Query psy16948
Match_columns 297
No_of_seqs 165 out of 259
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 17:47:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2byea1 d.15.1.5 (A:2-110) Pho 20.7 73 0.0053 23.1 5.1 52 81-133 4-60 (109)
2 d1k92a1 c.26.2.1 (A:1-188) Arg 7.7 1.6E+02 0.012 20.5 3.7 39 233-277 7-45 (188)
3 d1px9a_ g.3.7.2 (A:) Ergtoxin 7.6 58 0.0042 19.6 0.7 10 74-83 3-12 (42)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.3 1.6E+02 0.012 15.7 2.1 12 11-22 3-14 (26)
5 d1oi0a_ c.97.3.1 (A:) Hypothet 4.4 1.5E+02 0.011 21.1 1.7 24 106-134 10-33 (121)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.3 2.6E+02 0.019 15.6 2.2 11 8-18 15-25 (34)
7 d2bgca2 b.82.3.3 (A:7-137) Lis 3.8 1.8E+02 0.013 20.9 1.6 14 119-132 23-36 (131)
8 d1ihua1 c.37.1.10 (A:1-296) Ar 3.8 4.8E+02 0.035 19.7 4.5 35 240-277 10-47 (296)
9 d1h80a_ b.80.1.8 (A:) iota-car 3.8 1.6E+02 0.011 25.8 1.3 17 156-172 86-103 (464)
10 d1c6vx_ b.34.7.1 (X:) DNA-bind 3.6 1.8E+02 0.013 18.4 1.2 13 85-98 6-18 (55)
No 1
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.74 E-value=73 Score=23.08 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=29.7
Q ss_pred CcCCCCCcEEEeCCCCC-C----CCCCccHHHHHHHHHhhcCCccCCCCCCceEEEee
Q psy16948 81 KCIGDNFKVYIYPSNPD-E----EPNTISSLYQKVLDVVKESRYYTDDPSQACIFILA 133 (297)
Q Consensus 81 RC~~~~fkVYVYp~~~~-~----~~~p~s~~y~~il~~i~~S~y~T~dP~eACLFv~~ 133 (297)
+|+ ..|||+||..... | .-+.-+....-+.++|.....-..||.+=||.=..
T Consensus 4 ~~~-~t~~V~V~~v~~~~Py~~l~is~~sTA~~Vv~q~L~K~~~~~~dp~~y~L~Eev 60 (109)
T d2byea1 4 KCL-QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEK 60 (109)
T ss_dssp SCC-CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEEC
T ss_pred ccc-eEEEEEEEECCCCCCcEEEEECCCccHHHHHHHHHHHcCCCCCChhHEEEEEEE
Confidence 565 6799999965442 1 00011222233444666666666788887777653
No 2
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.73 E-value=1.6e+02 Score=20.52 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCCCcceEEEeeccceeccCChHHHHhhhcccCCCceEEEeecCC
Q psy16948 233 FPLRKKYILAFKGKRYVYGIGSEVRNSLYHLHNGADMVLVTTCKH 277 (297)
Q Consensus 233 ~P~~RkyLl~f~Gkry~~gi~s~~Rn~L~~l~ng~dvvv~~~C~~ 277 (297)
.|..+|.++.|+| |++|-+--.|.+ +.|.+++.+.-+-+
T Consensus 7 ~~~gkKv~vA~SG-----GvDSsvll~lL~-~~g~~v~~~~~~~~ 45 (188)
T d1k92a1 7 LPVGQRIGIAFSG-----GLDTSAALLWMR-QKGAVPYAYTANLG 45 (188)
T ss_dssp CCTTSEEEEECCS-----SHHHHHHHHHHH-HTTCEEEEEEEECC
T ss_pred CCCCCEEEEEeCC-----CHHHHHHHHHHH-HcCCcCeEEeeecC
Confidence 4667899999999 788877544332 23666776665544
No 3
>d1px9a_ g.3.7.2 (A:) Ergtoxin (HERG specific toxin CnErg1) {Scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=7.61 E-value=58 Score=19.55 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=8.9
Q ss_pred cccccccCcC
Q psy16948 74 ETCFDFTKCI 83 (297)
Q Consensus 74 ~tCFD~sRC~ 83 (297)
++|.|-|||.
T Consensus 3 dscvdksrc~ 12 (42)
T d1px9a_ 3 DSCVDKSRCA 12 (42)
T ss_dssp GGGTTSCCCC
T ss_pred hhhhhhHHhh
Confidence 6899999997
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.32 E-value=1.6e+02 Score=15.74 Aligned_cols=12 Identities=0% Similarity=0.130 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q psy16948 11 LLSCAFLAFCYF 22 (297)
Q Consensus 11 ~~~~~~l~~~~~ 22 (297)
+..+.|+.+.+|
T Consensus 3 aslaiw~fw~ff 14 (26)
T d1rzhh2 3 ASLAIYSFWIFL 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455544443
No 5
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.45 E-value=1.5e+02 Score=21.08 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHHHHHHhhcCCccCCCCCCceEEEeec
Q psy16948 106 LYQKVLDVVKESRYYTDDPSQACIFILAI 134 (297)
Q Consensus 106 ~y~~il~~i~~S~y~T~dP~eACLFv~~i 134 (297)
.+.+|++.-+ ...|+|+|-|+..-
T Consensus 10 ~l~~i~~hA~-----~~~P~E~cGlL~G~ 33 (121)
T d1oi0a_ 10 LLKTILEAAK-----SAHPDEFIALLSGS 33 (121)
T ss_dssp HHHHHHHHHH-----HHTTSCCEEEEEES
T ss_pred HHHHHHHHHH-----hcCCceeEEEEEec
Confidence 3445555443 35799999999853
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.32 E-value=2.6e+02 Score=15.57 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q psy16948 8 LLVLLSCAFLA 18 (297)
Q Consensus 8 ~~~~~~~~~l~ 18 (297)
.||++|.+-|.
T Consensus 15 gwlafslamlf 25 (34)
T d1xmeb2 15 GWLAFSLAMLF 25 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 46777776554
No 7
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=3.81 E-value=1.8e+02 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=12.2
Q ss_pred ccCCCCCCceEEEe
Q psy16948 119 YYTDDPSQACIFIL 132 (297)
Q Consensus 119 y~T~dP~eACLFv~ 132 (297)
|-.-||+|-|+|+.
T Consensus 23 fnqwdp~eycifl~ 36 (131)
T d2bgca2 23 FNQWDPQEYCIFLY 36 (131)
T ss_dssp ECTTCCCCEEEEEE
T ss_pred ecccCcceeEEeee
Confidence 56789999999987
No 8
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=3.77 E-value=4.8e+02 Score=19.72 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=24.2
Q ss_pred EEEeeccceeccCChHHHHhhh--cc-cCCCceEEEeecCC
Q psy16948 240 ILAFKGKRYVYGIGSEVRNSLY--HL-HNGADMVLVTTCKH 277 (297)
Q Consensus 240 Ll~f~Gkry~~gi~s~~Rn~L~--~l-~ng~dvvv~~~C~~ 277 (297)
+++|.|| .|+|..|-.+-. .+ ..|..|++++....
T Consensus 10 ~i~~sGK---GGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~ 47 (296)
T d1ihua1 10 YLFFTGK---GGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (296)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEECC---CcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4467888 799998765533 33 35888988887743
No 9
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}
Probab=3.76 E-value=1.6e+02 Score=25.78 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=15.2
Q ss_pred cCCCCC-CCCCeEEEEcc
Q psy16948 156 KLKHWN-NGKNHIVFNLF 172 (297)
Q Consensus 156 ~lPyWN-~GrNHlifnl~ 172 (297)
-+|.|+ +|.||=||.+.
T Consensus 86 iyPT~~~d~KNhrlF~fg 103 (464)
T d1h80a_ 86 IKPTWNGDGKNHRLFEVG 103 (464)
T ss_dssp EEECCCTTCSCEEEEEES
T ss_pred EeecCCCCcccceeeeec
Confidence 579999 99999999986
No 10
>d1c6vx_ b.34.7.1 (X:) DNA-binding domain of retroviral integrase {Simian immunodeficiency virus [TaxId: 11723]}
Probab=3.56 E-value=1.8e+02 Score=18.42 Aligned_cols=13 Identities=46% Similarity=0.979 Sum_probs=9.2
Q ss_pred CCCcEEEeCCCCCC
Q psy16948 85 DNFKVYIYPSNPDE 98 (297)
Q Consensus 85 ~~fkVYVYp~~~~~ 98 (297)
..|+|| |..+..|
T Consensus 6 ~nFrVY-YR~~~dp 18 (55)
T d1c6vx_ 6 KNFRVY-YREGRDQ 18 (55)
T ss_dssp CCEEEC-CCCSSCS
T ss_pred cceEEE-EEcCCCC
Confidence 468888 7776655
Done!