RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16948
(297 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 7e-09
Identities = 49/275 (17%), Positives = 79/275 (28%), Gaps = 94/275 (34%)
Query: 85 DNF-KVYIYPSN---PDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFI----LAIDT 136
+ F K+ P+ D+EP T + L K L V +PS+ F L +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL----VEPSKVGQFDQVLNLCLTE 90
Query: 137 LDRDPLSSNYVHNV--------PSKLLKLKHW---------------------------N 161
+ L N +H + + L+K K
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 162 NGKNHIVFNLFSG--TWPDYLEE--DLGFDTGQAI--------------LAKASMSVT-H 202
G + +F G DY EE DL + T + L + ++
Sbjct: 151 EGNAQL-VAIFGGQGNTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 203 FRTGFDVSIPLFQKDLPERGGEPG------AVISNNFPL-----RKKYILAFKGKRYVYG 251
F G ++ + L P IS PL Y++ K + G
Sbjct: 209 FTQGLNI-----LEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAK----LLG 257
Query: 252 IG-SEVRNSLYHL--HNGADMVLVTTCKHGKNWAE 283
E+R+ L H +V +W
Sbjct: 258 FTPGELRSYLKGATGH-SQGLVTAVAIAETDSWES 291
Score = 42.0 bits (98), Expect = 2e-04
Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 77/217 (35%)
Query: 98 EEPNTISSLYQKVLDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNYVHNVP-SKLLK 156
++ + L++++ + ++PS D L P+S P +++
Sbjct: 200 RTTLDAEKVFTQGLNILE----WLENPSNT----PDKDYLLSIPIS------CPLIGVIQ 245
Query: 157 LKHW-----NNGKNH-IVFNLFSG------------------TWPDYLEEDLGFDTGQAI 192
L H+ G + + G +W +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV----------- 294
Query: 193 LAKASMSVTHFRTGF-------DVSI-PLFQKDLPERG-GEPG---AVISNNFPLRKKYI 240
+ +++V F G + S+ P +D E G P ++ + + Y+
Sbjct: 295 SVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 241 LAF----KGKRYVYGIGSEVRNSLYHLHNGADMVLVT 273
+ V I L NGA ++V+
Sbjct: 354 NKTNSHLPAGKQVE-IS---------LVNGAKNLVVS 380
Score = 35.4 bits (81), Expect = 0.026
Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 46/163 (28%)
Query: 124 PSQACIFILAIDTLDRDPLSSNYVHNVPSKLLKLKHWN----NGKNHIVFNLFSGTWPDY 179
PS +L+I L ++ + YV+ S L K NG ++V SG P
Sbjct: 335 PS----PMLSISNLTQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNLVV---SGP-PQS 385
Query: 180 LEEDLGFDTGQAILAKASMSVTHFRTGFDVS-IPLFQKDLPERGGEPGAVISNNF----- 233
L G + L KA +G D S IP ++ L SN F
Sbjct: 386 LY---GLNL---TLRKAKAP-----SGLDQSRIPFSERKL---------KFSNRFLPVAS 425
Query: 234 P-----LR--KKYILAFKGKRYVYGIGSEVRNSLYHLHNGADM 269
P L I K V +++ +Y +G+D+
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 49/312 (15%), Positives = 90/312 (28%), Gaps = 106/312 (33%)
Query: 25 YRLKHKQTKVLDEFSEDWIDLNHEKD-----IESSPYLRRLGGDVLPNNQKCRMETCFDF 79
Y++ T D S + ++ + ++S PY L VL N Q + F+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNL 264
Query: 80 TKC-------------IGDNFKVYIYPSNPDEEPNTIS---SLYQKVLDVVKESRYYTDD 123
C + T SL K LD + D
Sbjct: 265 -SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DL 318
Query: 124 PSQAC------IFILA----------------------------IDTLDRDPLSSNYVH- 148
P + + I+A ++ L+ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 149 -------NVPSKLLKLKHWNNGKNHIVFNLFSGTWPDYLEEDLGFDTGQAILAKASMSVT 201
++P+ LL L W D ++ D+ + L K S+
Sbjct: 379 SVFPPSAHIPTILLSL-----------------IWFDVIKSDVMVVVNK--LHKYSLVEK 419
Query: 202 HFRTGFDVSIPLFQKDLPERGGEPGAV---ISNNFPLRKKY----ILAFKGKRYVYG-IG 253
+ +SIP +L + A+ I +++ + K + ++ +Y Y IG
Sbjct: 420 QPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 254 SEVRNSLYHLHN 265
+HL N
Sbjct: 479 -------HHLKN 483
Score = 36.0 bits (82), Expect = 0.015
Identities = 47/321 (14%), Positives = 82/321 (25%), Gaps = 109/321 (33%)
Query: 27 LKHKQTKVLDEFSEDWIDLN--------HEKDIESSP-------YLRRLGGD--VLPNNQ 69
L KQ +++ +F E+ + +N + + S RL D V
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 70 KCR------------------------M----------ETCFDFTKCIGDNFKVY-IYPS 94
R + + C + +FK++ +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 95 NPDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNYVHNVPSKL 154
N + + L + Y DP+ + D L + + +L
Sbjct: 191 NCNSPETVLEML---------QKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 155 LKLKHWNNG---------KNHI-VFN-----LFSGTWPDYLEEDLGFDTGQAILAKASMS 199
LK K + N FN L + T + + L T I S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHI------S 290
Query: 200 VTHFRTGF--DVSIPLFQK-------DLPER--GGEP------GAVISNNFPLRKKYILA 242
+ H D L K DLP P I +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKH 349
Query: 243 FKGKRYVYGIGSEVRNSLYHL 263
+ + + + +SL L
Sbjct: 350 VNCDK----LTTIIESSLNVL 366
Score = 30.2 bits (67), Expect = 1.1
Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 103/305 (33%)
Query: 27 LKHKQTKVLDEFSEDWI-DLNHEKDIESSPY--------------------LRRLGGDVL 65
+++ +L F + ++ + + KD++ P RL L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTL 71
Query: 66 PNNQKCRMETCFDFTK-CIGDNFKVYIYPS--NPDEEPNTISSLYQKVLDVVKESRYYTD 122
+ Q+ E F + + N+K ++ +P+ ++ +Y + D R Y D
Sbjct: 72 LSKQE---EMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD-----RLYND 122
Query: 123 DPSQACIFILAIDTLDRDPLSSNYVHNVPSKLLKLKHWNNGKNHIVFNLFSGTWPDYLEE 182
+ + A + R + LL+L+ KN ++ G
Sbjct: 123 NQ------VFAKYNVSRLQP----YLKLRQALLELRP---AKNVLID----G-------- 157
Query: 183 DLGFDTGQAILAKAS----------------MSVTHFRTGFDVSIPL------FQKDLPE 220
LG G+ +A +++ + + V L +
Sbjct: 158 VLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 221 RGGEPGAVISNNFPLRKKYILAFKGKRYVYGIGSEVRNSLYHLHNGADM----------- 269
R + ++ + K K Y N L L N +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPY--------ENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 270 VLVTT 274
+L+TT
Sbjct: 268 ILLTT 272
Score = 29.8 bits (66), Expect = 1.3
Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 56/165 (33%)
Query: 25 YRLKHKQTKVLDEFSEDWIDLNHEKDIESSPYLRRLGGDVLPNNQKCRMETCFDFTKCIG 84
+ ++ + + L H ++ Y + FD I
Sbjct: 426 ISIPSIYLELKVKLENE-YAL-HRSIVDH--Y---------------NIPKTFDSDDLIP 466
Query: 85 DNFKVYIY--------PSNPDEEPNTISSLY-------QKV-------------LDVVKE 116
Y Y E ++ QK+ L+ +++
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 117 SRYYTDDPSQACIFILAIDTLDRDPLSS--NYVHNVPSKLLKLKH 159
++Y +I D +++ +++ + L+ K+
Sbjct: 527 LKFYKP-------YICDNDPKYERLVNAILDFLPKIEENLICSKY 564
>3g4n_A Aerolysin; toxin, cytolytic toxin, pore-forming toxin, membrane,
secret; 2.10A {Aeromonas hydrophila} PDB: 3g4o_A 1pre_A
1z52_A 3c0n_A 3c0m_A 3c0o_A*
Length = 470
Score = 29.8 bits (66), Expect = 1.2
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 42 WIDLNHEKDIESSPYLRRLGGDVLP---NNQKCRMETCFDFTKCIGDNFKVYIYPSNPDE 98
W+ N + + + R G + N+ C C D T NF + P +
Sbjct: 127 WVGGNDSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKH 186
Query: 99 EPNTISSLYQKVLDVVKESRYYTDDPSQA 127
T S Q V VV + +D P
Sbjct: 187 GDVTQSDR-QLVKTVVGWAVNDSDTPQSG 214
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 28.3 bits (63), Expect = 3.3
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 154 LLKLKHWNNGKNHIVFNLF--SGT--------WPDYLEEDLGFDTGQAILAKASMSVTHF 203
+++L + G V + SGT E +G + + L A M+
Sbjct: 210 MIELAELDGGS---VLDPMCGSGTILIELALRRYSG--EIIGIEKYRKHLIGAEMNAL-- 262
Query: 204 RTGFDVSIPLFQKD---LPERGGEPGAVISN 231
G I Q D L + ISN
Sbjct: 263 AAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293
>2wo1_A Ephrin type-A receptor; glycoprotein, AXON guidance, vascular
development, cell SURF receptor, transferase, cell
signaling; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A*
3ckh_A 3gxu_A 3nru_A
Length = 185
Score = 27.7 bits (61), Expect = 3.4
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 54 SPYLRRLGGDVLPNNQKCRMETCFDFTKCIGD---NFKVYIYPSNPDEEPNTISSLYQKV 110
+ ++ R G + K + C +G F +Y Y S+ D+E + + K+
Sbjct: 60 TDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKI 119
Query: 111 LDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNYVH 148
D + +T I L + D PLS +
Sbjct: 120 -DTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFY 156
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2
PDB: 1kfr_A*
Length = 147
Score = 27.3 bits (60), Expect = 4.5
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 5/64 (7%)
Query: 133 AIDTLDRDPLSSNYVHNVPSKLLKLKHWNNGKNHIVFNLFSGTWPDYLEEDLGFDTGQAI 192
+ + D H + F + Y + + G+A
Sbjct: 77 MLKEISNDAEVKKIAAQ-----YGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAA 131
Query: 193 LAKA 196
+ K
Sbjct: 132 VEKF 135
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 84 GDNFKVYIYPSNPDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFI 131
G FK + ++ D P S +V DV E+ +D+ + +
Sbjct: 321 GLPFKCALQFTHHDGTPAKGISGKVEVSDVRFETTTTSDNDGLIKLEL 368
>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase, glycoprotein; 1.95A {Homo
sapiens} PDB: 3skj_E 3czu_A* 3hei_A 3hpn_A
Length = 206
Score = 27.0 bits (59), Expect = 6.9
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 87 FKVYIYPSNPDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNY 146
F +Y S+ D N L+ K+ D + +A L ++ PL+
Sbjct: 123 FNLYYAESDLDYGTNFQKRLFTKI-DTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKG 181
Query: 147 VH 148
+
Sbjct: 182 FY 183
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 27.1 bits (59), Expect = 8.6
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 87 FKVYIYPSNPDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFILAIDTLDRDPLSSNY 146
F +Y S+ D N L+ K+ D + +A L ++ PL+
Sbjct: 124 FNLYYAESDLDYGTNFQKRLFTKI-DTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKG 182
Query: 147 VH 148
+
Sbjct: 183 FY 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.436
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,815,213
Number of extensions: 287110
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 18
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)