Query psy16949
Match_columns 232
No_of_seqs 196 out of 1140
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02235 ATP citrate (pro-S)-l 100.0 9E-67 2E-71 482.5 22.2 218 3-231 108-332 (423)
2 COG0045 SucC Succinyl-CoA synt 100.0 1.5E-66 3.2E-71 471.6 20.9 201 10-231 102-312 (387)
3 PLN00124 succinyl-CoA ligase [ 100.0 7.2E-59 1.6E-63 433.1 21.0 201 10-231 139-348 (422)
4 KOG1447|consensus 100.0 1.4E-57 3.1E-62 396.3 12.7 203 8-231 128-339 (412)
5 PRK14046 malate--CoA ligase su 100.0 6E-56 1.3E-60 411.3 20.3 206 3-231 99-313 (392)
6 KOG2799|consensus 100.0 6.7E-53 1.4E-57 377.5 6.9 202 7-229 130-341 (434)
7 TIGR01016 sucCoAbeta succinyl- 100.0 6.7E-50 1.5E-54 369.9 20.0 206 3-231 99-313 (386)
8 PRK00696 sucC succinyl-CoA syn 100.0 1.1E-42 2.4E-47 322.0 21.3 207 2-231 98-313 (388)
9 PF08442 ATP-grasp_2: ATP-gras 99.9 9.4E-25 2E-29 186.3 11.4 97 3-103 98-202 (202)
10 KOG1254|consensus 99.6 2.8E-17 6.1E-22 153.1 -0.1 225 3-228 135-404 (600)
11 PF13549 ATP-grasp_5: ATP-gras 99.4 5.6E-13 1.2E-17 115.4 9.8 107 2-117 102-222 (222)
12 PF00549 Ligase_CoA: CoA-ligas 98.7 1.5E-08 3.3E-13 83.1 4.1 51 174-230 1-75 (153)
13 TIGR02717 AcCoA-syn-alpha acet 97.4 0.00032 6.9E-09 66.7 6.9 60 168-231 295-373 (447)
14 PF13607 Succ_CoA_lig: Succiny 69.7 9.9 0.00021 30.5 4.8 56 168-230 1-56 (138)
15 PTZ00187 succinyl-CoA syntheta 65.3 12 0.00025 34.4 4.9 59 167-231 168-227 (317)
16 TIGR01019 sucCoAalpha succinyl 63.9 14 0.00031 33.3 5.1 57 168-230 143-200 (286)
17 PRK06091 membrane protein FdrA 59.8 17 0.00038 35.8 5.2 58 167-230 192-254 (555)
18 PLN00125 Succinyl-CoA ligase [ 58.1 25 0.00054 32.0 5.7 56 168-230 150-207 (300)
19 PRK05678 succinyl-CoA syntheta 56.5 36 0.00078 30.8 6.4 57 168-230 145-202 (291)
20 PLN02522 ATP citrate (pro-S)-l 48.9 30 0.00065 34.6 5.0 58 168-231 167-225 (608)
21 TIGR02717 AcCoA-syn-alpha acet 42.1 50 0.0011 31.4 5.3 56 168-230 150-205 (447)
22 COG1042 Acyl-CoA synthetase (N 39.5 43 0.00094 33.4 4.5 59 168-230 299-376 (598)
23 PRK09744 DNA-binding transcrip 34.0 6.5 0.00014 28.4 -1.6 24 182-205 1-24 (75)
24 COG0281 SfcA Malic enzyme [Ene 30.0 63 0.0014 30.9 3.7 39 169-209 198-239 (432)
25 TIGR00789 flhB_rel flhB C-term 26.2 2.2E+02 0.0049 20.7 5.4 68 13-87 3-80 (82)
26 PF06533 DUF1110: Protein of u 20.9 75 0.0016 27.0 2.1 24 179-202 69-95 (188)
No 1
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=9e-67 Score=482.48 Aligned_cols=218 Identities=38% Similarity=0.693 Sum_probs=198.8
Q ss_pred cCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVT 82 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il~ 82 (232)
+|+++ |++||||||++||+++.|++|++||||||+.++++.+++|++.. |+++++ +|.++..++.+..+++.+++.
T Consensus 108 Ee~v~--i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~-gl~~~~-~~~~~~~l~~~~~~~~~~~l~ 183 (423)
T PLN02235 108 EPFVP--HDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA-PLTSEI-CAPLIATLPLEIRGKIEEFIK 183 (423)
T ss_pred EecCC--CcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC-CCCHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 34444 56999999999999777999999999999999999999999999 999999 899998898777899999999
Q ss_pred HHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhh--hhhhcCCC
Q psy16949 83 ALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIAD--LDSKSGAS 159 (232)
Q Consensus 83 ~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~--~a~~~g~~ 159 (232)
+||++|.++||+++|||||++ .+| ++|||||+.|||||+|||++.|..++||.+|+|+.+|+|..+.. ++++++
T Consensus 184 ~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~-- 260 (423)
T PLN02235 184 GVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSAS-- 260 (423)
T ss_pred HHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccC--
Confidence 999999999999999999999 666 99999999999999999997799999999999999877644433 444454
Q ss_pred cCceE--EecCCeEEEEecCchhHHHHHHHHHHcC--CCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 160 LKLTI--LNKKGRIWTMVAGGGASVVYSDTICDLG--GASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 160 ~~l~y--i~l~G~Ig~~vnGaGlamat~D~i~~~G--g~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
|+| ++|+||||||||||||||+|||+|+++| | +||||||+||+||.++|+++|++||++|++|||+|+
T Consensus 261 --l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g--~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ 332 (423)
T PLN02235 261 --LKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRK 332 (423)
T ss_pred --CceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCC--CCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcE
Confidence 777 9999999999999999999999999999 7 699999999999999999999999999999999986
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-66 Score=471.57 Aligned_cols=201 Identities=28% Similarity=0.390 Sum_probs=184.3
Q ss_pred CCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHH
Q psy16949 10 QDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAKFV 81 (232)
Q Consensus 10 i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~il 81 (232)
+.+|||+||++||+ +|++++|++||||||++++++ .+.++++.. |+++|+ +|++++.+| +..++++.+++
T Consensus 102 ~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~-g~~~~~-aR~la~~lgl~~~~~~~~~~ii 179 (387)
T COG0045 102 IKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLT-GLRPYQ-ARELAFKLGLEGELVKQVADII 179 (387)
T ss_pred ccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCcc-CCCHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence 44699999999999 799999999999999998754 567888888 999999 999999988 67899999999
Q ss_pred HHHHHHHHhcccceeeeeeeeecCC-c-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCC
Q psy16949 82 TALYNMYVNLYFTYLEINPLVVTND-T-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGAS 159 (232)
Q Consensus 82 ~~Ly~lf~e~da~llEINPL~~t~~-g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~ 159 (232)
.+||++|.++|++|+|||||++|.+ | ++|||||++|||||+||||+ +..+ ||.+ +|++.|..|++++
T Consensus 180 ~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~-~~~~-------~d~~-~ed~~e~~a~~~~-- 248 (387)
T COG0045 180 KKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPD-LAEL-------RDES-EEDPREAEASGYG-- 248 (387)
T ss_pred HHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcc-hhhh-------hccc-ccChhHHHhhhCC--
Confidence 9999999999999999999999985 3 99999999999999999996 4443 7777 5778999999998
Q ss_pred cCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 160 LKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 160 ~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
|+|++||||||||||||||||+|||+|+.+|| +||||||+||+||.++|+++|++| ++||++|+
T Consensus 249 --l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg--~PANFLDvGGgA~~e~v~~a~~~i----l~d~~vk~ 312 (387)
T COG0045 249 --LNYVELDGNIGCIVNGAGLAMATMDIVKLYGG--KPANFLDVGGGATAERVKEAFKLI----LSDPNVKA 312 (387)
T ss_pred --CceEEecCcEEEEecChhHHHHHHHHHHHcCC--CCcceeecCCCCCHHHHHHHHHHH----hcCCCccE
Confidence 99999999999999999999999999999999 699999999999999999998775 68999875
No 3
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=7.2e-59 Score=433.09 Aligned_cols=201 Identities=29% Similarity=0.396 Sum_probs=181.9
Q ss_pred CCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHH
Q psy16949 10 QDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAKFV 81 (232)
Q Consensus 10 i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~il 81 (232)
+.+|+|||++.||. +|+|++|.+|||+||++++. ..++++++.. ++++++ +++++..|+ +..++++.+++
T Consensus 139 ~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~~~id~~~-~l~~~~-a~~~~~~L~~~~~~~~~l~~ii 216 (422)
T PLN00124 139 LVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDIFK-GITDED-AAKVVDGLAPKVADRNDAIEQV 216 (422)
T ss_pred CCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeEEecCcCC-CCCHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999996 89999999999999987654 5678888998 999999 899988888 56789999999
Q ss_pred HHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCc
Q psy16949 82 TALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASL 160 (232)
Q Consensus 82 ~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~ 160 (232)
.+||++|.++|++++|||||++|++| ++|+|||+.+||||+|||++.|. + |+.++ ++|.|.+|+++|
T Consensus 217 ~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA~~R~~~~~~-~-------~~~~~-~~~~E~~a~~~~--- 284 (422)
T PLN00124 217 KKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKEIFA-L-------RDTSQ-EDPREVAAAKAD--- 284 (422)
T ss_pred HHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCchhhcChhhhh-c-------cCccc-CChhHHHHhhCC---
Confidence 99999999999999999999999998 99999999999999999997553 2 56663 456778888887
Q ss_pred CceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 161 KLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 161 ~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
||||+|+||||||||||||||+|||+|+.+|| +||||||+||+||.++|+++|+++ ++||++|+
T Consensus 285 -l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg--~pANFlD~GG~a~~~~v~~a~~ii----~~d~~vk~ 348 (422)
T PLN00124 285 -LNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--SPANFLDVGGNASEQQVVEAFKIL----TSDDKVKA 348 (422)
T ss_pred -CceECCCCcEEEEecCchHHHHHHHHHHHcCC--CcceeeecCCCCCHHHHHHHHHHH----hcCCCCcE
Confidence 99999999999999999999999999999999 599999999999999999998865 56899874
No 4
>KOG1447|consensus
Probab=100.00 E-value=1.4e-57 Score=396.31 Aligned_cols=203 Identities=28% Similarity=0.391 Sum_probs=186.0
Q ss_pred CCCCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHH
Q psy16949 8 FDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAK 79 (232)
Q Consensus 8 ~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~ 79 (232)
.+|.||-||+|.+||+ +||+++|++||||||.++++. .+.|+++.. |+.+.+ +.++++.|+ +....+.++
T Consensus 128 ~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk~piDI~~-gi~esq-~l~~Ak~L~F~G~l~~~aA~ 205 (412)
T KOG1447|consen 128 LDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFE-GIKESQ-ALRMAKNLGFVGPLKSQAAD 205 (412)
T ss_pred cccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhccccchhcc-CCchHH-HHHHHHhccccCcHHHHHHH
Confidence 4789999999999999 899999999999999998765 466888888 999999 888999998 678889999
Q ss_pred HHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCC
Q psy16949 80 FVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGA 158 (232)
Q Consensus 80 il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~ 158 (232)
-+++||.+|..-|++.+|||||+.|++| ++|+|||++|||||.|||+++++ -|..++++|+|.+|.++.
T Consensus 206 eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~fRQKdIFa---------md~~eE~dPrEveAakyn- 275 (412)
T KOG1447|consen 206 EITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFRQKDIFA---------MDDKEENDPREVEAAKYN- 275 (412)
T ss_pred HHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhhhhcceee---------cccccccCchhhhhhhcC-
Confidence 9999999999999999999999999998 99999999999999999998554 233446789999999986
Q ss_pred CcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 159 SLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 159 ~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
|+||.+||||+|+||||||||+|||+|+.+|| +||||||+||+...++|++||++ +++||.+|+
T Consensus 276 ---LnYigmDGNIaClVNGAGLAMATmDiIkLnGG--ePANFLDvGGgV~EdqV~~Af~i----lTaDPkVk~ 339 (412)
T KOG1447|consen 276 ---LNYIGMDGNIACLVNGAGLAMATMDIIKLNGG--EPANFLDVGGGVKEDQVYQAFKI----LTADPKVKA 339 (412)
T ss_pred ---cceeeccCceEEEEccchhhhheeeeEEecCC--CCcceeeccCcccHHHHHHHhhh----hccCCceeE
Confidence 99999999999999999999999999999999 59999999999999999999886 699999875
No 5
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=6e-56 Score=411.30 Aligned_cols=206 Identities=23% Similarity=0.359 Sum_probs=182.2
Q ss_pred cCccCCCCCceEEEEEEEeCC-CC-eEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN-SD-TILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~-~p-~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
|+|++ +.+|+||+++.||. +| ++++|.+||++||++++ +..+++|++.. ++++++ +|+++..+| ++..
T Consensus 99 e~~~~--~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~~-~~~~~~-~~~~~~~lg~~~~~~ 174 (392)
T PRK14046 99 ETADP--IERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAV-GLQQFQ-AREIAFGLGLDIKQV 174 (392)
T ss_pred EEecC--CCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCCCC-CCCHHH-HHHHHHHcCCCHHHH
Confidence 56664 46899999999999 66 55668899999999965 45678888888 999999 999999888 6788
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD 153 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a 153 (232)
+++.+++.+||++|.++|++|+|||||++|.+| ++|||+|+.|||||+|||++ +..+ |+.+ +++|.|.+|
T Consensus 175 ~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~-~~~~-------~~~~-~~~~~e~~a 245 (392)
T PRK14046 175 SRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPN-IAEM-------RDPS-QEDPREAQA 245 (392)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChh-HHhh-------cCcc-cCChhHHHH
Confidence 999999999999999999999999999999987 99999999999999999997 4333 5555 356778889
Q ss_pred hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
+++| ||||+|+||||||+|||||+|+|||+|+.+|| +||||+|+||.++++.+.+++++ +++||++++
T Consensus 246 ~~~~----l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg--~paNPlDlgg~a~~e~~~~aL~~----ll~Dp~Vda 313 (392)
T PRK14046 246 AEHG----LSYVGLDGDIGCIVNGAGLAMATMDMIKLAGG--EPANFLDVGGGASPERVAKAFRL----VLSDRNVKA 313 (392)
T ss_pred HHcC----CceEccCCcEEEEeCCccHHHHHHHHHHhcCC--CCcCCEEecCCCCHHHHHHHHHH----HHcCCCCCE
Confidence 9987 99999999999999999999999999999999 59999999999999999999665 557888764
No 6
>KOG2799|consensus
Probab=100.00 E-value=6.7e-53 Score=377.45 Aligned_cols=202 Identities=25% Similarity=0.328 Sum_probs=182.4
Q ss_pred CCCCCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHH
Q psy16949 7 TFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVA 78 (232)
Q Consensus 7 ~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~ 78 (232)
+....+|+|+||++||. +|++++|.+||++||++++.. .+.|++.+. |+++++ +..++..|+ +...+++.
T Consensus 130 Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k~pi~~~~-Gls~~~-a~~v~~~lgfs~~~~~~a~ 207 (434)
T KOG2799|consen 130 RKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKKPIDNNT-GLSPEI-ACLVADKLGFSPDGIRKAA 207 (434)
T ss_pred ecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhcccccccC-CCCHHH-HHHHHhhcCCCcccHHHHH
Confidence 34567899999999999 899999999999999997654 578999999 999999 888988898 67788999
Q ss_pred HHHHHHHHHHHhcccceeeeeeeeecCCc--eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhc
Q psy16949 79 KFVTALYNMYVNLYFTYLEINPLVVTNDT--IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKS 156 (232)
Q Consensus 79 ~il~~Ly~lf~e~da~llEINPL~~t~~g--~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~ 156 (232)
+.+.+||++|.+.|++++|||||+.+.++ ++|.|+|+.|||||.|||...+. + ||++ +|+|.|..|+++
T Consensus 208 ~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~fRq~~iF~-~-------rd~~-QEd~re~~aak~ 278 (434)
T KOG2799|consen 208 KAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKIFL-L-------RDLS-QEDPREVTAAKV 278 (434)
T ss_pred HHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHHHHhhhhhh-c-------cchh-hcCchhhhHHHh
Confidence 99999999999999999999999987643 99999999999999999985332 2 8888 688999999999
Q ss_pred CCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCC
Q psy16949 157 GASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHP 229 (232)
Q Consensus 157 g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~ 229 (232)
. |||+.||||||||||||||||||||+|+.+||. ||||||+||+|+.++++++|++ +++||++
T Consensus 279 ~----ln~igldG~igC~vngaglamaTmdiiklhgg~--panfldVGg~Atve~v~eaf~l----itsd~kv 341 (434)
T KOG2799|consen 279 D----LNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT--PANFLDVGGGATVEQVREAFSL----ITSDKKV 341 (434)
T ss_pred c----cceeccCCccceeeccchhhhhheeeeeecCCC--CcceeeeCCCCcHHHHHHHHHH----HhcChhH
Confidence 7 999999999999999999999999999999994 9999999999999999999876 5777765
No 7
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=6.7e-50 Score=369.87 Aligned_cols=206 Identities=29% Similarity=0.384 Sum_probs=181.3
Q ss_pred cCccCCCCCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
|+|++ +.+|+|+|++.||. +|+|++|.+||++||++++. +.++.+++.. ++++++ ++.+...++ +...
T Consensus 99 Ee~v~--~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~-~~~~~~-a~~~~~~l~~~~~~~ 174 (386)
T TIGR01016 99 EEATD--IDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLT-GLLPYQ-AREIAKKLGLEGELV 174 (386)
T ss_pred EECcc--CCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCc-CCCHHH-HHHHHHHcCCCHHHH
Confidence 56664 36999999999996 89999999999999999765 3456677777 999999 888877777 6788
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD 153 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a 153 (232)
+++.+++.+||++|.++|++++|||||+++++| ++|+|||+.|||||+|||++ +..+ |+.++ +.+.|.+|
T Consensus 175 ~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~-~~~~-------~~~~~-~~~~e~~~ 245 (386)
T TIGR01016 175 KQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPD-LEEM-------RDYSQ-EDPREVLA 245 (386)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHH-HHHh-------hcCCc-CChhhhHH
Confidence 999999999999999999999999999999986 99999999999999999996 4433 56664 45678899
Q ss_pred hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
+++| |+||+|+||||||+||||++|+|||++..+|| +|+||+|+||.++.+.+.+++++ +++||++++
T Consensus 246 ~~~~----l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~--~~aNplDlgg~a~~~~~~~al~~----l~~dp~vd~ 313 (386)
T TIGR01016 246 KQWG----LNYVALDGNIGCMVNGAGLAMATMDIIKLYGG--EPANFLDVGGGASAERVREALKL----VLSDKSVKV 313 (386)
T ss_pred HHcC----CcEEccCCcEEEEECCccHHHHHHHHHHHcCC--CCCCcEEecCCCCHHHHHHHHHH----HHcCCCCCE
Confidence 9998 99999999999999999999999999999999 59999999999999999999665 567888764
No 8
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=1.1e-42 Score=321.99 Aligned_cols=207 Identities=28% Similarity=0.375 Sum_probs=176.7
Q ss_pred ccCccCCCCCceEEEEEEEeCC-CCeE-EEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhH
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRN-SDTI-LFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAK 73 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~i-i~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~ 73 (232)
-|||++ +.+|+|++++.||. +|++ ++|.+||+++|.+++ ...++.+++.. ++++++ ++++...++ +..
T Consensus 98 Ve~~~~--~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p~~-~~~~~~-a~~~~~~~~~~~~~ 173 (388)
T PRK00696 98 VEEGAD--IAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLT-GLQPFQ-AREIAFKLGLPGEQ 173 (388)
T ss_pred EEeccC--CCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCCCC-CCCHHH-HHHHHHHcCCCHHH
Confidence 367774 46899999999999 8876 588999999999887 33466677766 788888 888888766 678
Q ss_pred HHHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhh
Q psy16949 74 KAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADL 152 (232)
Q Consensus 74 ~~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~ 152 (232)
.++++++|.+||++|.++|+.++|||||+++++| ++|+|||+.+||||.|||++ |.++ ++.++ ..+.|.+
T Consensus 174 ~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~-~~~~-------~~~~~-~~~~e~~ 244 (388)
T PRK00696 174 VKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPD-LAEL-------RDLSE-EDPLEAE 244 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHh-HHhh-------cCCCc-CChhhhH
Confidence 8999999999999999999999999999999998 99999999999999999996 6544 33332 2345667
Q ss_pred hhhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 153 DSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 153 a~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
++.+| |+||+|+||||+|+||||++|+|+|++..+|| +|+||+|+||.++++.+.+++++ +++||++++
T Consensus 245 ~~~~~----~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~--~~~NPvDl~g~~~~e~~~~aL~~----l~~d~~vd~ 313 (388)
T PRK00696 245 ASKYG----LNYVKLDGNIGCMVNGAGLAMATMDIIKLYGG--EPANFLDVGGGATAERVAEAFKI----ILSDPNVKA 313 (388)
T ss_pred HHhcC----CcEEecCCcEEEEECCchHHHHHHHHHHHcCC--CcCCeEEecCCCCHHHHHHHHHH----HhcCCCCCE
Confidence 77776 99999999999999999999999999999999 49999999999999999999554 567888753
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=99.92 E-value=9.4e-25 Score=186.27 Aligned_cols=97 Identities=31% Similarity=0.461 Sum_probs=83.7
Q ss_pred cCccCCCCCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
+|++ ++++||||||++||+ +|+|++|++||||||+++++ ..+++|++.. |+++++ +++++..+| ++..
T Consensus 98 ee~v--~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~-g~~~~~-~~~i~~~lg~~~~~~ 173 (202)
T PF08442_consen 98 EEFV--DIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTE-GLTPYQ-AREIAKKLGLPGKLA 173 (202)
T ss_dssp EE-----CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTT-B--HHH-HHHHHHHTTS-CHHH
T ss_pred EecC--ccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCC-CCCHHH-HHHHHHhccccHHHH
Confidence 3444 457999999999999 79999999999999998654 4678899998 999999 999999988 5788
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeee
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVV 103 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~ 103 (232)
+++.+++.+||++|.++||+|+|||||++
T Consensus 174 ~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 174 EQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 99999999999999999999999999985
No 10
>KOG1254|consensus
Probab=99.63 E-value=2.8e-17 Score=153.07 Aligned_cols=225 Identities=27% Similarity=0.317 Sum_probs=188.6
Q ss_pred cCccCCC----CCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCC--CCCHHHHHHHHHHhcChhHHHH
Q psy16949 3 SEVSTFD----QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQT--GVTEEQVTSKLLINVAPAKKAM 76 (232)
Q Consensus 3 ~~m~~~~----i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~--gl~~~~v~~~i~~~l~~~~~~~ 76 (232)
||.+++. .-.|+||.+..+|.+.++.+|..|||++|+.+.++++...++.-. +=..+- ...+..++.-.+...
T Consensus 135 ePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~p-gSTl~dhi~r~q~~~ 213 (600)
T KOG1254|consen 135 EPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYP-GSTLIDHIPREQHDP 213 (600)
T ss_pred cCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCcc-CchHhhhhhhhhccC
Confidence 6777773 357999999999999999999999999999988776554333221 111233 455556666555667
Q ss_pred HHHHHHHHHHHHHhcccceeeee-------eeeecCCc----eEEecceeeccCccccccccccC---------------
Q psy16949 77 VAKFVTALYNMYVNLYFTYLEIN-------PLVVTNDT----IYILDLAAKLDSTADFICRAQWG--------------- 130 (232)
Q Consensus 77 l~~il~~Ly~lf~e~da~llEIN-------PL~~t~~g----~~alDaki~iDdnA~fR~~~~~~--------------- 130 (232)
+.+++..|+.+|.+.|.+++|+| ||+.-..+ ++-+|..+..|+.|.|...+.|.
T Consensus 214 ~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpe 293 (600)
T KOG1254|consen 214 LVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPE 293 (600)
T ss_pred hhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCcc
Confidence 89999999999999999999999 99885333 79999999999999999888787
Q ss_pred -----------CCCCCCCCCCCCChhhhchhhhhhhcCCCcCceEEecCCeEEEEecCc-hhHHHHHHHHHHcCCCCCCC
Q psy16949 131 -----------NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG-GASVVYSDTICDLGGASELA 198 (232)
Q Consensus 131 -----------~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~l~yi~l~G~Ig~~vnGa-Glamat~D~i~~~Gg~~~pA 198 (232)
.++++.+|+|.....|.+.-....+.+.+++|..++..|+|+|++.|. |..+.+.|+....|-+.+-+
T Consensus 294 sf~~l~~~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG 373 (600)
T KOG1254|consen 294 SFDALGADIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELG 373 (600)
T ss_pred chhhhhhhhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhcc
Confidence 778888899998888888888888888999999999999999999999 99999999999999877899
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHHHh-cCCC
Q psy16949 199 NYGEYSGAPSEQQTYEYAKTILSLMT-QEKH 228 (232)
Q Consensus 199 NflD~GG~a~~~~v~~~~~~il~~~~-~~~~ 228 (232)
|+-.+||-+...++.+..+..+++|+ -+|+
T Consensus 374 ~gg~~Sllw~~~~lp~Ya~kfie~~~m~~aD 404 (600)
T KOG1254|consen 374 NGGVYSLLWFQRRLPQYARKFIEICTMLTAD 404 (600)
T ss_pred ccceEccccccccchHHHHHHHHHHhhccCC
Confidence 99999999999999999999999998 4443
No 11
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=99.44 E-value=5.6e-13 Score=115.44 Aligned_cols=107 Identities=23% Similarity=0.392 Sum_probs=74.7
Q ss_pred ccCccCCCCCceEEEEEEEeCC-CCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcC----------
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRN-SDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA---------- 70 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~---------- 70 (232)
-|+|++. ...|+.+++..|+. ||+|+|+ .||+.+|-+.+....++ |++ ... ++++...+.
T Consensus 102 Vq~m~~~-~g~El~vG~~~Dp~FGPvv~~G-~GG~~vE~~~D~~~~l~-Pl~-----~~~-a~~mi~~l~~~~lL~G~RG 172 (222)
T PF13549_consen 102 VQEMAPS-GGRELIVGVRRDPQFGPVVMFG-LGGIFVELLKDVAFRLP-PLS-----EAD-AREMIRELRAYPLLRGYRG 172 (222)
T ss_dssp EEE-------EEEEEEEEEETTTEEEEEEE-E-STTHHHH---EEEES-S-------HHH-HHHHHHTSTTHHHHH----
T ss_pred EEEcccC-CcEEEEEEEEECCCCCCEEEEc-CCCceeeeecceEEeeC-CCC-----HHH-HHHHHHHHHhHHhhcccCC
Confidence 3899885 56999999999999 9999999 99999999888877776 444 445 444433221
Q ss_pred --hhHHHHHHHHHHHHHHHHHhc-ccceeeeeeeeecCCceEEecceeec
Q psy16949 71 --PAKKAMVAKFVTALYNMYVNL-YFTYLEINPLVVTNDTIYILDLAAKL 117 (232)
Q Consensus 71 --~~~~~~l~~il~~Ly~lf~e~-da~llEINPL~~t~~g~~alDaki~i 117 (232)
+.+++.++++|.+++++..++ +..-+|||||.++.+|++|+||+|.+
T Consensus 173 ~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g~~avDa~i~l 222 (222)
T PF13549_consen 173 RPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDGAVAVDARIRL 222 (222)
T ss_dssp ---B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS-EEE--EEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCceEEEEEEEEC
Confidence 356889999999999999997 56669999999999999999999975
No 12
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.69 E-value=1.5e-08 Score=83.10 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=45.4
Q ss_pred EecCchhHHHHHHHHHHc--------------CCCCCCCeeEecCCCCC----------HHHHHHHHHHHHHHHhcCCCC
Q psy16949 174 MVAGGGASVVYSDTICDL--------------GGASELANYGEYSGAPS----------EQQTYEYAKTILSLMTQEKHP 229 (232)
Q Consensus 174 ~vnGaGlamat~D~i~~~--------------Gg~~~pANflD~GG~a~----------~~~v~~~~~~il~~~~~~~~~ 229 (232)
|+|||||+|.|||+|+.+ |+ +|+||||+||.+. ++.+.++++. +.+||++
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~--~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~----~~~Dp~v 74 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGG--GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEI----EAADPEV 74 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETC--TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHH----HHTSTTE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCC--CceeEEEeCCCcccccCcCCCcCHHHHHHHHHH----HhcCCCc
Confidence 689999999999999999 88 5999999999999 7899999654 5688887
Q ss_pred C
Q psy16949 230 Q 230 (232)
Q Consensus 230 ~ 230 (232)
+
T Consensus 75 ~ 75 (153)
T PF00549_consen 75 K 75 (153)
T ss_dssp S
T ss_pred c
Confidence 5
No 13
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.43 E-value=0.00032 Score=66.70 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=49.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCC-------------------CCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGAS-------------------ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKH 228 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~-------------------~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~ 228 (232)
..+|+++.||+|+++.+.|.+..+|... .++|++|++|.++++.+.++++ .+++||+
T Consensus 295 g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~----~l~~dp~ 370 (447)
T TIGR02717 295 GNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALK----TVAEDEN 370 (447)
T ss_pred CCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHH----HHHcCCC
Confidence 5789999999999999999999999851 1239999999999998888855 4567888
Q ss_pred CCC
Q psy16949 229 PQG 231 (232)
Q Consensus 229 ~~~ 231 (232)
+++
T Consensus 371 vd~ 373 (447)
T TIGR02717 371 VDG 373 (447)
T ss_pred CCE
Confidence 753
No 14
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=69.70 E-value=9.9 Score=30.48 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++...++++.+.++.....|-- ..-|.-+|..++. .+.+. |+-+.+||+++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g--~s~~vs~Gn~~dv-~~~d~----l~~~~~D~~t~ 56 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIG--FSYVVSVGNEADV-DFADL----LEYLAEDPDTR 56 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-E--ESEEEE-TT-SSS--HHHH----HHHHCT-SS--
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC--eeEEEEeCccccC-CHHHH----HHHHhcCCCCC
Confidence 389999999999999999999999863 6778888887753 34444 66678898875
No 15
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=65.27 E-value=12 Score=34.39 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=47.0
Q ss_pred cCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCC-CHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 167 KKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAP-SEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 167 l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a-~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
..|+||++.-.++|+...++.+...|- --..+.-+||.+ ..-....+ |+.+.+||+++.
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~----L~~~~~Dp~T~~ 227 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGL--GQSTCVGIGGDPFNGTNFIDC----LKLFLNDPETEG 227 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC--CEEEEEEeCCCCCCCCCHHHH----HHHHhhCCCccE
Confidence 379999999999999999999999986 378899999987 22334444 566778998863
No 16
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=63.90 E-value=14 Score=33.28 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCC-HHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPS-EQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~-~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+|+.+.-.++++.+.+|.....|- .-.-|.-+|+.+. .-..... |+-+.+||+++
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~gi--G~S~~Vs~Gn~a~~dv~~~D~----l~~l~~Dp~T~ 200 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGF--GQSTCVGIGGDPVNGTSFIDV----LEAFEKDPETE 200 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCC--CeEEEEEeCCCcCCCCCHHHH----HHHHhhCCCCc
Confidence 69999999999999999999999986 3788999999853 1234444 55577889875
No 17
>PRK06091 membrane protein FdrA; Validated
Probab=59.85 E-value=17 Score=35.79 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=45.5
Q ss_pred cCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCC-----CCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 167 KKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGA-----PSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 167 l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~-----a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
..|+||++.-.++++...++.+...|.- -..++-+||. +..-.+..+ |+-+.+||+++
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG--~S~~Vs~Gn~Dls~~~ggi~~~D~----L~~L~~DP~Tk 254 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEG--ITHAIGLGGRDLSAEVGGISALTA----LEMLSADEKSE 254 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCC--eEEEEECCCCccccccCCCCHHHH----HHHHhhCCCCc
Confidence 3799999999999999999999999984 8899999987 211134444 55577899875
No 18
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=58.12 E-value=25 Score=31.98 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCC--CCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGA--PSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~--a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+|+++.-.++++++.++.....|-- -.-+.-+|+. ++. .+... |+-+.+||+++
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~giG--~S~~VS~Gn~~~adv-~~~d~----L~yl~~Dp~T~ 207 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVGLG--QSTCVGIGGDPFNGT-NFVDC----LEKFVKDPQTE 207 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcCCC--eEEEEEeCCCCCCCC-CHHHH----HHHHhhCCCCc
Confidence 699999999999999999999988863 7889999998 653 23333 55677899886
No 19
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.51 E-value=36 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCH-HHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSE-QQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~-~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+|+.+.-.++++.+.+|.....|-- -..|.-+|..+.. -..... |+-+.+||+++
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG--~s~~Vs~Gn~~~~dv~~~D~----l~~l~~Dp~T~ 202 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFG--QSTCVGIGGDPINGTNFIDV----LEAFEEDPETE 202 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCC--eEEEEEeCCCcCCCCCHHHH----HHHHhhCCCCc
Confidence 699999999999999999999999873 7889999988431 123333 45567899886
No 20
>PLN02522 ATP citrate (pro-S)-lyase
Probab=48.93 E-value=30 Score=34.57 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=46.1
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCC-HHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPS-EQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~-~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
.|+||++.-.++|+...+|.+...|-- -.-+.-+||.+. .-..... |+.+.+||+++.
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~GlG--~S~~VsiGnd~~~g~~~~D~----L~~~~~Dp~Tk~ 225 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTDG--IYEGIAIGGDVFPGSTLSDH----VLRFNNIPQIKM 225 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCC--eEEEEEeCCCCCCCCCHHHH----HHHHhcCCCCCE
Confidence 799999999999999999999998863 678899999774 1233444 555788998863
No 21
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=42.07 E-value=50 Score=31.44 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=45.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+|+++.-.++++.+.+|.....|- ...-|.-+|+.++ -.+... |+-+.+||+++
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~--g~s~~vs~Gn~~d-~~~~d~----l~~l~~D~~t~ 205 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGV--GFSYFVSLGNKAD-IDESDL----LEYLADDPDTK 205 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCC--CcceEEECCchhh-CCHHHH----HHHHhhCCCCC
Confidence 69999999999999999999999887 3889999999875 233333 66678888876
No 22
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=39.49 E-value=43 Score=33.41 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCC-------------------CCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGAS-------------------ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKH 228 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~-------------------~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~ 228 (232)
.-+++.+.||+|.+....|.+...|... ..+|=+|+-|.++.+.-+++.+++ .++++
T Consensus 299 g~~~~ivtn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~----~~~~~ 374 (598)
T COG1042 299 GDRVAIITNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEIL----LRDEN 374 (598)
T ss_pred CcceeEEecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHH----HhccC
Confidence 4688999999999999999999999841 245999999999999888886654 45555
Q ss_pred CC
Q psy16949 229 PQ 230 (232)
Q Consensus 229 ~~ 230 (232)
+.
T Consensus 375 ~~ 376 (598)
T COG1042 375 VD 376 (598)
T ss_pred Cc
Confidence 43
No 23
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=34.02 E-value=6.5 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCCCCCeeEecCC
Q psy16949 182 VVYSDTICDLGGASELANYGEYSG 205 (232)
Q Consensus 182 mat~D~i~~~Gg~~~pANflD~GG 205 (232)
|.+-|+|.++|+..+.|++|.+.-
T Consensus 1 M~K~Dvi~yFGs~~kvA~aLGIs~ 24 (75)
T PRK09744 1 MLKIDAIAFFGSKTKLANAAGVRL 24 (75)
T ss_pred CcHHHHHHHhCcHHHHHHHHCCCH
Confidence 678899999999667899887643
No 24
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=30.02 E-value=63 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=31.3
Q ss_pred CeEEEEecCchhH-HHHHHHHHHcCCCCCCCee--EecCCCCCH
Q psy16949 169 GRIWTMVAGGGAS-VVYSDTICDLGGASELANY--GEYSGAPSE 209 (232)
Q Consensus 169 G~Ig~~vnGaGla-mat~D~i~~~Gg~~~pANf--lD~GG~a~~ 209 (232)
.++=+++||||.| +++.++|..+|- ++.|+ +|.-|-.+.
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~--~~~~i~~~D~~G~l~~ 239 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGV--KEENIFVVDRKGLLYD 239 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCC--CcccEEEEecCCcccC
Confidence 5677889999975 889999999997 58898 788876543
No 25
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=26.24 E-value=2.2e+02 Score=20.70 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=39.0
Q ss_pred eEEEEEEEeCC---CCeEEEEcCCCCcccccccccc--eeeeecCCCCCCHHHHHHHHHH-hcC----hhHHHHHHHHHH
Q psy16949 13 EAYVCIYSSRN---SDTILFHHQGGVDIGDVDAKAL--KLEIPVGQTGVTEEQVTSKLLI-NVA----PAKKAMVAKFVT 82 (232)
Q Consensus 13 E~Ylsi~~Dr~---~p~ii~S~~GG~dIEe~~~~~~--~~~i~~~~~gl~~~~v~~~i~~-~l~----~~~~~~l~~il~ 82 (232)
.+=+++..|+. .|.+++...|-+. +.+-+... .+|+--+. .+ +|.+.. .+| .+..+.++++|.
T Consensus 3 h~AVAL~Yd~~~~~aP~VvAKG~g~~A-~~I~~~A~e~~VPi~~~~-----~L-Ar~L~~~~ig~~IP~~ly~aVAeil~ 75 (82)
T TIGR00789 3 KKAVALSYDTGKDKAPKVVASGVGEVA-ERIIEIAKKHGIPIVEDP-----DL-VDVLLKLDLDDEIPEELYEVVAEIFA 75 (82)
T ss_pred eEEEEEEeCCCCCCCCEEEEEeCCHHH-HHHHHHHHHcCCCEEeCH-----HH-HHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 34577788876 5888888666432 11211112 33433333 34 666652 233 567888888888
Q ss_pred HHHHH
Q psy16949 83 ALYNM 87 (232)
Q Consensus 83 ~Ly~l 87 (232)
-+|++
T Consensus 76 ~v~~l 80 (82)
T TIGR00789 76 FLYTQ 80 (82)
T ss_pred HHHHh
Confidence 88764
No 26
>PF06533 DUF1110: Protein of unknown function (DUF1110); InterPro: IPR010535 This entry contains proteins with no known function at present, found in the Poaceae.
Probab=20.86 E-value=75 Score=27.02 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=19.1
Q ss_pred hhHHHHH---HHHHHcCCCCCCCeeEe
Q psy16949 179 GASVVYS---DTICDLGGASELANYGE 202 (232)
Q Consensus 179 Glamat~---D~i~~~Gg~~~pANflD 202 (232)
|+||+.| |++..+||++.|+-.+.
T Consensus 69 ~lA~s~MgaA~LLalrGgs~~P~~pl~ 95 (188)
T PF06533_consen 69 GLAMSLMGAAELLALRGGSPNPSAPLS 95 (188)
T ss_pred HHHHHHHhHHHHHhhcCCCCCCCCCCc
Confidence 4888888 89999999877776653
Done!