BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1695
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG4|J Chain J, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|L Chain L, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|N Chain N, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|P Chain P, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|R Chain R, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|T Chain T, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|V Chain V, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|X Chain X, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Z Chain Z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 223
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 60 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
PG G +V FI +IF GTS + KF R+ + S ++LT+ + S T
Sbjct: 41 PGQGLEWVGGFI--AIF------GTSNYAQKFQGRVTITADESTSTAYMELTS-LTSEDT 91
Query: 120 A---CDRAI-FIFDEVDKFPKGLLDVI 142
A C R I + D + +G L +
Sbjct: 92 AVYYCARGISGSYGWFDPWGQGTLVTV 118
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 55 SLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89
+L G PGTGK + +++ YKDK T+RFV+
Sbjct: 48 TLLGRPGTGKTVT----LRKLWELYKDKTTARFVY 78
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 46 YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY 79
Y K I ++GL GTGK V F++S + K++
Sbjct: 40 YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 43 QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-PNEN 101
Q RY +TK +I+ GLP G NY D+ V+ + K+ K + F S + P E
Sbjct: 91 QPRYADTKLGSINSMGLPNLGINYYLDY-VTELQKQPDSK------NHFLSLVGMSPEET 143
Query: 102 HVSLYRLQLT--------NWIISNVTACDRAIFIFDEVDK 133
H L ++ + N NV + + F+ D+
Sbjct: 144 HTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQ 183
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP-GTGKNYVTDFI 71
++ L ++LK V GQ+ AI + A+K H K + L P G GK VT +
Sbjct: 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508
Query: 72 VSSI--------FKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD 122
++ Y ++ T SR + + F LT+ +I +
Sbjct: 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG-------LLTDAVIKH----P 557
Query: 123 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIFLFLSNSGGTE 172
A+ + DE++K + ++++ +D+ + + + F+N + + +N+G E
Sbjct: 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRE 611
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 124 AIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNTFLE 179
++ + D ++K + ++++ ++ + + + F+NTI + SN G +E E
Sbjct: 581 SVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640
Query: 180 LRKSECIEFIFQCQPLKVY 198
L+++ EFI + + V+
Sbjct: 641 LKRAFRPEFINRIDEIIVF 659
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 91
+ L+G PGTGK + + +S + S FVHK+
Sbjct: 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246
>pdb|4A8J|C Chain C, Crystal Structure Of The Elongator Subcomplex Elp456
pdb|4A8J|F Chain F, Crystal Structure Of The Elongator Subcomplex Elp456
Length = 280
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNY-----VTDFIVSSIFKRYKDKGTSR 86
SH A H QN + N SL+ L NY ++DFIV++I + +DK S
Sbjct: 82 SHAVLASFIHEQNYFTN------SLNKLKIPSNNYNVLDFLSDFIVNNIHNKPRDKILSD 135
Query: 87 FVHKFNSRI-HFPNENHVSLYRLQLTNWIISNVTACD 122
+ KF++ I + P + V + + +L ++S +T +
Sbjct: 136 VLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSE 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,131,221
Number of Sequences: 62578
Number of extensions: 240072
Number of successful extensions: 705
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)