Query psy16949
Match_columns 232
No_of_seqs 196 out of 1140
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 2.6E-66 8.8E-71 483.0 19.6 229 2-231 107-335 (425)
2 3pff_A ATP-citrate synthase; p 100.0 1.2E-63 4.1E-68 494.4 20.4 230 2-232 107-336 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 6E-55 2.1E-59 403.7 22.9 206 3-231 106-320 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 1.8E-54 6.2E-59 399.7 20.4 206 3-231 99-313 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 3E-52 1E-56 385.9 18.0 205 3-231 91-304 (397)
6 1wr2_A Hypothetical protein PH 99.7 5.9E-17 2E-21 139.0 10.9 109 2-120 112-237 (238)
7 2csu_A 457AA long hypothetical 99.1 5.4E-11 1.9E-15 111.5 5.2 65 162-231 286-371 (457)
8 3dmy_A Protein FDRA; predicted 67.2 6.1 0.00021 36.9 5.0 58 168-230 249-330 (480)
9 3dmy_A Protein FDRA; predicted 61.5 15 0.00052 34.2 6.5 57 168-230 112-173 (480)
10 2yv1_A Succinyl-COA ligase [AD 59.3 19 0.00066 30.9 6.5 57 168-230 150-207 (294)
11 1oi7_A Succinyl-COA synthetase 58.9 19 0.00063 30.9 6.2 57 168-230 144-201 (288)
12 2fp4_A Succinyl-COA ligase [GD 57.6 10 0.00035 33.0 4.4 57 168-230 152-209 (305)
13 2yv2_A Succinyl-COA synthetase 55.9 22 0.00074 30.6 6.2 57 168-230 151-208 (297)
14 3mwd_B ATP-citrate synthase; A 47.2 24 0.00083 31.2 5.1 56 168-230 168-225 (334)
15 2nu8_A Succinyl-COA ligase [AD 47.0 20 0.00069 30.6 4.5 57 168-230 144-201 (288)
16 2csu_A 457AA long hypothetical 41.7 27 0.00092 31.9 4.7 55 169-230 150-204 (457)
17 3pff_A ATP-citrate synthase; p 27.9 55 0.0019 32.6 4.6 57 168-230 654-711 (829)
18 2k89_A PLA2P, PLAP, phospholip 27.1 1.4E+02 0.0046 20.9 5.3 37 46-83 30-68 (80)
19 3glk_A Acetyl-COA carboxylase 23.2 1.7E+02 0.0059 27.1 6.9 27 2-30 271-297 (540)
20 3jrx_A Acetyl-COA carboxylase 22.2 2.2E+02 0.0076 26.8 7.5 27 2-30 287-313 (587)
21 1q4k_B Serine/threonine-protei 20.3 50 0.0017 28.1 2.3 17 162-178 79-95 (259)
22 3ouz_A Biotin carboxylase; str 20.1 2.8E+02 0.0096 24.3 7.5 27 2-30 203-229 (446)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=2.6e-66 Score=482.99 Aligned_cols=229 Identities=69% Similarity=1.181 Sum_probs=208.7
Q ss_pred ccCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHH
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFV 81 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il 81 (232)
-|||+++++.+|+||||+.||.+|+|++|++|||+||+++++++++++|+++ +++.+++.+++...+.+..+++++++|
T Consensus 107 Ve~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~-~l~~~~~~~~ll~g~~~~d~~~la~~l 185 (425)
T 3mwd_A 107 IEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDE-KLNPEDIKKHLLVHAPEDKKEILASFI 185 (425)
T ss_dssp EEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTC-CCCHHHHHHTTTTTSCTTTHHHHHHHH
T ss_pred EEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCcc-ccCHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4899988888999999999999999999999999999999998888999999 999888334454445567789999999
Q ss_pred HHHHHHHHhcccceeeeeeeeecCCceEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCcC
Q psy16949 82 TALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLK 161 (232)
Q Consensus 82 ~~Ly~lf~e~da~llEINPL~~t~~g~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~ 161 (232)
.+||++|+++|++++|||||++|++|++|+|||++|||||+|||++.|..++++.+|.|+.+|+|.+..+.+++.|++++
T Consensus 186 ~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~ 265 (425)
T 3mwd_A 186 SGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK 265 (425)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccC
Confidence 99999999999999999999999989999999999999999999988998888888889999887655555567777888
Q ss_pred ceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 162 LTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 162 l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
||||+|+||||||||||||||+|||+|+++||.++||||||+||+||+++++++++.+|+++++|||+|+
T Consensus 266 l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~ 335 (425)
T 3mwd_A 266 LTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG 335 (425)
T ss_dssp EEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTC
T ss_pred ccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999999999999999999999999943499999999999999999999999999999999987
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-63 Score=494.36 Aligned_cols=230 Identities=69% Similarity=1.181 Sum_probs=210.8
Q ss_pred ccCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHH
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFV 81 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il 81 (232)
-|||+++++.+||||||+.||.+|+|++|++|||+||++++++.++++|+.. +++.+++.+++...+.+..+++++++|
T Consensus 107 VE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~-gl~~~~a~~~ll~g~~~~d~~ala~~L 185 (829)
T 3pff_A 107 IEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDE-KLNPEDIKKHLLVHAPEDKKEILASFI 185 (829)
T ss_dssp EEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTC-CCCHHHHHHTTTTTSCGGGHHHHHHHH
T ss_pred EEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCcc-ccCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4899998888999999999999999999999999999999988888999998 999999435555555677899999999
Q ss_pred HHHHHHHHhcccceeeeeeeeecCCceEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCcC
Q psy16949 82 TALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLK 161 (232)
Q Consensus 82 ~~Ly~lf~e~da~llEINPL~~t~~g~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~ 161 (232)
.+||++|+++|++++|||||++|++|++|||||++|||||+|||++.|..++++.+|.|+.+|+|.+..+.+++.|++++
T Consensus 186 ~~Ly~lf~d~d~t~lEINPLvvt~dgv~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~ 265 (829)
T 3pff_A 186 SGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK 265 (829)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEETTEEEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHhCCccEEEeeceEecCCceEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccC
Confidence 99999999999999999999999999999999999999999999988998888878889999888666555667788888
Q ss_pred ceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16949 162 LTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232 (232)
Q Consensus 162 l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~~ 232 (232)
||||+||||||||||||||||+|||+|+++||.++||||||+||+|+.++|+++++.+|+++++||++|+.
T Consensus 266 l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~i 336 (829)
T 3pff_A 266 LTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336 (829)
T ss_dssp EEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCE
T ss_pred ccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 99999999999999999999999999999999545999999999999999999999999999999999873
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=6e-55 Score=403.72 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=186.7
Q ss_pred cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccc----ccccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDV----DAKALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~----~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
|+|++ +.+|+|++++.||. + |++++|++||++||++ ++++.+++|++.. ++++++ ++++++.+| +...
T Consensus 106 Ee~v~--~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~-~l~~~~-a~~l~~~lg~~~~~~ 181 (395)
T 2fp4_B 106 AEALD--ISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQ-AQRMAENLGFLGPLQ 181 (395)
T ss_dssp EECCC--CSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTT-CCCHHH-HHHHHHHTTCCHHHH
T ss_pred EEccC--CceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCC-CCCHHH-HHHHHHHhCcCHHHH
Confidence 56665 46999999999999 4 9999999999999999 6677889999999 999999 999999888 6678
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD 153 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a 153 (232)
.++++++.+||++|.++|++++|||||++|.+| ++|+|||+.|||||+|||++ +..+ ||.+ +|+|.|.+|
T Consensus 182 ~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~-------~d~~-~~~~~e~~a 252 (395)
T 2fp4_B 182 NQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKD-IFAM-------DDKS-ENEPIENEA 252 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHH-HHTT-------CCCT-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcc-hhhh-------cCCC-ccChhhhhH
Confidence 999999999999999999999999999999885 99999999999999999997 3333 6767 466788899
Q ss_pred hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
++++ |||++|+||||||+|||||+|+|||+|+.+|| +||||||+||+|+.++++++|+++ ++|||+|+
T Consensus 253 ~~~~----l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg--~paNflDvgG~a~~e~~~~al~~i----l~d~~v~~ 320 (395)
T 2fp4_B 253 AKYD----LKYIGLDGNIACFVNGAGLAMATCDIIFLNGG--KPANFLDLGGGVKESQVYQAFKLL----TADPKVEA 320 (395)
T ss_dssp HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBCEEEECCSSCCHHHHHHHHHHH----HHCTTCCE
T ss_pred HHcC----CceeccCCeEEEEecCchHHHHHHHHHHHcCC--CcCCcEEECCCCCHHHHHHHHHHH----hCCCCCCE
Confidence 9987 99999999999999999999999999999999 599999999999999999997764 58899875
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=1.8e-54 Score=399.74 Aligned_cols=206 Identities=23% Similarity=0.284 Sum_probs=186.9
Q ss_pred cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
|+|++ +.+|+|++++.||. + |++++|++|||+||++++ ++.+++++|.. ++++++ ++++++.+| +...
T Consensus 99 Ee~v~--~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~-gl~~~~-a~~~~~~lG~~~~~~ 174 (388)
T 2nu8_B 99 EAATD--IAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLT-GPMPYQ-GRELAFKLGLEGKLV 174 (388)
T ss_dssp EECCC--EEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTT-BCCHHH-HHHHHHHTTCCTHHH
T ss_pred EEccc--cCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCC-CCCHHH-HHHHHHHcCCCHHHH
Confidence 56665 35899999999999 5 999999999999999875 44677888888 999999 999998887 6789
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD 153 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a 153 (232)
+++++++.+||++|.++|++++|||||+++++| ++|+|||+.|||||+|||++ |.++ |+.+ +|+|.|.+|
T Consensus 175 ~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~~~~-------~~~~-~~~~~e~~a 245 (388)
T 2nu8_B 175 QQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LREM-------RDQS-QEDPREAQA 245 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HHHH-------CCGG-GSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-hhhh-------cCcc-ccChhHHHH
Confidence 999999999999999999999999999999887 99999999999999999996 7655 6666 577889999
Q ss_pred hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
+++| |+|++|+||||||+|||||+|+|||+|+++|| +||||||+||+|+.++++++|++|| +|||+|+
T Consensus 246 ~~~~----l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg--~~aNflD~gG~a~~~~~~~~~~~il----~d~~v~~ 313 (388)
T 2nu8_B 246 AQWE----LNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG--EPANFLDVGGGATKERVTEAFKIIL----SDDKVKA 313 (388)
T ss_dssp HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBCEEEECCSCCCHHHHHHHHHHHH----TSTTCCE
T ss_pred HHhc----CCccCCCCEEEEEeCCCchhhhhhHHHHHcCC--CcCceeEecCCCCHHHHHHHHHHHh----cCCCCCE
Confidence 9987 99999999999999999999999999999999 5999999999999999999988765 8899875
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=3e-52 Score=385.91 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=184.1
Q ss_pred cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949 3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK 74 (232)
Q Consensus 3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~ 74 (232)
|+|++ +.+|+|++++.||. + |+|++|.+|||+||++++ ++.+++|++.. ++++++ ++++++.+| +. +
T Consensus 91 Ee~v~--~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~-~l~~~~-a~~~~~~lG~~g~-~ 165 (397)
T 3ufx_B 91 AEAVD--IAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHK-GFRPFE-AREMVKRAGLEGN-L 165 (397)
T ss_dssp EECCC--EEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTT-BCCHHH-HHHHHHHHTCCSC-H
T ss_pred EEeec--CCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCC-CCCHHH-HHHHHHHcCCchH-H
Confidence 56664 35899999999999 5 999999999999999865 45677888888 999999 899988887 45 9
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949 75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD 153 (232)
Q Consensus 75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a 153 (232)
++++++|.+||++|.++|++++|||||++|.+| ++|+|||+.|||||+|||++ |..+ |+.+ +|+|.|.+|
T Consensus 166 ~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~-------~~~~-~~~~~e~~a 236 (397)
T 3ufx_B 166 NKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAEL-------REVE-AEHPLEVEA 236 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTT-------HHHH-CSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhh-------cCcc-cCCHhHHHH
Confidence 999999999999999999999999999999887 99999999999999999996 7665 5555 466788899
Q ss_pred hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949 154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG 231 (232)
Q Consensus 154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~ 231 (232)
+++| |||++|+||||||+|||||+|+|||+|..+|| +||||+|+||+|+++++++++++++ +||++++
T Consensus 237 ~~~~----l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~--~~aN~lD~gG~a~~e~~~~al~~~l----~d~~v~~ 304 (397)
T 3ufx_B 237 SNYG----FAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGG--KPANFLDIGGGAKADVVYNALKVVL----KDPDVKG 304 (397)
T ss_dssp HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBSEEEECCSCCCHHHHHHHHHHHH----TCTTCCE
T ss_pred HHcC----CCcccCCCcEEEEecCccHHHHHHHHHHHcCC--CcCCcEecCCCCCHHHHHHHHHHHH----cCCCCCE
Confidence 9987 99999999999999999999999999999999 5999999999999999999988765 6898875
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.70 E-value=5.9e-17 Score=138.98 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=89.0
Q ss_pred ccCccCCCCCceEEEEEEEeCC-CCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhc-------C---
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRN-SDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV-------A--- 70 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l-------~--- 70 (232)
-|+|++. .+|+|++++.|+. +|++++| .||+++|...+....++ + +++++ ++++...+ |
T Consensus 112 VEe~i~~--g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~~~~--P----l~~~~-~~~~~~~~~~~~~~~g~~G 181 (238)
T 1wr2_A 112 VAPMLKP--GREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTFRLV--P----ITEKD-ARKMIQEIKAYPILAGARG 181 (238)
T ss_dssp EEECCCC--CEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEEEES--S----CCHHH-HHHHHHTSTTHHHHHCC--
T ss_pred EEECCCC--CeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceeeecC--C----CCHHH-HHHHHHHHHHHHHhcCCCC
Confidence 3778774 5899999999996 8999999 99999998765433333 2 45566 66665443 4
Q ss_pred --hhHHHHHHHHHHHHHHHHHhcc--cceeeeeeeeecCC--ceEEecceeeccCc
Q psy16949 71 --PAKKAMVAKFVTALYNMYVNLY--FTYLEINPLVVTND--TIYILDLAAKLDST 120 (232)
Q Consensus 71 --~~~~~~l~~il~~Ly~lf~e~d--a~llEINPL~~t~~--g~~alDaki~iDdn 120 (232)
..+++.++++|.+||++|.+.| +.++|||||+++++ +++|+|||+.+|||
T Consensus 182 ~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 182 EEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 2568899999999999999998 89999999999977 69999999999998
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.09 E-value=5.4e-11 Score=111.46 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=55.9
Q ss_pred ceEEec--CCeEEEEecCchhHHHHHHHHHHcCCC-------------------CCCCeeEecCCCCCHHHHHHHHHHHH
Q psy16949 162 LTILNK--KGRIWTMVAGGGASVVYSDTICDLGGA-------------------SELANYGEYSGAPSEQQTYEYAKTIL 220 (232)
Q Consensus 162 l~yi~l--~G~Ig~~vnGaGlamat~D~i~~~Gg~-------------------~~pANflD~GG~a~~~~v~~~~~~il 220 (232)
|+| .+ +++|++|+||+|++|.++|++..+|+. ..|+||+|+||.++++.+.+++++
T Consensus 286 l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~-- 362 (457)
T 2csu_A 286 FSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKL-- 362 (457)
T ss_dssp TTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHH--
T ss_pred hcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHH--
Confidence 677 66 799999999999999999999999994 127899999999999999999665
Q ss_pred HHHhcCCCCCC
Q psy16949 221 SLMTQEKHPQG 231 (232)
Q Consensus 221 ~~~~~~~~~~~ 231 (232)
+++||++++
T Consensus 363 --~l~dp~vd~ 371 (457)
T 2csu_A 363 --LLQDPNVDM 371 (457)
T ss_dssp --HHHSTTCSE
T ss_pred --HhcCCCCCE
Confidence 567888753
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=67.23 E-value=6.1 Score=36.87 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCC-CCCC-------------eeEecCC------CC----CHHHHHHHHHHHHHHH
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGA-SELA-------------NYGEYSG------AP----SEQQTYEYAKTILSLM 223 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~-~~pA-------------NflD~GG------~a----~~~~v~~~~~~il~~~ 223 (232)
..+|+.+.||+|++..+.|++.. |+. ..+. |..|++. +| +++...++ ++.+
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~d~~~~~~a----l~~~ 323 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQL----IADL 323 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHH----HHHG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCCCHHHHHHH----HHHH
Confidence 45799999999999999999988 552 1111 6777774 11 44556666 5667
Q ss_pred hcCCCCC
Q psy16949 224 TQEKHPQ 230 (232)
Q Consensus 224 ~~~~~~~ 230 (232)
+.||+++
T Consensus 324 l~D~~vd 330 (480)
T 3dmy_A 324 GAKPQVR 330 (480)
T ss_dssp GGCTTEE
T ss_pred hcCCCCC
Confidence 7888764
No 9
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=61.55 E-value=15 Score=34.15 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCC-----CHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAP-----SEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a-----~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++++.+.+|.+...|-- -..|.=+||.+ ..-.+... |+-+..||+++
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~g~G--~S~~Vs~Gn~~l~~~i~dv~~~D~----l~~l~~Dp~T~ 173 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALAGEG--ITHAIGLGGRDLSREVGGISALTA----LEMLSADEKSE 173 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCC--EEEEEECCTTTTSTTTTTHHHHHH----HHHHHTCTTCC
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCC--ceEEEEcCCCccccccCCCCHHHH----HHHHhcCCCCC
Confidence 699999999999999999999998873 78999999983 33445555 56678899886
No 10
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=59.33 E-value=19 Score=30.90 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCH-HHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSE-QQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~-~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++++.+.+|.+...|-- -..|.=+||.+.. -..... |+-+.+||+++
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~g~G--~s~~vs~G~~~~~~~~~~d~----l~~~~~D~~T~ 207 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAGFG--VSTCVGIGGDPIVGLRYKEV----LDLFEKDDETE 207 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCC--EEEEEECCSSSSCSSCHHHH----HHHHHTCTTCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCC--eEEEEeeCCCCCCCCCHHHH----HHHHhcCCCCC
Confidence 599999999999999999999998863 7889999998831 223333 44567899886
No 11
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=58.90 E-value=19 Score=30.94 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCH-HHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSE-QQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~-~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++++.+.+|.+...|-- -..|.=+||.+.. -..... |+-+.+||+++
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g~G--~s~~vs~G~~~~~~~~~~d~----l~~~~~D~~t~ 201 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAGLG--TTTTVGIGGDPVIGTTFKDL----LPLFNEDPETE 201 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCC--EEEEEECCSSSCCSSCHHHH----HHHHHTCTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCC--EEEEEeeCCCcCCCCCHHHH----HHHHhcCCCCC
Confidence 599999999999999999999998863 7889999998831 233333 45567899886
No 12
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=57.56 E-value=10 Score=32.95 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCC-HHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPS-EQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~-~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++++...+|.+...|-- ...|.=+||.+. .-..... |+-+..||+++
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~g~G--~S~~vs~G~~~~~~~~~~d~----l~~~~~Dp~T~ 209 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQVGLG--QSLCVGIGGDPFNGTDFTDC----LEIFLNDPATE 209 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCC--EEEEEECCSSSSCSCCHHHH----HHHHHHCTTCC
T ss_pred CCCEEEEecchHHHHHHHHHHHhcCCC--eeEEeccCCCcCCCCCHHHH----HHHHhcCCCCc
Confidence 599999999999999999999998873 789999999872 2334444 45567888876
No 13
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=55.92 E-value=22 Score=30.64 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCH-HHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSE-QQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~-~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++++.+.+|.+...|-- -..|.=+||.+.. -..... |+-+.+||+++
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g~G--~s~~vs~G~~~~~~~~~~d~----l~~~~~D~~T~ 208 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQGIG--QSTVIGIGGDPIVGLSFTEA----LKLFQEDPQTE 208 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCC--EEEEEECCSSSSCSSCHHHH----HHHHHTCTTCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC--eeEEEeeCCCcCCCCCHHHH----HHHHhcCCCCC
Confidence 599999999999999999999998863 7889999998831 223333 44567899876
No 14
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=47.18 E-value=24 Score=31.15 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=44.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCC--CCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGA--PSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~--a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++|+...+|.+...|-- -..|.-+||. +. -..... |+.+.+||+++
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g~G--~S~~VsiGn~~~~d-~~~~D~----l~~~~~Dp~T~ 225 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTTDG--VYEGVAIGGDRYPG-STFMDH----VLRYQDTPGVK 225 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSC--EEEEEECCSSSSCS-SCHHHH----HHHHHTCTTCC
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcCCC--eEEEEECCCCccCC-CCHHHH----HHHHhcCCCCC
Confidence 699999999999999999999988863 7889999998 44 233344 55677899876
No 15
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=46.98 E-value=20 Score=30.65 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCC-HHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPS-EQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~-~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||.+.-.++++-..+|.+...|-- -..|.-+||.+. .-..... |+-+..||+++
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~g~G--~s~~vs~G~~~~~~~~~~d~----l~~l~~D~~t~ 201 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDYGFG--QSTCVGIGGDPIPGSNFIDI----LEMFEKDPQTE 201 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCC--EEEEEECCSSSSCSSCHHHH----HHHHHTCTTCC
T ss_pred CCCEEEEECcHHHHHHHHHHHHhcCCC--EEEEEeeCCCcCCCCCHHHH----HHHHhcCCCCC
Confidence 599999999999999999999888863 788999999873 1233344 55567899886
No 16
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=41.68 E-value=27 Score=31.94 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=45.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 169 GRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 169 G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
|+||++.-.++++...+|.+...|-- -..|.=+||.+. -.+... |+-+.+||+++
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G--~s~~vs~G~~~~-~~~~d~----l~~~~~D~~t~ 204 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIG--FSKFISVGNMAD-VDFAEL----MEYLADTEEDK 204 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCE--ESEEEECTTCCS-SCHHHH----HHHHTTCSSCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCC--eeEEEECCCcCC-CCHHHH----HHHHhcCCCCC
Confidence 99999999999999999999999873 789999999985 233333 66788999886
No 17
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=27.92 E-value=55 Score=32.55 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=44.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCC-CHHHHHHHHHHHHHHHhcCCCCC
Q psy16949 168 KGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAP-SEQQTYEYAKTILSLMTQEKHPQ 230 (232)
Q Consensus 168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a-~~~~v~~~~~~il~~~~~~~~~~ 230 (232)
.|+||++.-.++|+...+|.+...|-- -..|.=+||.+ ..-.+... |+.+.+||+++
T Consensus 654 ~G~VgiVSqSGal~~~i~~~~~~~g~G--~S~~VsiGnd~~~d~~~~D~----L~~l~~Dp~T~ 711 (829)
T 3pff_A 654 PGSVAYVSRSGGMSNELNNIISRTTDG--VYEGVAIGGDRYPGSTFMDH----VLRYQDTPGVK 711 (829)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSC--EEEEEECCSSSSCSSCHHHH----HHHHHTCTTCC
T ss_pred CCcEEEEechhHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCCHHHH----HHHHhhCCCCC
Confidence 589999999999999999999988863 67899999974 12234444 55577899886
No 18
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=27.11 E-value=1.4e+02 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.4
Q ss_pred eeeeecCCCCCCHHHHHHHHHH--hcChhHHHHHHHHHHH
Q psy16949 46 KLEIPVGQTGVTEEQVTSKLLI--NVAPAKKAMVAKFVTA 83 (232)
Q Consensus 46 ~~~i~~~~~gl~~~~v~~~i~~--~l~~~~~~~l~~il~~ 83 (232)
.+++|+|. +=.++.++++... .|+...+++++++|.+
T Consensus 30 ~lkLpyN~-~dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~ 68 (80)
T 2k89_A 30 SYKLPYNT-SDDPWLTAYNFLQKNDLNPMFLDQVAKFIID 68 (80)
T ss_dssp CEEEEECT-TSCHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ccccCccC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35667777 8899997777543 3777888899988765
No 19
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=23.23 E-value=1.7e+02 Score=27.11 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=19.7
Q ss_pred ccCccCCCCCceEEEEEEEeCCCCeEEEE
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRNSDTILFH 30 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S 30 (232)
.|++++. .+|+.+.+..|+.+.++.+.
T Consensus 271 VEe~I~g--~rei~V~vl~d~~G~vv~l~ 297 (540)
T 3glk_A 271 LMKLAQH--ARHLEVQILADQYGNAVSLF 297 (540)
T ss_dssp EEECCSS--EEEEEEEEEECTTSCEEEEE
T ss_pred EEEecCC--CcEEEEEEEEcCCCCEEEEe
Confidence 3566655 37999999999887766543
No 20
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=22.23 E-value=2.2e+02 Score=26.81 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=19.9
Q ss_pred ccCccCCCCCceEEEEEEEeCCCCeEEEE
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRNSDTILFH 30 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S 30 (232)
.|++++. .+|+.+.+..|+.+.++.+.
T Consensus 287 VEeyI~g--~rei~V~vl~D~~G~vv~l~ 313 (587)
T 3jrx_A 287 LMKLAQH--ARHLEVQILADQYGNAVSLF 313 (587)
T ss_dssp EEECCCS--CEEEEEEEEECSSSCEEEEE
T ss_pred EEEecCC--CcEEEEEEEEcCCCCEEEEe
Confidence 3666665 38999999999887766543
No 21
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=20.31 E-value=50 Score=28.12 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=15.8
Q ss_pred ceEEecCCeEEEEecCc
Q psy16949 162 LTILNKKGRIWTMVAGG 178 (232)
Q Consensus 162 l~yi~l~G~Ig~~vnGa 178 (232)
|-|+-.||.|||+.|.+
T Consensus 79 ~GYqLsdgsvGvlFND~ 95 (259)
T 1q4k_B 79 LGYQLCDNSVGVLFNDS 95 (259)
T ss_dssp EEEEETTSCEEEEETTS
T ss_pred eeEEecCCcEEEEEeCC
Confidence 99999999999999975
No 22
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=20.11 E-value=2.8e+02 Score=24.34 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=19.8
Q ss_pred ccCccCCCCCceEEEEEEEeCCCCeEEEE
Q psy16949 2 YSEVSTFDQDEEAYVCIYSSRNSDTILFH 30 (232)
Q Consensus 2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S 30 (232)
.|++++.. +|+.+.+..|..+.++.+.
T Consensus 203 vEe~i~g~--~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 203 MEKYIQNP--RHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp EEECCSSC--EEEEEEEEECTTSCEEEEE
T ss_pred EEeCCCCC--cEEEEEEEEcCCCCEEEEe
Confidence 36676653 7999999999887766554
Done!