BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16949
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 343 bits (879), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
Q EE YVCIY++R D +LFHH+GGVD+GDVDAKA KL + V + + E + LL++
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 342 bits (877), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
Q EE YVCIY++R D +LFHH+GGVD+GDVDAKA KL + V + + E + LL++
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 337 bits (863), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 156/223 (69%), Positives = 189/223 (84%), Gaps = 1/223 (0%)
Query: 10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
Q EE YVCIY++R D +LFHH+GGVD+GDVDAKA KL + V + + E + LL++
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWT VAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
DLGG +ELANYGEYSGAPSEQQTY+YAKTILSL T+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGK 336
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 26/221 (11%)
Query: 8 FDQDEEAYVCIYSSR--NSDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGV--TEE 59
D E Y+ I R N ++ QGGVDI +V A K +I + + G+ ++
Sbjct: 109 LDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQA 167
Query: 60 QVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
Q ++ L + P + A + LYN+++ + T +E+NP T + + D D
Sbjct: 168 QRMAENLGFLGPLQN-QAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 226
Query: 119 STADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG 178
A+F + +I F D E I + A L + G I V G
Sbjct: 227 DNAEF----RQKDI-----FAMDDKSENEPIEN----EAAKYDLKYIGLDGNIACFVNGA 273
Query: 179 GASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTI 219
G ++ D I GG AN+ + G E Q Y+ K +
Sbjct: 274 GLAMATCDIIFLNGGKP--ANFLDLGGGVKESQVYQAFKLL 312
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 26/221 (11%)
Query: 8 FDQDEEAYVCIYSSR--NSDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGV--TEE 59
D E Y+ I R N ++ QGGVDI +V A K +I + + G+ ++
Sbjct: 110 LDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQA 168
Query: 60 QVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
Q ++ L + P + A + LYN+++ + T +E+NP T + + D D
Sbjct: 169 QRMAENLGFLGPLQN-QAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 227
Query: 119 STADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG 178
A+F + +I F D E I + A L + G I V G
Sbjct: 228 DNAEF----RQKDI-----FAMDDKSENEPIEN----EAAKYDLKYIGLDGNIACFVNGA 274
Query: 179 GASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTI 219
G ++ D I GG AN+ + G E Q Y+ K +
Sbjct: 275 GLAMATCDIIFLNGGKP--ANFLDLGGGVKESQVYQAFKLL 313
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 26/221 (11%)
Query: 8 FDQDEEAYVCIYSSR--NSDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQV 61
D E Y+ I R N ++ QGGVDI +V A K +I + + G+ + Q
Sbjct: 110 LDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQA 168
Query: 62 --TSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
++ L + P + A + LYN+++ + T +E+NP T + + D D
Sbjct: 169 QRMAENLGFLGPLQN-QAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 227
Query: 119 STADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG 178
A+F + +I F D E I + A L + G I V G
Sbjct: 228 DNAEF----RQKDI-----FAMDDKSENEPIEN----EAAKYDLKYIGLDGNIACFVNGA 274
Query: 179 GASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTI 219
G ++ D I GG AN+ + G E Q Y+ K +
Sbjct: 275 GLAMATCDIIFLNGGKP--ANFLDLGGGVKESQVYQAFKLL 313
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 79 KFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPF 138
K L +++ +EINPLV+T I L KL + GN + P
Sbjct: 179 KIFMGLATIFLERDLALIEINPLVITKQGDLIC-LDGKLGAD---------GNALFRQPD 228
Query: 139 GRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELA 198
R+ + D A +L + G I MV G G ++ D + GG E A
Sbjct: 229 LREMRDQSQE--DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG--EPA 284
Query: 199 NYGEYSGAPSEQQTYEYAKTILS 221
N+ + G ++++ E K ILS
Sbjct: 285 NFLDVGGGATKERVTEAFKIILS 307
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 79 KFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPF 138
K L +++ +EINPLV+T I L KL + GN + P
Sbjct: 179 KIFMGLATIFLERDLALIEINPLVITKQGDLIC-LDGKLGAD---------GNALFRQPD 228
Query: 139 GRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELA 198
R+ + D A +L + G I MV G G ++ D + GG E A
Sbjct: 229 LREMRDQSQE--DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG--EPA 284
Query: 199 NYGEYSGAPSEQQTYEYAKTILS 221
N+ + G ++++ E K ILS
Sbjct: 285 NFLDVGGGATKERVTEAFKIILS 307
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 77 VAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLDSTADF 123
+A+ + ALY Y + + EINPLVVT D I D LD A F
Sbjct: 168 LAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALF 215
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 18 IYSSRNSDTILFHHQG-GVDI---GDVDAKALKLEIPVG--QTGVTEEQVTSKLLINVAP 71
+ ++ D + FH+ G G GD D K + PV ++G + KLL + P
Sbjct: 162 VKDAKPGDVLFFHYSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLP 221
Query: 72 AKKAMVAKFVTALYNMYVNLYFTYL 96
K + A F A ++L FTY+
Sbjct: 222 EKVRLTAVFDCAHSGSIMDLPFTYV 246
>pdb|4H0S|A Chain A, Crystal Structure Analysis Of A Basic Phospholipase A2
From Trimeresurus Stejnegeri Venom
pdb|4H0S|B Chain B, Crystal Structure Analysis Of A Basic Phospholipase A2
From Trimeresurus Stejnegeri Venom
pdb|4H0S|C Chain C, Crystal Structure Analysis Of A Basic Phospholipase A2
From Trimeresurus Stejnegeri Venom
Length = 137
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 175 VAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHP 229
+AG G V +DT C + YG+ + ++ +Y Y+ ++ EKHP
Sbjct: 46 MAGRGKPVDATDTCCSIHNCC----YGKVTSCSTKWDSYSYSWENGDIVCDEKHP 96
>pdb|3NEH|A Chain A, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
pdb|3NEH|B Chain B, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
Length = 318
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 182 VVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLM-TQEKH 228
+ + D IC+LGG + ++ G P + E+ S + T EKH
Sbjct: 243 IRHIDHICELGGLKNIGFGSDFDGIPDHVKGLEHVGKYQSFLETLEKH 290
>pdb|2WJ8|A Chain A, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|B Chain B, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|C Chain C, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|D Chain D, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|E Chain E, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|F Chain F, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|G Chain G, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|H Chain H, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|I Chain I, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|J Chain J, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|K Chain K, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|L Chain L, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|M Chain M, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|N Chain N, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|O Chain O, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|P Chain P, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|Q Chain Q, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|R Chain R, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|S Chain S, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|T Chain T, Respiratory Syncitial Virus Ribonucleoprotein
Length = 391
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 191 LGGASELANYGEYSGAPSEQQTYEYAK 217
LG A+ L GEY G P Q Y+ AK
Sbjct: 325 LGNAAGLGIMGEYRGTPRNQDLYDAAK 351
>pdb|2YHM|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHP|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|R Chain R, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|S Chain S, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|T Chain T, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|U Chain U, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|V Chain V, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|K Chain K, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|M Chain M, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|W Chain W, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Y Chain Y, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Z Chain Z, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
Length = 375
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 191 LGGASELANYGEYSGAPSEQQTYEYAK 217
LG A+ L GEY G P Q Y+ AK
Sbjct: 325 LGNAAGLGIMGEYRGTPRNQDLYDAAK 351
>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
Complex With A Transition-state Analogue
Length = 134
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 9 DQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLIN 68
D D++ Y C+ +S +DTI + G + +D K KLE PV TG E L
Sbjct: 62 DCDDKFYDCLKNS--ADTISSYFVGKMYFNLIDTKCYKLEHPV--TGCGERTEGRCLHYT 117
Query: 69 VAPAKKAMVAKF 80
V +K + F
Sbjct: 118 VDKSKPKVYQWF 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,152,655
Number of Sequences: 62578
Number of extensions: 295884
Number of successful extensions: 729
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 20
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)