+02 0.0044 19.6 0.9 10 74-83 3-12 (42)
4 3j1r_A Archaeal adhesion filam 5.6 4.8E+02 0.017 15.3 2.5 14 8-21 11-24 (26)
5 3h8k_B Autocrine motility fact 5.5 1.2E+02 0.0043 18.2 -0.1 7 2-8 20-26 (28)
6 1yew_A Particulate methane mon 5.4 3E+02 0.01 26.2 2.3 15 7-21 161-175 (382)
7 2prv_A Uncharacterized protein 4.8 2.8E+02 0.0094 22.0 1.5 40 73-113 97-136 (153)
8 2eng_A Endoglucanase V; cellul 4.6 2.7E+02 0.0092 24.4 1.4 26 188-213 100-126 (210)
9 2hly_A AGR_C_4178P, hypothetic 4.6 88 0.003 27.3 -1.7 15 122-136 29-43 (207)
10 3rfr_A PMOB; membrane, oxidore 4.5 3.7E+02 0.013 25.9 2.3 15 7-21 189-203 (419)
No 1
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A 1n0g_A
Probab=23.33 E-value=23 Score=30.01 Aligned_cols=42 Identities=5% Similarity=0.023 Sum_probs=30.1
Q ss_pred HHHHhhcCCccCCCCCCceEEEeeccCCCCCCCCcccccchhhhhhcCCCCCC
Q psy16948 110 VLDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNYVHNVPSKLLKLKHWNN 162 (297)
Q Consensus 110 il~~i~~S~y~T~dP~eACLFv~~id~l~~d~l~~~yv~~~~~~l~~lPyWN~ 162 (297)
|.+.+.+.-+.|.+++ .||++.+.+.+ ..+.++|.++|.+|.
T Consensus 47 fR~~L~~~lvlt~g~~-~CL~~yp~~ew----------e~~~~kl~~l~~~~~ 88 (166)
T 1n0e_A 47 LRAFFEGSIVINRGFE-NCLEVRKPQDF----------QKYFEQFNSFPSTQK 88 (166)
T ss_dssp HHHHCCSEEECCCCTT-SCCEEBCHHHH----------HHHHHHHTTSCSSSH
T ss_pred HHHhhCCcEEEEECCC-CcEEECCHHHH----------HHHHHHHHcCCCCCH
Confidence 4444555567888875 59999998876 335677888888873
No 2
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.82 E-value=60 Score=18.93 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=6.2
Q ss_pred CCcchhHHHH
Q psy16948 1 MQFKKRFLLV 10 (297)
Q Consensus 1 mq~~~r~~~~ 10 (297)
||.-||-+||
T Consensus 4 ~Q~~rRr~wL 13 (24)
T 3h3g_B 4 IQDLRRRFFL 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666655
No 3
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A
Probab=7.97 E-value=1.3e+02 Score=19.55 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=8.9
Q ss_pred cccccccCcC
Q psy16948 74 ETCFDFTKCI 83 (297)
Q Consensus 74 ~tCFD~sRC~ 83 (297)
++|.|-|||.
T Consensus 3 dscvdksrc~ 12 (42)
T 1ne5_A 3 DSCVDKSRCA 12 (42)
T ss_dssp CCGGGTSCCC
T ss_pred cchhcHHHHh
Confidence 6899999997
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=5.63 E-value=4.8e+02 Score=15.29 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q psy16948 8 LLVLLSCAFLAFCY 21 (297)
Q Consensus 8 ~~~~~~~~~l~~~~ 21 (297)
+++++.++-|+|..
T Consensus 11 Iviav~aaVllylW 24 (26)
T 3j1r_A 11 ILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556667776544
No 5
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=5.54 E-value=1.2e+02 Score=18.15 Aligned_cols=7 Identities=71% Similarity=1.046 Sum_probs=5.0
Q ss_pred CcchhHH
Q psy16948 2 QFKKRFL 8 (297)
Q Consensus 2 q~~~r~~ 8 (297)
||+||||
T Consensus 20 ~ARrryl 26 (28)
T 3h8k_B 20 QARKRFL 26 (28)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5678876
No 6
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=5.42 E-value=3e+02 Score=26.21 Aligned_cols=15 Identities=7% Similarity=0.281 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy16948 7 FLLVLLSCAFLAFCY 21 (297)
Q Consensus 7 ~~~~~~~~~~l~~~~ 21 (297)
.+|+++.++||++++
T Consensus 161 ~~W~~~g~aWll~W~ 175 (382)
T 1yew_A 161 AFWFAIGVAWIGYWS 175 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 578999999997655
No 7
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=4.78 E-value=2.8e+02 Score=21.96 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=22.5
Q ss_pred ccccccccCcCCCCCcEEEeCCCCCCCCCCccHHHHHHHHH
Q psy16948 73 METCFDFTKCIGDNFKVYIYPSNPDEEPNTISSLYQKVLDV 113 (297)
Q Consensus 73 m~tCFD~sRC~~~~fkVYVYp~~~~~~~~p~s~~y~~il~~ 113 (297)
..=|+|++.|....=+||+|...... ...+...+..|+..
T Consensus 97 ~~~~ld~~~~~~~~~pv~~wd~~~~~-~~~iA~sF~efL~~ 136 (153)
T 2prv_A 97 FAYCLDTNKMKDGECPVVEWDRVIGY-QDTVADSFIEFFYN 136 (153)
T ss_dssp EEEEEETTSCBTTBCCEEEEETTTEE-EEEEESSHHHHHHH
T ss_pred cEEEEeccccCCCCCCEEEEEccCCc-eEEEcCCHHHHHHH
Confidence 44599999887444588887643200 01344455555543
No 8
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A
Probab=4.64 E-value=2.7e+02 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=15.5
Q ss_pred CCcEEEEeecCC-ccccccCCceeccC
Q psy16948 188 TGQAILAKASMS-VTHFRTGFDVSIPL 213 (297)
Q Consensus 188 ~g~AIla~As~s-~~~fRpgFDVSlPl 213 (297)
.|+-||+|++=+ .+-=-.+|||.||=
T Consensus 100 ~GKkmiVQ~TNtG~Dl~~n~FDl~iPG 126 (210)
T 2eng_A 100 AGKKMVVQSTSTGGDLGSNHFDLNIPG 126 (210)
T ss_dssp TTCEEEEEEEEC-----CCEEEEECTT
T ss_pred CCCEEEEEEecccCCCCCCceeEecCC
Confidence 478888876522 11112688999885
No 9
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=4.60 E-value=88 Score=27.33 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.4
Q ss_pred CCCCCceEEEeeccC
Q psy16948 122 DDPSQACIFILAIDT 136 (297)
Q Consensus 122 ~dP~eACLFv~~id~ 136 (297)
.|++.||+|+-..+.
T Consensus 29 Ad~~~Ac~fFs~~Ga 43 (207)
T 2hly_A 29 ADPASASMYFSTFGA 43 (207)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 899999999975554
No 10
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=4.52 E-value=3.7e+02 Score=25.85 Aligned_cols=15 Identities=13% Similarity=0.467 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy16948 7 FLLVLLSCAFLAFCY 21 (297)
Q Consensus 7 ~~~~~~~~~~l~~~~ 21 (297)
.+|+++.++||++++
T Consensus 189 ~~W~~~g~aWll~W~ 203 (419)
T 3rfr_A 189 LPWLAVGAAWILFWF 203 (419)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 578999999998666
Done!