RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16948
         (297 letters)



>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 164

 Score = 31.2 bits (70), Expect = 0.071
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 77  FDFTKCIGDNFKVYIYPSN--PDEEPNTISSLYQKVLDVVKESRYYTDDPSQACIFILAI 134
           +  TK IG + K  I+PS     E  +        VL        +            A 
Sbjct: 10  YGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFI-------YGKYAS 62

Query: 135 DTLDRDPLSSNYVHNVPSKLLKLKHW-----NNGKNHIVFNLFSG 174
               R P     + +  +  L          +N  + +   + SG
Sbjct: 63  GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSG 107


>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
          {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 28.3 bits (63), Expect = 1.1
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 42 WIDLNHEKDIESSPYLRRLGGDVLP---NNQKCRMETCFDFTKCIGDNFKVYIYPSN 95
          W+  NH + +     + R G   +    N+  C    C D T     NF   + P +
Sbjct: 43 WVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDS 99


>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 286

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 83  IGDNFKVYIYPSNPDEEPNTISS-LYQKVLDVVKESRYYTDDPSQACIFILAIDTLDR 139
           I D F V  +P +P      +++ +Y+ V  +V        D     I     + LDR
Sbjct: 227 IIDAFLVSYFPLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDR 284


>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB,
           C-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
          Length = 171

 Score = 26.7 bits (59), Expect = 2.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 149 NVPSKLLKLKHWNNGKNHIVFNLFSGTWPD-YLEEDLGFD 187
           ++PS  +       G N I  N+ SG+  D YL  +  FD
Sbjct: 131 SIPSGTIV-----AGTNTITINVISGSSGDTYLSPNFIFD 165


>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 146

 Score = 25.1 bits (55), Expect = 7.2
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 89  VYIYPSNPDEE--PNTISSLYQKV--LDVVKESRYYTDDPSQACIFILAID 135
           V   PS+      PN I  +  +   L+ +++  ++ DD  Q+  F+   +
Sbjct: 55  VVSLPSDRPVMHWPNVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPE 105


>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2,
           catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 205

 Score = 25.7 bits (55), Expect = 7.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 93  PSNPDEEPNTISSLYQKVLDVV 114
           P++P  + N I+ + +K    V
Sbjct: 2   PASPRSQYNFIADVVEKTAPAV 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,217,859
Number of extensions: 58425
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 7
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)