RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16949
         (232 letters)



>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 169 GRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           G I  MV G G ++   D +   GG  E AN+ +  G  ++++  E  K ILS
Sbjct: 19  GNIGCMVNGAGLAMGTMDIVKLHGG--EPANFLDVGGGATKERVTEAFKIILS 69


>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 238

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 4   EVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDV----DAKALKLEIPVGQTGVTEE 59
             +   ++      +  S      +   +GGV+I  V         K+ +      +  +
Sbjct: 100 AATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQ 159

Query: 60  QVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
                  + +         K    L  +++      +EINPLV+T    +  LD     D
Sbjct: 160 GRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGAD 219

Query: 119 STADF 123
             A F
Sbjct: 220 GNALF 224


>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
           N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 4   EVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTS 63
           E     ++    + +  S N   ++   QGGVDI +V A   +L        +   + + 
Sbjct: 108 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 167

Query: 64  KLLI----NVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
              +          +   A  +  LYN+++ +  T +E+NP   T +  +   D     D
Sbjct: 168 AQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 227

Query: 119 STADF 123
             A+F
Sbjct: 228 DNAEF 232


>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
           C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 148

 Score = 31.3 bits (71), Expect = 0.039
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 169 GRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           G I   V G G ++   D I   GG    AN+ +  G   E Q Y+  K + +
Sbjct: 19  GNIACFVNGAGLAMATCDIIFLNGGKP--ANFLDLGGGVKESQVYQAFKLLTA 69


>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus
           subtilis [TaxId: 1423]}
          Length = 299

 Score = 25.0 bits (54), Expect = 9.1
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 76  MVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYP 135
           M       ++  Y N    YLE NP +     +Y L+L  ++ S  +   RA +   ++ 
Sbjct: 1   MYNLHREKIFMSY-NQNKQYLEDNPEIQEKIELYGLNLLNEVISDNEEEIRADYNEANFL 59

Query: 136 PPFGRDAYPEE 146
            PF  +  P +
Sbjct: 60  HPFWMNYPPLD 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,890
Number of extensions: 36539
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)