Query psy1695
Match_columns 202
No_of_seqs 202 out of 1626
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:50:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2170|consensus 100.0 7.5E-37 1.6E-41 241.3 16.7 194 1-199 62-255 (344)
2 COG0542 clpA ATP-binding subun 100.0 5E-34 1.1E-38 251.9 12.8 184 12-198 481-689 (786)
3 PF06309 Torsin: Torsin; Inte 100.0 2.6E-27 5.7E-32 166.9 12.8 123 1-128 5-127 (127)
4 CHL00095 clpC Clp protease ATP 99.9 2.4E-26 5.3E-31 209.6 14.0 176 12-195 499-713 (821)
5 TIGR03345 VI_ClpV1 type VI sec 99.9 7.5E-26 1.6E-30 206.1 12.8 174 12-193 556-760 (852)
6 KOG1051|consensus 99.9 2.2E-25 4.7E-30 199.6 14.4 157 11-176 551-718 (898)
7 TIGR02639 ClpA ATP-dependent C 99.9 3.2E-25 6.9E-30 200.2 14.0 172 12-194 444-642 (731)
8 PRK11034 clpA ATP-dependent Cl 99.9 2.2E-25 4.7E-30 200.1 12.7 173 12-195 448-647 (758)
9 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-24 2.3E-29 199.4 14.6 179 12-198 555-760 (852)
10 PRK10865 protein disaggregatio 99.9 9.1E-24 2E-28 192.9 13.1 177 12-196 558-761 (857)
11 PF07724 AAA_2: AAA domain (Cd 99.8 2.3E-21 5E-26 146.1 6.7 136 50-194 1-170 (171)
12 TIGR00382 clpX endopeptidase C 99.8 9.1E-19 2E-23 147.7 13.9 143 12-168 67-247 (413)
13 KOG0989|consensus 99.8 9.1E-19 2E-23 139.4 9.6 140 7-173 26-173 (346)
14 PRK12323 DNA polymerase III su 99.8 1.3E-17 2.9E-22 145.8 14.4 151 22-192 16-182 (700)
15 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-17 3.8E-22 134.7 13.9 160 10-189 11-188 (287)
16 PRK05342 clpX ATP-dependent pr 99.7 3.3E-17 7.1E-22 138.8 12.9 148 11-168 60-239 (412)
17 PRK14956 DNA polymerase III su 99.7 6.1E-17 1.3E-21 138.2 12.2 133 23-170 19-162 (484)
18 PF05496 RuvB_N: Holliday junc 99.7 9.6E-17 2.1E-21 124.0 11.0 124 22-169 24-159 (233)
19 PRK14958 DNA polymerase III su 99.7 2.1E-16 4.6E-21 137.3 14.2 134 23-171 17-161 (509)
20 PRK14949 DNA polymerase III su 99.7 1.5E-16 3.3E-21 143.2 13.3 135 22-171 16-161 (944)
21 PRK07003 DNA polymerase III su 99.7 9.5E-17 2.1E-21 142.2 11.6 136 22-172 16-162 (830)
22 TIGR02880 cbbX_cfxQ probable R 99.7 2.4E-16 5.2E-21 128.0 13.1 161 10-190 10-188 (284)
23 COG0466 Lon ATP-dependent Lon 99.7 8.5E-17 1.8E-21 140.3 10.4 147 10-170 311-477 (782)
24 PRK14964 DNA polymerase III su 99.7 3.8E-16 8.3E-21 134.4 13.7 134 23-171 14-158 (491)
25 PRK07994 DNA polymerase III su 99.7 3.1E-16 6.7E-21 138.6 12.7 135 22-171 16-161 (647)
26 PRK14952 DNA polymerase III su 99.7 5.2E-16 1.1E-20 136.2 13.9 133 23-170 14-159 (584)
27 PRK07764 DNA polymerase III su 99.7 3.6E-16 7.7E-21 141.9 13.1 134 23-171 16-162 (824)
28 COG1223 Predicted ATPase (AAA+ 99.7 1.5E-16 3.2E-21 124.6 8.8 163 22-202 121-300 (368)
29 PRK14960 DNA polymerase III su 99.7 8.9E-16 1.9E-20 134.7 14.0 134 23-171 16-160 (702)
30 TIGR02881 spore_V_K stage V sp 99.7 6.3E-16 1.4E-20 124.2 12.1 151 18-189 3-170 (261)
31 TIGR00763 lon ATP-dependent pr 99.7 3.1E-16 6.7E-21 142.9 11.2 149 10-170 308-474 (775)
32 PRK07940 DNA polymerase III su 99.7 1.2E-15 2.6E-20 128.7 13.8 138 22-169 5-157 (394)
33 PLN03025 replication factor C 99.7 5.3E-16 1.2E-20 128.1 11.2 138 7-172 3-142 (319)
34 COG2812 DnaX DNA polymerase II 99.7 1.2E-16 2.7E-21 137.2 7.4 158 23-200 17-185 (515)
35 PRK14965 DNA polymerase III su 99.7 1.8E-15 3.8E-20 133.6 14.3 134 22-170 16-160 (576)
36 PRK14951 DNA polymerase III su 99.7 1.7E-15 3.7E-20 133.6 13.6 132 23-171 17-166 (618)
37 PF13177 DNA_pol3_delta2: DNA 99.7 1E-15 2.2E-20 114.5 10.1 130 26-172 1-145 (162)
38 PRK14969 DNA polymerase III su 99.6 3.6E-15 7.8E-20 130.3 14.8 133 22-171 16-161 (527)
39 PRK14957 DNA polymerase III su 99.6 2.8E-15 6E-20 130.7 13.6 132 23-169 17-159 (546)
40 PRK14961 DNA polymerase III su 99.6 2.8E-15 6E-20 125.8 12.8 132 22-170 16-160 (363)
41 KOG0991|consensus 99.6 2E-15 4.3E-20 116.6 10.2 139 7-173 17-157 (333)
42 PF00158 Sigma54_activat: Sigm 99.6 4.7E-15 1E-19 111.5 12.1 132 24-172 1-147 (168)
43 PRK08691 DNA polymerase III su 99.6 6.1E-15 1.3E-19 130.4 14.0 135 22-171 16-161 (709)
44 PRK07133 DNA polymerase III su 99.6 7.6E-15 1.6E-19 130.7 13.6 130 23-169 19-158 (725)
45 PRK06645 DNA polymerase III su 99.6 6.5E-15 1.4E-19 127.6 12.9 129 23-170 22-169 (507)
46 PRK14955 DNA polymerase III su 99.6 1.1E-14 2.3E-19 123.7 13.8 128 23-169 17-167 (397)
47 PRK14962 DNA polymerase III su 99.6 8.4E-15 1.8E-19 126.2 13.3 127 23-168 15-156 (472)
48 PRK05563 DNA polymerase III su 99.6 8.2E-15 1.8E-19 128.9 13.1 133 22-169 16-159 (559)
49 PRK09111 DNA polymerase III su 99.6 7.7E-15 1.7E-19 129.5 12.7 133 22-171 24-174 (598)
50 KOG2004|consensus 99.6 3.5E-15 7.5E-20 130.2 9.9 147 10-171 399-566 (906)
51 PRK08451 DNA polymerase III su 99.6 1.2E-14 2.7E-19 126.1 13.1 129 23-169 15-157 (535)
52 PRK05896 DNA polymerase III su 99.6 1.8E-14 3.8E-19 126.1 13.9 132 23-169 17-159 (605)
53 PRK14954 DNA polymerase III su 99.6 2.1E-14 4.6E-19 127.0 14.1 129 22-169 16-167 (620)
54 COG2256 MGS1 ATPase related to 99.6 5.3E-15 1.1E-19 122.0 9.3 110 22-151 24-133 (436)
55 PRK14959 DNA polymerase III su 99.6 1.7E-14 3.7E-19 126.8 13.0 134 23-171 17-161 (624)
56 PRK05564 DNA polymerase III su 99.6 1.9E-14 4.2E-19 118.5 12.2 126 22-169 4-133 (313)
57 COG1222 RPT1 ATP-dependent 26S 99.6 3.5E-15 7.5E-20 121.4 7.4 145 23-186 152-313 (406)
58 PRK07471 DNA polymerase III su 99.6 2.8E-14 6.1E-19 119.4 13.2 133 22-171 19-183 (365)
59 PRK06647 DNA polymerase III su 99.6 2.9E-14 6.2E-19 125.2 13.6 132 23-169 17-159 (563)
60 PRK14963 DNA polymerase III su 99.6 2.7E-14 5.8E-19 124.0 13.2 132 23-169 15-156 (504)
61 PRK07399 DNA polymerase III su 99.6 3.3E-14 7.1E-19 116.9 12.6 130 22-169 4-163 (314)
62 PRK14948 DNA polymerase III su 99.6 2.9E-14 6.2E-19 126.5 13.1 131 22-169 16-161 (620)
63 PRK06305 DNA polymerase III su 99.6 3.2E-14 6.8E-19 122.3 12.8 133 22-169 17-161 (451)
64 KOG0734|consensus 99.6 1.7E-14 3.8E-19 122.5 10.8 160 21-202 303-487 (752)
65 PRK13531 regulatory ATPase Rav 99.6 4.4E-15 9.5E-20 126.7 7.2 158 12-193 10-176 (498)
66 COG0470 HolB ATPase involved i 99.6 2.6E-14 5.6E-19 117.8 11.1 131 23-172 2-152 (325)
67 PRK10787 DNA-binding ATP-depen 99.6 2.2E-14 4.8E-19 130.2 11.5 154 10-179 310-483 (784)
68 COG1219 ClpX ATP-dependent pro 99.6 1.4E-14 3.1E-19 116.2 8.4 143 13-168 52-236 (408)
69 PRK08058 DNA polymerase III su 99.6 2.7E-14 5.9E-19 118.3 10.5 132 22-170 5-151 (329)
70 COG2255 RuvB Holliday junction 99.6 3.2E-14 6.9E-19 112.7 10.3 125 22-170 26-162 (332)
71 PRK14950 DNA polymerase III su 99.6 7.4E-14 1.6E-18 123.7 13.5 132 22-170 16-161 (585)
72 PRK14971 DNA polymerase III su 99.5 9.9E-14 2.2E-18 123.1 13.4 130 22-170 17-162 (614)
73 PRK14953 DNA polymerase III su 99.5 1.6E-13 3.4E-18 118.8 13.7 130 23-169 17-159 (486)
74 PRK09112 DNA polymerase III su 99.5 1.6E-13 3.5E-18 114.3 12.5 132 22-170 23-182 (351)
75 TIGR02397 dnaX_nterm DNA polym 99.5 3.2E-13 6.9E-18 112.9 13.4 129 23-170 15-158 (355)
76 CHL00195 ycf46 Ycf46; Provisio 99.5 1.6E-13 3.4E-18 118.6 11.2 128 23-170 229-371 (489)
77 PRK14970 DNA polymerase III su 99.5 3.2E-13 7E-18 113.6 12.3 126 22-169 17-148 (367)
78 TIGR03689 pup_AAA proteasome A 99.5 2E-13 4.3E-18 118.1 11.2 154 22-188 182-358 (512)
79 PRK12402 replication factor C 99.5 1.9E-13 4E-18 113.4 10.6 141 7-170 5-166 (337)
80 PRK12377 putative replication 99.5 2E-13 4.4E-18 108.5 10.2 131 26-178 82-215 (248)
81 PHA02544 44 clamp loader, smal 99.5 4.8E-13 1E-17 110.2 12.9 131 7-170 11-142 (316)
82 PRK06871 DNA polymerase III su 99.5 5E-13 1.1E-17 110.0 12.8 128 26-170 6-148 (325)
83 PRK07993 DNA polymerase III su 99.5 3.6E-13 7.7E-18 111.6 11.5 111 50-170 23-149 (334)
84 PRK00440 rfc replication facto 99.5 5.7E-13 1.2E-17 109.6 12.0 138 6-171 6-144 (319)
85 PF00004 AAA: ATPase family as 99.5 2.7E-13 5.9E-18 97.2 8.7 106 54-176 1-118 (132)
86 PRK03992 proteasome-activating 99.5 2.1E-13 4.5E-18 115.4 9.2 134 22-169 131-280 (389)
87 PRK05707 DNA polymerase III su 99.5 5.5E-13 1.2E-17 110.3 11.4 112 50-171 21-148 (328)
88 PRK04195 replication factor C 99.5 4.7E-13 1E-17 116.3 11.2 131 6-171 3-142 (482)
89 PLN00020 ribulose bisphosphate 99.5 8.1E-13 1.8E-17 109.1 11.2 139 48-201 145-313 (413)
90 KOG0730|consensus 99.4 3.2E-13 6.9E-18 117.2 9.0 162 23-202 435-618 (693)
91 PRK08769 DNA polymerase III su 99.4 1.1E-12 2.4E-17 107.7 11.8 131 24-171 6-155 (319)
92 COG0714 MoxR-like ATPases [Gen 99.4 6.4E-14 1.4E-18 116.2 4.4 137 13-168 15-163 (329)
93 TIGR00635 ruvB Holliday juncti 99.4 1E-12 2.2E-17 107.8 11.1 125 22-169 4-139 (305)
94 KOG0733|consensus 99.4 3.4E-13 7.3E-18 116.2 8.5 157 23-200 512-693 (802)
95 KOG0739|consensus 99.4 5.9E-13 1.3E-17 106.3 9.2 132 23-171 134-281 (439)
96 PRK08116 hypothetical protein; 99.4 5.1E-13 1.1E-17 107.6 8.9 129 30-177 96-229 (268)
97 PRK05201 hslU ATP-dependent pr 99.4 1.2E-12 2.5E-17 110.1 11.3 66 11-76 4-75 (443)
98 TIGR00678 holB DNA polymerase 99.4 2.1E-12 4.6E-17 98.8 11.8 110 50-169 13-136 (188)
99 KOG2028|consensus 99.4 3.5E-13 7.7E-18 110.2 7.7 113 23-151 139-251 (554)
100 KOG0733|consensus 99.4 1.8E-12 3.9E-17 111.8 12.2 150 23-190 191-356 (802)
101 PRK05917 DNA polymerase III su 99.4 1.4E-12 3.1E-17 105.4 11.0 109 50-171 18-137 (290)
102 PRK06090 DNA polymerase III su 99.4 4E-12 8.7E-17 104.4 13.1 129 25-170 6-149 (319)
103 TIGR02640 gas_vesic_GvpN gas v 99.4 1.5E-12 3.3E-17 104.7 10.4 126 28-169 4-161 (262)
104 PRK13342 recombination factor 99.4 1.4E-12 3E-17 111.3 10.2 104 23-149 13-119 (413)
105 TIGR00390 hslU ATP-dependent p 99.4 1.4E-12 3E-17 109.6 9.8 64 13-76 3-72 (441)
106 KOG0738|consensus 99.4 2E-12 4.3E-17 106.4 10.1 136 22-171 212-364 (491)
107 PF07726 AAA_3: ATPase family 99.4 1E-13 2.2E-18 98.3 2.2 122 53-190 1-131 (131)
108 PHA02244 ATPase-like protein 99.4 1.9E-12 4.1E-17 107.3 9.8 129 20-168 94-230 (383)
109 TIGR01241 FtsH_fam ATP-depende 99.4 1E-12 2.2E-17 114.6 8.5 131 22-170 55-204 (495)
110 PTZ00454 26S protease regulato 99.4 1.3E-12 2.9E-17 110.5 8.9 133 22-169 145-294 (398)
111 TIGR01243 CDC48 AAA family ATP 99.4 3E-12 6.5E-17 116.5 11.4 132 22-170 453-601 (733)
112 TIGR02974 phageshock_pspF psp 99.4 3.2E-12 6.9E-17 105.9 10.6 131 24-171 1-146 (329)
113 PRK06964 DNA polymerase III su 99.4 2.9E-12 6.4E-17 106.2 10.3 112 49-170 19-173 (342)
114 TIGR01242 26Sp45 26S proteasom 99.4 2.4E-12 5.2E-17 108.2 9.8 134 21-169 121-271 (364)
115 TIGR02902 spore_lonB ATP-depen 99.4 2.3E-12 5E-17 113.0 9.9 121 23-151 66-204 (531)
116 PRK00080 ruvB Holliday junctio 99.4 4.3E-12 9.4E-17 105.2 11.1 125 22-169 25-160 (328)
117 KOG0731|consensus 99.4 1.8E-12 3.9E-17 115.3 9.1 159 22-202 311-498 (774)
118 PF01078 Mg_chelatase: Magnesi 99.4 1.1E-12 2.4E-17 100.7 6.5 137 22-170 3-160 (206)
119 PF01695 IstB_IS21: IstB-like 99.4 9.5E-13 2.1E-17 99.9 6.1 110 51-179 47-160 (178)
120 CHL00176 ftsH cell division pr 99.4 6.2E-12 1.3E-16 111.9 11.4 131 22-170 183-332 (638)
121 TIGR01817 nifA Nif-specific re 99.4 5.6E-12 1.2E-16 110.9 11.0 134 22-172 196-344 (534)
122 KOG0736|consensus 99.4 2.3E-12 4.9E-17 113.6 8.3 147 23-188 673-836 (953)
123 COG2204 AtoC Response regulato 99.3 8.7E-12 1.9E-16 106.2 10.9 138 20-172 139-289 (464)
124 PRK07276 DNA polymerase III su 99.3 1.8E-11 4E-16 99.2 12.1 125 27-170 7-145 (290)
125 PF14532 Sigma54_activ_2: Sigm 99.3 5.1E-12 1.1E-16 92.0 7.9 113 25-172 1-113 (138)
126 PRK15424 propionate catabolism 99.3 8.3E-12 1.8E-16 109.1 10.4 143 23-172 220-376 (538)
127 PRK05818 DNA polymerase III su 99.3 6.6E-12 1.4E-16 99.6 8.6 112 50-171 6-130 (261)
128 COG0464 SpoVK ATPases of the A 99.3 7E-12 1.5E-16 109.4 9.4 132 23-171 243-390 (494)
129 PRK13341 recombination factor 99.3 2.3E-11 4.9E-16 109.7 12.3 107 23-149 29-136 (725)
130 PRK11388 DNA-binding transcrip 99.3 7.7E-12 1.7E-16 112.2 9.1 134 22-172 325-470 (638)
131 PRK07952 DNA replication prote 99.3 8.4E-12 1.8E-16 99.0 8.2 132 26-179 80-215 (244)
132 PRK08939 primosomal protein Dn 99.3 3.7E-11 8.1E-16 98.5 12.3 108 52-177 157-269 (306)
133 PRK08181 transposase; Validate 99.3 8.6E-12 1.9E-16 100.3 8.4 124 53-193 108-235 (269)
134 cd00009 AAA The AAA+ (ATPases 99.3 1.9E-11 4.1E-16 88.3 9.4 127 26-171 2-132 (151)
135 KOG0727|consensus 99.3 7.1E-12 1.5E-16 98.3 7.3 134 23-171 156-306 (408)
136 PTZ00361 26 proteosome regulat 99.3 6.1E-12 1.3E-16 107.4 7.5 134 22-170 183-333 (438)
137 TIGR02329 propionate_PrpR prop 99.3 1.6E-11 3.5E-16 107.3 10.2 138 23-172 213-361 (526)
138 KOG0745|consensus 99.3 1.3E-11 2.9E-16 102.9 9.1 145 13-167 136-364 (564)
139 COG0465 HflB ATP-dependent Zn 99.3 1.1E-11 2.5E-16 108.1 9.1 161 22-201 150-335 (596)
140 TIGR03345 VI_ClpV1 type VI sec 99.3 1.9E-11 4E-16 112.4 10.6 130 22-169 187-326 (852)
141 PRK11608 pspF phage shock prot 99.3 2E-11 4.4E-16 101.1 9.6 134 21-171 5-153 (326)
142 PRK05022 anaerobic nitric oxid 99.3 2.2E-11 4.8E-16 106.6 10.4 132 23-171 188-334 (509)
143 PF07728 AAA_5: AAA domain (dy 99.3 3.6E-12 7.9E-17 92.7 4.2 104 53-170 1-125 (139)
144 PRK06526 transposase; Provisio 99.3 3.2E-11 7E-16 96.4 10.0 108 53-179 100-211 (254)
145 PRK06893 DNA replication initi 99.3 2.5E-11 5.4E-16 95.8 9.0 99 53-175 41-141 (229)
146 TIGR02639 ClpA ATP-dependent C 99.3 2.5E-11 5.5E-16 110.3 10.2 128 22-168 182-320 (731)
147 CHL00081 chlI Mg-protoporyphyr 99.3 1.5E-11 3.3E-16 102.0 8.0 138 22-170 17-198 (350)
148 COG1484 DnaC DNA replication p 99.3 2.1E-11 4.7E-16 97.5 8.4 110 51-178 105-218 (254)
149 COG3829 RocR Transcriptional r 99.3 1E-11 2.2E-16 106.3 6.7 136 22-172 245-394 (560)
150 PRK13407 bchI magnesium chelat 99.3 1.9E-11 4.2E-16 101.0 8.0 140 23-170 9-182 (334)
151 PRK06835 DNA replication prote 99.3 3.9E-11 8.4E-16 99.2 9.7 111 53-178 185-298 (329)
152 KOG0744|consensus 99.2 9.2E-12 2E-16 100.4 5.4 115 53-172 179-310 (423)
153 PRK10865 protein disaggregatio 99.2 3.9E-11 8.5E-16 110.5 10.1 131 22-170 178-318 (857)
154 PRK10820 DNA-binding transcrip 99.2 1.1E-10 2.3E-15 102.4 12.4 136 23-173 205-353 (520)
155 PRK08727 hypothetical protein; 99.2 6.9E-11 1.5E-15 93.5 10.1 131 20-183 18-150 (233)
156 COG3604 FhlA Transcriptional r 99.2 1.8E-11 3.9E-16 103.7 7.1 135 23-172 224-371 (550)
157 COG1221 PspF Transcriptional r 99.2 1.3E-11 2.9E-16 103.4 6.2 142 16-171 72-226 (403)
158 TIGR01243 CDC48 AAA family ATP 99.2 1E-10 2.2E-15 106.6 11.7 131 23-170 179-325 (733)
159 KOG0729|consensus 99.2 4.4E-11 9.6E-16 94.5 7.8 133 23-170 178-327 (435)
160 PRK08699 DNA polymerase III su 99.2 9.8E-11 2.1E-15 96.8 10.3 112 49-170 19-154 (325)
161 PRK11331 5-methylcytosine-spec 99.2 1.7E-10 3.6E-15 98.1 11.7 130 53-190 196-352 (459)
162 PRK08084 DNA replication initi 99.2 7.6E-11 1.7E-15 93.4 9.0 99 53-175 47-147 (235)
163 KOG0726|consensus 99.2 6.8E-11 1.5E-15 94.5 8.4 146 23-187 186-348 (440)
164 KOG0737|consensus 99.2 6.3E-11 1.4E-15 97.1 8.5 163 23-201 93-276 (386)
165 PRK06921 hypothetical protein; 99.2 5.4E-10 1.2E-14 90.0 12.9 103 53-175 119-231 (266)
166 KOG0990|consensus 99.2 4.2E-11 9.1E-16 96.5 6.2 141 7-172 31-174 (360)
167 PRK15429 formate hydrogenlyase 99.2 1.8E-10 4E-15 104.2 10.9 138 23-172 377-524 (686)
168 COG0606 Predicted ATPase with 99.2 2.6E-11 5.7E-16 102.5 4.7 158 22-194 179-376 (490)
169 TIGR03420 DnaA_homol_Hda DnaA 99.2 3.2E-11 7E-16 94.6 4.9 97 51-172 38-136 (226)
170 TIGR01650 PD_CobS cobaltochela 99.1 4.3E-11 9.2E-16 98.1 5.1 126 53-191 66-214 (327)
171 TIGR00368 Mg chelatase-related 99.1 1.4E-10 3E-15 100.7 8.2 161 22-193 192-387 (499)
172 KOG0728|consensus 99.1 2.1E-10 4.5E-15 90.0 8.3 132 24-170 149-297 (404)
173 CHL00095 clpC Clp protease ATP 99.1 2.2E-10 4.8E-15 105.4 9.6 128 23-169 180-317 (821)
174 PRK00411 cdc6 cell division co 99.1 7.2E-10 1.6E-14 94.0 12.0 135 20-169 28-183 (394)
175 KOG2035|consensus 99.1 2.3E-10 5E-15 90.7 8.1 132 24-173 15-171 (351)
176 KOG0735|consensus 99.1 1.6E-10 3.4E-15 101.5 7.8 146 23-189 668-829 (952)
177 TIGR02928 orc1/cdc6 family rep 99.1 6.2E-10 1.3E-14 93.4 11.0 54 20-77 13-66 (365)
178 TIGR03346 chaperone_ClpB ATP-d 99.1 2.3E-10 5E-15 105.6 9.0 129 23-169 174-312 (852)
179 PRK07132 DNA polymerase III su 99.1 1.3E-09 2.9E-14 89.0 12.4 109 50-169 17-130 (299)
180 KOG0742|consensus 99.1 7.3E-10 1.6E-14 92.2 10.9 133 50-202 382-531 (630)
181 TIGR02903 spore_lon_C ATP-depe 99.1 2.8E-10 6.1E-15 101.5 8.8 121 22-150 154-293 (615)
182 TIGR02442 Cob-chelat-sub cobal 99.1 1.6E-10 3.4E-15 103.5 7.2 136 22-170 4-180 (633)
183 KOG0651|consensus 99.1 5.3E-10 1.1E-14 89.9 8.8 133 24-171 134-283 (388)
184 CHL00206 ycf2 Ycf2; Provisiona 99.1 2E-10 4.4E-15 109.8 7.3 127 50-190 1629-1799(2281)
185 PRK14088 dnaA chromosomal repl 99.1 1.2E-09 2.6E-14 93.9 11.1 139 20-176 104-244 (440)
186 PRK10923 glnG nitrogen regulat 99.1 8.6E-10 1.9E-14 95.6 10.2 132 23-171 139-285 (469)
187 PRK08903 DnaA regulatory inact 99.1 1.2E-09 2.6E-14 86.0 10.0 90 53-170 44-133 (227)
188 TIGR02030 BchI-ChlI magnesium 99.1 6.4E-10 1.4E-14 92.2 8.7 141 22-170 4-185 (337)
189 KOG0741|consensus 99.1 2.7E-10 5.8E-15 97.3 6.4 121 53-190 258-396 (744)
190 PRK11034 clpA ATP-dependent Cl 99.1 7E-10 1.5E-14 100.6 9.5 128 23-169 187-325 (758)
191 PRK10733 hflB ATP-dependent me 99.1 5.3E-10 1.2E-14 100.3 8.6 158 23-201 153-337 (644)
192 COG1474 CDC6 Cdc6-related prot 99.1 9.9E-10 2.2E-14 92.1 9.4 140 19-170 14-167 (366)
193 PRK09183 transposase/IS protei 99.1 7.4E-10 1.6E-14 88.9 8.3 106 53-177 104-214 (259)
194 PF06068 TIP49: TIP49 C-termin 99.0 3.7E-09 8E-14 87.4 12.3 53 22-77 24-76 (398)
195 PRK05642 DNA replication initi 99.0 4.1E-10 8.9E-15 89.1 6.3 98 53-175 47-146 (234)
196 smart00350 MCM minichromosome 99.0 1.2E-09 2.5E-14 95.7 9.4 145 13-169 194-353 (509)
197 TIGR00362 DnaA chromosomal rep 99.0 4.6E-10 9.9E-15 95.7 6.7 138 20-175 109-248 (405)
198 PRK14087 dnaA chromosomal repl 99.0 2.3E-09 5E-14 92.4 11.0 137 18-174 112-254 (450)
199 PRK04132 replication factor C 99.0 1.1E-09 2.4E-14 99.8 8.8 101 53-172 566-673 (846)
200 KOG0652|consensus 99.0 3.4E-09 7.3E-14 83.7 10.0 132 23-169 172-320 (424)
201 smart00382 AAA ATPases associa 99.0 3E-09 6.6E-14 75.9 8.8 108 53-168 4-125 (148)
202 PTZ00112 origin recognition co 99.0 3E-09 6.5E-14 96.2 10.5 140 21-169 754-912 (1164)
203 PF05673 DUF815: Protein of un 99.0 9.7E-09 2.1E-13 80.8 12.0 123 22-169 27-151 (249)
204 PRK00149 dnaA chromosomal repl 99.0 1.1E-09 2.5E-14 94.5 7.3 109 53-175 150-260 (450)
205 KOG0743|consensus 99.0 3.8E-09 8.3E-14 88.9 9.8 106 53-186 237-361 (457)
206 PRK12422 chromosomal replicati 99.0 4E-09 8.7E-14 90.7 9.9 107 53-175 143-251 (445)
207 PF13401 AAA_22: AAA domain; P 99.0 2.8E-09 6.1E-14 76.3 7.7 106 53-169 6-126 (131)
208 PRK09862 putative ATP-dependen 99.0 1.8E-09 3.9E-14 93.7 7.5 160 23-193 192-384 (506)
209 PRK14086 dnaA chromosomal repl 98.9 3E-09 6.4E-14 93.8 8.7 109 53-175 316-426 (617)
210 PRK11361 acetoacetate metaboli 98.9 6.5E-09 1.4E-13 89.8 10.8 132 23-171 144-290 (457)
211 TIGR02915 PEP_resp_reg putativ 98.9 6.9E-09 1.5E-13 89.4 10.4 133 23-172 140-287 (445)
212 PF00308 Bac_DnaA: Bacterial d 98.9 3.9E-10 8.6E-15 88.4 2.2 104 53-174 36-145 (219)
213 PRK15115 response regulator Gl 98.9 1E-08 2.2E-13 88.3 11.0 132 23-171 135-281 (444)
214 PF00910 RNA_helicase: RNA hel 98.9 4.3E-09 9.4E-14 73.3 6.6 95 54-168 1-107 (107)
215 COG0542 clpA ATP-binding subun 98.9 8.8E-09 1.9E-13 92.6 10.1 128 23-169 171-309 (786)
216 PTZ00111 DNA replication licen 98.9 5.8E-09 1.3E-13 95.0 9.1 149 13-169 441-610 (915)
217 KOG0732|consensus 98.9 7.8E-09 1.7E-13 94.9 9.0 148 23-186 266-429 (1080)
218 PRK06620 hypothetical protein; 98.9 1E-08 2.2E-13 80.1 8.4 22 53-74 46-67 (214)
219 TIGR01818 ntrC nitrogen regula 98.9 1.7E-08 3.6E-13 87.4 10.1 133 24-172 136-282 (463)
220 KOG0740|consensus 98.8 2.5E-08 5.4E-13 84.2 9.1 101 22-134 153-257 (428)
221 TIGR00602 rad24 checkpoint pro 98.8 4.7E-08 1E-12 87.1 11.2 63 7-77 74-136 (637)
222 TIGR02031 BchD-ChlD magnesium 98.8 5.8E-09 1.3E-13 92.7 5.3 111 53-170 18-138 (589)
223 COG1220 HslU ATP-dependent pro 98.8 2.3E-08 4.9E-13 81.6 8.1 63 13-75 6-74 (444)
224 PRK06581 DNA polymerase III su 98.8 5.9E-08 1.3E-12 76.1 9.7 110 51-170 15-130 (263)
225 PF13173 AAA_14: AAA domain 98.7 8.5E-08 1.8E-12 68.8 8.7 96 53-170 4-100 (128)
226 COG1239 ChlI Mg-chelatase subu 98.7 4.1E-08 8.9E-13 82.2 8.0 149 19-177 14-205 (423)
227 PRK10365 transcriptional regul 98.7 1.1E-07 2.3E-12 81.8 9.7 109 52-171 163-286 (441)
228 PF03969 AFG1_ATPase: AFG1-lik 98.7 8.4E-08 1.8E-12 80.4 8.2 113 50-177 61-176 (362)
229 PF03215 Rad17: Rad17 cell cyc 98.7 2.1E-07 4.6E-12 81.4 10.6 65 5-77 7-71 (519)
230 smart00763 AAA_PrkA PrkA AAA d 98.6 6.4E-08 1.4E-12 80.4 6.6 54 22-77 51-104 (361)
231 TIGR03015 pepcterm_ATPase puta 98.6 5.6E-07 1.2E-11 72.3 11.7 92 53-147 45-148 (269)
232 KOG0730|consensus 98.6 8.4E-08 1.8E-12 84.0 6.9 157 24-201 186-366 (693)
233 COG3283 TyrR Transcriptional r 98.6 2.7E-07 5.9E-12 76.0 9.4 136 22-170 204-345 (511)
234 PRK09087 hypothetical protein; 98.6 1.3E-07 2.8E-12 74.5 6.7 88 53-175 46-133 (226)
235 KOG0741|consensus 98.6 1.1E-06 2.3E-11 75.7 12.3 106 49-172 535-653 (744)
236 COG1224 TIP49 DNA helicase TIP 98.6 2.4E-07 5.3E-12 76.1 7.9 66 21-95 38-103 (450)
237 TIGR02688 conserved hypothetic 98.6 6.5E-07 1.4E-11 75.8 10.6 96 53-169 211-313 (449)
238 PHA02774 E1; Provisional 98.5 1.9E-07 4E-12 81.7 6.6 140 33-201 419-579 (613)
239 COG4650 RtcR Sigma54-dependent 98.5 2.3E-07 5.1E-12 74.7 6.4 126 19-151 181-311 (531)
240 PRK04296 thymidine kinase; Pro 98.5 1.1E-06 2.4E-11 67.3 9.2 25 53-77 4-28 (190)
241 PF05621 TniB: Bacterial TniB 98.5 2.9E-06 6.3E-11 68.9 11.5 116 14-134 26-157 (302)
242 COG1618 Predicted nucleotide k 98.5 1.2E-06 2.5E-11 64.6 8.4 28 50-77 4-31 (179)
243 KOG1969|consensus 98.5 7.4E-07 1.6E-11 79.1 8.7 83 53-148 328-413 (877)
244 PRK14974 cell division protein 98.5 1.2E-05 2.5E-10 66.9 15.3 28 50-77 139-166 (336)
245 COG0593 DnaA ATPase involved i 98.4 1.6E-06 3.4E-11 73.3 10.0 114 53-185 115-234 (408)
246 COG2607 Predicted ATPase (AAA+ 98.4 1.8E-06 3.8E-11 67.6 9.2 122 23-169 61-184 (287)
247 PRK12723 flagellar biosynthesi 98.4 1.8E-05 3.9E-10 67.0 15.9 119 50-177 173-306 (388)
248 PF01637 Arch_ATPase: Archaeal 98.4 1.2E-06 2.7E-11 68.2 8.0 46 24-77 1-46 (234)
249 PRK15455 PrkA family serine pr 98.4 5.5E-07 1.2E-11 78.8 6.3 53 22-76 76-128 (644)
250 COG1485 Predicted ATPase [Gene 98.4 1.3E-06 2.9E-11 71.8 8.0 123 51-199 65-196 (367)
251 PF00448 SRP54: SRP54-type pro 98.4 8E-06 1.7E-10 62.9 11.8 114 51-174 1-131 (196)
252 PF00931 NB-ARC: NB-ARC domain 98.4 9.2E-07 2E-11 71.6 6.3 40 29-74 3-42 (287)
253 cd01120 RecA-like_NTPases RecA 98.4 1.5E-06 3.3E-11 63.9 6.9 24 54-77 2-25 (165)
254 cd00561 CobA_CobO_BtuR ATP:cor 98.3 5.9E-06 1.3E-10 61.4 9.7 56 113-175 86-144 (159)
255 COG3284 AcoR Transcriptional a 98.3 4.5E-07 9.9E-12 79.3 4.2 131 25-171 316-459 (606)
256 KOG1970|consensus 98.3 6.6E-06 1.4E-10 71.1 11.0 52 24-77 84-136 (634)
257 PHA00729 NTP-binding motif con 98.3 1.2E-05 2.6E-10 63.0 11.4 26 51-76 17-42 (226)
258 PRK11889 flhF flagellar biosyn 98.3 2.2E-05 4.7E-10 66.3 13.4 138 27-175 216-369 (436)
259 PRK10536 hypothetical protein; 98.3 1E-05 2.2E-10 64.5 10.8 25 124-148 178-202 (262)
260 PF00493 MCM: MCM2/3/5 family 98.3 1E-07 2.3E-12 79.2 -0.5 150 12-170 14-175 (331)
261 PF13671 AAA_33: AAA domain; P 98.3 5.6E-06 1.2E-10 60.0 8.5 22 54-75 2-23 (143)
262 PF13604 AAA_30: AAA domain; P 98.3 6.8E-06 1.5E-10 63.3 9.0 26 123-148 94-119 (196)
263 TIGR00764 lon_rel lon-related 98.2 2E-06 4.3E-11 76.9 5.1 52 16-77 12-63 (608)
264 PRK13406 bchD magnesium chelat 98.2 2.9E-06 6.2E-11 75.4 6.0 127 53-193 27-165 (584)
265 TIGR00064 ftsY signal recognit 98.2 0.0002 4.3E-09 58.0 16.1 51 27-77 43-98 (272)
266 PF02562 PhoH: PhoH-like prote 98.2 6.1E-06 1.3E-10 63.8 6.9 25 53-77 21-45 (205)
267 PRK12724 flagellar biosynthesi 98.2 0.00012 2.7E-09 62.3 15.2 118 50-177 222-353 (432)
268 PF05729 NACHT: NACHT domain 98.2 1.6E-05 3.4E-10 58.7 8.8 25 53-77 2-26 (166)
269 PF09848 DUF2075: Uncharacteri 98.2 8.5E-06 1.8E-10 68.4 8.0 23 53-75 3-25 (352)
270 PF03266 NTPase_1: NTPase; In 98.2 3.7E-06 7.9E-11 63.2 5.2 24 53-76 1-24 (168)
271 PRK00771 signal recognition pa 98.1 8.6E-05 1.9E-09 63.9 13.7 49 29-77 69-121 (437)
272 KOG0477|consensus 98.1 4.2E-06 9E-11 73.3 5.5 143 16-168 443-598 (854)
273 PRK05703 flhF flagellar biosyn 98.1 0.00015 3.2E-09 62.3 15.0 136 30-177 198-351 (424)
274 TIGR01425 SRP54_euk signal rec 98.1 0.00022 4.8E-09 61.1 15.6 28 50-77 99-126 (429)
275 COG5271 MDN1 AAA ATPase contai 98.1 1.5E-05 3.3E-10 76.6 9.1 122 53-190 890-1028(4600)
276 PF12775 AAA_7: P-loop contain 98.1 1.2E-05 2.7E-10 65.0 7.5 103 53-169 35-158 (272)
277 KOG0478|consensus 98.1 5.7E-06 1.2E-10 73.1 5.3 147 13-169 420-579 (804)
278 COG4088 Predicted nucleotide k 98.1 7.1E-05 1.5E-09 57.6 10.5 24 54-77 4-27 (261)
279 PF13191 AAA_16: AAA ATPase do 98.1 4.9E-06 1.1E-10 62.8 4.2 49 24-77 2-50 (185)
280 KOG1942|consensus 98.1 1.4E-05 3.1E-10 64.5 6.9 56 19-77 35-90 (456)
281 COG0552 FtsY Signal recognitio 98.0 0.00028 6.1E-09 58.0 14.3 114 49-175 137-276 (340)
282 COG1241 MCM2 Predicted ATPase 98.0 5.5E-06 1.2E-10 74.2 4.9 125 14-152 278-413 (682)
283 PRK10867 signal recognition pa 98.0 0.00054 1.2E-08 58.9 16.5 48 30-77 74-126 (433)
284 cd01124 KaiC KaiC is a circadi 98.0 3.3E-05 7.1E-10 58.5 8.3 24 54-77 2-25 (187)
285 TIGR01618 phage_P_loop phage n 98.0 7.2E-06 1.6E-10 64.2 4.6 24 50-73 11-34 (220)
286 PRK13765 ATP-dependent proteas 98.0 5.5E-06 1.2E-10 74.2 4.3 50 18-77 27-76 (637)
287 COG0529 CysC Adenylylsulfate k 98.0 7.5E-05 1.6E-09 56.0 9.6 29 49-77 21-49 (197)
288 KOG0735|consensus 98.0 3.6E-05 7.9E-10 68.6 9.1 74 53-134 433-506 (952)
289 PF12780 AAA_8: P-loop contain 98.0 0.00014 2.9E-09 58.8 11.7 109 24-151 10-118 (268)
290 PF05970 PIF1: PIF1-like helic 98.0 4E-05 8.6E-10 64.6 8.8 43 27-77 6-48 (364)
291 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00011 2.4E-09 58.0 10.8 76 53-147 34-109 (231)
292 PRK10416 signal recognition pa 98.0 0.00043 9.4E-09 57.3 14.6 50 28-77 86-140 (318)
293 PF13207 AAA_17: AAA domain; P 98.0 6.9E-06 1.5E-10 57.9 3.4 24 53-76 1-24 (121)
294 KOG0480|consensus 97.9 4.1E-05 8.8E-10 67.4 8.1 127 13-151 336-471 (764)
295 KOG0736|consensus 97.9 8.9E-05 1.9E-09 66.6 10.4 162 24-199 403-576 (953)
296 TIGR00708 cobA cob(I)alamin ad 97.9 0.00017 3.6E-09 54.3 10.3 54 113-176 88-147 (173)
297 KOG1514|consensus 97.9 5.8E-05 1.2E-09 67.1 8.9 142 21-169 395-551 (767)
298 TIGR00959 ffh signal recogniti 97.9 0.001 2.2E-08 57.3 16.3 27 50-76 98-124 (428)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 6.1E-05 1.3E-09 55.1 7.8 96 53-169 28-127 (144)
300 cd01131 PilT Pilus retraction 97.9 8.8E-05 1.9E-09 57.2 8.5 25 53-77 3-27 (198)
301 PRK05986 cob(I)alamin adenolsy 97.9 0.00014 3E-09 55.5 9.3 114 53-176 24-165 (191)
302 PF01583 APS_kinase: Adenylyls 97.9 4.3E-05 9.2E-10 56.6 6.2 28 50-77 1-28 (156)
303 PRK14527 adenylate kinase; Pro 97.9 0.00054 1.2E-08 52.4 12.4 26 50-75 5-30 (191)
304 PRK14722 flhF flagellar biosyn 97.9 0.00017 3.7E-09 60.7 10.3 26 51-76 137-162 (374)
305 PF08298 AAA_PrkA: PrkA AAA do 97.8 4.2E-05 9.1E-10 63.4 6.3 53 21-75 60-112 (358)
306 PLN03210 Resistant to P. syrin 97.8 0.00025 5.5E-09 68.2 12.0 49 23-77 185-233 (1153)
307 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00012 2.6E-09 55.5 7.9 87 53-148 27-116 (177)
308 cd03281 ABC_MSH5_euk MutS5 hom 97.8 0.00026 5.7E-09 55.2 10.1 23 52-74 30-52 (213)
309 TIGR02768 TraA_Ti Ti-type conj 97.8 0.0001 2.2E-09 67.6 8.2 89 53-147 370-464 (744)
310 PRK00131 aroK shikimate kinase 97.8 2.7E-05 5.9E-10 58.2 3.8 26 50-75 3-28 (175)
311 PRK12726 flagellar biosynthesi 97.8 0.00092 2E-08 56.4 13.0 27 51-77 206-232 (407)
312 PRK12727 flagellar biosynthesi 97.8 0.0011 2.4E-08 58.2 13.8 26 52-77 351-376 (559)
313 PF07693 KAP_NTPase: KAP famil 97.7 0.00079 1.7E-08 55.5 12.6 42 35-77 5-46 (325)
314 PRK06067 flagellar accessory p 97.7 0.00026 5.6E-09 55.9 9.3 24 52-75 26-49 (234)
315 TIGR01448 recD_rel helicase, p 97.7 0.00019 4.2E-09 65.6 9.5 94 53-149 340-443 (720)
316 TIGR00150 HI0065_YjeE ATPase, 97.7 9.7E-05 2.1E-09 53.3 5.9 43 29-77 6-48 (133)
317 cd02021 GntK Gluconate kinase 97.7 0.00076 1.7E-08 49.3 10.9 22 54-75 2-23 (150)
318 PRK06696 uridine kinase; Valid 97.7 8.1E-05 1.8E-09 58.4 5.9 29 49-77 20-48 (223)
319 cd01121 Sms Sms (bacterial rad 97.7 0.00013 2.7E-09 61.7 7.0 25 53-77 84-108 (372)
320 cd01128 rho_factor Transcripti 97.7 8.1E-05 1.8E-09 59.5 5.6 25 53-77 18-42 (249)
321 PF01443 Viral_helicase1: Vira 97.7 9.3E-05 2E-09 58.0 5.9 87 54-147 1-87 (234)
322 cd03216 ABC_Carb_Monos_I This 97.7 0.00032 6.9E-09 52.3 8.3 102 53-169 28-142 (163)
323 TIGR02237 recomb_radB DNA repa 97.7 0.00032 7E-09 54.2 8.6 26 52-77 13-38 (209)
324 cd03115 SRP The signal recogni 97.7 0.001 2.3E-08 49.8 11.1 25 53-77 2-26 (173)
325 PF05272 VirE: Virulence-assoc 97.7 0.00027 5.8E-09 54.5 7.9 108 32-169 35-150 (198)
326 KOG2227|consensus 97.7 0.00016 3.5E-09 61.7 7.1 137 22-169 150-299 (529)
327 PF13238 AAA_18: AAA domain; P 97.7 4.3E-05 9.3E-10 54.0 3.2 22 54-75 1-22 (129)
328 PRK08118 topology modulation p 97.6 4.3E-05 9.4E-10 57.3 3.3 25 53-77 3-27 (167)
329 PRK06762 hypothetical protein; 97.6 5.6E-05 1.2E-09 56.4 3.8 25 51-75 2-26 (166)
330 PRK08533 flagellar accessory p 97.6 0.00064 1.4E-08 53.7 10.0 24 53-76 26-49 (230)
331 PF13245 AAA_19: Part of AAA d 97.6 0.0001 2.2E-09 48.0 4.3 24 53-76 12-35 (76)
332 TIGR01420 pilT_fam pilus retra 97.6 0.00044 9.6E-09 57.8 9.2 25 53-77 124-148 (343)
333 TIGR02012 tigrfam_recA protein 97.6 0.00036 7.9E-09 57.6 8.4 25 53-77 57-81 (321)
334 COG3854 SpoIIIAA ncharacterize 97.6 0.00032 7E-09 55.0 7.6 97 50-149 136-243 (308)
335 PRK04220 2-phosphoglycerate ki 97.6 0.00016 3.6E-09 59.0 6.2 29 49-77 90-118 (301)
336 COG1116 TauB ABC-type nitrate/ 97.6 0.00029 6.3E-09 55.7 7.3 25 53-77 31-55 (248)
337 PF06048 DUF927: Domain of unk 97.6 0.0012 2.5E-08 53.9 11.2 115 12-149 155-269 (286)
338 PRK05541 adenylylsulfate kinas 97.6 7.3E-05 1.6E-09 56.3 3.9 28 50-77 6-33 (176)
339 PRK05439 pantothenate kinase; 97.6 0.00019 4.2E-09 59.0 6.6 29 48-76 83-111 (311)
340 PRK13889 conjugal transfer rel 97.6 0.00047 1E-08 64.7 9.8 27 122-148 433-459 (988)
341 cd03223 ABCD_peroxisomal_ALDP 97.6 0.0005 1.1E-08 51.4 8.4 101 53-168 29-147 (166)
342 PRK08233 hypothetical protein; 97.6 7.1E-05 1.5E-09 56.4 3.8 27 50-76 2-28 (182)
343 PRK13695 putative NTPase; Prov 97.6 0.00043 9.4E-09 52.1 8.0 24 53-76 2-25 (174)
344 TIGR00554 panK_bact pantothena 97.6 0.00019 4.1E-09 58.5 6.4 29 48-76 59-87 (290)
345 cd03247 ABCC_cytochrome_bd The 97.6 0.00047 1E-08 52.1 8.2 106 53-169 30-157 (178)
346 PF13086 AAA_11: AAA domain; P 97.6 8.2E-05 1.8E-09 57.9 4.2 23 53-75 19-41 (236)
347 cd02019 NK Nucleoside/nucleoti 97.6 8.2E-05 1.8E-09 47.4 3.4 22 54-75 2-23 (69)
348 cd03228 ABCC_MRP_Like The MRP 97.6 0.00057 1.2E-08 51.3 8.5 108 53-170 30-156 (171)
349 PRK09270 nucleoside triphospha 97.6 0.00024 5.1E-09 56.0 6.6 43 32-77 17-59 (229)
350 PRK05480 uridine/cytidine kina 97.6 9.4E-05 2E-09 57.4 4.2 27 49-75 4-30 (209)
351 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00054 1.2E-08 50.6 8.0 105 53-169 27-140 (157)
352 PRK03846 adenylylsulfate kinas 97.6 0.0024 5.3E-08 49.1 12.0 28 50-77 23-50 (198)
353 COG3267 ExeA Type II secretory 97.6 0.00071 1.5E-08 53.7 8.9 95 53-147 53-156 (269)
354 PRK11823 DNA repair protein Ra 97.6 0.00022 4.8E-09 61.7 6.7 24 53-76 82-105 (446)
355 COG1373 Predicted ATPase (AAA+ 97.5 0.00038 8.3E-09 59.4 8.1 83 53-150 39-121 (398)
356 PRK03839 putative kinase; Prov 97.5 7.5E-05 1.6E-09 56.5 3.3 24 53-76 2-25 (180)
357 PF13479 AAA_24: AAA domain 97.5 7.5E-05 1.6E-09 58.2 3.4 25 50-74 2-26 (213)
358 PRK09435 membrane ATPase/prote 97.5 0.0022 4.8E-08 53.3 12.2 29 49-77 54-82 (332)
359 cd03214 ABC_Iron-Siderophores_ 97.5 0.0009 2E-08 50.6 9.1 25 53-77 27-51 (180)
360 PRK06995 flhF flagellar biosyn 97.5 0.0025 5.4E-08 55.5 12.8 27 50-76 255-281 (484)
361 PF06414 Zeta_toxin: Zeta toxi 97.5 0.0023 5E-08 49.3 11.5 27 49-75 13-39 (199)
362 PRK06547 hypothetical protein; 97.5 0.00011 2.5E-09 55.4 4.1 26 50-75 14-39 (172)
363 COG1419 FlhF Flagellar GTP-bin 97.5 0.0021 4.5E-08 54.4 11.8 51 123-179 282-334 (407)
364 TIGR03499 FlhF flagellar biosy 97.5 0.00053 1.2E-08 55.8 8.2 50 28-77 167-220 (282)
365 TIGR01447 recD exodeoxyribonuc 97.5 0.00097 2.1E-08 59.6 10.5 28 122-149 259-286 (586)
366 PRK09361 radB DNA repair and r 97.5 0.00059 1.3E-08 53.5 8.2 27 51-77 23-49 (225)
367 cd03243 ABC_MutS_homologs The 97.5 0.00092 2E-08 51.6 9.1 23 53-75 31-53 (202)
368 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00091 2E-08 53.8 9.4 23 53-75 38-60 (259)
369 KOG0922|consensus 97.5 0.0009 1.9E-08 59.3 9.9 51 121-178 162-215 (674)
370 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 8.5E-05 1.8E-09 56.2 3.3 22 54-75 2-23 (183)
371 PTZ00202 tuzin; Provisional 97.5 0.00072 1.6E-08 58.0 8.9 48 23-75 263-310 (550)
372 PLN02200 adenylate kinase fami 97.5 0.00012 2.7E-09 57.9 4.1 27 49-75 41-67 (234)
373 KOG2383|consensus 97.5 0.00029 6.4E-09 59.1 6.4 119 49-178 112-243 (467)
374 PF10662 PduV-EutP: Ethanolami 97.5 0.0012 2.6E-08 48.1 8.9 21 54-74 4-24 (143)
375 COG4178 ABC-type uncharacteriz 97.5 0.00037 8E-09 61.8 7.3 40 123-169 534-574 (604)
376 PF00437 T2SE: Type II/IV secr 97.5 0.00039 8.5E-09 56.0 7.1 88 53-149 129-221 (270)
377 cd03246 ABCC_Protease_Secretio 97.5 0.00074 1.6E-08 50.8 8.1 25 53-77 30-54 (173)
378 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.0013 2.7E-08 51.1 9.5 22 53-74 31-52 (204)
379 cd00983 recA RecA is a bacter 97.5 0.00084 1.8E-08 55.6 8.9 25 53-77 57-81 (325)
380 TIGR01313 therm_gnt_kin carboh 97.5 8E-05 1.7E-09 55.3 2.7 22 54-75 1-22 (163)
381 PF08433 KTI12: Chromatin asso 97.5 0.00045 9.7E-09 55.9 7.1 24 54-77 4-27 (270)
382 PRK07261 topology modulation p 97.5 0.00011 2.3E-09 55.4 3.3 22 54-75 3-24 (171)
383 PRK14723 flhF flagellar biosyn 97.5 0.0077 1.7E-07 55.2 15.5 25 51-75 185-209 (767)
384 TIGR02858 spore_III_AA stage I 97.5 0.00049 1.1E-08 55.6 7.1 26 52-77 112-137 (270)
385 cd00464 SK Shikimate kinase (S 97.4 0.00012 2.7E-09 53.6 3.4 22 54-75 2-23 (154)
386 cd03283 ABC_MutS-like MutS-lik 97.4 0.0018 3.8E-08 50.0 9.9 23 53-75 27-49 (199)
387 TIGR00767 rho transcription te 97.4 0.00045 9.7E-09 58.6 7.0 25 53-77 170-194 (415)
388 COG0563 Adk Adenylate kinase a 97.4 0.00013 2.7E-09 55.4 3.3 22 54-75 3-24 (178)
389 PRK06731 flhF flagellar biosyn 97.4 0.0031 6.8E-08 51.0 11.5 113 52-176 76-204 (270)
390 PRK14532 adenylate kinase; Pro 97.4 0.00012 2.7E-09 55.7 3.2 23 53-75 2-24 (188)
391 cd00227 CPT Chloramphenicol (C 97.4 0.00016 3.5E-09 54.5 3.7 24 53-76 4-27 (175)
392 PRK10875 recD exonuclease V su 97.4 0.0011 2.4E-08 59.5 9.5 27 123-149 266-292 (615)
393 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00014 3.1E-09 55.1 3.3 23 53-75 5-27 (188)
394 PTZ00088 adenylate kinase 1; P 97.4 0.00017 3.7E-09 56.9 3.8 26 50-75 5-30 (229)
395 PHA02624 large T antigen; Prov 97.4 0.00034 7.3E-09 62.0 6.0 26 52-77 432-457 (647)
396 PRK13947 shikimate kinase; Pro 97.4 0.00016 3.5E-09 54.1 3.5 24 53-76 3-26 (171)
397 COG5271 MDN1 AAA ATPase contai 97.4 0.00043 9.4E-09 67.3 6.8 89 53-150 1545-1639(4600)
398 PHA01747 putative ATP-dependen 97.4 0.0011 2.5E-08 55.2 8.6 103 48-169 187-301 (425)
399 PRK13826 Dtr system oriT relax 97.4 0.00095 2.1E-08 63.2 9.1 88 53-148 399-494 (1102)
400 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0039 8.5E-08 50.3 11.6 25 53-77 82-106 (264)
401 smart00534 MUTSac ATPase domai 97.4 0.0022 4.8E-08 48.8 9.7 21 54-74 2-22 (185)
402 TIGR01967 DEAH_box_HrpA ATP-de 97.4 0.0016 3.6E-08 62.5 10.7 17 53-69 84-100 (1283)
403 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.0024 5.2E-08 49.2 9.9 21 53-73 30-50 (200)
404 smart00487 DEXDc DEAD-like hel 97.4 0.00053 1.1E-08 51.4 6.2 23 53-75 26-49 (201)
405 PRK04040 adenylate kinase; Pro 97.4 0.00019 4E-09 55.0 3.7 25 51-75 2-26 (188)
406 TIGR02525 plasmid_TraJ plasmid 97.4 0.0013 2.9E-08 55.5 9.1 25 53-77 151-175 (372)
407 TIGR00235 udk uridine kinase. 97.4 0.00022 4.9E-09 55.2 4.1 27 50-76 5-31 (207)
408 PRK12337 2-phosphoglycerate ki 97.4 0.00077 1.7E-08 58.1 7.5 28 49-76 253-280 (475)
409 PRK14738 gmk guanylate kinase; 97.4 0.00021 4.7E-09 55.4 3.9 27 48-74 10-36 (206)
410 PRK14531 adenylate kinase; Pro 97.4 0.00018 3.9E-09 54.7 3.4 23 53-75 4-26 (183)
411 PRK00625 shikimate kinase; Pro 97.4 0.00019 4E-09 54.3 3.4 24 53-76 2-25 (173)
412 TIGR00455 apsK adenylylsulfate 97.3 0.0051 1.1E-07 46.6 11.3 28 50-77 17-44 (184)
413 PRK14530 adenylate kinase; Pro 97.3 0.00018 3.9E-09 56.1 3.4 24 53-76 5-28 (215)
414 cd03230 ABC_DR_subfamily_A Thi 97.3 0.00091 2E-08 50.3 7.1 24 53-76 28-51 (173)
415 PRK00091 miaA tRNA delta(2)-is 97.3 0.0009 2E-08 55.1 7.4 27 50-76 3-29 (307)
416 KOG0479|consensus 97.3 0.0014 3.1E-08 57.5 8.8 146 13-168 292-450 (818)
417 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0022 4.8E-08 47.7 8.9 27 51-77 21-47 (162)
418 PF06745 KaiC: KaiC; InterPro 97.3 0.00042 9E-09 54.4 5.1 24 52-75 20-43 (226)
419 PRK06217 hypothetical protein; 97.3 0.0002 4.4E-09 54.4 3.2 24 53-76 3-26 (183)
420 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0017 3.6E-08 51.5 8.5 23 52-74 22-44 (237)
421 PRK09354 recA recombinase A; P 97.3 0.0018 3.9E-08 54.1 8.9 24 53-76 62-85 (349)
422 PRK07667 uridine kinase; Provi 97.3 0.00042 9.1E-09 53.2 4.9 28 50-77 16-43 (193)
423 PRK02496 adk adenylate kinase; 97.3 0.00023 5E-09 54.0 3.3 23 53-75 3-25 (184)
424 cd01428 ADK Adenylate kinase ( 97.3 0.00022 4.7E-09 54.3 3.2 22 54-75 2-23 (194)
425 PRK08154 anaerobic benzoate ca 97.3 0.00071 1.5E-08 55.8 6.4 27 50-76 132-158 (309)
426 TIGR02322 phosphon_PhnN phosph 97.3 0.00023 4.9E-09 53.7 3.2 24 53-76 3-26 (179)
427 PRK00889 adenylylsulfate kinas 97.3 0.00035 7.6E-09 52.6 4.3 28 50-77 3-30 (175)
428 cd02020 CMPK Cytidine monophos 97.3 0.00025 5.4E-09 51.4 3.3 22 54-75 2-23 (147)
429 PRK11131 ATP-dependent RNA hel 97.3 0.003 6.6E-08 60.7 11.2 16 53-68 91-106 (1294)
430 COG2804 PulE Type II secretory 97.3 0.0013 2.8E-08 57.0 8.0 28 50-77 256-284 (500)
431 PRK13949 shikimate kinase; Pro 97.3 0.00024 5.2E-09 53.4 3.3 25 53-77 3-27 (169)
432 COG1643 HrpA HrpA-like helicas 97.3 0.0023 4.9E-08 59.1 10.1 52 121-178 161-215 (845)
433 cd00544 CobU Adenosylcobinamid 97.3 0.00084 1.8E-08 50.5 6.2 21 54-74 2-22 (169)
434 PHA02530 pseT polynucleotide k 97.3 0.00026 5.6E-09 57.9 3.6 24 52-75 3-26 (300)
435 PRK12338 hypothetical protein; 97.3 0.00031 6.7E-09 57.9 4.0 27 50-76 3-29 (319)
436 PF13555 AAA_29: P-loop contai 97.3 0.00042 9.2E-09 43.1 3.7 25 53-77 25-49 (62)
437 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.002 4.3E-08 50.5 8.5 24 53-76 18-41 (224)
438 PF02367 UPF0079: Uncharacteri 97.3 0.0006 1.3E-08 48.5 4.9 25 53-77 17-41 (123)
439 PRK14721 flhF flagellar biosyn 97.3 0.0077 1.7E-07 51.7 12.4 25 51-75 191-215 (420)
440 PRK12608 transcription termina 97.2 0.0049 1.1E-07 51.9 10.9 25 53-77 135-159 (380)
441 COG2805 PilT Tfp pilus assembl 97.2 0.00076 1.6E-08 54.8 5.9 24 54-77 128-151 (353)
442 PF04851 ResIII: Type III rest 97.2 0.00078 1.7E-08 50.3 5.7 45 26-77 7-51 (184)
443 PRK14737 gmk guanylate kinase; 97.2 0.00032 6.9E-09 53.6 3.6 26 50-75 3-28 (186)
444 PRK10646 ADP-binding protein; 97.2 0.00086 1.9E-08 49.5 5.7 45 27-77 10-54 (153)
445 COG4098 comFA Superfamily II D 97.2 0.00031 6.7E-09 57.9 3.6 43 25-77 100-142 (441)
446 COG1102 Cmk Cytidylate kinase 97.2 0.00028 6.1E-09 52.2 3.0 24 53-76 2-25 (179)
447 PRK09376 rho transcription ter 97.2 0.00069 1.5E-08 57.3 5.7 24 54-77 172-195 (416)
448 PF00485 PRK: Phosphoribulokin 97.2 0.00031 6.7E-09 53.9 3.4 24 54-77 2-25 (194)
449 PLN02840 tRNA dimethylallyltra 97.2 0.0014 3.1E-08 56.0 7.6 27 50-76 20-46 (421)
450 cd03239 ABC_SMC_head The struc 97.2 0.0049 1.1E-07 46.7 9.9 25 53-77 24-48 (178)
451 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0003 6.4E-09 56.1 3.4 24 54-77 2-25 (249)
452 TIGR01613 primase_Cterm phage/ 97.2 0.0058 1.2E-07 50.3 11.0 59 15-75 42-100 (304)
453 TIGR00416 sms DNA repair prote 97.2 0.0011 2.4E-08 57.5 7.0 25 53-77 96-120 (454)
454 COG0541 Ffh Signal recognition 97.2 0.018 3.9E-07 49.2 13.9 135 28-173 72-229 (451)
455 COG4608 AppF ABC-type oligopep 97.2 0.0014 3E-08 52.5 6.9 25 53-77 41-65 (268)
456 KOG3347|consensus 97.2 0.00031 6.6E-09 51.3 2.9 23 53-75 9-31 (176)
457 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.0044 9.5E-08 48.7 9.6 21 53-73 33-53 (222)
458 cd02027 APSK Adenosine 5'-phos 97.2 0.00039 8.4E-09 51.1 3.4 24 54-77 2-25 (149)
459 PRK14528 adenylate kinase; Pro 97.2 0.00037 7.9E-09 53.2 3.4 23 53-75 3-25 (186)
460 TIGR01351 adk adenylate kinase 97.2 0.00036 7.7E-09 54.2 3.2 22 54-75 2-23 (210)
461 TIGR00643 recG ATP-dependent D 97.2 0.0035 7.6E-08 56.7 10.0 25 123-147 358-382 (630)
462 PRK10078 ribose 1,5-bisphospho 97.2 0.00029 6.4E-09 53.6 2.7 23 53-75 4-26 (186)
463 COG1072 CoaA Panthothenate kin 97.2 0.0015 3.3E-08 52.3 6.8 67 10-77 39-108 (283)
464 PRK00279 adk adenylate kinase; 97.1 0.00039 8.5E-09 54.2 3.4 23 54-76 3-25 (215)
465 PRK12339 2-phosphoglycerate ki 97.1 0.00048 1E-08 53.1 3.8 26 50-75 2-27 (197)
466 cd02023 UMPK Uridine monophosp 97.1 0.00041 8.9E-09 53.3 3.4 22 54-75 2-23 (198)
467 PF13521 AAA_28: AAA domain; P 97.1 0.00038 8.2E-09 51.8 3.1 21 54-74 2-22 (163)
468 PRK00300 gmk guanylate kinase; 97.1 0.00046 9.9E-09 53.2 3.6 24 52-75 6-29 (205)
469 KOG3354|consensus 97.1 0.011 2.5E-07 43.6 10.4 25 53-77 14-38 (191)
470 cd01130 VirB11-like_ATPase Typ 97.1 0.001 2.3E-08 50.6 5.4 25 53-77 27-51 (186)
471 KOG0482|consensus 97.1 0.0013 2.9E-08 56.9 6.4 131 13-151 333-468 (721)
472 PRK05057 aroK shikimate kinase 97.1 0.00054 1.2E-08 51.6 3.7 23 53-75 6-28 (172)
473 PF01591 6PF2K: 6-phosphofruct 97.1 0.016 3.4E-07 45.5 11.9 119 50-179 11-144 (222)
474 KOG2228|consensus 97.1 0.012 2.5E-07 48.8 11.4 57 11-71 6-69 (408)
475 PRK05537 bifunctional sulfate 97.1 0.0025 5.4E-08 56.9 8.2 64 8-77 350-418 (568)
476 cd03284 ABC_MutS1 MutS1 homolo 97.1 0.0058 1.2E-07 47.8 9.4 22 53-74 32-53 (216)
477 PRK13975 thymidylate kinase; P 97.1 0.00059 1.3E-08 52.1 3.8 25 53-77 4-28 (196)
478 PLN02459 probable adenylate ki 97.1 0.0006 1.3E-08 54.7 3.9 26 50-75 28-53 (261)
479 PRK04328 hypothetical protein; 97.1 0.003 6.4E-08 50.5 7.9 22 53-74 25-46 (249)
480 PRK13946 shikimate kinase; Pro 97.1 0.00057 1.2E-08 52.0 3.5 25 52-76 11-35 (184)
481 cd00071 GMPK Guanosine monopho 97.1 0.00049 1.1E-08 49.9 3.0 22 54-75 2-23 (137)
482 PRK13764 ATPase; Provisional 97.1 0.0036 7.8E-08 55.9 9.0 25 53-77 259-283 (602)
483 COG1061 SSL2 DNA or RNA helica 97.1 0.0023 5E-08 55.4 7.6 24 54-77 58-81 (442)
484 PF01057 Parvo_NS1: Parvovirus 97.1 0.00062 1.3E-08 55.0 3.7 88 53-168 115-208 (271)
485 COG2274 SunT ABC-type bacterio 97.1 0.0019 4.1E-08 58.9 7.3 24 54-77 502-525 (709)
486 PF04665 Pox_A32: Poxvirus A32 97.1 0.01 2.2E-07 47.1 10.6 27 50-76 12-38 (241)
487 PRK14526 adenylate kinase; Pro 97.1 0.00055 1.2E-08 53.4 3.3 22 54-75 3-24 (211)
488 TIGR03263 guanyl_kin guanylate 97.1 0.00045 9.6E-09 52.1 2.8 23 53-75 3-25 (180)
489 PLN02748 tRNA dimethylallyltra 97.0 0.0026 5.6E-08 55.2 7.7 27 50-76 21-47 (468)
490 PTZ00301 uridine kinase; Provi 97.0 0.00067 1.5E-08 52.8 3.8 24 53-76 5-28 (210)
491 PLN02674 adenylate kinase 97.0 0.0013 2.8E-08 52.4 5.3 24 52-75 32-55 (244)
492 TIGR02868 CydC thiol reductant 97.0 0.0042 9.2E-08 54.9 9.1 25 53-77 363-387 (529)
493 KOG2680|consensus 97.0 0.0008 1.7E-08 54.8 4.0 55 20-77 38-92 (454)
494 COG1936 Predicted nucleotide k 97.0 0.00054 1.2E-08 51.2 2.8 27 156-182 129-155 (180)
495 TIGR02782 TrbB_P P-type conjug 97.0 0.0014 3.1E-08 53.8 5.6 24 53-76 134-157 (299)
496 PRK13948 shikimate kinase; Pro 97.0 0.00079 1.7E-08 51.3 3.8 26 51-76 10-35 (182)
497 PRK11664 ATP-dependent RNA hel 97.0 0.0071 1.5E-07 56.2 10.6 17 53-69 22-38 (812)
498 PF00488 MutS_V: MutS domain V 97.0 0.011 2.5E-07 46.8 10.5 25 52-76 44-68 (235)
499 PRK03731 aroL shikimate kinase 97.0 0.00069 1.5E-08 50.7 3.4 23 53-75 4-26 (171)
500 TIGR02760 TraI_TIGR conjugativ 97.0 0.0043 9.3E-08 62.5 9.7 25 53-77 448-472 (1960)
No 1
>KOG2170|consensus
Probab=100.00 E-value=7.5e-37 Score=241.32 Aligned_cols=194 Identities=38% Similarity=0.655 Sum_probs=185.1
Q ss_pred CCCcccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc
Q psy1695 1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK 80 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~ 80 (202)
|||. |..+.+|+..|+..|+..++||..|++.+..+++.++.+++ +++|+++-|+|++||||+++++.||+.++.
T Consensus 62 ~cc~-d~~~~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~--- 136 (344)
T KOG2170|consen 62 ECCI-DNDIRNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPLVLSFHGWTGTGKNYVAEIIAENLYR--- 136 (344)
T ss_pred HHcc-cccccccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCCCchhHHHHHHHHHHHh---
Confidence 5887 45578999999999999999999999999999999999888 999999999999999999999999999999
Q ss_pred CcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCce
Q psy1695 81 DKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNT 160 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~ 160 (202)
.|..+++++.+.+.++++++.++..|++++.+++.+.++.|+.+++||||+|||++..++.|.++++..+...+++++++
T Consensus 137 ~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frka 216 (344)
T KOG2170|consen 137 GGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKA 216 (344)
T ss_pred ccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred EEEEeeCcChHHHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695 161 IFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYL 199 (202)
Q Consensus 161 ~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 199 (202)
+|||.||.++++|.+..++++++|++|-+.+++.++.-|
T Consensus 217 IFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L 255 (344)
T KOG2170|consen 217 IFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPAL 255 (344)
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHH
Confidence 999999999999999999999999999999999887654
No 2
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-34 Score=251.90 Aligned_cols=184 Identities=21% Similarity=0.348 Sum_probs=155.8
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCc---Cccch
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRF 87 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~ 87 (202)
.+..|++.|.+.|+||+.|++.+.+++++...+-.++++|.+ ++|.||+|||||.+|++||..|+..+..- .+++|
T Consensus 481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy 560 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY 560 (786)
T ss_pred HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence 567899999999999999999999999997665555779985 99999999999999999999998731110 13344
Q ss_pred hhhh-cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEE
Q psy1695 88 VHKF-NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIF 162 (202)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~ 162 (202)
...+ .+.+.+++|+|+| |.+ .+.+++++++.|++||+||||||++|+++|.|+|+||+|+++++ ++|+|+++
T Consensus 561 ~EkHsVSrLIGaPPGYVG-yee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHHHHHHHHhCCCCCCce-ecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 4333 3566789999999 988 88999999999999999999999999999999999999999976 69999999
Q ss_pred EEeeCcChHHHHHHH----------------HHHHHhhhHHHHhccchhHHH
Q psy1695 163 LFLSNSGGTEIMNTF----------------LELRKSECIEFIFQCQPLKVY 198 (202)
Q Consensus 163 Iltsn~~~~~i~~~~----------------~~~~~~~~~r~~~~~~~~~~~ 198 (202)
|||||.+.+.+.+.. ..+...++|+|+.|++.+.+|
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F 689 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPF 689 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEec
Confidence 999999988766432 247889999999999976554
No 3
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=99.95 E-value=2.6e-27 Score=166.90 Aligned_cols=123 Identities=40% Similarity=0.762 Sum_probs=116.9
Q ss_pred CCCcccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc
Q psy1695 1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK 80 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~ 80 (202)
|||.+.+ |++|+..|+..|++.++||+.|.+.+.+++..++.+++ +++|+++.|+||||||||++++.||+.++.
T Consensus 5 eCC~~~~-i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-p~KpLVlSfHG~tGtGKn~v~~liA~~ly~--- 79 (127)
T PF06309_consen 5 ECCDDRW-IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-PRKPLVLSFHGWTGTGKNFVSRLIAEHLYK--- 79 (127)
T ss_pred ccCCCcc-CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CCCCEEEEeecCCCCcHHHHHHHHHHHHHh---
Confidence 7999776 99999999999999999999999999999999998876 889999999999999999999999999999
Q ss_pred CcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695 81 DKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 128 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii 128 (202)
.|..+++++.+.+..+++....+..|.+++..++.+.+..|+.+++||
T Consensus 80 ~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 80 SGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred cccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 888999999999999999999999999999999999999999999875
No 4
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.94 E-value=2.4e-26 Score=209.60 Aligned_cols=176 Identities=20% Similarity=0.307 Sum_probs=138.6
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
++.+|++.|++.|+||+.|++.+..++.....+-..+++|.+ ++|+||+|||||++|+++|+.+++ . ...++++
T Consensus 499 ~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~--~~~~~~~ 573 (821)
T CHL00095 499 KLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---S--EDAMIRL 573 (821)
T ss_pred HHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---C--ccceEEE
Confidence 467899999999999999999999999875443222568875 899999999999999999999987 3 2334444
Q ss_pred hcccc---------cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~~~---------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++.+ .++++++++ |.+ .+.+.+.+..+|++||+|||+|++++.+++.|+++|++|++++. +++
T Consensus 574 d~s~~~~~~~~~~l~g~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 574 DMSEYMEKHTVSKLIGSPPGYVG-YNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred EchhccccccHHHhcCCCCcccC-cCc--cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEec
Confidence 44433 345567776 554 56678888999999999999999999999999999999988754 589
Q ss_pred CceEEEEeeCcChHHHHHH-------------------------HHHHHHhhhHHHHhccchh
Q psy1695 158 QNTIFLFLSNSGGTEIMNT-------------------------FLELRKSECIEFIFQCQPL 195 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~-------------------------~~~~~~~~~~r~~~~~~~~ 195 (202)
++++||+|||.+.+.+... .-.....++|+|+.|++.+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~i 713 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEI 713 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeE
Confidence 9999999999998755421 0123556888898888653
No 5
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=7.5e-26 Score=206.10 Aligned_cols=174 Identities=23% Similarity=0.287 Sum_probs=138.4
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
++..|++.|++.|+||+.|++.+.+++.....+-..+++|++ ++|+||+|||||++|+++|+.++. . ...++.+
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~--~~~~~~~ 630 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---G--EQNLITI 630 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---C--CcceEEE
Confidence 567899999999999999999999999986544332568885 899999999999999999999976 2 1233334
Q ss_pred hc---------ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FN---------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~---------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
++ +.+.++++++++ |.+ .+.+.+.+..+|++||+|||++++++.+++.|++++++|.++++ +++
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg-~~~--~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVG-YGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccc-ccc--cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEec
Confidence 33 344566778887 654 56677888899999999999999999999999999999988764 699
Q ss_pred CceEEEEeeCcChHHHHHHHH-----------------HHHHhhhHHHHhccc
Q psy1695 158 QNTIFLFLSNSGGTEIMNTFL-----------------ELRKSECIEFIFQCQ 193 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~~~-----------------~~~~~~~~r~~~~~~ 193 (202)
+|++||+|||.+.+.+.+... .....+++.|..|++
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~ 760 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT 760 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee
Confidence 999999999998876654321 134557777777775
No 6
>KOG1051|consensus
Probab=99.93 E-value=2.2e-25 Score=199.61 Aligned_cols=157 Identities=21% Similarity=0.351 Sum_probs=135.6
Q ss_pred CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695 11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89 (202)
Q Consensus 11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 89 (202)
.++..|++.|.+.|+||++|+..+.+++.+...+...+ +|. .++|.||+|||||.+|+++|.+++.+ ...+++
T Consensus 551 ~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgs-----e~~~Ir 624 (898)
T KOG1051|consen 551 ERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGS-----EENFIR 624 (898)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCC-----ccceEE
Confidence 36889999999999999999999999999976554322 354 49999999999999999999999883 345777
Q ss_pred hhcc------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCc
Q psy1695 90 KFNS------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQN 159 (202)
Q Consensus 90 ~~~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~ 159 (202)
++++ .+.+.+++|++ +.+ .+.+.++++++|+.||+|||||++++.+++.|++++|+|+++++ +++.|
T Consensus 625 iDmse~~evskligsp~gyvG-~e~--gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 625 LDMSEFQEVSKLIGSPPGYVG-KEE--GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred echhhhhhhhhccCCCccccc-chh--HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 7766 56678888988 766 78999999999999999999999999999999999999999876 69999
Q ss_pred eEEEEeeCcChHHHHHH
Q psy1695 160 TIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 160 ~~~Iltsn~~~~~i~~~ 176 (202)
++||||||.+.+.+...
T Consensus 702 ~I~IMTsn~~~~~i~~~ 718 (898)
T KOG1051|consen 702 AIFIMTSNVGSSAIAND 718 (898)
T ss_pred eEEEEecccchHhhhcc
Confidence 99999999988755443
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.93 E-value=3.2e-25 Score=200.23 Aligned_cols=172 Identities=19% Similarity=0.301 Sum_probs=134.1
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
++..+++.|++.|+||+.|++.+.+++.....+-..+++|.+ ++|+||+|||||++|+++|+.+.. +++.+
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~--------~~~~~ 515 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV--------HLERF 515 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC--------CeEEE
Confidence 577899999999999999999999999875433222457874 899999999999999999999744 23333
Q ss_pred hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++ .+.++++++++ +.+ .+.+.+.+...|++||+|||+|++++++++.|+++|++|.++++ +++
T Consensus 516 d~se~~~~~~~~~lig~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 516 DMSEYMEKHTVSRLIGAPPGYVG-FEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred eCchhhhcccHHHHhcCCCCCcc-cch--hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 332 33445667776 544 55677888889999999999999999999999999999988754 589
Q ss_pred CceEEEEeeCcChHHHHHH-------------HHHHHHhhhHHHHhccch
Q psy1695 158 QNTIFLFLSNSGGTEIMNT-------------FLELRKSECIEFIFQCQP 194 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~-------------~~~~~~~~~~r~~~~~~~ 194 (202)
++++||+|||.+.+.+.+. .......++++|..+++.
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~ 642 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDA 642 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCe
Confidence 9999999999997765431 122345577777777764
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=200.07 Aligned_cols=173 Identities=21% Similarity=0.301 Sum_probs=134.9
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
.+..|++.|++.|+||+.|++.+..++.....+-..+++|. +++|+||||||||++|+++|+.+.. +++.+
T Consensus 448 ~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~--------~~i~i 519 (758)
T PRK11034 448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLRF 519 (758)
T ss_pred HHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC--------CcEEe
Confidence 46789999999999999999999999998654433245787 4999999999999999999999743 33333
Q ss_pred hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++ .+.+.++++++ |.. .+.+.+.+...|++||+|||+|++++++++.|+++|++|.+++. +++
T Consensus 520 d~se~~~~~~~~~LiG~~~gyvg-~~~--~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~ 596 (758)
T PRK11034 520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred echhhcccccHHHHcCCCCCccc-ccc--cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecC
Confidence 333 33445566665 443 45677778888999999999999999999999999999987653 689
Q ss_pred CceEEEEeeCcChHHHHHH-------------HHHHHHhhhHHHHhccchh
Q psy1695 158 QNTIFLFLSNSGGTEIMNT-------------FLELRKSECIEFIFQCQPL 195 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~-------------~~~~~~~~~~r~~~~~~~~ 195 (202)
+|++||+|||.+.+.+.+. .-+....++++|..+++.+
T Consensus 597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~i 647 (758)
T PRK11034 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_pred CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEE
Confidence 9999999999886654332 1234567888888888753
No 9
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.92 E-value=1.1e-24 Score=199.40 Aligned_cols=179 Identities=22% Similarity=0.341 Sum_probs=140.1
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
++..|++.|.+.|+||+.|++.+..++.+...+-..+++|. +++|+||+|||||++|+++|+.+++ .+ .+++.+
T Consensus 555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~--~~~i~~ 629 (852)
T TIGR03346 555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DE--DAMVRI 629 (852)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CC--CcEEEE
Confidence 46788999999999999999999999998654322245776 4999999999999999999999876 31 234444
Q ss_pred hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++ .+.++++++++ |.+ .+.+.+.+...|+.||+|||++++++.+++.|+++|++|.++++ +++
T Consensus 630 d~s~~~~~~~~~~l~g~~~g~~g-~~~--~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 630 DMSEYMEKHSVARLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred echhhcccchHHHhcCCCCCccC-ccc--ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEec
Confidence 333 33445567776 554 56777888889999999999999999999999999999988764 589
Q ss_pred CceEEEEeeCcChHHHHHH------------HH-HHHHhhhHHHHhccchhHHH
Q psy1695 158 QNTIFLFLSNSGGTEIMNT------------FL-ELRKSECIEFIFQCQPLKVY 198 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~------------~~-~~~~~~~~r~~~~~~~~~~~ 198 (202)
+|++||+|||.+.+.+.+. .. .....++++|..+++.+.+|
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF 760 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF 760 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEec
Confidence 9999999999988755442 11 24666889999998765444
No 10
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=9.1e-24 Score=192.92 Aligned_cols=177 Identities=19% Similarity=0.316 Sum_probs=135.2
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
++..|++.|.+.++||+.|++.+..++.....+...+++|. +++|+||+|||||++|++||+.++. .+ ..++.+
T Consensus 558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~--~~~i~i 632 (857)
T PRK10865 558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SD--DAMVRI 632 (857)
T ss_pred HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CC--CcEEEE
Confidence 46789999999999999999999999998654322245786 5999999999999999999999876 21 233333
Q ss_pred hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++ .+.+.++++++ +.+ .+.+.+.+...|++||+|||++++++.+++.|++++++|.++++ +++
T Consensus 633 d~se~~~~~~~~~LiG~~pgy~g-~~~--~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 633 DMSEFMEKHSVSRLVGAPPGYVG-YEE--GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred EhHHhhhhhhHHHHhCCCCcccc-cch--hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEee
Confidence 332 23445566665 444 45567778888899999999999999999999999999987754 689
Q ss_pred CceEEEEeeCcChHHHHHHH-------------HHHHHhhhHHHHhccchhH
Q psy1695 158 QNTIFLFLSNSGGTEIMNTF-------------LELRKSECIEFIFQCQPLK 196 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~~~~-------------~~~~~~~~~r~~~~~~~~~ 196 (202)
+|++||+|||.+.+.+.+.+ ......++++|..+++.+.
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ii 761 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVV 761 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeE
Confidence 99999999999877654321 1134567788888886543
No 11
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.84 E-value=2.3e-21 Score=146.08 Aligned_cols=136 Identities=21% Similarity=0.264 Sum_probs=93.2
Q ss_pred Cce-EEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhhcccccCC--CCchhHHHHHHhHHHHHHhhhhCCceE
Q psy1695 50 KAL-AISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFP--NENHVSLYRLQLTNWIISNVTACDRAI 125 (202)
Q Consensus 50 ~pl-~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~v 125 (202)
+|. .++|.||+|||||++|+++|+.++ . . ..+++.++++.+... ....+. .+.......+...+..|
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~---~--~~~~~~~d~s~~~~~~~~~~~~~----~l~~~~~~~v~~~~~gV 71 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVG---S--ERPLIRIDMSEYSEGDDVESSVS----KLLGSPPGYVGAEEGGV 71 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-S---S--CCEEEEEEGGGHCSHHHCSCHCH----HHHHHTTCHHHHHHHTE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccC---C--ccchHHHhhhcccccchHHhhhh----hhhhcccceeeccchhh
Confidence 355 499999999999999999999998 4 2 345666676665440 011111 00110001111222359
Q ss_pred EEEecCCCCCh-----------hHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHHHHHHH-------------
Q psy1695 126 FIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNTF------------- 177 (202)
Q Consensus 126 iiiDEid~~~~-----------~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~i~~~~------------- 177 (202)
|+||||||+++ .+++.|+++||++.+++. ++++|++||+|||.+...+....
T Consensus 72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~ 151 (171)
T PF07724_consen 72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQ 151 (171)
T ss_dssp EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHH
T ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHHHHH
Confidence 99999999999 999999999999988643 69999999999999988776621
Q ss_pred --HHHHHhhhHHHHhccch
Q psy1695 178 --LELRKSECIEFIFQCQP 194 (202)
Q Consensus 178 --~~~~~~~~~r~~~~~~~ 194 (202)
-.....++++|..|++.
T Consensus 152 ~~~~~~~~f~pEf~~Ri~~ 170 (171)
T PF07724_consen 152 IRDLVEYGFRPEFLGRIDV 170 (171)
T ss_dssp HHHHHHHTS-HHHHTTSSE
T ss_pred HHHHHHcCCCHHHHccCCc
Confidence 22455677777777653
No 12
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.80 E-value=9.1e-19 Score=147.67 Aligned_cols=143 Identities=22% Similarity=0.328 Sum_probs=98.8
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC----CCC------CceEEEEecCCCCcHHHHHHHHHHHhhccccC
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY----HNT------KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD 81 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~----~~~------~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~ 81 (202)
....+++.|++.|+||+.|++.+..++.++...-. .+. .+.+++|+||||||||++|+++|+.+..
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~---- 142 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV---- 142 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC----
Confidence 47899999999999999999999999866432211 011 1236999999999999999999988532
Q ss_pred cCccchhhhhcccccCCCCchhHHHHHHhHHHHHHh-------hhhCCceEEEEecCCCCCh--------------hHHH
Q psy1695 82 KGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISN-------VTACDRAIFIFDEVDKFPK--------------GLLD 140 (202)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------l~~~~~~viiiDEid~~~~--------------~~~~ 140 (202)
++.......+ ..+++++ ... ...+... +.....+||+|||+|++++ ++|+
T Consensus 143 ----pf~~~da~~L--~~~gyvG-~d~--e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 143 ----PFAIADATTL--TEAGYVG-EDV--ENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred ----CeEEechhhc--ccccccc-ccH--HHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 3333333332 1223433 111 1222222 2233447999999999987 6999
Q ss_pred HHHHhcccCcccc-------cccCCceEEEEeeCc
Q psy1695 141 VIIPFIDHHAVYN-------QISFQNTIFLFLSNS 168 (202)
Q Consensus 141 ~L~~~le~~~~~~-------~~~~~~~~~Iltsn~ 168 (202)
.|+++|+ |.+++ ..++++.++|+|||.
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence 9999996 66542 257899999999999
No 13
>KOG0989|consensus
Probab=99.78 E-value=9.1e-19 Score=139.44 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=93.9
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|+.+|+...+. ++.||+.++..+.+++.+ . . -| +++||||||||||+.|+++|+++++. +-....
T Consensus 26 wteKYrPkt~d-----e~~gQe~vV~~L~~a~~~-~-~-----lp-~~LFyGPpGTGKTStalafar~L~~~--~~~~~r 90 (346)
T KOG0989|consen 26 WTEKYRPKTFD-----ELAGQEHVVQVLKNALLR-R-I-----LP-HYLFYGPPGTGKTSTALAFARALNCE--QLFPCR 90 (346)
T ss_pred hHHHhCCCcHH-----hhcchHHHHHHHHHHHhh-c-C-----Cc-eEEeeCCCCCcHhHHHHHHHHHhcCc--cccccc
Confidence 44555555553 599999999999999987 2 2 22 79999999999999999999999882 111112
Q ss_pred hhhhhcccccCCC--CchhHHHHHHhHHHHHHhh------hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695 87 FVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNV------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ 158 (202)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l------~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~ 158 (202)
+...+.+...+-. +..+..+ ..+.... ...++.||||||+|.|+.++|+.|.+.||+.. +
T Consensus 91 vl~lnaSderGisvvr~Kik~f-----akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------~ 158 (346)
T KOG0989|consen 91 VLELNASDERGISVVREKIKNF-----AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------R 158 (346)
T ss_pred hhhhcccccccccchhhhhcCH-----HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------c
Confidence 2222222211110 0000001 1111111 11234999999999999999999999999976 8
Q ss_pred ceEEEEeeCcChHHH
Q psy1695 159 NTIFLFLSNSGGTEI 173 (202)
Q Consensus 159 ~~~~Iltsn~~~~~i 173 (202)
++.||+++|.-...+
T Consensus 159 ~trFiLIcnylsrii 173 (346)
T KOG0989|consen 159 TTRFILICNYLSRII 173 (346)
T ss_pred ceEEEEEcCChhhCC
Confidence 999999999876543
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.3e-17 Score=145.80 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----------CcCccchhhhh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----------DKGTSRFVHKF 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----------~~~~~~~~~~~ 91 (202)
++|+||+.+++.+.+++... +.++.+||+||+|||||++|+.+++.+.+... .+.+..+..+.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 36999999999888777643 24557999999999999999999999987211 11111222221
Q ss_pred cc------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 92 NS------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 92 ~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.. .+.......+...++ +...+...-...++.|+||||+|+|+...+|.|++.||+++ .+++||++
T Consensus 89 aG~hpDviEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-------~~v~FILa 160 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------EHVKFILA 160 (700)
T ss_pred cCCCCcceEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-------CCceEEEE
Confidence 11 111111111221111 11222111223456999999999999999999999999987 89999999
Q ss_pred eCcChHHHHHHHHHHHHhhhHHHHhcc
Q psy1695 166 SNSGGTEIMNTFLELRKSECIEFIFQC 192 (202)
Q Consensus 166 sn~~~~~i~~~~~~~~~~~~~r~~~~~ 192 (202)
||...+.+ ...+.-|.+|.++-
T Consensus 161 Ttep~kLl-----pTIrSRCq~f~f~~ 182 (700)
T PRK12323 161 TTDPQKIP-----VTVLSRCLQFNLKQ 182 (700)
T ss_pred eCChHhhh-----hHHHHHHHhcccCC
Confidence 98755432 33444455555544
No 15
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=1.7e-17 Score=134.71 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHh-----Hh--ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ--NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 82 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~-----~~--~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~ 82 (202)
+.+++.+.+.|.++++|++.+++++.+.+... .. +...++.+++++|+||||||||++|+++|+.++. .+
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~---~g 87 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK---LG 87 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH---cC
Confidence 57899999999999999999999887665321 11 1111234567999999999999999999999765 33
Q ss_pred C--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcc
Q psy1695 83 G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 83 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~ 151 (202)
. ..+++.+....+. +.|.........+.+.....+|+||||++.+ ..++++.|+++|++..
T Consensus 88 ~~~~~~~~~v~~~~l~-------~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~- 159 (287)
T CHL00181 88 YIKKGHLLTVTRDDLV-------GQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR- 159 (287)
T ss_pred CCCCCceEEecHHHHH-------HHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-
Confidence 2 1223333322221 1111100112233445555689999999986 4578899999999864
Q ss_pred cccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHH
Q psy1695 152 YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFI 189 (202)
Q Consensus 152 ~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~ 189 (202)
.+.++|++++... .+.++...+..+.||.
T Consensus 160 ------~~~~vI~ag~~~~---~~~~~~~np~L~sR~~ 188 (287)
T CHL00181 160 ------DDLVVIFAGYKDR---MDKFYESNPGLSSRIA 188 (287)
T ss_pred ------CCEEEEEeCCcHH---HHHHHhcCHHHHHhCC
Confidence 6677777764431 2334444455555554
No 16
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.74 E-value=3.3e-17 Score=138.76 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=96.4
Q ss_pred CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC-------CCCc-eEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695 11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH-------NTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 82 (202)
Q Consensus 11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~-------~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~ 82 (202)
....++.+.|++.|+||+.|++.+..++..+...-.. ...+ .+++|+||||||||++|+++|+.+..
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~----- 134 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV----- 134 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC-----
Confidence 4678999999999999999999998888653221100 0011 26999999999999999999988633
Q ss_pred CccchhhhhcccccCCCCchhHHHHHHhHHHHH----HhhhhCCceEEEEecCCCCChh--------------HHHHHHH
Q psy1695 83 GTSRFVHKFNSRIHFPNENHVSLYRLQLTNWII----SNVTACDRAIFIFDEVDKFPKG--------------LLDVIIP 144 (202)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~viiiDEid~~~~~--------------~~~~L~~ 144 (202)
+++.++++.+.. .++++...+.+...+. ..+..+..+||+|||+|++++. +|+.|++
T Consensus 135 ---pf~~id~~~l~~--~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 135 ---PFAIADATTLTE--AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 209 (412)
T ss_pred ---Cceecchhhccc--CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence 555555544321 2333311111111111 1133456789999999999753 8999999
Q ss_pred hcccCccc--c----cccCCceEEEEeeCc
Q psy1695 145 FIDHHAVY--N----QISFQNTIFLFLSNS 168 (202)
Q Consensus 145 ~le~~~~~--~----~~~~~~~~~Iltsn~ 168 (202)
+||..... + ..++.+.++|.|||.
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 99854321 1 134566667777776
No 17
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=6.1e-17 Score=138.18 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=86.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS---- 93 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~---- 93 (202)
+++||+.++..+..++... +.|.+++|+||+|||||++|+.+|+.+.+.... +.+..+..+...
T Consensus 19 dvVGQe~iv~~L~~~i~~~-------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSG-------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHhChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 5999999999887776642 245569999999999999999999999873110 111112111110
Q ss_pred --cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 94 --RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 94 --~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.+.......+...+ .+...+...-..+.+.|+||||+|+++.++++.|++.||+++ .+++||++||...
T Consensus 92 viEIdaas~~gVd~IR-eL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------~~viFILaTte~~ 162 (484)
T PRK14956 92 VLEIDAASNRGIENIR-ELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------AHIVFILATTEFH 162 (484)
T ss_pred ceeechhhcccHHHHH-HHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-------CceEEEeecCChh
Confidence 01000011111111 112222222223456899999999999999999999999987 8999999998743
No 18
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=9.6e-17 Score=124.03 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=73.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (202)
++++||++.++.+.-.+....... .++ +++||||||+|||++|+.||+++.. ++..... +.-
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~----~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------~~~~~sg-----~~i 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRG----EALDHMLFYGPPGLGKTTLARIIANELGV--------NFKITSG-----PAI 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTT----S---EEEEESSTTSSHHHHHHHHHHHCT----------EEEEEC-----CC-
T ss_pred HHccCcHHHHhhhHHHHHHHHhcC----CCcceEEEECCCccchhHHHHHHHhccCC--------CeEeccc-----hhh
Confidence 469999999999866666554321 333 7999999999999999999999643 2221111 110
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc--cc---------ccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---------~~~~~~~~Iltsn~~ 169 (202)
...+ ++...+ ..+ .+.+|+|||||+++++.+++.|++.||++.+. .+ .+..+-.+|-+|+..
T Consensus 87 ~k~~----dl~~il-~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~ 159 (233)
T PF05496_consen 87 EKAG----DLAAIL-TNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA 159 (233)
T ss_dssp -SCH----HHHHHH-HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred hhHH----HHHHHH-Hhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence 1111 111111 112 34589999999999999999999999998752 12 244555666666543
No 19
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.1e-16 Score=137.27 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=88.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhccc---
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSR--- 94 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~--- 94 (202)
+++||+.+++.+.+++... +.|.++||+||+|||||++|+++|+.+.+..+. +.+..+..+....
T Consensus 17 divGq~~v~~~L~~~~~~~-------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ-------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC-------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 5999999999888777642 245579999999999999999999999873211 1111222221111
Q ss_pred ---ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 95 ---IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 95 ---~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+.......+...++ +...+...-..+++.|+||||+|+++...+|.|++.||+++ .++.||++|+...+
T Consensus 90 ~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-------~~~~fIlattd~~k 161 (509)
T PRK14958 90 LFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-------SHVKFILATTDHHK 161 (509)
T ss_pred EEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-------CCeEEEEEECChHh
Confidence 11111111221111 11111112223456899999999999999999999999987 88999999975443
No 20
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.5e-16 Score=143.23 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=88.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh-----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF----- 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~----- 91 (202)
++|+||+.+++.+.+++... +.|..+||+||+|||||++|+++|+.+.+... .+.+..+..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 36999999999887776642 24556899999999999999999999987311 11111121111
Q ss_pred -cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 92 -NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
...+.......+...+ .+...+...-..+++.|+||||+++|+..++|.|++.||+++ .+++||++|+...
T Consensus 89 DviEidAas~~kVDdIR-eLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-------~~vrFILaTTe~~ 160 (944)
T PRK14949 89 DLIEVDAASRTKVDDTR-ELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-------EHVKFLLATTDPQ 160 (944)
T ss_pred eEEEeccccccCHHHHH-HHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-------CCeEEEEECCCch
Confidence 1111111011122111 122222222223567999999999999999999999999987 8899999987765
Q ss_pred H
Q psy1695 171 T 171 (202)
Q Consensus 171 ~ 171 (202)
.
T Consensus 161 k 161 (944)
T PRK14949 161 K 161 (944)
T ss_pred h
Confidence 5
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=9.5e-17 Score=142.25 Aligned_cols=136 Identities=12% Similarity=0.145 Sum_probs=88.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcc---
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNS--- 93 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~--- 93 (202)
++|+||+.+++.+.+++... +.+..+||+||+|||||++|+.+++.+++... .+.+..+..+...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 36999999999887776532 24556899999999999999999999987311 1111122222111
Q ss_pred ---cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 94 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 94 ---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.+.......+...++ +...........+++|+||||+|+|+...+|.|++.||+.. .++.|||+||...
T Consensus 89 DviEIDAas~rgVDdIRe-LIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-------~~v~FILaTtd~~ 160 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAA-LLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------PHVKFILATTDPQ 160 (830)
T ss_pred eEEEecccccccHHHHHH-HHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-------CCeEEEEEECChh
Confidence 111111111111111 11111111223456999999999999999999999999987 8999999999765
Q ss_pred HH
Q psy1695 171 TE 172 (202)
Q Consensus 171 ~~ 172 (202)
+.
T Consensus 161 KI 162 (830)
T PRK07003 161 KI 162 (830)
T ss_pred hc
Confidence 53
No 22
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=2.4e-16 Score=128.03 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=100.9
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHh-----Hh--ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ--NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK 82 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~-----~~--~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~ 82 (202)
+..++++.+.|++.++|.+.+++++.+.+... .. +-.....+++++|+||||||||++|+++|+.++. .+
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~---~g 86 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR---LG 86 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cC
Confidence 45678888899989999999999987654431 11 1000112347999999999999999999999875 33
Q ss_pred C--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcc
Q psy1695 83 G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 83 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~ 151 (202)
. ..+++.+....+... +++.. ...+.+.+..+..+|+||||++.+ +..+++.|++.|+.+.
T Consensus 87 ~~~~~~~v~v~~~~l~~~---~~g~~----~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~- 158 (284)
T TIGR02880 87 YVRKGHLVSVTRDDLVGQ---YIGHT----APKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR- 158 (284)
T ss_pred CcccceEEEecHHHHhHh---hcccc----hHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-
Confidence 2 123443333222111 11100 112233444555689999999977 3467899999999865
Q ss_pred cccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 152 YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 152 ~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
.+.++|++++... .+.++...+..+.||..
T Consensus 159 ------~~~~vI~a~~~~~---~~~~~~~np~L~sR~~~ 188 (284)
T TIGR02880 159 ------DDLVVILAGYKDR---MDSFFESNPGFSSRVAH 188 (284)
T ss_pred ------CCEEEEEeCCcHH---HHHHHhhCHHHHhhCCc
Confidence 6777777766432 23444445556666643
No 23
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.5e-17 Score=140.34 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=108.3
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 89 (202)
.+|+...++.|+++-+|-+++++.+.+.+.-....+. -++..++|+||||||||++++.||+.+.+ .|++
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~--~kGpILcLVGPPGVGKTSLgkSIA~al~R--------kfvR 380 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK--LKGPILCLVGPPGVGKTSLGKSIAKALGR--------KFVR 380 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCCchhHHHHHHHHhCC--------CEEE
Confidence 5689999999999999999999999998875433221 13336899999999999999999999865 5666
Q ss_pred hhccccc------CCCCchhHHHHHHhHHHHHHhhhhCC--ceEEEEecCCCCChh----HHHHHHHhcccCc---cccc
Q psy1695 90 KFNSRIH------FPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPKG----LLDVIIPFIDHHA---VYNQ 154 (202)
Q Consensus 90 ~~~~~~~------~~~~~~~~~~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~~----~~~~L~~~le~~~---~~~~ 154 (202)
+...... +....|+| .+.+.+.+.+..+. .+|++|||||||..+ -..+|+.+||.-+ +.+.
T Consensus 381 ~sLGGvrDEAEIRGHRRTYIG----amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~Dh 456 (782)
T COG0466 381 ISLGGVRDEAEIRGHRRTYIG----AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDH 456 (782)
T ss_pred EecCccccHHHhccccccccc----cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhc
Confidence 6543322 22233333 44555555555443 489999999999874 4788999998654 2222
Q ss_pred -----ccCCceEEEEeeCcCh
Q psy1695 155 -----ISFQNTIFLFLSNSGG 170 (202)
Q Consensus 155 -----~~~~~~~~Iltsn~~~ 170 (202)
.|.++++||.|+|.-.
T Consensus 457 YLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 457 YLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred cccCccchhheEEEeecCccc
Confidence 5999999999999864
No 24
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.8e-16 Score=134.35 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=86.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh------
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF------ 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~------ 91 (202)
+++||+.+++.+.+++... +.|.+++|+||+|+|||++|+.+|+.+.|..+ .+.+..+..+.
T Consensus 14 dliGQe~vv~~L~~a~~~~-------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLN-------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 5999999998887666532 25558999999999999999999999877311 11112222221
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.-.+.......+...++ +.......-..+.+.|+||||++.++...+|.|++.||+++ .++.||++|+...+
T Consensus 87 v~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-------~~v~fIlatte~~K 158 (491)
T PRK14964 87 VIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-------PHVKFILATTEVKK 158 (491)
T ss_pred EEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-------CCeEEEEEeCChHH
Confidence 11111111111221111 11111111122356899999999999999999999999988 88999999965444
No 25
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3.1e-16 Score=138.57 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=89.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccc--
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSR-- 94 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~-- 94 (202)
++++||+.+++.+.+++... +.+..+||+||+|||||++|+.+|+.+.+... .+.+..+..+....
T Consensus 16 ~divGQe~vv~~L~~~l~~~-------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence 36999999999887777642 24556899999999999999999999988311 11121122221111
Q ss_pred ----ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 95 ----IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 95 ----~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+.......+...+ .+...+...-..+++.|+||||+|+|+...+|.|++.||+++ .++.||++|+...
T Consensus 89 D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------~~v~FIL~Tt~~~ 160 (647)
T PRK07994 89 DLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTDPQ 160 (647)
T ss_pred CceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-------CCeEEEEecCCcc
Confidence 1111111122111 122222222234567999999999999999999999999988 8999999987655
Q ss_pred H
Q psy1695 171 T 171 (202)
Q Consensus 171 ~ 171 (202)
.
T Consensus 161 k 161 (647)
T PRK07994 161 K 161 (647)
T ss_pred c
Confidence 3
No 26
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.2e-16 Score=136.24 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=88.4
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhc-----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFN----- 92 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~----- 92 (202)
+++||+.+++.+.+++... +.|++++|+||+|||||++|+++|+.+++... .+.+..+..+..
T Consensus 14 eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 5999999999988777642 25657999999999999999999999987311 111112222111
Q ss_pred ---ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 93 ---SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
..+.......+...+ ++...+...-..+++.|+||||++.|+.+++|.|++.||+.+ .+++||++|+..
T Consensus 87 ~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-------~~~~fIL~tte~ 158 (584)
T PRK14952 87 IDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-------EHLIFIFATTEP 158 (584)
T ss_pred ceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-------CCeEEEEEeCCh
Confidence 011111111222111 122222222223567999999999999999999999999987 899999999655
Q ss_pred h
Q psy1695 170 G 170 (202)
Q Consensus 170 ~ 170 (202)
.
T Consensus 159 ~ 159 (584)
T PRK14952 159 E 159 (584)
T ss_pred H
Confidence 3
No 27
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=3.6e-16 Score=141.94 Aligned_cols=134 Identities=18% Similarity=0.189 Sum_probs=88.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcc----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNS---- 93 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~---- 93 (202)
+|+||+.+++.|.+++... +.++.+||+||+|||||++|+.||+.|+|... .+.+..|..+...
T Consensus 16 eiiGqe~v~~~L~~~i~~~-------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 6999999999988777642 24556999999999999999999999987321 1112222222211
Q ss_pred ----cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 94 ----RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 94 ----~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.......+...+ .+...+...-...++.|+||||+|+|+...+|.|+++||+.. .+++|||+|+..
T Consensus 89 ~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-------~~~~fIl~tt~~ 160 (824)
T PRK07764 89 LDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-------EHLKFIFATTEP 160 (824)
T ss_pred CcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-------CCeEEEEEeCCh
Confidence 11111111122111 112222222233567999999999999999999999999987 899999999655
Q ss_pred hH
Q psy1695 170 GT 171 (202)
Q Consensus 170 ~~ 171 (202)
.+
T Consensus 161 ~k 162 (824)
T PRK07764 161 DK 162 (824)
T ss_pred hh
Confidence 43
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=124.55 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=97.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCC--CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNT--KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~--~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
++++||++|+..+ +.+-.++.+|...+ -|..+||+||||||||++|+++|++.. .+++.+....+.+.+
T Consensus 121 ddViGqEeAK~kc-rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--------vp~l~vkat~liGeh 191 (368)
T COG1223 121 DDVIGQEEAKRKC-RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--------VPLLLVKATELIGEH 191 (368)
T ss_pred hhhhchHHHHHHH-HHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--------CceEEechHHHHHHH
Confidence 5799999999886 55556666554222 355799999999999999999999853 355555555444433
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
-+... .....+.+..+.....|+||||+|...- ++.|+|+.-|+.-. ....+++|..||
T Consensus 192 VGdga----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-----eneGVvtIaaTN 262 (368)
T COG1223 192 VGDGA----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-----ENEGVVTIAATN 262 (368)
T ss_pred hhhHH----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-----cCCceEEEeecC
Confidence 22211 1123344444444558999999976632 46778887777532 335667788887
Q ss_pred cCh---HHHHHHHHHHHHhhhHHHHhccchhHHHhhcC
Q psy1695 168 SGG---TEIMNTFLELRKSECIEFIFQCQPLKVYLKKL 202 (202)
Q Consensus 168 ~~~---~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 202 (202)
... ..+-.++-+...--.+.-..++..|..|+||+
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 642 11211111111111222233445577777763
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=8.9e-16 Score=134.73 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=87.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccc---
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSR--- 94 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~--- 94 (202)
+++||+.+++.+.+++... +.+.+++|+||+|||||++|+++|+.+.+... .+.+..+..+....
T Consensus 16 dVIGQe~vv~~L~~aI~~g-------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 16 ELVGQNHVSRALSSALERG-------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 6999999998888777632 24557999999999999999999999987311 01111111111111
Q ss_pred ---ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 95 ---IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 95 ---~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+.......+...++ +...+...-..+++.|+||||+++++...++.|++.|++++ .++.||++|+....
T Consensus 89 viEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------~~v~FILaTtd~~k 160 (702)
T PRK14960 89 LIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------EHVKFLFATTDPQK 160 (702)
T ss_pred eEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-------CCcEEEEEECChHh
Confidence 11111111221111 11111111223456899999999999999999999999987 78899999976544
No 30
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.67 E-value=6.3e-16 Score=124.23 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=91.0
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHh----H---hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchh
Q psy1695 18 EQLKQHVHGQELAISHICGALKNH----F---QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFV 88 (202)
Q Consensus 18 ~~L~~~liGq~~a~~~l~~~l~~~----~---~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~ 88 (202)
++|++ ++|++.+++.+.+.+... . .+......+.+++|+||||||||++|+++|+.+.. .+. ...++
T Consensus 3 ~~l~~-~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v 78 (261)
T TIGR02881 3 RELSR-MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLI 78 (261)
T ss_pred HHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceE
Confidence 45554 999999999987655432 1 11110223457999999999999999999998764 221 22333
Q ss_pred hhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCce
Q psy1695 89 HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNT 160 (202)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~ 160 (202)
.+..+.+... +++ .....+.+.+.....+|+||||++.+. .+.++.|++.|++.. .+.
T Consensus 79 ~~~~~~l~~~---~~g----~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------~~~ 144 (261)
T TIGR02881 79 EVERADLVGE---YIG----HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------NEF 144 (261)
T ss_pred EecHHHhhhh---hcc----chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------CCE
Confidence 3333322211 111 112223344555556899999999875 357888999998864 566
Q ss_pred EEEEeeCcChHHHHHHHHHHHHhhhHHHH
Q psy1695 161 IFLFLSNSGGTEIMNTFLELRKSECIEFI 189 (202)
Q Consensus 161 ~~Iltsn~~~~~i~~~~~~~~~~~~~r~~ 189 (202)
++|++++... .+.++...++.+.||.
T Consensus 145 ~vila~~~~~---~~~~~~~~p~L~sRf~ 170 (261)
T TIGR02881 145 VLILAGYSDE---MDYFLSLNPGLRSRFP 170 (261)
T ss_pred EEEecCCcch---hHHHHhcChHHHhccc
Confidence 6777654422 2334444455566663
No 31
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=3.1e-16 Score=142.85 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=96.3
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 89 (202)
..++..+++.|+++++||+.+++.+.+.+........ . ++.+++|+||||||||++|+++|+.+.. ++++
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~-~~~~lll~GppG~GKT~lAk~iA~~l~~--------~~~~ 377 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-M-KGPILCLVGPPGVGKTSLGKSIAKALNR--------KFVR 377 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-C-CCceEEEECCCCCCHHHHHHHHHHHhcC--------CeEE
Confidence 4578999999999999999999999987765432221 1 2237999999999999999999999754 2222
Q ss_pred hhccc------ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh----HHHHHHHhccc---Ccccc---
Q psy1695 90 KFNSR------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG----LLDVIIPFIDH---HAVYN--- 153 (202)
Q Consensus 90 ~~~~~------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~----~~~~L~~~le~---~~~~~--- 153 (202)
+.++. +.+....+++.....+...+... ....+||+|||||++.+. ..+.|+++|+. +.+.+
T Consensus 378 i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~--~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~ 455 (775)
T TIGR00763 378 FSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA--KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYL 455 (775)
T ss_pred EeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh--CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccC
Confidence 22111 11111112210001111122211 123369999999999764 45889999985 22322
Q ss_pred --cccCCceEEEEeeCcCh
Q psy1695 154 --QISFQNTIFLFLSNSGG 170 (202)
Q Consensus 154 --~~~~~~~~~Iltsn~~~ 170 (202)
..++++++||+|||...
T Consensus 456 ~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 456 DVPFDLSKVIFIATANSID 474 (775)
T ss_pred CceeccCCEEEEEecCCch
Confidence 24778999999999853
No 32
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.2e-15 Score=128.67 Aligned_cols=138 Identities=11% Similarity=0.193 Sum_probs=90.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC--CCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----CcCccchhhhhc---
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----DKGTSRFVHKFN--- 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~--- 92 (202)
++|+||+.+++.+.+++........ ..+.|.+++|+||+|+|||++|+.+|+.+.+... .+.+..+..+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4699999999999999986432111 0124567999999999999999999999988311 111111222211
Q ss_pred ccccC--CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 93 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 93 ~~~~~--~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
+++.. +....++ .+++. .+.+.+. ..++.|+||||+|+|++..+|.|++.||+++ .+++||++|
T Consensus 85 pD~~~i~~~~~~i~--i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-------~~~~fIL~a 154 (394)
T PRK07940 85 PDVRVVAPEGLSIG--VDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-------PRTVWLLCA 154 (394)
T ss_pred CCEEEeccccccCC--HHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-------CCCeEEEEE
Confidence 11111 1111121 11222 2223232 2345899999999999999999999999987 788899988
Q ss_pred CcC
Q psy1695 167 NSG 169 (202)
Q Consensus 167 n~~ 169 (202)
+..
T Consensus 155 ~~~ 157 (394)
T PRK07940 155 PSP 157 (394)
T ss_pred CCh
Confidence 874
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=5.3e-16 Score=128.07 Aligned_cols=138 Identities=17% Similarity=0.255 Sum_probs=89.0
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|+.+|+...+. +++||+.+++.+...+. .+. .| +++|+||||||||++|+++|+.+++ .+....
T Consensus 3 w~~kyrP~~l~-----~~~g~~~~~~~L~~~~~----~~~---~~-~lll~Gp~G~GKTtla~~la~~l~~---~~~~~~ 66 (319)
T PLN03025 3 WVEKYRPTKLD-----DIVGNEDAVSRLQVIAR----DGN---MP-NLILSGPPGTGKTTSILALAHELLG---PNYKEA 66 (319)
T ss_pred hhhhcCCCCHH-----HhcCcHHHHHHHHHHHh----cCC---Cc-eEEEECCCCCCHHHHHHHHHHHHhc---ccCccc
Confidence 55667777765 58999998887765544 221 34 5899999999999999999999876 321112
Q ss_pred hhhhhcccccCCCCchhHHHHHHhHHHHHHh--hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
++..+.+ +.......++.+....... .......|++|||+|.++...++.|++.++... .++.||+
T Consensus 67 ~~eln~s-----d~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-------~~t~~il 134 (319)
T PLN03025 67 VLELNAS-----DDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-------NTTRFAL 134 (319)
T ss_pred eeeeccc-----ccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-------CCceEEE
Confidence 2222221 1111111111111100000 111346899999999999999999999999865 6678999
Q ss_pred eeCcChHH
Q psy1695 165 LSNSGGTE 172 (202)
Q Consensus 165 tsn~~~~~ 172 (202)
++|.....
T Consensus 135 ~~n~~~~i 142 (319)
T PLN03025 135 ACNTSSKI 142 (319)
T ss_pred EeCCcccc
Confidence 99976543
No 34
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.2e-16 Score=137.24 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=104.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-Cc----Cccchhhhhcccc--
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DK----GTSRFVHKFNSRI-- 95 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~----~~~~~~~~~~~~~-- 95 (202)
+++||+.+++.+..++.... .+++++|.||-|||||++||.+|+.+.|... .+ .+..+..+.-..+
T Consensus 17 evvGQe~v~~~L~nal~~~r-------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 57999999999998888632 3347999999999999999999999998421 11 1111111211111
Q ss_pred ----cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 96 ----HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 96 ----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.......+. ....+...+...-..+.+.|++|||++.++..++|.|++.+|+++ +++.|||+|.-..+
T Consensus 90 viEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-------~hV~FIlATTe~~K 161 (515)
T COG2812 90 VIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-------SHVKFILATTEPQK 161 (515)
T ss_pred chhhhhhhccChH-HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-------cCeEEEEecCCcCc
Confidence 111111222 111223333333344556999999999999999999999999999 99999999976544
Q ss_pred HHHHHHHHHHHhhhHHHHhccchhHHHhh
Q psy1695 172 EIMNTFLELRKSECIEFIFQCQPLKVYLK 200 (202)
Q Consensus 172 ~i~~~~~~~~~~~~~r~~~~~~~~~~~~~ 200 (202)
. ......-|.||.++--+...+.+
T Consensus 162 i-----p~TIlSRcq~f~fkri~~~~I~~ 185 (515)
T COG2812 162 I-----PNTILSRCQRFDFKRLDLEEIAK 185 (515)
T ss_pred C-----chhhhhccccccccCCCHHHHHH
Confidence 2 22344556677777666555444
No 35
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.8e-15 Score=133.59 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=88.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhc----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFN---- 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~---- 92 (202)
++++||+.+++.+.+++... +.|+++||+||+|+|||++|+++++.+.+... .+.+..+..+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 36999999998888777642 24557999999999999999999999987311 111112222211
Q ss_pred --ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 93 --SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 93 --~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
..+.+.....+...+ .+...+...-...++.|+||||+|+|+...+|.|++.||+++ .+++||++||...
T Consensus 89 d~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-------~~~~fIl~t~~~~ 160 (576)
T PRK14965 89 DVFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-------PHVKFIFATTEPH 160 (576)
T ss_pred CeeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-------CCeEEEEEeCChh
Confidence 111111111121111 112222211223456899999999999999999999999987 8999999997654
No 36
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.7e-15 Score=133.57 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=86.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----------CcCccchhhhhc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----------DKGTSRFVHKFN 92 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----------~~~~~~~~~~~~ 92 (202)
+++||+.+++.+.+++... +.|..+||+||+|||||++|+++|+.++|..+ .|.+..+..+..
T Consensus 17 dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 5899999998887776643 25557999999999999999999999987311 111111222211
Q ss_pred ccc---cCCCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 93 SRI---HFPNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 93 ~~~---~~~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
..+ ..-+. ...+ . ++ .+.+.+.+. .+++.|+||||+|+|+...+|.|++.||+++ .++.|||
T Consensus 90 g~h~D~~eldaas~~~-V-d~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-------~~~~fIL 159 (618)
T PRK14951 90 GRFVDYTELDAASNRG-V-DE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-------EYLKFVL 159 (618)
T ss_pred CCCCceeecCcccccC-H-HH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-------CCeEEEE
Confidence 111 00011 0111 1 11 112222222 2346899999999999999999999999987 8899999
Q ss_pred eeCcChH
Q psy1695 165 LSNSGGT 171 (202)
Q Consensus 165 tsn~~~~ 171 (202)
+|+...+
T Consensus 160 ~Ttd~~k 166 (618)
T PRK14951 160 ATTDPQK 166 (618)
T ss_pred EECCchh
Confidence 9976544
No 37
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.65 E-value=1e-15 Score=114.53 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc----Cccchhhhhc---cccc--
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----GTSRFVHKFN---SRIH-- 96 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~----~~~~~~~~~~---~~~~-- 96 (202)
||+.+++.+.+.+... +.|.+++|+||+|+||+++|+.+|+.+++..... ....+..+.. .++.
T Consensus 1 gq~~~~~~L~~~~~~~-------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHCT-------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHcC-------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 7888888887777642 2566899999999999999999999998842221 0111111111 1110
Q ss_pred CCCCc--hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 97 FPNEN--HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 97 ~~~~~--~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.+... .++ .+++. .+.+.+.. +++.|+||||+|+|+.+++|.|++.||+++ .+++|||+|+...
T Consensus 74 ~~~~~~~~i~--i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-------~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 74 KPDKKKKSIK--IDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-------ENTYFILITNNPS 143 (162)
T ss_dssp ETTTSSSSBS--HHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-------TTEEEEEEES-GG
T ss_pred ecccccchhh--HHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-------CCEEEEEEECChH
Confidence 01111 122 11222 33333332 345899999999999999999999999998 8999999998776
Q ss_pred HH
Q psy1695 171 TE 172 (202)
Q Consensus 171 ~~ 172 (202)
..
T Consensus 144 ~i 145 (162)
T PF13177_consen 144 KI 145 (162)
T ss_dssp GS
T ss_pred HC
Confidence 53
No 38
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.6e-15 Score=130.32 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=87.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~ 96 (202)
++++||+.+++.+.+++... +.+.+++|+||+|+|||++|+.+|+.+.+... .+.+..+..+....+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 36999999999887777642 24557899999999999999999999987311 1112222222111110
Q ss_pred ---CCC-CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 97 ---FPN-ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 97 ---~~~-~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
... ....+ .+++. .+.+... .+++.|+||||+|+++..++|.|++.|++++ .++.||++|+.
T Consensus 89 d~~ei~~~~~~~--vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-------~~~~fIL~t~d 158 (527)
T PRK14969 89 DLIEVDAASNTQ--VDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTD 158 (527)
T ss_pred ceeEeeccccCC--HHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-------CCEEEEEEeCC
Confidence 001 11111 11112 2222222 2345899999999999999999999999987 78999999976
Q ss_pred ChH
Q psy1695 169 GGT 171 (202)
Q Consensus 169 ~~~ 171 (202)
...
T Consensus 159 ~~k 161 (527)
T PRK14969 159 PQK 161 (527)
T ss_pred hhh
Confidence 443
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.8e-15 Score=130.67 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=85.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~ 97 (202)
+++||+.+++.+..++... +.|.+++|+||+|||||++|+.+|+.+.+... .+.+..+..+....+..
T Consensus 17 diiGq~~~v~~L~~~i~~~-------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 5999999999887777642 14556999999999999999999999987311 11111122221111100
Q ss_pred ----CCCchhHHHHH--HhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 98 ----PNENHVSLYRL--QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 98 ----~~~~~~~~~~~--~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
......+ ..+ .+...+...-..+++.|+||||+|+++...++.|++.||+++ .+++||++|+..
T Consensus 90 lieidaas~~g-vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------~~v~fIL~Ttd~ 159 (546)
T PRK14957 90 LIEIDAASRTG-VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------EYVKFILATTDY 159 (546)
T ss_pred eEEeecccccC-HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-------CCceEEEEECCh
Confidence 0001111 111 112222222223456899999999999999999999999987 788999988653
No 40
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.8e-15 Score=125.84 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=84.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---c
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---S 93 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~ 93 (202)
++++||+.+++.+.+++... +.|.+++|+||+|+|||++|+++|+.+.+.... +.+..+..+.. .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 36999999999887777532 245578999999999999999999998762111 00001111110 0
Q ss_pred cccCCCCch-hHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 94 RIHFPNENH-VSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 94 ~~~~~~~~~-~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
.+....+.. .+ . ++ ...+.+.+.. .++.|+||||+|+++...++.|++.+++++ .++.||++|+.
T Consensus 89 d~~~~~~~~~~~-v-~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-------~~~~fIl~t~~ 158 (363)
T PRK14961 89 DLIEIDAASRTK-V-EE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------QHIKFILATTD 158 (363)
T ss_pred ceEEecccccCC-H-HH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 111001110 11 1 11 1222222222 345799999999999999999999999977 78889998865
Q ss_pred Ch
Q psy1695 169 GG 170 (202)
Q Consensus 169 ~~ 170 (202)
..
T Consensus 159 ~~ 160 (363)
T PRK14961 159 VE 160 (363)
T ss_pred hH
Confidence 43
No 41
>KOG0991|consensus
Probab=99.63 E-value=2e-15 Score=116.57 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=96.4
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|+.+|+...+. +++|.++.++.+.-.... ++-| +++|.||||+|||+.+..+|+.|.. ......
T Consensus 17 wVeKYrP~~l~-----dIVGNe~tv~rl~via~~-------gnmP-~liisGpPG~GKTTsi~~LAr~LLG---~~~ke~ 80 (333)
T KOG0991|consen 17 WVEKYRPSVLQ-----DIVGNEDTVERLSVIAKE-------GNMP-NLIISGPPGTGKTTSILCLARELLG---DSYKEA 80 (333)
T ss_pred HHHhhCchHHH-----HhhCCHHHHHHHHHHHHc-------CCCC-ceEeeCCCCCchhhHHHHHHHHHhC---hhhhhH
Confidence 66677777764 699999999887544432 1234 6899999999999999999999977 322223
Q ss_pred hhhhhcccccCCCCchhHHHHHHhHHHHHHhhh--hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT--ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
+++.+.+. ...+...+..++......+. .+.+.|+|+||+|.|...+|++|.+.||-+. +.+.|.+
T Consensus 81 vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-------~ttRFal 148 (333)
T KOG0991|consen 81 VLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-------NTTRFAL 148 (333)
T ss_pred hhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-------ccchhhh
Confidence 34444332 22222122222222222222 2456999999999999999999999999876 7888999
Q ss_pred eeCcChHHH
Q psy1695 165 LSNSGGTEI 173 (202)
Q Consensus 165 tsn~~~~~i 173 (202)
++|...+++
T Consensus 149 aCN~s~KIi 157 (333)
T KOG0991|consen 149 ACNQSEKII 157 (333)
T ss_pred hhcchhhhh
Confidence 999887765
No 42
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.63 E-value=4.7e-15 Score=111.48 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 103 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
++|.+.++..+.+.++.....+ .+++++|++||||+.+|++|.+...+ . ..+|+.++++.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~------~pVlI~GE~GtGK~~lA~~IH~~s~r---~--~~pfi~vnc~~~~~~---~- 65 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD------LPVLITGETGTGKELLARAIHNNSPR---K--NGPFISVNCAALPEE---L- 65 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST------S-EEEECSTTSSHHHHHHHHHHCSTT---T--TS-EEEEETTTS-HH---H-
T ss_pred CEeCCHHHHHHHHHHHHHhCCC------CCEEEEcCCCCcHHHHHHHHHHhhhc---c--cCCeEEEehhhhhcc---h-
Confidence 6899999999999999877543 37899999999999999999886433 2 456777776544110 0
Q ss_pred HHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695 104 SLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS 168 (202)
Q Consensus 104 ~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~ 168 (202)
....+.+ .-.+.+..+..++++||||+.+++.+|..|+++|+++.+... ....++.+|++||.
T Consensus 66 --~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 66 --LESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp --HHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred --hhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 0000000 001345566678999999999999999999999999876432 23458899999997
Q ss_pred ChHH
Q psy1695 169 GGTE 172 (202)
Q Consensus 169 ~~~~ 172 (202)
..+.
T Consensus 144 ~l~~ 147 (168)
T PF00158_consen 144 DLEE 147 (168)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7554
No 43
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=6.1e-15 Score=130.37 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=87.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccc-
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRI- 95 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~- 95 (202)
++++||+.+++.+.+++... +.|.++||+||+|||||++|+++|+.+.+.... +.+..+..+....+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence 36999999999888777642 245579999999999999999999999873110 11111222211111
Q ss_pred -----cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 96 -----HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 96 -----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.......+...++ +.......-...++.|+||||+++++...++.|++.|++.+ .++.|||+||...
T Consensus 89 DvlEidaAs~~gVd~IRe-lle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-------~~v~fILaTtd~~ 160 (709)
T PRK08691 89 DLLEIDAASNTGIDNIRE-VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTDPH 160 (709)
T ss_pred ceEEEeccccCCHHHHHH-HHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence 1111111211111 11111111122456899999999999999999999999976 7899999997654
Q ss_pred H
Q psy1695 171 T 171 (202)
Q Consensus 171 ~ 171 (202)
.
T Consensus 161 k 161 (709)
T PRK08691 161 K 161 (709)
T ss_pred c
Confidence 4
No 44
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=7.6e-15 Score=130.70 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=85.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc---Cccchhhh---hccccc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRFVHK---FNSRIH 96 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~~~~---~~~~~~ 96 (202)
+++||+.+++.+.+++... +.++++||+||+|+|||++|+++|+.+.|..... .+..+... ....+.
T Consensus 19 dIiGQe~~v~~L~~aI~~~-------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 6999999999888877642 2455799999999999999999999998832110 11111110 000000
Q ss_pred CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
....+..+ .. + .+.+.+.+. .+++.|+||||++.|+..+++.|++.||+++ .+++||++|+..
T Consensus 92 idaasn~~-vd-~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-------~~tifILaTte~ 158 (725)
T PRK07133 92 MDAASNNG-VD-E-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-------KHVIFILATTEV 158 (725)
T ss_pred EeccccCC-HH-H-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-------CceEEEEEcCCh
Confidence 00001111 11 1 122333333 3456899999999999999999999999987 889999999644
No 45
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6.5e-15 Score=127.58 Aligned_cols=129 Identities=20% Similarity=0.308 Sum_probs=85.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC---------cCccchhhhh--
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD---------KGTSRFVHKF-- 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~---------~~~~~~~~~~-- 91 (202)
+++||+.+++.+..++... +.|.+++|+||+|||||++|+++|+.+.+.... +.+..+..+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 5899999999887766542 245579999999999999999999999873110 1111111111
Q ss_pred ----cccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695 92 ----NSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 163 (202)
Q Consensus 92 ----~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I 163 (202)
...+.......+. ++.. +.+... .+++.|+||||++.++...++.|++.|++++ .+++||
T Consensus 95 ~h~Dv~eidaas~~~vd----~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-------~~~vfI 162 (507)
T PRK06645 95 NHPDIIEIDAASKTSVD----DIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-------PHIIFI 162 (507)
T ss_pred CCCcEEEeeccCCCCHH----HHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-------CCEEEE
Confidence 1111111111222 1122 222222 2346899999999999999999999999977 789999
Q ss_pred EeeCcCh
Q psy1695 164 FLSNSGG 170 (202)
Q Consensus 164 ltsn~~~ 170 (202)
++|+...
T Consensus 163 ~aTte~~ 169 (507)
T PRK06645 163 FATTEVQ 169 (507)
T ss_pred EEeCChH
Confidence 9886544
No 46
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=123.66 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=83.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-------------CcCccchhh
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-------------DKGTSRFVH 89 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-------------~~~~~~~~~ 89 (202)
+++||+.+++.+..++... +.|.+++|+||+|+|||++|+++|+.+.+... .+.+..+..
T Consensus 17 eiiGq~~~~~~L~~~~~~~-------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hccChHHHHHHHHHHHHhC-------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 6999999999887666532 25667999999999999999999999987310 000111111
Q ss_pred hh------cccccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCc
Q psy1695 90 KF------NSRIHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQN 159 (202)
Q Consensus 90 ~~------~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~ 159 (202)
+. ...+.......+. ++. .+.+.+ ..+++.|+||||+++++...++.|++.+++++ ..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id----~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-------~~ 157 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVD----DIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-------PH 157 (397)
T ss_pred HhcCCCCCeEeecccccCCHH----HHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-------CC
Confidence 11 1111111111111 112 222233 23456899999999999999999999999976 78
Q ss_pred eEEEEeeCcC
Q psy1695 160 TIFLFLSNSG 169 (202)
Q Consensus 160 ~~~Iltsn~~ 169 (202)
++||++++..
T Consensus 158 t~~Il~t~~~ 167 (397)
T PRK14955 158 AIFIFATTEL 167 (397)
T ss_pred eEEEEEeCCh
Confidence 8888888643
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.4e-15 Score=126.21 Aligned_cols=127 Identities=18% Similarity=0.282 Sum_probs=81.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS---- 93 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~---- 93 (202)
+++||+.+++.+..++... +.|.+++|+||||||||++|+++|+.+.+.... +.+..+..+...
T Consensus 15 divGq~~i~~~L~~~i~~~-------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKN-------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 5999999988776655532 245579999999999999999999998762111 111111211111
Q ss_pred --cccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 94 --RIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 94 --~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
.+.......+. .+ +.+.+... .+.+.|+||||++.++...++.|++.+++++ .+++||++||
T Consensus 88 v~el~aa~~~gid----~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------~~vv~Ilatt 155 (472)
T PRK14962 88 VIELDAASNRGID----EI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------SHVVFVLATT 155 (472)
T ss_pred cEEEeCcccCCHH----HH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-------CcEEEEEEeC
Confidence 11111111111 11 12222222 2345899999999999999999999999976 7888888887
Q ss_pred c
Q psy1695 168 S 168 (202)
Q Consensus 168 ~ 168 (202)
.
T Consensus 156 n 156 (472)
T PRK14962 156 N 156 (472)
T ss_pred C
Confidence 4
No 48
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8.2e-15 Score=128.90 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=87.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc---
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS--- 93 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~--- 93 (202)
++++||+.+++.+.+++... +.++++||+||+|||||++|+.+|+.+.+.... +.+..+..+...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM 88 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 36999999999888887752 145579999999999999999999999873211 111122222111
Q ss_pred ---cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 94 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 94 ---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.......+... ..+...+...-..+++.|+||||+++|+...++.|++.+++++ .+++||++|+..
T Consensus 89 dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-------~~~ifIlatt~~ 159 (559)
T PRK05563 89 DVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-------AHVIFILATTEP 159 (559)
T ss_pred CeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-------CCeEEEEEeCCh
Confidence 1111110111101 1122222222223456999999999999999999999999987 889999988654
No 49
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=7.7e-15 Score=129.45 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=87.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc----------Cccchhhhh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----------GTSRFVHKF 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~----------~~~~~~~~~ 91 (202)
++++||+.+++.+.+++... +.|.++||+||+|+|||++|+++|+.+.+....+ .+..+..+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~ 96 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIM 96 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHh
Confidence 36999999999988877642 2566899999999999999999999998732111 011111111
Q ss_pred ccccc---C-CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695 92 NSRIH---F-PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 163 (202)
Q Consensus 92 ~~~~~---~-~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I 163 (202)
-..+. . ...+..+ . +++. .+.+.+. ..++.|+||||++.++...+|.|++.||+++ .++.||
T Consensus 97 ~g~h~Dv~e~~a~s~~g-v-d~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-------~~~~fI 166 (598)
T PRK09111 97 EGRHVDVLEMDAASHTG-V-DDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHVKFI 166 (598)
T ss_pred cCCCCceEEecccccCC-H-HHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-------CCeEEE
Confidence 11100 0 0011111 1 1111 2222232 2346899999999999999999999999987 889999
Q ss_pred EeeCcChH
Q psy1695 164 FLSNSGGT 171 (202)
Q Consensus 164 ltsn~~~~ 171 (202)
|+|+...+
T Consensus 167 l~tte~~k 174 (598)
T PRK09111 167 FATTEIRK 174 (598)
T ss_pred EEeCChhh
Confidence 99865544
No 50
>KOG2004|consensus
Probab=99.61 E-value=3.5e-15 Score=130.19 Aligned_cols=147 Identities=17% Similarity=0.276 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHH-hHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKN-HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 88 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~-~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 88 (202)
.+++.+.++.|+++-+|-+++++.+.+.+.= .+.+.. ++..+.|+||||+|||++|+.||+.|.+ .|.
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~---qGkIlCf~GPPGVGKTSI~kSIA~ALnR--------kFf 467 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV---QGKILCFVGPPGVGKTSIAKSIARALNR--------KFF 467 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC---CCcEEEEeCCCCCCcccHHHHHHHHhCC--------ceE
Confidence 3588999999999999999999999988874 343322 4557999999999999999999999866 455
Q ss_pred hhhcc------cccCCCCchhHHHHHHhHHHHHHhhhhCC--ceEEEEecCCCCCh----hHHHHHHHhcccCc---ccc
Q psy1695 89 HKFNS------RIHFPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPK----GLLDVIIPFIDHHA---VYN 153 (202)
Q Consensus 89 ~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~----~~~~~L~~~le~~~---~~~ 153 (202)
++... ++.+....|++ .+.+.+.+.+..+. .++++|||+||+.. +-..+|+.+||.-+ +.+
T Consensus 468 RfSvGG~tDvAeIkGHRRTYVG----AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlD 543 (906)
T KOG2004|consen 468 RFSVGGMTDVAEIKGHRRTYVG----AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLD 543 (906)
T ss_pred EEeccccccHHhhcccceeeec----cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhh
Confidence 54332 22233333443 45666666676654 38999999999975 35788999998643 222
Q ss_pred -----cccCCceEEEEeeCcChH
Q psy1695 154 -----QISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 154 -----~~~~~~~~~Iltsn~~~~ 171 (202)
.+|.+++.||.|+|....
T Consensus 544 HYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 544 HYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred hccccccchhheEEEEecccccc
Confidence 259999999999998643
No 51
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.2e-14 Score=126.14 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=85.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhh------h
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHK------F 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~------~ 91 (202)
+++||+.+++.+..++... +.|.+++|+||+|+|||++|+++++.+.+..... .+..+... +
T Consensus 15 eiiGqe~v~~~L~~~I~~g-------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 5999999998888777532 2565789999999999999999999998631111 01111111 1
Q ss_pred cccccCCCCchhHHHHHHhHHHHHH---hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIIS---NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~---~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
...+.......+. .+...+.. .-..+++.|+||||+++|+.++++.|++.||+++ .++.||++++.
T Consensus 88 v~eldaas~~gId----~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-------~~t~FIL~ttd 156 (535)
T PRK08451 88 IIEMDAASNRGID----DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-------SYVKFILATTD 156 (535)
T ss_pred EEEeccccccCHH----HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-------CceEEEEEECC
Confidence 1111111111111 12222211 1112456899999999999999999999999987 88999999976
Q ss_pred C
Q psy1695 169 G 169 (202)
Q Consensus 169 ~ 169 (202)
.
T Consensus 157 ~ 157 (535)
T PRK08451 157 P 157 (535)
T ss_pred h
Confidence 4
No 52
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.8e-14 Score=126.12 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=85.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhh------
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKF------ 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~------ 91 (202)
+++||+.+++.+.+++... +.|.+++|+||+|+|||++|+.+|+.+.|.... +.+..+..+.
T Consensus 17 dIIGQe~iv~~L~~aI~~~-------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 5899999998888776532 245579999999999999999999999873111 1111111111
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
...+.......+...++ +...+...-..+++.|+||||++.|+..+++.|++.|++++ .+++||++|+..
T Consensus 90 iieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-------~~tvfIL~Tt~~ 159 (605)
T PRK05896 90 IVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-------KHVVFIFATTEF 159 (605)
T ss_pred eEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-------CcEEEEEECCCh
Confidence 11111111111211111 11111111122346899999999999999999999999987 789999998754
No 53
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.1e-14 Score=126.99 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=85.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-------------CcCccchh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-------------DKGTSRFV 88 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-------------~~~~~~~~ 88 (202)
++++||+.+++.+.+++... +.|.+++|+||+|||||++|+.+|+.+.+... .|.+..+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 36999999999887766532 25667999999999999999999999988311 11111111
Q ss_pred hhh------cccccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695 89 HKF------NSRIHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ 158 (202)
Q Consensus 89 ~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~ 158 (202)
.+. ...+.......+. ++. .+.+.+ ..+++.|+||||+++++...++.|++.|++++ .
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd----~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-------~ 156 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVD----DIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-------P 156 (620)
T ss_pred HHhccCCCCeEEecccccCCHH----HHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-------C
Confidence 111 1111111111111 112 122222 23456899999999999999999999999987 7
Q ss_pred ceEEEEeeCcC
Q psy1695 159 NTIFLFLSNSG 169 (202)
Q Consensus 159 ~~~~Iltsn~~ 169 (202)
+++||++++..
T Consensus 157 ~tv~IL~t~~~ 167 (620)
T PRK14954 157 HAIFIFATTEL 167 (620)
T ss_pred CeEEEEEeCCh
Confidence 88999988643
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.59 E-value=5.3e-15 Score=121.97 Aligned_cols=110 Identities=23% Similarity=0.325 Sum_probs=70.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+..+.. ...+++.+... ...+++||||||||||++|+.||..... +|..+... ..
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~~----~l~SmIl~GPPG~GKTTlA~liA~~~~~--------~f~~~sAv------~~ 84 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEAG----HLHSMILWGPPGTGKTTLARLIAGTTNA--------AFEALSAV------TS 84 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhcC----CCceeEEECCCCCCHHHHHHHHHHhhCC--------ceEEeccc------cc
Confidence 358999887744 24444444432 3337999999999999999999998533 33333211 11
Q ss_pred hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
.+...++. ...-..........|+|+|||++++...|+.|++.+|+|.+
T Consensus 85 gvkdlr~i-~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i 133 (436)
T COG2256 85 GVKDLREI-IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI 133 (436)
T ss_pred cHHHHHHH-HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE
Confidence 11111111 11111122234468999999999999999999999999864
No 55
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.7e-14 Score=126.79 Aligned_cols=134 Identities=14% Similarity=0.184 Sum_probs=86.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-C----cCccchhhhhc-----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-D----KGTSRFVHKFN----- 92 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~----~~~~~~~~~~~----- 92 (202)
+|+||+.+++.+.+++... +.+.++||+||+|||||++|+.+|+.+.+... . +.+..+..+..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 5899999988888777642 13457999999999999999999999987311 0 11111111111
Q ss_pred -ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 93 -SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 93 -~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
..+.......+...+ .+...+...-...++.||||||+|+|+...++.|++.||+.. .+++||++||....
T Consensus 90 v~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------~~~ifILaTt~~~k 161 (624)
T PRK14959 90 VVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------ARVTFVLATTEPHK 161 (624)
T ss_pred eEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------CCEEEEEecCChhh
Confidence 111111111111111 122222222223456899999999999999999999999976 78999999886544
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.9e-14 Score=118.50 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=86.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+.+++.+.+++.. .+.|++++|+||+|+|||++|+.+|+.+.+....+.+.++..+.. . ...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~--~---~~~ 71 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP--I---NKK 71 (313)
T ss_pred hhccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc--c---cCC
Confidence 3689999999998877753 225668999999999999999999999987311111122211111 0 111
Q ss_pred hhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.++ . +++.. +.+.+. .+++.|+|||++|+|+.+++|.|++.||+++ .+++||++|+..
T Consensus 72 ~i~-v-~~ir~-~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-------~~t~~il~~~~~ 133 (313)
T PRK05564 72 SIG-V-DDIRN-IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-------KGVFIILLCENL 133 (313)
T ss_pred CCC-H-HHHHH-HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCCh
Confidence 121 1 11222 222222 3345899999999999999999999999988 899999998643
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.5e-15 Score=121.41 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=98.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
+|=|-++.++.+.+++.--+.+|. +...|.++|||||||||||.+|+++|+... ..|+++..+.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgSElVq 223 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGSELVQ 223 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccHHHHH
Confidence 466788889999888876443332 134677899999999999999999999843 3566665554422
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt 165 (202)
.|+| -...+.+.++...+....+||||||||.. +.++|..++++|.+ .+|. ...|+-+|++
T Consensus 224 ---KYiG-EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q---lDGFD~~~nvKVI~A 296 (406)
T COG1222 224 ---KYIG-EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ---LDGFDPRGNVKVIMA 296 (406)
T ss_pred ---HHhc-cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh---ccCCCCCCCeEEEEe
Confidence 2222 12234566666667777799999999655 33689999998876 3443 3467889999
Q ss_pred eCcChHHHHHHHHHHHHhhhH
Q psy1695 166 SNSGGTEIMNTFLELRKSECI 186 (202)
Q Consensus 166 sn~~~~~i~~~~~~~~~~~~~ 186 (202)
||...- +-.+ +++.||.
T Consensus 297 TNR~D~-LDPA---LLRPGR~ 313 (406)
T COG1222 297 TNRPDI-LDPA---LLRPGRF 313 (406)
T ss_pred cCCccc-cChh---hcCCCcc
Confidence 987642 2222 3555554
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=2.8e-14 Score=119.42 Aligned_cols=133 Identities=13% Similarity=0.160 Sum_probs=88.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC---------------ccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---------------TSR 86 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---------------~~~ 86 (202)
.+++||+.+++.+.+++.+. +.|+++||+||+|+||+++|..+|+.+.+....+. +..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 46999999999998777752 25668999999999999999999999988421110 011
Q ss_pred hhhhhcc---cccC--C---CC-----chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 87 FVHKFNS---RIHF--P---NE-----NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 87 ~~~~~~~---~~~~--~---~~-----~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
+..+... ++.. + .. ..+. .++ .+.+.+.+. ...+.|+||||+|.|+...+|.|++.++++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~--Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVIT--VDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred HHHHHccCCCCeEEEeccccccccccccccc--HHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111101 1100 0 00 1111 111 222223322 234589999999999999999999999998
Q ss_pred cccccccCCceEEEEeeCcChH
Q psy1695 150 AVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 150 ~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+ .+++||++|+....
T Consensus 169 p-------~~~~~IL~t~~~~~ 183 (365)
T PRK07471 169 P-------ARSLFLLVSHAPAR 183 (365)
T ss_pred C-------CCeEEEEEECCchh
Confidence 7 78899998877653
No 59
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.9e-14 Score=125.25 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=86.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh------
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF------ 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~------ 91 (202)
+++||+.+++.+..++... +.|.+++|+||+|+|||++|+++|+.+.+... .+.+..+..+.
T Consensus 17 diiGqe~iv~~L~~~i~~~-------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 6999999999988777642 25557999999999999999999999987311 11111122211
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
...+.+.....+...++ +...+...-..+++.|+||||++.++..+++.|++.+++++ .+++||++|+..
T Consensus 90 v~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-------~~~vfI~~tte~ 159 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-------PYIVFIFATTEV 159 (563)
T ss_pred eEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-------CCEEEEEecCCh
Confidence 11111111111111111 11111111123456899999999999999999999999987 899999988553
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.7e-14 Score=124.02 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=84.0
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC----cCccchhhh------hc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSRFVHK------FN 92 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~----~~~~~~~~~------~~ 92 (202)
+++||+.+++.+..++... +.|+.++|+||||||||++|+++|+.+.+..+. +.+..+..+ +.
T Consensus 15 dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 5999999999888777652 245568999999999999999999999862111 111111111 11
Q ss_pred ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 93 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
..+.......+...+ ++...+...-...++.|+||||++.++...++.|++.++++. .+++||+++|..
T Consensus 88 ~el~~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------~~t~~Il~t~~~ 156 (504)
T PRK14963 88 LEIDAASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------EHVIFILATTEP 156 (504)
T ss_pred EEecccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------CCEEEEEEcCCh
Confidence 111111111111111 111111111112356899999999999999999999999976 788888888754
No 61
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.3e-14 Score=116.90 Aligned_cols=130 Identities=14% Similarity=0.248 Sum_probs=86.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc--hhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR--FVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (202)
++++||+.+++.+..++... +.|.++||+||+|+||+++|.++|+.+.+....+.+.. +...+.++++...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~ 76 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEe
Confidence 47999999999998888753 24558999999999999999999999988321111100 0000111111000
Q ss_pred C------------------------chhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 100 E------------------------NHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 100 ~------------------------~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
+ ..++ .++ .+.+.+.+.. +++.|+|||++|+|+..++|.|++.||+++
T Consensus 77 p~~~~~g~~~~~~~~~~~~~~~~~~~~I~--id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp- 152 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKAPPQIR--LEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG- 152 (314)
T ss_pred ccccccccccchhhhhhccccccccccCc--HHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-
Confidence 0 0111 011 2233333433 345999999999999999999999999974
Q ss_pred cccccCCceEEEEeeCcC
Q psy1695 152 YNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 152 ~~~~~~~~~~~Iltsn~~ 169 (202)
+++||++|+..
T Consensus 153 -------~~~fILi~~~~ 163 (314)
T PRK07399 153 -------NGTLILIAPSP 163 (314)
T ss_pred -------CCeEEEEECCh
Confidence 56889988744
No 62
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.9e-14 Score=126.54 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=85.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-------cCccchhhhhccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-------KGTSRFVHKFNSR 94 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-------~~~~~~~~~~~~~ 94 (202)
.+++||+.+++.+..++.... .+.++||+||+|+|||++|+++|+.+.+.... +.+..+..+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC
Confidence 369999999999887777521 33479999999999999999999999883111 1111111111000
Q ss_pred ---ccCCCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 95 ---IHFPNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 95 ---~~~~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
+..... ...+ . +.+ +.+.+... .+++.|+||||+|+|+.++++.|++.||+++ .+++||++|
T Consensus 89 h~D~~ei~~~~~~~-v-d~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-------~~tvfIL~t 158 (620)
T PRK14948 89 ALDVIEIDAASNTG-V-DNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-------PRVVFVLAT 158 (620)
T ss_pred CccEEEEeccccCC-H-HHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------cCeEEEEEe
Confidence 000001 1111 1 111 22222222 2456899999999999999999999999987 789999998
Q ss_pred CcC
Q psy1695 167 NSG 169 (202)
Q Consensus 167 n~~ 169 (202)
+..
T Consensus 159 ~~~ 161 (620)
T PRK14948 159 TDP 161 (620)
T ss_pred CCh
Confidence 754
No 63
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.2e-14 Score=122.32 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=85.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhh----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKF---- 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~---- 91 (202)
++++||+.+++.+.+++... +.|.+++|+||+|+|||++|+.+|+.+.+.... +.+..+..+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 36999999999887777642 245579999999999999999999999873111 0011111111
Q ss_pred --cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 92 --NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
...+.+.....+...+ .+...+...-...++.|+||||+++++.+.++.|++.|++++ .+++||++||..
T Consensus 90 ~d~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-------~~~~~Il~t~~~ 161 (451)
T PRK06305 90 LDVLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-------QHVKFFLATTEI 161 (451)
T ss_pred CceEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-------CCceEEEEeCCh
Confidence 1111111111111111 111122111123456899999999999999999999999976 788899988644
No 64
>KOG0734|consensus
Probab=99.57 E-value=1.7e-14 Score=122.45 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=96.0
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 95 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 95 (202)
-++|-|-++|+..+.+.+. ++.+|. +.+-|.++||+||||||||.|||++|-+. ..+|.....+.+
T Consensus 303 F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--------~VPFF~~sGSEF 373 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--------GVPFFYASGSEF 373 (752)
T ss_pred cccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc--------CCCeEeccccch
Confidence 3578999999998866554 333332 14568899999999999999999998873 224433333322
Q ss_pred cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
. .-+++ ....-.+.+..+.+.+...||||||+|.... ..+|.|+--||.-. .....+||.
T Consensus 374 d---Em~VG-vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-----qNeGiIvig 444 (752)
T KOG0734|consen 374 D---EMFVG-VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-----QNEGIIVIG 444 (752)
T ss_pred h---hhhhc-ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC-----cCCceEEEe
Confidence 1 11222 0000023344444555558999999976642 23455554444322 223455566
Q ss_pred eeCcChHHHHHHHHHHHHhhh---------HHHHhccchhHHHhhcC
Q psy1695 165 LSNSGGTEIMNTFLELRKSEC---------IEFIFQCQPLKVYLKKL 202 (202)
Q Consensus 165 tsn~~~~~i~~~~~~~~~~~~---------~r~~~~~~~~~~~~~~~ 202 (202)
.||.. +.+..+ +.+.|| |++..|.+.|+.||+|+
T Consensus 445 ATNfp-e~LD~A---L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 445 ATNFP-EALDKA---LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred ccCCh-hhhhHH---hcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 66654 444444 345555 46777888899999985
No 65
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.57 E-value=4.4e-15 Score=126.68 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=97.4
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 91 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 91 (202)
.+..+.+.+++.++|++++++.+..++... . +++|.||||||||++|++++..+.. . ..|....
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag----~------hVLL~GpPGTGKT~LAraLa~~~~~---~---~~F~~~~ 73 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSG----E------SVFLLGPPGIAKSLIARRLKFAFQN---A---RAFEYLM 73 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccC----C------CEEEECCCChhHHHHHHHHHHHhcc---c---Ccceeee
Confidence 468899999999999999999887666532 1 6899999999999999999998543 1 1111111
Q ss_pred cccccCCCCchhHH--HHHHh-HHHHHHhhhhC---CceEEEEecCCCCChhHHHHHHHhcccCccccc---ccCCceEE
Q psy1695 92 NSRIHFPNENHVSL--YRLQL-TNWIISNVTAC---DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ---ISFQNTIF 162 (202)
Q Consensus 92 ~~~~~~~~~~~~~~--~~~~l-~~~~~~~l~~~---~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~---~~~~~~~~ 162 (202)
. .+. .+...++. ..... .+.+. ....+ ...++++|||.++++..++.|+++|+++.++.+ ......++
T Consensus 74 ~-~ft-tp~DLfG~l~i~~~~~~g~f~-r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfi 150 (498)
T PRK13531 74 T-RFS-TPEEVFGPLSIQALKDEGRYQ-RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLL 150 (498)
T ss_pred e-eec-CcHHhcCcHHHhhhhhcCchh-hhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEE
Confidence 1 000 00011110 00000 00110 01111 125899999999999999999999999887654 24444556
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhHHHHhccc
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECIEFIFQCQ 193 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~ 193 (202)
+.+||.-++ -.+++.+..+||.+++.
T Consensus 151 v~ATN~LPE-----~g~~leAL~DRFliri~ 176 (498)
T PRK13531 151 VTASNELPE-----ADSSLEALYDRMLIRLW 176 (498)
T ss_pred EEECCCCcc-----cCCchHHhHhhEEEEEE
Confidence 666664443 22345566667765543
No 66
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.56 E-value=2.6e-14 Score=117.75 Aligned_cols=131 Identities=14% Similarity=0.181 Sum_probs=87.0
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC----------------ccc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSR 86 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----------------~~~ 86 (202)
.++|++.+...+..+...+-. .|.++||+||||+|||++|.++|+.+++....+. ..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 467788887777766665432 4446999999999999999999999987321111 011
Q ss_pred hhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEE
Q psy1695 87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
++.++. +.........++ .+.+...... ++..|++|||+|.|+.++++.|++.+|+++ .++.|
T Consensus 76 ~lel~~-----s~~~~~~i~~~~-vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-------~~~~~ 142 (325)
T COG0470 76 FLELNP-----SDLRKIDIIVEQ-VRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-------KNTRF 142 (325)
T ss_pred eEEecc-----cccCCCcchHHH-HHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-------CCeEE
Confidence 222211 111111001111 2222222222 456999999999999999999999999988 99999
Q ss_pred EEeeCcChHH
Q psy1695 163 LFLSNSGGTE 172 (202)
Q Consensus 163 Iltsn~~~~~ 172 (202)
|++||...+.
T Consensus 143 il~~n~~~~i 152 (325)
T COG0470 143 ILITNDPSKI 152 (325)
T ss_pred EEEcCChhhc
Confidence 9999955443
No 67
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=2.2e-14 Score=130.21 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=101.7
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 89 (202)
+.++.+.++.|+++.+|++.+++.+.+.+........ . ++-.++|+||||+|||++++.+++.+.. ++.+
T Consensus 310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-~-~g~~i~l~GppG~GKTtl~~~ia~~l~~--------~~~~ 379 (784)
T PRK10787 310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK-I-KGPILCLVGPPGVGKTSLGQSIAKATGR--------KYVR 379 (784)
T ss_pred cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-C-CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEE
Confidence 4589999999999999999999999887775432211 1 2225899999999999999999998644 2222
Q ss_pred hhcccc------cCCCCchhHHHHHHhHHHHHHhhhhC--CceEEEEecCCCCChhH----HHHHHHhcccCc---ccc-
Q psy1695 90 KFNSRI------HFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKGL----LDVIIPFIDHHA---VYN- 153 (202)
Q Consensus 90 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~viiiDEid~~~~~~----~~~L~~~le~~~---~~~- 153 (202)
+.++.. .+....+.+ ...+.+...+... ..+|++|||+|++++.. ++.|+++++..+ +.+
T Consensus 380 i~~~~~~d~~~i~g~~~~~~g----~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 380 MALGGVRDEAEIRGHRRTYIG----SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred EEcCCCCCHHHhccchhccCC----CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecc
Confidence 222111 111111111 1112222222222 34799999999999865 589999999753 222
Q ss_pred ----cccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 154 ----QISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 154 ----~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
..|.++++||+|+|... +..++++
T Consensus 456 ~~~~~~dls~v~~i~TaN~~~--i~~aLl~ 483 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSMN--IPAPLLD 483 (784)
T ss_pred cccccccCCceEEEEcCCCCC--CCHHHhc
Confidence 25889999999999762 5555443
No 68
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-14 Score=116.22 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc---cCC-CCCce---EEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN---RYH-NTKAL---AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 85 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~---~~~-~~~pl---~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 85 (202)
..++++.|++.++||+.|++.+.-++.++... ... .+.-+ .+++.||+|+|||.||+.+|+.|.-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV-------- 123 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV-------- 123 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC--------
Confidence 57899999999999999999998888775321 110 11222 4999999999999999999999744
Q ss_pred chhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhC-------CceEEEEecCCCCCh--------------hHHHHHHH
Q psy1695 86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC-------DRAIFIFDEVDKFPK--------------GLLDVIIP 144 (202)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-------~~~viiiDEid~~~~--------------~~~~~L~~ 144 (202)
+|.-.+...+ +..+|++.-.+ .-+...+..+ ..++++||||||... .+|++|++
T Consensus 124 PFaiADATtL--TEAGYVGEDVE---NillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLK 198 (408)
T COG1219 124 PFAIADATTL--TEAGYVGEDVE---NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 198 (408)
T ss_pred Ceeeccccch--hhccccchhHH---HHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHH
Confidence 3433333332 23456663222 3333333333 348999999988743 58999999
Q ss_pred hcccCccc--------------ccccCCceEEEEeeCc
Q psy1695 145 FIDHHAVY--------------NQISFQNTIFLFLSNS 168 (202)
Q Consensus 145 ~le~~~~~--------------~~~~~~~~~~Iltsn~ 168 (202)
++|..... -.+|.+|..||.--..
T Consensus 199 iiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF 236 (408)
T COG1219 199 IIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAF 236 (408)
T ss_pred HHcCceeccCCCCCCCCCccceEEEcccceeEEecccc
Confidence 99853211 1147777777765543
No 69
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=2.7e-14 Score=118.30 Aligned_cols=132 Identities=14% Similarity=0.345 Sum_probs=86.7
Q ss_pred hhCCC-hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhhhc---
Q psy1695 22 QHVHG-QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFN--- 92 (202)
Q Consensus 22 ~~liG-q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~~~--- 92 (202)
..|+| |+.+++.+..++.. .+.|++++|+||+|+||+++|+.+|+.+.+..+.+ .+..+..+..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCC
Confidence 35777 88899888777653 22566799999999999999999999998742111 1111111111
Q ss_pred ccccC--CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 93 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 93 ~~~~~--~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
+++.. +....++ .+++. .+.+.+. .+++.|+||||+|+|+.+++|.|++.||+++ .+++||++|
T Consensus 78 pD~~~i~~~~~~i~--id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-------~~~~~Il~t 147 (329)
T PRK08058 78 PDVHLVAPDGQSIK--KDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-------GGTTAILLT 147 (329)
T ss_pred CCEEEeccccccCC--HHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-------CCceEEEEe
Confidence 11111 1111111 11222 2222222 3446899999999999999999999999988 899999999
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
+...
T Consensus 148 ~~~~ 151 (329)
T PRK08058 148 ENKH 151 (329)
T ss_pred CChH
Confidence 7543
No 70
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=3.2e-14 Score=112.68 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=86.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++.+||+++++.+.-.++....... ..-+++|+||||.|||++|..+|+++.. + ++... ++.-.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e---~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n------~k~ts----Gp~le 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGE---ALDHVLLFGPPGLGKTTLAHIIANELGV---N------LKITS----GPALE 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCC---CcCeEEeeCCCCCcHHHHHHHHHHHhcC---C------eEecc----ccccc
Confidence 3689999999999888887654432 3338999999999999999999999744 1 11111 11100
Q ss_pred hhHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccCccc--cc---------ccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---------~~~~~~~~Iltsn~~ 169 (202)
. .+.+...+.. .+.+|+|||||+++++.+-+.|.+.||...+- -+ .+...-++|-+|+..
T Consensus 90 K--------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 90 K--------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred C--------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 1 1222223322 24689999999999999999999999987642 11 366666777777654
Q ss_pred h
Q psy1695 170 G 170 (202)
Q Consensus 170 ~ 170 (202)
.
T Consensus 162 G 162 (332)
T COG2255 162 G 162 (332)
T ss_pred c
Confidence 4
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.4e-14 Score=123.74 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=84.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc------Cccchhhhhccc-
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK------GTSRFVHKFNSR- 94 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~------~~~~~~~~~~~~- 94 (202)
++++||+.+++.+..++... +.+.+++|+||+|+|||++|+.+++.+.+....+ .+..+..+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCC
Confidence 36999999999987777642 1455789999999999999999999998732111 011111111000
Q ss_pred --cc-CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 95 --IH-FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 95 --~~-~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
+. .......+ . ++ ...+.+.+. ...+.||||||+++++...++.|++.|++.+ .+++||++++
T Consensus 89 ~d~~~i~~~~~~~-v-d~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------~~tv~Il~t~ 158 (585)
T PRK14950 89 VDVIEMDAASHTS-V-DD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHAIFILATT 158 (585)
T ss_pred CeEEEEeccccCC-H-HH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------CCeEEEEEeC
Confidence 00 00001111 1 11 122222222 2346899999999999999999999999976 7889999886
Q ss_pred cCh
Q psy1695 168 SGG 170 (202)
Q Consensus 168 ~~~ 170 (202)
...
T Consensus 159 ~~~ 161 (585)
T PRK14950 159 EVH 161 (585)
T ss_pred Chh
Confidence 543
No 72
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=9.9e-14 Score=123.08 Aligned_cols=130 Identities=19% Similarity=0.267 Sum_probs=86.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc------CcCccchhhhh----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK------DKGTSRFVHKF---- 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~------~~~~~~~~~~~---- 91 (202)
++|+||+.+++.+.+++... +.|.++||+||+|+|||++|+.+|+.+.|... .+.+..+..+.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 36999999999988777642 25557999999999999999999999986311 11111111111
Q ss_pred --cccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 92 --NSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
...+.......+. ++.. +.+.+. .+++.|+||||+++++...++.|++.||+++ .+++||++
T Consensus 90 ~n~~~ld~~~~~~vd----~Ir~-li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-------~~tifIL~ 157 (614)
T PRK14971 90 YNIHELDAASNNSVD----DIRN-LIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-------SYAIFILA 157 (614)
T ss_pred CceEEecccccCCHH----HHHH-HHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------CCeEEEEE
Confidence 1111111111111 1222 222222 2346899999999999999999999999987 88999999
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
|+...
T Consensus 158 tt~~~ 162 (614)
T PRK14971 158 TTEKH 162 (614)
T ss_pred eCCch
Confidence 97543
No 73
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.6e-13 Score=118.84 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=84.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~~~ 97 (202)
+++||+.+++.+.+++... +.+.+++|+||+|+|||++|+.+|+.+.+.... +.+..+..+....+..
T Consensus 17 diiGq~~i~~~L~~~i~~~-------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HccChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 5999999999888777642 144478999999999999999999999862111 1111122221111000
Q ss_pred ---CCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 98 ---PNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 98 ---~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
-.. ...+ ... .+.+.+.+. .+.+.|+||||++.++..+++.|++.+++++ .+++||++|+..
T Consensus 90 ~~eidaas~~g-vd~--ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-------~~~v~Il~tt~~ 159 (486)
T PRK14953 90 LIEIDAASNRG-IDD--IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-------PRTIFILCTTEY 159 (486)
T ss_pred EEEEeCccCCC-HHH--HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEECCH
Confidence 000 1111 111 122333333 2345899999999999999999999999987 788999888643
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=1.6e-13 Score=114.34 Aligned_cols=132 Identities=16% Similarity=0.272 Sum_probs=87.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcC------ccchhhh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKG------TSRFVHK 90 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~------~~~~~~~ 90 (202)
..++||+.+.+.+..++... +.|..++|+||+|+|||++|+.+|+.+.+... .+. +..+..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 46999999999998888743 24557999999999999999999999987210 100 0111111
Q ss_pred hcc---c---ccCC--CC-----chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccc
Q psy1695 91 FNS---R---IHFP--NE-----NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN 153 (202)
Q Consensus 91 ~~~---~---~~~~--~~-----~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~ 153 (202)
... + +..+ .. ..++ .++ ...+.+.+. .+.+.|+||||+|.|+...+|.|++.+|+++
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~--vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp--- 169 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAIT--VDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP--- 169 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCC--HHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC---
Confidence 110 0 1001 00 1111 112 223333333 3456899999999999999999999999987
Q ss_pred cccCCceEEEEeeCcCh
Q psy1695 154 QISFQNTIFLFLSNSGG 170 (202)
Q Consensus 154 ~~~~~~~~~Iltsn~~~ 170 (202)
.+++||++|+...
T Consensus 170 ----~~~~fiLit~~~~ 182 (351)
T PRK09112 170 ----ARALFILISHSSG 182 (351)
T ss_pred ----CCceEEEEECChh
Confidence 7889999987654
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=3.2e-13 Score=112.86 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=83.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhh------
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKF------ 91 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~------ 91 (202)
+++||+.+++.+..++... +.|.+++|+||+|+|||++|+.+++.+.+.... +.+..+..+.
T Consensus 15 ~iig~~~~~~~l~~~~~~~-------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 6899999999888777532 245579999999999999999999998763110 0011111111
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
...+.......+. . ...+.+.+.. .+..||+|||+|.++...++.|++.+++++ .+++||+++|
T Consensus 88 ~~~~~~~~~~~~~----~-~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-------~~~~lIl~~~ 155 (355)
T TIGR02397 88 VIEIDAASNNGVD----D-IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-------EHVVFILATT 155 (355)
T ss_pred EEEeeccccCCHH----H-HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-------cceeEEEEeC
Confidence 0011111001111 1 1122222222 345899999999999999999999999876 7888889886
Q ss_pred cCh
Q psy1695 168 SGG 170 (202)
Q Consensus 168 ~~~ 170 (202)
...
T Consensus 156 ~~~ 158 (355)
T TIGR02397 156 EPH 158 (355)
T ss_pred CHH
Confidence 543
No 76
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.50 E-value=1.6e-13 Score=118.63 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=77.3
Q ss_pred hCCChHHHHHHHHHHHHHhH---hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 23 HVHGQELAISHICGALKNHF---QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~---~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
+|-|.+.+++.+.+....+. .... -..|.++||+||||||||++|+++|+.+.. +++.+..+.+...
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~--------~~~~l~~~~l~~~- 298 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQL--------PLLRLDVGKLFGG- 298 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEEhHHhccc-
Confidence 57788888887776443321 1111 235668999999999999999999999532 4444444433222
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
+++..... ...+..........||+|||+|++.. .+.+.++..|++.. .++++|.|||
T Consensus 299 --~vGese~~-l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------~~V~vIaTTN 368 (489)
T CHL00195 299 --IVGESESR-MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-------SPVFVVATAN 368 (489)
T ss_pred --ccChHHHH-HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-------CceEEEEecC
Confidence 22211111 22233333444558999999987633 13455666666533 5677888888
Q ss_pred cCh
Q psy1695 168 SGG 170 (202)
Q Consensus 168 ~~~ 170 (202)
...
T Consensus 369 ~~~ 371 (489)
T CHL00195 369 NID 371 (489)
T ss_pred Chh
Confidence 654
No 77
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.2e-13 Score=113.56 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=81.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccch--hhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF--VHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~~~~~~~~~~~ 99 (202)
++++||+.+++.+.+.+... ..|.+++|+||+|+|||++|+++++.+.+ .+..... .......+....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-------~~~~~~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-------HLAQALLFCGPRGVGKTTCARILARKINQ---PGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCCcceEEecccc
Confidence 35899999998887777642 24557999999999999999999999876 2211110 011111111111
Q ss_pred CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 100 ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
..... . ...+.+.+. ..+..||++||++.++...++.|++.+++++ .+++||++++..
T Consensus 87 ~~~~~----~-i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------~~~~~Il~~~~~ 148 (367)
T PRK14970 87 NNSVD----D-IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------AHAIFILATTEK 148 (367)
T ss_pred CCCHH----H-HHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-------CceEEEEEeCCc
Confidence 01111 1 111112111 2345899999999999999999999999865 678888888754
No 78
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.49 E-value=2e-13 Score=118.10 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=84.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC--cCccchhhhhccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVHKFNSR 94 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~ 94 (202)
+++.|.+..++.+.+++...+.++. +-..|.+++|+||||||||++|+++|+.+...... .....++.+..+.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3588999999999999865322211 02245579999999999999999999997541000 0011122221111
Q ss_pred ccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCC
Q psy1695 95 IHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQ 158 (202)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~ 158 (202)
+.. .+.+..... ...+.... ......|+||||+|.+-. .+.+.|+..|+.-. ...
T Consensus 262 Ll~---kyvGete~~-ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~-----~~~ 332 (512)
T TIGR03689 262 LLN---KYVGETERQ-IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE-----SLD 332 (512)
T ss_pred hcc---cccchHHHH-HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----cCC
Confidence 111 122211111 12222222 223457999999987632 13456666665421 235
Q ss_pred ceEEEEeeCcChHHHHHHHHHHHHhhhHHH
Q psy1695 159 NTIFLFLSNSGGTEIMNTFLELRKSECIEF 188 (202)
Q Consensus 159 ~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~ 188 (202)
+.++|.+||.... +..+ +++.||.+.
T Consensus 333 ~ViVI~ATN~~d~-LDpA---LlRpGRfD~ 358 (512)
T TIGR03689 333 NVIVIGASNREDM-IDPA---ILRPGRLDV 358 (512)
T ss_pred ceEEEeccCChhh-CCHh---hcCccccce
Confidence 7888999987542 3333 345555433
No 79
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.49 E-value=1.9e-13 Score=113.40 Aligned_cols=141 Identities=11% Similarity=0.234 Sum_probs=84.2
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|..+|+...+. +++||+.+++.+.+++.. + ..| +++|+||||||||++|+++++.+.+ .+....
T Consensus 5 w~~ky~P~~~~-----~~~g~~~~~~~L~~~~~~----~---~~~-~lll~Gp~GtGKT~la~~~~~~l~~---~~~~~~ 68 (337)
T PRK12402 5 WTEKYRPALLE-----DILGQDEVVERLSRAVDS----P---NLP-HLLVQGPPGSGKTAAVRALARELYG---DPWENN 68 (337)
T ss_pred hHHhhCCCcHH-----HhcCCHHHHHHHHHHHhC----C---CCc-eEEEECCCCCCHHHHHHHHHHHhcC---cccccc
Confidence 33445555543 588999998888776653 1 123 5899999999999999999999876 221112
Q ss_pred hhhhhcccccC-------CCCchhHHH----------HHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHh
Q psy1695 87 FVHKFNSRIHF-------PNENHVSLY----------RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPF 145 (202)
Q Consensus 87 ~~~~~~~~~~~-------~~~~~~~~~----------~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~ 145 (202)
++.++...+.. ..+.....+ .+.+...+..... ..+..+|||||++.+++..++.|..+
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~ 148 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI 148 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH
Confidence 22222221110 001000000 0011111111111 13357999999999999999999999
Q ss_pred cccCcccccccCCceEEEEeeCcCh
Q psy1695 146 IDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 146 le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
++... .++.||++++...
T Consensus 149 le~~~-------~~~~~Il~~~~~~ 166 (337)
T PRK12402 149 MEQYS-------RTCRFIIATRQPS 166 (337)
T ss_pred HHhcc-------CCCeEEEEeCChh
Confidence 98765 5677888887543
No 80
>PRK12377 putative replication protein; Provisional
Probab=99.49 E-value=2e-13 Score=108.49 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 105 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (202)
||..++..+...+..+.... .+++|+||||||||++|.++++.+.. .+....++.. ..+.... ...
T Consensus 82 ~~~~a~~~a~~~a~~~~~~~------~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~--~~l~~~l---~~~ 147 (248)
T PRK12377 82 GQRYALSQAKSIADELMTGC------TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTV--PDVMSRL---HES 147 (248)
T ss_pred hHHHHHHHHHHHHHHHHhcC------CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEH--HHHHHHH---HHH
Confidence 55556666666655554322 26899999999999999999999876 4322222211 1110000 000
Q ss_pred HHHH-hHHHHHHhhhhCCceEEEEecC--CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 106 YRLQ-LTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 106 ~~~~-l~~~~~~~l~~~~~~viiiDEi--d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
+... ....+...+ ...++|||||+ +..++..++.|.++++... .+...+|+|||+..+.+.+.+.
T Consensus 148 ~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~------~~~~ptiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 148 YDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT------ASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred HhccchHHHHHHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH------hcCCCEEEEcCCCHHHHHHHhh
Confidence 0000 011122222 23589999999 6667788889999999753 0346789999999988876544
No 81
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.49 E-value=4.8e-13 Score=110.20 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|+.+|+...+. +++||+.+++.+...+.. .+.|..++|+||+|+|||++|+++++.+.. +
T Consensus 11 w~~kyrP~~~~-----~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~--------~ 70 (316)
T PHA02544 11 WEQKYRPSTID-----ECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA--------E 70 (316)
T ss_pred ceeccCCCcHH-----HhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc--------c
Confidence 44566666654 589999998888777652 124556888999999999999999998532 2
Q ss_pred hhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
+..++... .. .......+.......-...+.+|+||||+|.+ ..+.++.|..++++.. .++.||+|
T Consensus 71 ~~~i~~~~-----~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-------~~~~~Ilt 137 (316)
T PHA02544 71 VLFVNGSD-----CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-------KNCSFIIT 137 (316)
T ss_pred ceEeccCc-----cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-------CCceEEEE
Confidence 22222221 11 11111111111111101134689999999999 6678888988899865 77899999
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
||...
T Consensus 138 ~n~~~ 142 (316)
T PHA02544 138 ANNKN 142 (316)
T ss_pred cCChh
Confidence 98653
No 82
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=5e-13 Score=109.97 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---cccc-
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---SRIH- 96 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~~~~- 96 (202)
.+..+.+.+.+++.+ .+.|++++|+||+|+||+++|+.+|+.+.|..+. |.+..+..+.. +++.
T Consensus 6 W~~~~~~~l~~~~~~-------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 6 WLQPTYQQITQAFQQ-------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred chHHHHHHHHHHHHc-------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 344445555444443 2256689999999999999999999999984211 11111211111 1111
Q ss_pred -CC-CCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 97 -FP-NENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 97 -~~-~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.+ ....++ .++ .+.+.+.+ ..+++.|+|||++|+|+..++|.|++.||+++ .+++||++|+...
T Consensus 79 i~p~~~~~I~--id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------~~~~fiL~t~~~~ 148 (325)
T PRK06871 79 LEPIDNKDIG--VDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-------PNTYFLLQADLSA 148 (325)
T ss_pred EccccCCCCC--HHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChH
Confidence 01 111222 111 22233333 33456999999999999999999999999998 8999999997643
No 83
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=3.6e-13 Score=111.63 Aligned_cols=111 Identities=8% Similarity=0.117 Sum_probs=74.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---ccccC--CCC--chhHHHHHHhHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---SRIHF--PNE--NHVSLYRLQLTNWIISN 117 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~~~~~--~~~--~~~~~~~~~l~~~~~~~ 117 (202)
.|++++|+||+|+||+++|.++|+.+.|..+. |.+..+..+.. +++.. +.. ..++ .++ .+.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~--idq-iR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG--VDA-VREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC--HHH-HHHHHHH
Confidence 67789999999999999999999999884221 11111222211 11111 111 1122 112 2233333
Q ss_pred hh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 118 VT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 118 l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+. .+++.|+|||++|+|+.++.|.|++.||+++ .+++||++|+...
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~ 149 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------ENTWFFLACREPA 149 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence 33 3456999999999999999999999999998 9999999997643
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=5.7e-13 Score=109.63 Aligned_cols=138 Identities=19% Similarity=0.321 Sum_probs=87.7
Q ss_pred cccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695 6 KFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 85 (202)
Q Consensus 6 ~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 85 (202)
-|+.+|++..+. +++||+.+++.+..++.. +. .| +++|+||+|+|||++++.+++.+.+ .+...
T Consensus 6 ~w~~kyrP~~~~-----~~~g~~~~~~~l~~~i~~----~~---~~-~~ll~G~~G~GKt~~~~~l~~~l~~---~~~~~ 69 (319)
T PRK00440 6 IWVEKYRPRTLD-----EIVGQEEIVERLKSYVKE----KN---MP-HLLFAGPPGTGKTTAALALARELYG---EDWRE 69 (319)
T ss_pred ccchhhCCCcHH-----HhcCcHHHHHHHHHHHhC----CC---CC-eEEEECCCCCCHHHHHHHHHHHHcC---Ccccc
Confidence 356667776654 488999999888777653 11 33 5799999999999999999999866 32111
Q ss_pred chhhhhcccccCCCCchhHHHHHHhHHHHHHh-hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISN-VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
.++..+.+ ...........+....... +...+..+++|||++.++...++.|+++++... .++.+|+
T Consensus 70 ~~i~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------~~~~lIl 137 (319)
T PRK00440 70 NFLELNAS-----DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------QNTRFIL 137 (319)
T ss_pred ceEEeccc-----cccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------CCCeEEE
Confidence 22222111 1111110111111111110 111345799999999999999999999998865 6778899
Q ss_pred eeCcChH
Q psy1695 165 LSNSGGT 171 (202)
Q Consensus 165 tsn~~~~ 171 (202)
++|....
T Consensus 138 ~~~~~~~ 144 (319)
T PRK00440 138 SCNYSSK 144 (319)
T ss_pred EeCCccc
Confidence 8886543
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.47 E-value=2.7e-13 Score=97.17 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=68.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCC
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVD 132 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid 132 (202)
++|+||||||||++|+.+|+.+.. +++.+....+....... ....+...+.. ..... ..|++|||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~--------~~~~i~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF--------PFIEIDGSELISSYAGD---SEQKIRDFFKK-AKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS--------EEEEEETTHHHTSSTTH---HHHHHHHHHHH-HHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhccc--------ccccccccccccccccc---ccccccccccc-ccccccceeeeeccch
Confidence 589999999999999999999632 34444444433221111 22222333333 33333 5899999999
Q ss_pred CCChhH-----------HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 133 KFPKGL-----------LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 133 ~~~~~~-----------~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
.+.+.. .+.|+..+++... ...+.++|+|||. .+.+.+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~~~~~~vI~ttn~-~~~i~~~ 118 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSS----KNSRVIVIATTNS-PDKIDPA 118 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTT----TSSSEEEEEEESS-GGGSCHH
T ss_pred hcccccccccccccccccceeeeccccccc----ccccceeEEeeCC-hhhCCHh
Confidence 998765 7888888887541 1246899999998 4444443
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.47 E-value=2.1e-13 Score=115.43 Aligned_cols=134 Identities=15% Similarity=0.176 Sum_probs=81.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|.+.+++.+.+.+...+.++. +...|.+++|+||||||||++|+++|+.+.. .++.+..+.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--------~~i~v~~~~l~ 202 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSELV 202 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--------CEEEeehHHHh
Confidence 4688999999999988865433211 1235668999999999999999999998533 34444333221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.. +++.. ......+.+........||+|||+|.+ +..++..+.+++..-.- ..+..++.+|+|
T Consensus 203 ~~---~~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~~~~~v~VI~a 276 (389)
T PRK03992 203 QK---FIGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG--FDPRGNVKIIAA 276 (389)
T ss_pred Hh---hccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc--cCCCCCEEEEEe
Confidence 11 11101 111223333334444579999999987 24456666666643110 012357888999
Q ss_pred eCcC
Q psy1695 166 SNSG 169 (202)
Q Consensus 166 sn~~ 169 (202)
||..
T Consensus 277 Tn~~ 280 (389)
T PRK03992 277 TNRI 280 (389)
T ss_pred cCCh
Confidence 9875
No 87
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=5.5e-13 Score=110.27 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=74.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccc---c--CCCC--chhHHHHHHhHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRI---H--FPNE--NHVSLYRLQLTNWIISN 117 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~---~--~~~~--~~~~~~~~~l~~~~~~~ 117 (202)
.|++++|+||+|+||+++|+.+|+.+.+..+. |.+..+..+....+ . .+.. ..++ .++ .+.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~--id~-iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK--VDQ-VRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC--HHH-HHHHHHH
Confidence 67689999999999999999999999984211 11122222211111 0 0110 1122 112 2223333
Q ss_pred hh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 118 VT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 118 l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+. .+++.|+|||++|+|+.+++|.|++.||+++ .+++||++|+....
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------~~~~fiL~t~~~~~ 148 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-------GDTVLLLISHQPSR 148 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-------CCeEEEEEECChhh
Confidence 33 3456899999999999999999999999988 89999999987543
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=4.7e-13 Score=116.30 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=87.0
Q ss_pred cccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695 6 KFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 85 (202)
Q Consensus 6 ~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 85 (202)
.|+.+|+...+. +++||+.+++.+..++..+..+. .+.+++|+||||||||++|+++|+.+..
T Consensus 3 ~W~eKyrP~~l~-----dlvg~~~~~~~l~~~l~~~~~g~----~~~~lLL~GppG~GKTtla~ala~el~~-------- 65 (482)
T PRK04195 3 PWVEKYRPKTLS-----DVVGNEKAKEQLREWIESWLKGK----PKKALLLYGPPGVGKTSLAHALANDYGW-------- 65 (482)
T ss_pred CchhhcCCCCHH-----HhcCCHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHcCC--------
Confidence 366677777775 49999999999999988876331 2447999999999999999999998532
Q ss_pred chhhhhcccccCCCCchhHHHHHHhHHHHHHhh-----hhCCceEEEEecCCCCCh----hHHHHHHHhcccCccccccc
Q psy1695 86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV-----TACDRAIFIFDEVDKFPK----GLLDVIIPFIDHHAVYNQIS 156 (202)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-----~~~~~~viiiDEid~~~~----~~~~~L~~~le~~~~~~~~~ 156 (202)
.++.++.+.. .... .+...+.... ...+..||||||+|.++. ..++.|+.+++.
T Consensus 66 ~~ielnasd~-----r~~~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-------- 128 (482)
T PRK04195 66 EVIELNASDQ-----RTAD----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-------- 128 (482)
T ss_pred CEEEEccccc-----ccHH----HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--------
Confidence 2222222211 0000 1111111111 112468999999999976 567888888886
Q ss_pred CCceEEEEeeCcChH
Q psy1695 157 FQNTIFLFLSNSGGT 171 (202)
Q Consensus 157 ~~~~~~Iltsn~~~~ 171 (202)
.+..+|+++|....
T Consensus 129 -~~~~iIli~n~~~~ 142 (482)
T PRK04195 129 -AKQPIILTANDPYD 142 (482)
T ss_pred -CCCCEEEeccCccc
Confidence 45567788876543
No 89
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=8.1e-13 Score=109.07 Aligned_cols=139 Identities=8% Similarity=0.083 Sum_probs=82.4
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhh----hhCCc
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV----TACDR 123 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~ 123 (202)
-+.|+.++|+||||||||.+|+++|+.+.. +++.+..+++.....+... ..+...+..+- .....
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~--------~~i~vsa~eL~sk~vGEsE---k~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI--------EPIVMSAGELESENAGEPG---KLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC--------CeEEEEHHHhhcCcCCcHH---HHHHHHHHHHHHHhhccCCC
Confidence 457889999999999999999999999633 4555555555444333322 22222222221 12335
Q ss_pred eEEEEecCCCCChh-----------H-HHHHHHhcccCccc-------ccccCCceEEEEeeCcChHHHHHHHHHHHHhh
Q psy1695 124 AIFIFDEVDKFPKG-----------L-LDVIIPFIDHHAVY-------NQISFQNTIFLFLSNSGGTEIMNTFLELRKSE 184 (202)
Q Consensus 124 ~viiiDEid~~~~~-----------~-~~~L~~~le~~~~~-------~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~ 184 (202)
.||||||||..-+. + ...|+.++|..... .......+.+|.|||.... +-.+ +++.|
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-LDpA---LlRpG 289 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-LYAP---LIRDG 289 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-CCHh---HcCCC
Confidence 89999999866431 1 24677777753211 1123466788888877643 2222 35555
Q ss_pred hH-------HHHhccchhHHHhhc
Q psy1695 185 CI-------EFIFQCQPLKVYLKK 201 (202)
Q Consensus 185 ~~-------r~~~~~~~~~~~~~~ 201 (202)
|. ...-++..|+.++|+
T Consensus 290 RfDk~i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 290 RMEKFYWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred CCCceeCCCCHHHHHHHHHHHhcc
Confidence 54 335555567766664
No 90
>KOG0730|consensus
Probab=99.45 E-value=3.2e-13 Score=117.20 Aligned_cols=162 Identities=16% Similarity=0.192 Sum_probs=98.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|+++.+..+.+++..-+.++. ..+.|.++|||||||||||++|+++|++... +|+.+-...+..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--------nFlsvkgpEL~s 506 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--------NFLSVKGPELFS 506 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--------CeeeccCHHHHH
Confidence 456699999999888876433322 1246678999999999999999999999433 444443333322
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
. +++. .+.....++...+++...|+||||||.+.. .+++.|+.-|+... ...++++|..|
T Consensus 507 k---~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----~~k~V~ViAAT 577 (693)
T KOG0730|consen 507 K---YVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----ALKNVLVIAAT 577 (693)
T ss_pred H---hcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-----ccCcEEEEecc
Confidence 1 2221 122233444444555559999999976533 34566666655422 22466666666
Q ss_pred CcChHHHHHHHHH------HHHhhhHHHHhccchhHHHhhcC
Q psy1695 167 NSGGTEIMNTFLE------LRKSECIEFIFQCQPLKVYLKKL 202 (202)
Q Consensus 167 n~~~~~i~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~ 202 (202)
|.. +.|..++++ +.--+-++..-++..||.++||.
T Consensus 578 NRp-d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 578 NRP-DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred CCh-hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 654 444444331 22233346667777788888874
No 91
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=1.1e-12 Score=107.73 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=83.1
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--Cccchhhhh---cccccCC
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKF---NSRIHFP 98 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~---~~~~~~~ 98 (202)
...|..+.+.+..++.. .+.|++++|+||+|+||+++|..+|+.+.+....+ .+..+..+. -+++..-
T Consensus 6 yPW~~~~~~~l~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 6 SPWQQRAYDQTVAALDA-------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred cccHHHHHHHHHHHHHc-------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 34566666666655543 23676899999999999999999999999832111 000110010 0111100
Q ss_pred --CCc--------hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 99 --NEN--------HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 99 --~~~--------~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
.+. .++ .++ .+.+.+.+.. +++.|+|||++|+|+.+++|.|++.||+++ .+++||+
T Consensus 79 ~~~p~~~~~k~~~~I~--idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~~~fiL 148 (319)
T PRK08769 79 SFIPNRTGDKLRTEIV--IEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-------PGRYLWL 148 (319)
T ss_pred ecCCCccccccccccc--HHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-------CCCeEEE
Confidence 010 111 122 2233333333 345899999999999999999999999998 8999999
Q ss_pred eeCcChH
Q psy1695 165 LSNSGGT 171 (202)
Q Consensus 165 tsn~~~~ 171 (202)
+|+....
T Consensus 149 ~~~~~~~ 155 (319)
T PRK08769 149 ISAQPAR 155 (319)
T ss_pred EECChhh
Confidence 9986543
No 92
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=6.4e-14 Score=116.17 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=82.3
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 92 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 92 (202)
...+...+.+.++|++.++..+..++.. + . +++|.||||||||.+|+.+|+.+.. ++.++.+
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~---~-~------~vll~G~PG~gKT~la~~lA~~l~~--------~~~~i~~ 76 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLA---G-G------HVLLEGPPGVGKTLLARALARALGL--------PFVRIQC 76 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHc---C-C------CEEEECCCCccHHHHHHHHHHHhCC--------CeEEEec
Confidence 4455666777899988777766555442 2 1 5899999999999999999999643 3444433
Q ss_pred ccccCCCCchhH--HHHHHhHHHHHHhhhhCCc--e---EEEEecCCCCChhHHHHHHHhcccCcccccc----cCC-ce
Q psy1695 93 SRIHFPNENHVS--LYRLQLTNWIISNVTACDR--A---IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI----SFQ-NT 160 (202)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~--~---viiiDEid~~~~~~~~~L~~~le~~~~~~~~----~~~-~~ 160 (202)
.....+. ...+ .+.......-...+...|. . ++++|||+++++.+++.|+++|+++.++... ... ..
T Consensus 77 t~~l~p~-d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 77 TPDLLPS-DLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred CCCCCHH-HhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 2111100 0011 0111000000000111111 3 9999999999999999999999998765432 233 34
Q ss_pred EEEEeeCc
Q psy1695 161 IFLFLSNS 168 (202)
Q Consensus 161 ~~Iltsn~ 168 (202)
++|.|+|.
T Consensus 156 ~viaT~Np 163 (329)
T COG0714 156 IVIATQNP 163 (329)
T ss_pred EEEEccCc
Confidence 45566674
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.44 E-value=1e-12 Score=107.76 Aligned_cols=125 Identities=11% Similarity=0.197 Sum_probs=79.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+..++.+..++......+. .+.+++|+||||||||++|+++|+.+.. . +........ .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~-----~~~~~~~~~-----~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE---ALDHLLLYGPPGLGKTTLAHIIANEMGV---N-----LKITSGPAL-----E 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCCHHHHHHHHHHHhCC---C-----EEEeccchh-----c
Confidence 3699999999999888876544322 4447899999999999999999998643 1 111111100 0
Q ss_pred hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc----cc-------ccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQ-------ISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~----~~-------~~~~~~~~Iltsn~~ 169 (202)
..+ .+...+.. + ....+++|||++++++..++.|+.++++.... .+ .......+|.+||..
T Consensus 68 ~~~----~l~~~l~~-~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 68 KPG----DLAAILTN-L--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred Cch----hHHHHHHh-c--ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 011 11111111 1 23479999999999999999999998876521 00 123345667766664
No 94
>KOG0733|consensus
Probab=99.44 E-value=3.4e-13 Score=116.23 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=93.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
+|=|++++..++..++..-...+. +-.-|-++||+||||||||.+|+++|++. + .+|+.+-...+.
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g--~NFisVKGPELl- 582 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------G--ANFISVKGPELL- 582 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------c--CceEeecCHHHH-
Confidence 345566777777776655322211 12346689999999999999999999983 2 345555433331
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
..|+|. .+.-.++++...+.+...||||||+|.+-+ .+.|.|+.-||... +-+++.+|.+|
T Consensus 583 --NkYVGE-SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~-----~R~gV~viaAT 654 (802)
T KOG0733|consen 583 --NKYVGE-SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE-----ERRGVYVIAAT 654 (802)
T ss_pred --HHHhhh-HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc-----cccceEEEeec
Confidence 123442 222233444444555568999999988855 36777777666431 22444555555
Q ss_pred CcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhh
Q psy1695 167 NSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLK 200 (202)
Q Consensus 167 n~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~ 200 (202)
| .++.|..++ ++.||. .-..+...||.+.|
T Consensus 655 N-RPDiIDpAi---LRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 655 N-RPDIIDPAI---LRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred C-CCcccchhh---cCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 5 455565553 455554 34456666777766
No 95
>KOG0739|consensus
Probab=99.44 E-value=5.9e-13 Score=106.34 Aligned_cols=132 Identities=19% Similarity=0.150 Sum_probs=84.0
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC---CCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY---HNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~---~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
+|.|.+.|++.+.+++.--+.-|. +.++|. ++||+||||||||+||+++|.+.. +.|..+..+++...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSSDLvSK 205 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK 205 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehHHHHHH
Confidence 578899999999988864221111 123554 699999999999999999999842 33443333333222
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-------hHHH-----HHHHhcccCcccccccCCceEEEEee
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-------GLLD-----VIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-------~~~~-----~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
+-+ ..+.+...+.++.++...+||||||||.+.. ++.. .|.|+-. .+.+...+.+.-.|
T Consensus 206 WmG----ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-----VG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 206 WMG----ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-----VGNDNDGVLVLGAT 276 (439)
T ss_pred Hhc----cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-----cccCCCceEEEecC
Confidence 211 2345677788888888889999999987743 1111 1222111 12466777777888
Q ss_pred CcChH
Q psy1695 167 NSGGT 171 (202)
Q Consensus 167 n~~~~ 171 (202)
|+...
T Consensus 277 NiPw~ 281 (439)
T KOG0739|consen 277 NIPWV 281 (439)
T ss_pred CCchh
Confidence 88753
No 96
>PRK08116 hypothetical protein; Validated
Probab=99.44 E-value=5.1e-13 Score=107.64 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHH-
Q psy1695 30 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL- 108 (202)
Q Consensus 30 a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (202)
|+..+.+.+..+..... .+.+++|+|++|||||+||.++++.+.. .+...-++ ....+... ....|..
T Consensus 96 a~~~a~~y~~~~~~~~~---~~~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~--~~~~ll~~---i~~~~~~~ 164 (268)
T PRK08116 96 AYKIARKYVKKFEEMKK---ENVGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFV--NFPQLLNR---IKSTYKSS 164 (268)
T ss_pred HHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEE--EHHHHHHH---HHHHHhcc
Confidence 45555555554432211 3346899999999999999999999866 32111111 11111000 0000000
Q ss_pred --HhHHHHHHhhhhCCceEEEEecC--CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 109 --QLTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 109 --~l~~~~~~~l~~~~~~viiiDEi--d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
.-...+.+.+. ..++|||||+ ++.+...++.|..+++... .+...+|+|||..++.+.+.+
T Consensus 165 ~~~~~~~~~~~l~--~~dlLviDDlg~e~~t~~~~~~l~~iin~r~------~~~~~~IiTsN~~~~eL~~~~ 229 (268)
T PRK08116 165 GKEDENEIIRSLV--NADLLILDDLGAERDTEWAREKVYNIIDSRY------RKGLPTIVTTNLSLEELKNQY 229 (268)
T ss_pred ccccHHHHHHHhc--CCCEEEEecccCCCCCHHHHHHHHHHHHHHH------HCCCCEEEECCCCHHHHHHHH
Confidence 00111222233 2479999999 6677788889999988642 145678999999998876653
No 97
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=1.2e-12 Score=110.09 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=53.4
Q ss_pred CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc----C--CCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~----~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+..+.+.|++.|+||+.|++.+..++..++... . ....|.+++|+||||||||++|+++|+.+.
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999999997642111 0 011356899999999999999999999864
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.43 E-value=2.1e-12 Score=98.80 Aligned_cols=110 Identities=14% Similarity=0.248 Sum_probs=69.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhhhcc---ccc--CCCCchhHHHHHHhHHHHHHhhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNS---RIH--FPNENHVSLYRLQLTNWIISNVT 119 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~l~ 119 (202)
.|..++|+||+|+|||++|+.+++.+.+..+.. .+..+..+... .+. .......+ .+. ...+.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~--~~~-i~~i~~~~~ 89 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK--VDQ-VRELVEFLS 89 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC--HHH-HHHHHHHHc
Confidence 556799999999999999999999998731111 01111111100 000 01111111 111 112223332
Q ss_pred ----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 120 ----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 120 ----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
..+..|+||||+|+++...++.|+..|++++ .++.||+++|..
T Consensus 90 ~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~ 136 (188)
T TIGR00678 90 RTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-------PNTLFILITPSP 136 (188)
T ss_pred cCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 2445899999999999999999999999977 789999998744
No 99
>KOG2028|consensus
Probab=99.43 E-value=3.5e-13 Score=110.21 Aligned_cols=113 Identities=23% Similarity=0.353 Sum_probs=71.0
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
+.+||+..+.+ ...++..+.... .| +++||||||||||++|+.|+..... . .-.|+.. +. ....
T Consensus 139 dyvGQ~hlv~q-~gllrs~ieq~~---ip-SmIlWGppG~GKTtlArlia~tsk~---~--Syrfvel--SA----t~a~ 202 (554)
T KOG2028|consen 139 DYVGQSHLVGQ-DGLLRSLIEQNR---IP-SMILWGPPGTGKTTLARLIASTSKK---H--SYRFVEL--SA----TNAK 202 (554)
T ss_pred HhcchhhhcCc-chHHHHHHHcCC---CC-ceEEecCCCCchHHHHHHHHhhcCC---C--ceEEEEE--ec----cccc
Confidence 57888888777 344455555433 44 6999999999999999999988433 1 1112211 10 0111
Q ss_pred hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
+...+..+.+.-.+........|+||||+++++...|+.+++.+|+|.+
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I 251 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI 251 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce
Confidence 1111111112212222334458999999999999999999999999864
No 100
>KOG0733|consensus
Probab=99.43 E-value=1.8e-12 Score=111.85 Aligned_cols=150 Identities=13% Similarity=0.208 Sum_probs=90.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|-+..+..+.+.+.. ..++. +-..|.++|||||||||||.+|+++|.++. .+|+.+....+..
T Consensus 191 diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isApeivS 261 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAPEIVS 261 (802)
T ss_pred hccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecchhhhc
Confidence 455667777777666654 22221 012455799999999999999999999963 3566555544433
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh-----------HHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~-----------~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
... |..++.+. .+++........|+||||||...+. +...|+..||+-... ...-..+++|.+|
T Consensus 262 GvS---GESEkkiR-elF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIgAT 336 (802)
T KOG0733|consen 262 GVS---GESEKKIR-ELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIGAT 336 (802)
T ss_pred ccC---cccHHHHH-HHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEecC
Confidence 222 21222222 3333333334479999999888662 456677777764311 1223557888888
Q ss_pred CcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 167 NSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 167 n~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
|..... + .-++++||.+-.+
T Consensus 337 nRPDsl--D--paLRRaGRFdrEI 356 (802)
T KOG0733|consen 337 NRPDSL--D--PALRRAGRFDREI 356 (802)
T ss_pred CCCccc--C--HHHhcccccccee
Confidence 876542 1 2258888875443
No 101
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.4e-12 Score=105.35 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=73.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---cccc--CCCC--chhHHHHHHhHHHHHHhhh---
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---SRIH--FPNE--NHVSLYRLQLTNWIISNVT--- 119 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~--~~~~--~~~~~~~~~l~~~~~~~l~--- 119 (202)
.|++++|+||+|+||+.+|..+|+.+.|. .....+..+.. ++++ .+.. ..++ .++ .+.+.+.+.
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~---~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~--idq-iR~l~~~~~~~p 91 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKE---TSPEAAYKISQKIHPDIHEFSPQGKGRLHS--IET-PRAIKKQIWIHP 91 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCC---CCccHHHHHhcCCCCCEEEEecCCCCCcCc--HHH-HHHHHHHHhhCc
Confidence 67789999999999999999999999983 11111111111 1111 1111 1122 111 223333333
Q ss_pred -hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 120 -ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 120 -~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.+++.|+|||++|+|+.+++|.|+++||+++ .+++||++|+....
T Consensus 92 ~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------~~~~fiL~~~~~~~ 137 (290)
T PRK05917 92 YESPYKIYIIHEADRMTLDAISAFLKVLEDPP-------QHGVIILTSAKPQR 137 (290)
T ss_pred cCCCceEEEEechhhcCHHHHHHHHHHhhcCC-------CCeEEEEEeCChhh
Confidence 3455999999999999999999999999998 89999999987543
No 102
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4e-12 Score=104.41 Aligned_cols=129 Identities=11% Similarity=0.128 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC----cCccchhhhhcc---ccc-
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSRFVHKFNS---RIH- 96 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~----~~~~~~~~~~~~---~~~- 96 (202)
..+....+.+.+++.+ .+.|++++|+||.|+||+.+|+.+|+.+.+.... |.+..+..+... ++.
T Consensus 6 PWl~~~~~~l~~~~~~-------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 6 PWLVPVWQNWKAGLDA-------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV 78 (319)
T ss_pred ccHHHHHHHHHHHHHc-------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE
Confidence 3445555555444432 2366689999999999999999999999984221 111112222111 111
Q ss_pred -CCC--CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 97 -FPN--ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 97 -~~~--~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+. ...++ .+++ +.+.+.+. .+++.|+|||++|+|+..++|.|++.||+++ .+++||++|+..
T Consensus 79 i~p~~~~~~I~--vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~ 148 (319)
T PRK06090 79 IKPEKEGKSIT--VEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------PNCLFLLVTHNQ 148 (319)
T ss_pred EecCcCCCcCC--HHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence 111 11222 1122 23333333 3446999999999999999999999999998 899999999865
Q ss_pred h
Q psy1695 170 G 170 (202)
Q Consensus 170 ~ 170 (202)
.
T Consensus 149 ~ 149 (319)
T PRK06090 149 K 149 (319)
T ss_pred h
Confidence 4
No 103
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.42 E-value=1.5e-12 Score=104.66 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------cccCCCCc
Q psy1695 28 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RIHFPNEN 101 (202)
Q Consensus 28 ~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~ 101 (202)
..+++.+.+.+..++.... +++|.||||||||++|+++|+.+.. +++.+.+. .+.+...+
T Consensus 4 t~~~~~l~~~~l~~l~~g~------~vLL~G~~GtGKT~lA~~la~~lg~--------~~~~i~~~~~~~~~dllg~~~~ 69 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGY------PVHLRGPAGTGKTTLAMHVARKRDR--------PVMLINGDAELTTSDLVGSYAG 69 (262)
T ss_pred CHHHHHHHHHHHHHHhcCC------eEEEEcCCCCCHHHHHHHHHHHhCC--------CEEEEeCCccCCHHHHhhhhcc
Confidence 3455666666666655433 5789999999999999999987532 22222211 11111100
Q ss_pred hh--HHHHHH---------------hHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-c--------
Q psy1695 102 HV--SLYRLQ---------------LTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I-------- 155 (202)
Q Consensus 102 ~~--~~~~~~---------------l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-~-------- 155 (202)
+. ..+... ..+.+..+.. ...+++|||++++++++++.|+++|+++.+... .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 70 YTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVD 147 (262)
T ss_pred cchhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence 00 000000 0011222222 236999999999999999999999998764321 1
Q ss_pred cCCceEEEEeeCcC
Q psy1695 156 SFQNTIFLFLSNSG 169 (202)
Q Consensus 156 ~~~~~~~Iltsn~~ 169 (202)
...+..+|+|+|..
T Consensus 148 ~~~~frvIaTsN~~ 161 (262)
T TIGR02640 148 VHPEFRVIFTSNPV 161 (262)
T ss_pred cCCCCEEEEeeCCc
Confidence 12356789999975
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.41 E-value=1.4e-12 Score=111.35 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=67.0
Q ss_pred hCCChHHHHHH---HHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 23 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 23 ~liGq~~a~~~---l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
+++||+.++.. +.+.+. .. .+.+++|+||||||||++|+++++.+.. .++.+....
T Consensus 13 d~vGq~~~v~~~~~L~~~i~----~~----~~~~ilL~GppGtGKTtLA~~ia~~~~~--------~~~~l~a~~----- 71 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIE----AG----RLSSMILWGPPGTGKTTLARIIAGATDA--------PFEALSAVT----- 71 (413)
T ss_pred HhcCcHHHhCcchHHHHHHH----cC----CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEeccc-----
Confidence 59999988766 544443 21 3337899999999999999999998543 222222111
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
. .+..... +..............|++|||+++++...++.|++.++++
T Consensus 72 ~-~~~~ir~-ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~ 119 (413)
T PRK13342 72 S-GVKDLRE-VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG 119 (413)
T ss_pred c-cHHHHHH-HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC
Confidence 0 1111111 1111111122235689999999999999999999999984
No 105
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=1.4e-12 Score=109.61 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=52.1
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
...+.++|++.++||++|++.+..++..++.... ..-.|.+++|+||||||||++|+++|+.+.
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678899999999999999999999987532111 012456799999999999999999999964
No 106
>KOG0738|consensus
Probab=99.40 E-value=2e-12 Score=106.42 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=86.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC---CCCCc-eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY---HNTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~---~~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++|.|-++|++.+.+|+---+-.|. +..+| .++|++||||||||.||+++|.+.. ..|..+..+.+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--------tTFFNVSsstltS 283 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--------TTFFNVSSSTLTS 283 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--------CeEEEechhhhhh
Confidence 3588999999999999875221111 12244 4799999999999999999999831 3444444444322
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC------------hhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~------------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.+.+ -.+.+..-++++.+.....+|||||||.+. ..+-+.|+..||.-. ...+.++.+|++.
T Consensus 284 KwRG----eSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~--~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 284 KWRG----ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ--GTLENSKVVMVLA 357 (491)
T ss_pred hhcc----chHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc--cccccceeEEEEe
Confidence 2222 223456667777676667899999996653 245667777777421 1123345666665
Q ss_pred e-CcChH
Q psy1695 166 S-NSGGT 171 (202)
Q Consensus 166 s-n~~~~ 171 (202)
+ |...+
T Consensus 358 ATN~PWd 364 (491)
T KOG0738|consen 358 ATNFPWD 364 (491)
T ss_pred ccCCCcc
Confidence 5 55554
No 107
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.40 E-value=1e-13 Score=98.34 Aligned_cols=122 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc-cccCCCCchhH--HHHHHhHHHHHHhhhhCC--ceEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHFPNENHVS--LYRLQLTNWIISNVTACD--RAIFI 127 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~--~~vii 127 (202)
|+|++|+||+|||++|+++|+.+.. .|.++.+. ++..++ ..+ .|... .+. -.+...| ..|++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~--------~f~RIq~tpdllPsD--i~G~~v~~~~-~~~--f~~~~GPif~~ill 67 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL--------SFKRIQFTPDLLPSD--ILGFPVYDQE-TGE--FEFRPGPIFTNILL 67 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT----------EEEEE--TT--HHH--HHEEEEEETT-TTE--EEEEE-TT-SSEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC--------ceeEEEecCCCCccc--ceeeeeeccC-CCe--eEeecChhhhceee
Confidence 5799999999999999999999643 12222110 000000 000 00000 000 0011122 27999
Q ss_pred EecCCCCChhHHHHHHHhcccCcccc-c--ccCCceE-EEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 128 FDEVDKFPKGLLDVIIPFIDHHAVYN-Q--ISFQNTI-FLFLSNSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 128 iDEid~~~~~~~~~L~~~le~~~~~~-~--~~~~~~~-~Iltsn~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
+||++++++.+|+.|+++|+++.++. + ....+.. +|.|-|.... +..+++..+..+||.+
T Consensus 68 ~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~---~Gty~Lpea~~DRF~~ 131 (131)
T PF07726_consen 68 ADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ---EGTYPLPEAQLDRFMM 131 (131)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT-----S------HHHHTTSSE
T ss_pred ecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc---CceecCCHHHhccccC
Confidence 99999999999999999999998763 2 3444544 4556676432 3567788888888864
No 108
>PHA02244 ATPase-like protein
Probab=99.40 E-value=1.9e-12 Score=107.32 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=83.1
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc----ccc
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----SRI 95 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~ 95 (202)
++...+|+..........+.+++.... +++|+||||||||++|+++|+.+.. +++.++. ..+
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~------PVLL~GppGtGKTtLA~aLA~~lg~--------pfv~In~l~d~~~L 159 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANI------PVFLKGGAGSGKNHIAEQIAEALDL--------DFYFMNAIMDEFEL 159 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCC------CEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecChHHHhh
Confidence 344567777777777777777665432 5799999999999999999998533 2222211 011
Q ss_pred cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695 96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS 168 (202)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~ 168 (202)
.+.... .+.+. ...+..++. ..++++|||++.++++++..|..+++.+.+... ....+..+|+|+|.
T Consensus 160 ~G~i~~-~g~~~---dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 160 KGFIDA-NGKFH---ETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred cccccc-ccccc---chHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 000000 01121 122323332 357999999999999999999999987653321 13467899999998
No 109
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.39 E-value=1e-12 Score=114.59 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=74.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|++.+++.+.+.+.. +..+. ....|.+++|+||||||||++|+++|..+.. +++.+..+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--------~~~~i~~~~~~ 125 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--------PFFSISGSDFV 125 (495)
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------CeeeccHHHHH
Confidence 3689999999988876653 22110 1235567999999999999999999998532 33333222211
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
... .+..... ...+..........||+|||+|.+.. ...+.|+..|+... +..+.++
T Consensus 126 ~~~---~g~~~~~-l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-----~~~~v~v 196 (495)
T TIGR01241 126 EMF---VGVGASR-VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----TNTGVIV 196 (495)
T ss_pred HHH---hcccHHH-HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-----CCCCeEE
Confidence 100 0000011 12222333334457999999988643 23445555554321 2245777
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|.+||...
T Consensus 197 I~aTn~~~ 204 (495)
T TIGR01241 197 IAATNRPD 204 (495)
T ss_pred EEecCChh
Confidence 88887753
No 110
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.39 E-value=1.3e-12 Score=110.49 Aligned_cols=133 Identities=14% Similarity=0.224 Sum_probs=77.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+..++.+.+++...+.++. +-..|.+++|+||||||||++|+++|+.+.. .++.+..+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--------~fi~i~~s~l~ 216 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--------TFIRVVGSEFV 216 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEehHHHH
Confidence 3689999999999998875433221 1235668999999999999999999998533 23322222111
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLF 164 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Il 164 (202)
. .+.+.. ......+..........||+|||+|.+. ..++..+.+++..- ++. ...++.+|+
T Consensus 217 ~---k~~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l---d~~~~~~~v~VI~ 289 (398)
T PTZ00454 217 Q---KYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM---DGFDQTTNVKVIM 289 (398)
T ss_pred H---Hhcchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh---hccCCCCCEEEEE
Confidence 1 111111 1112223333344455899999998762 23444455544331 111 124678899
Q ss_pred eeCcC
Q psy1695 165 LSNSG 169 (202)
Q Consensus 165 tsn~~ 169 (202)
+||..
T Consensus 290 aTN~~ 294 (398)
T PTZ00454 290 ATNRA 294 (398)
T ss_pred ecCCc
Confidence 99864
No 111
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=3e-12 Score=116.46 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=83.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|++.+++.+.+.+...+..+. ....|.+++|+||||||||++|+++|+.+.. +++.+..+.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--------~fi~v~~~~l~ 524 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--------NFIAVRGPEIL 524 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEehHHHh
Confidence 3588999999999888875332211 1235667999999999999999999998533 34444333332
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
.. +++ ..+.....+..........|+||||+|.+.+ .+.+.|+..|+.-. ...+.++|.
T Consensus 525 ~~---~vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~v~vI~ 595 (733)
T TIGR01243 525 SK---WVG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----ELSNVVVIA 595 (733)
T ss_pred hc---ccC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----CCCCEEEEE
Confidence 22 222 1111133344444555668999999987632 24566666666311 236788888
Q ss_pred eeCcCh
Q psy1695 165 LSNSGG 170 (202)
Q Consensus 165 tsn~~~ 170 (202)
+||...
T Consensus 596 aTn~~~ 601 (733)
T TIGR01243 596 ATNRPD 601 (733)
T ss_pred eCCChh
Confidence 888754
No 112
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.38 E-value=3.2e-12 Score=105.91 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 103 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
++|+..+++.+.+.+.+...... +++|+|++||||+++|++|...... . ..+|+.+++..+... .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~------pVLI~GE~GtGK~~lAr~iH~~s~r---~--~~pfv~vnc~~~~~~---~- 65 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDR------PVLIIGERGTGKELIAARLHYLSKR---W--QGPLVKLNCAALSEN---L- 65 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCC------CEEEECCCCChHHHHHHHHHHhcCc---c--CCCeEEEeCCCCChH---H-
Confidence 57999999999999988765433 6899999999999999999887432 1 357777776543211 0
Q ss_pred HHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCc
Q psy1695 104 SLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNS 168 (202)
Q Consensus 104 ~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~ 168 (202)
....+.+ .-.+.+.....++++|||++.++...|..|+.+++++.+.. + ....++.+|++||.
T Consensus 66 --l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 66 --LDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred --HHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 0000000 00112344456899999999999999999999999876432 1 12346788999987
Q ss_pred ChH
Q psy1695 169 GGT 171 (202)
Q Consensus 169 ~~~ 171 (202)
...
T Consensus 144 ~l~ 146 (329)
T TIGR02974 144 DLP 146 (329)
T ss_pred hHH
Confidence 643
No 113
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=2.9e-12 Score=106.15 Aligned_cols=112 Identities=12% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhhcc---ccc--CCC------------------
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKFNS---RIH--FPN------------------ 99 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~~~---~~~--~~~------------------ 99 (202)
+.|++++|+||+|+||+++|+.+|+.+.|..+. |.+..+..+... ++. .+.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 367789999999999999999999999984211 111111111111 110 000
Q ss_pred --C--------chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 100 --E--------NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 100 --~--------~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
. ..++ .++ .+.+.+.+. .+++.|+|||++|+|+.++.|.|++.||+++ .+++||++
T Consensus 99 ~~~~~k~~~~~~~I~--idq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~ 168 (342)
T PRK06964 99 DEGGKKTKAPSKEIK--IEQ-VRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPP-------PGTVFLLV 168 (342)
T ss_pred hcccccccccccccC--HHH-HHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------cCcEEEEE
Confidence 0 1111 111 222333333 3345899999999999999999999999998 89999999
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
|+...
T Consensus 169 t~~~~ 173 (342)
T PRK06964 169 SARID 173 (342)
T ss_pred ECChh
Confidence 97754
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.38 E-value=2.4e-12 Score=108.18 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=79.5
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 95 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 95 (202)
.+++.|.+.+++.+.+++...+..+. ....|.+++|+||||||||++|+++|+.+.. .++.+....+
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--------~~~~v~~~~l 192 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSEL 192 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--------CEEecchHHH
Confidence 35799999999999998865433211 0234668999999999999999999998643 2333222211
Q ss_pred cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCccccc-ccCCceEEE
Q psy1695 96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQ-ISFQNTIFL 163 (202)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~-~~~~~~~~I 163 (202)
.. .+.+. .......+..........||+|||+|.+. +..+..+.+++..-. + ....++.||
T Consensus 193 ~~---~~~g~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld---~~~~~~~v~vI 265 (364)
T TIGR01242 193 VR---KYIGE-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD---GFDPRGNVKVI 265 (364)
T ss_pred HH---HhhhH-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh---CCCCCCCEEEE
Confidence 11 11110 11112222233333344799999998873 334555666554311 1 122578889
Q ss_pred EeeCcC
Q psy1695 164 FLSNSG 169 (202)
Q Consensus 164 ltsn~~ 169 (202)
+|||..
T Consensus 266 ~ttn~~ 271 (364)
T TIGR01242 266 AATNRP 271 (364)
T ss_pred EecCCh
Confidence 999865
No 115
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.38 E-value=2.3e-12 Score=113.00 Aligned_cols=121 Identities=19% Similarity=0.301 Sum_probs=73.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC--cCccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 100 (202)
+++||+.+++.+..++. . ..|.+++|+||||||||++|+++++........ ....+|+.+++........
T Consensus 66 ~iiGqs~~i~~l~~al~----~----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~ 137 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC----G----PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER 137 (531)
T ss_pred HeeCcHHHHHHHHHHHh----C----CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence 59999999988875532 1 134578999999999999999998875331000 0123455555432111000
Q ss_pred ch----hH-----HHHH--Hh-----HHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 101 NH----VS-----LYRL--QL-----TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 101 ~~----~~-----~~~~--~l-----~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
.. ++ .|.. .+ ...-.+.+..+..++++|||++++++..|+.|+++|+++.+
T Consensus 138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~ 204 (531)
T TIGR02902 138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKV 204 (531)
T ss_pred ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCee
Confidence 00 00 0000 00 00001223445568999999999999999999999998653
No 116
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.38 E-value=4.3e-12 Score=105.22 Aligned_cols=125 Identities=12% Similarity=0.210 Sum_probs=79.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+..++.+...+........ .+.+++|+||||||||++|+++|+.+.. . +........ .
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~GppG~GKT~la~~ia~~l~~---~-----~~~~~~~~~-----~ 88 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGE---ALDHVLLYGPPGLGKTTLANIIANEMGV---N-----IRITSGPAL-----E 88 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCC---CCCcEEEECCCCccHHHHHHHHHHHhCC---C-----eEEEecccc-----c
Confidence 3599999999999888876543322 3447999999999999999999999643 1 111111100 0
Q ss_pred hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc----cc-------ccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQ-------ISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~----~~-------~~~~~~~~Iltsn~~ 169 (202)
..+ .+...+ ..+ ....|++|||++.++...++.|...++..... .+ .......+|.+||..
T Consensus 89 ~~~----~l~~~l-~~l--~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 89 KPG----DLAAIL-TNL--EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred ChH----HHHHHH-Hhc--ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 011 111111 111 24579999999999998889998888875421 11 122345677777764
No 117
>KOG0731|consensus
Probab=99.38 E-value=1.8e-12 Score=115.25 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=92.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.++|++.+.+.+.- +.+|. +-+.|.++||+||||||||.||+++|-+. ..+|+.+..+++.
T Consensus 311 kDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGSEFv 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGSEFV 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechHHHH
Confidence 4799999999999777653 22221 13467789999999999999999999983 2344444333221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh---------------hHHHHHHHhcccCcccccccCCceE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTI 161 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~---------------~~~~~L~~~le~~~~~~~~~~~~~~ 161 (202)
....+ .+ ..-.+.+....+.....+|++||+|.... ..+|.|+.-||... ...+++
T Consensus 382 E~~~g-~~---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-----~~~~vi 452 (774)
T KOG0731|consen 382 EMFVG-VG---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-----TSKGVI 452 (774)
T ss_pred HHhcc-cc---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc-----CCCcEE
Confidence 11000 00 00023333334444458999999965532 24555555555422 124566
Q ss_pred EEEeeCcChHHHHHHHHHHHHhhhHHHHh---------ccchhHHHhhcC
Q psy1695 162 FLFLSNSGGTEIMNTFLELRKSECIEFIF---------QCQPLKVYLKKL 202 (202)
Q Consensus 162 ~Iltsn~~~~~i~~~~~~~~~~~~~r~~~---------~~~~~~~~~~~~ 202 (202)
|+.+||.. +.+..+ +++.||.+..+ +.+.++++++++
T Consensus 453 ~~a~tnr~-d~ld~a---llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 453 VLAATNRP-DILDPA---LLRPGRFDRQIQIDLPDVKGRASILKVHLRKK 498 (774)
T ss_pred EEeccCCc-cccCHH---hcCCCccccceeccCCchhhhHHHHHHHhhcc
Confidence 66666654 444333 56777765444 444577777653
No 118
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.37 E-value=1.1e-12 Score=100.66 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=75.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-c-cchhhhhc----ccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-T-SRFVHKFN----SRI 95 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-~-~~~~~~~~----~~~ 95 (202)
++|+||+.++..+.-+... . .+++|+||||||||++|+.++..|-.-..... . ..+..+.. ..+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~ 72 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----G------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGL 72 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EE
T ss_pred hhhcCcHHHHHHHHHHHcC----C------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCce
Confidence 4699999999988766653 1 27999999999999999999988654211100 0 00000000 000
Q ss_pred cCCC----C-chhHHHHHHhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-----c-cCCce
Q psy1695 96 HFPN----E-NHVSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----I-SFQNT 160 (202)
Q Consensus 96 ~~~~----~-~~~~~~~~~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-----~-~~~~~ 160 (202)
.... + ..+. ...+.+ ...+.+..+..+|+|+||+..+++.+++.|++.|+++.++.. + --.+.
T Consensus 73 ~~~~Pfr~phhs~s--~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 73 IRQRPFRAPHHSAS--EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp EE---EEEE-TT----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred ecCCCcccCCCCcC--HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 0000 0 0000 000000 011234455569999999999999999999999999875421 1 22355
Q ss_pred EEEEeeCcCh
Q psy1695 161 IFLFLSNSGG 170 (202)
Q Consensus 161 ~~Iltsn~~~ 170 (202)
.+|.|+|..+
T Consensus 151 ~lv~a~NPcp 160 (206)
T PF01078_consen 151 LLVAAMNPCP 160 (206)
T ss_dssp EEEEEE-S--
T ss_pred EEEEEecccc
Confidence 7788888743
No 119
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.37 E-value=9.5e-13 Score=99.92 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=64.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 128 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii 128 (202)
+.+++|+||+|||||++|.++++.+.. .+....|+... +..+....... . + ......+.. .+++||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~~-~-~-----~~~~~~l~~--~dlLil 114 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSDG-S-Y-----EELLKRLKR--VDLLIL 114 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCCT-T-H-----CHHHHHHHT--SSCEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceecccccccccc-c-h-----hhhcCcccc--ccEecc
Confidence 347999999999999999999999876 44333333221 11111110000 0 1 111222332 479999
Q ss_pred ecCCCC--ChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 129 DEVDKF--PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 129 DEid~~--~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
||+... +....+.|.++++... .+..+|+|||...+.+.+.+.+
T Consensus 115 DDlG~~~~~~~~~~~l~~ii~~R~-------~~~~tIiTSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 115 DDLGYEPLSEWEAELLFEIIDERY-------ERKPTIITSNLSPSELEEVLGD 160 (178)
T ss_dssp ETCTSS---HHHHHCTHHHHHHHH-------HT-EEEEEESS-HHHHHT----
T ss_pred cccceeeecccccccchhhhhHhh-------cccCeEeeCCCchhhHhhcccc
Confidence 999655 4567777888888743 3456888999999988887764
No 120
>CHL00176 ftsH cell division protein; Validated
Probab=99.36 E-value=6.2e-12 Score=111.94 Aligned_cols=131 Identities=16% Similarity=0.153 Sum_probs=74.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|.+++++.+.+.+.. +..+. +...|.+++|+||||||||++|+++|..+.. +++.+..+.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--------p~i~is~s~f~ 253 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--------PFFSISGSEFV 253 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CeeeccHHHHH
Confidence 4689999999988776543 22221 1234668999999999999999999998522 33333332221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hh---HHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KG---LLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~---~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+. + ... ...+..........||+|||+|.+. .. .++.|+..++... ...+.++
T Consensus 254 ~~~~g~-~--~~~-vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----~~~~ViV 324 (638)
T CHL00176 254 EMFVGV-G--AAR-VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----GNKGVIV 324 (638)
T ss_pred HHhhhh-h--HHH-HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----CCCCeeE
Confidence 111100 0 011 1222223333445799999998773 22 2344444444311 2246778
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|.+||...
T Consensus 325 IaaTN~~~ 332 (638)
T CHL00176 325 IAATNRVD 332 (638)
T ss_pred EEecCchH
Confidence 88887753
No 121
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.36 E-value=5.6e-12 Score=110.93 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=92.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
..++|+..+++.+.+.+........ +++|+|++||||+++|++|+..... . ..+|+.+++..+...
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~s~r---~--~~pfv~i~c~~~~~~--- 261 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYLSPR---A--KRPFVKVNCAALSET--- 261 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHhCCC---C--CCCeEEeecCCCCHH---
Confidence 3689999999999999988765432 6899999999999999999987443 2 356777776544110
Q ss_pred hhHHHHHHhHH----HH-------HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695 102 HVSLYRLQLTN----WI-------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS 166 (202)
Q Consensus 102 ~~~~~~~~l~~----~~-------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts 166 (202)
. ....+.+ .+ .+.+.....++++|||++.++...|..|+++++++.+... ....++.+|++|
T Consensus 262 ~---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 262 L---LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred H---HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 0 0000000 00 0112334458999999999999999999999998764321 112357889999
Q ss_pred CcChHH
Q psy1695 167 NSGGTE 172 (202)
Q Consensus 167 n~~~~~ 172 (202)
+...+.
T Consensus 339 ~~~l~~ 344 (534)
T TIGR01817 339 NRDLEE 344 (534)
T ss_pred CCCHHH
Confidence 877543
No 122
>KOG0736|consensus
Probab=99.36 E-value=2.3e-12 Score=113.59 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=86.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
+|=|-++++..|.+.++--+.++.- -++..+++||||||||||.+|+++|.++.- .|+.+-..++.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL--------~FlSVKGPELL-- 742 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL--------NFLSVKGPELL-- 742 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee--------eEEeecCHHHH--
Confidence 4667899999999999874433321 122347999999999999999999998422 23333222221
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh-------------HHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-------------LLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~-------------~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
..|+|..++ -.+.+.+..+.+...||||||+|.+-|. +...|+.-||.-. .+..+.+||+-
T Consensus 743 -NMYVGqSE~-NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls----~~~s~~VFViG 816 (953)
T KOG0736|consen 743 -NMYVGQSEE-NVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLS----DSSSQDVFVIG 816 (953)
T ss_pred -HHHhcchHH-HHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhccc----CCCCCceEEEe
Confidence 122332221 1334555566666789999999998662 3344444444311 11345555555
Q ss_pred eCcChHHHHHHHHHHHHhhhHHH
Q psy1695 166 SNSGGTEIMNTFLELRKSECIEF 188 (202)
Q Consensus 166 sn~~~~~i~~~~~~~~~~~~~r~ 188 (202)
++..++.+..+ +++.||.+-
T Consensus 817 ATNRPDLLDpA---LLRPGRFDK 836 (953)
T KOG0736|consen 817 ATNRPDLLDPA---LLRPGRFDK 836 (953)
T ss_pred cCCCccccChh---hcCCCccce
Confidence 55555555444 355565543
No 123
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.34 E-value=8.7e-12 Score=106.22 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=98.9
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC-
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP- 98 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 98 (202)
....++|+..+++.+.+.+.+...... .++++|++||||-.+|++|.+.-.+ . ..+|+.++++.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a------~VLI~GESGtGKElvAr~IH~~S~R---~--~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDA------SVLITGESGTGKELVARAIHQASPR---A--KGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHhhCcc---c--CCCceeeecccCCHHH
Confidence 345799999999999999988765543 6899999999999999999887433 2 467888887654221
Q ss_pred --------CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695 99 --------NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS 166 (202)
Q Consensus 99 --------~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts 166 (202)
..+.+. .. ...-.+.+..+..+.+|||||..||.++|..|+++|+++.+..- .-.-++.+|.+|
T Consensus 208 ~ESELFGhekGAFT---GA-~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 208 LESELFGHEKGAFT---GA-ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred HHHHhhcccccCcC---Cc-ccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence 111000 00 00111234455668999999999999999999999999876431 234578899999
Q ss_pred CcChHH
Q psy1695 167 NSGGTE 172 (202)
Q Consensus 167 n~~~~~ 172 (202)
|..-+.
T Consensus 284 ~~dL~~ 289 (464)
T COG2204 284 NRDLEE 289 (464)
T ss_pred CcCHHH
Confidence 887543
No 124
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.8e-11 Score=99.15 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccccC----
Q psy1695 27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRIHF---- 97 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~~~---- 97 (202)
|+.+++.+..++... +.|++++|+|| +||+.+|+.+|+.+.+..+. |.+..+..+....+.+
T Consensus 7 q~~~~~~L~~~~~~~-------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i 77 (290)
T PRK07276 7 QPKVFQRFQTILEQD-------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI 77 (290)
T ss_pred HHHHHHHHHHHHHcC-------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeee
Confidence 666777766666542 25668999996 68999999999999984321 1122222222211111
Q ss_pred -CCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 98 -PNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 98 -~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+....++ .++ .+.+...+.. +++.|+|||++|+|+..+.|.|++.||+++ .+++||++|+...
T Consensus 78 ~p~~~~I~--idq-IR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-------~~t~~iL~t~~~~ 145 (290)
T PRK07276 78 EPQGQVIK--TDT-IRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-------SEIYIFLLTNDEN 145 (290)
T ss_pred cCCCCcCC--HHH-HHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence 1111222 112 2223333333 345999999999999999999999999998 8999999997653
No 125
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.33 E-value=5.1e-12 Score=92.02 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhH
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS 104 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (202)
+|+..+++.+.+.+........ +++++|++||||+++|++|+..-.. . ...++..++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~------pvli~GE~GtGK~~~A~~lh~~~~~---~--~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSS------PVLITGEPGTGKSLLARALHRYSGR---A--NGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHTTTT---C--CS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhCCCC------cEEEEcCCCCCHHHHHHHHHhhcCc---c--CCCeEEechhhCc--------
Confidence 5888899999999998775543 6799999999999999999887322 1 2233333332210
Q ss_pred HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 105 LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 105 ~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
.+.+.....+.++|+|+|.++++.|..|...++... ..+..+|++|....+.
T Consensus 62 ----------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~------~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 62 ----------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE------RSNVRLIASSSQDLEE 113 (138)
T ss_dssp ----------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT------TTTSEEEEEECC-CCC
T ss_pred ----------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC------CCCeEEEEEeCCCHHH
Confidence 011223456789999999999999999999998742 1577888998877554
No 126
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.33 E-value=8.3e-12 Score=109.09 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=92.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc---CcCccchhhhhcccccCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK---DKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 99 (202)
+++|+..+++.+.+.+........ +++++|++||||+.+|++|.+.+..... .....+|+.++++.+....
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s~~------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l 293 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARSSA------AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 293 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh
Confidence 499999999999999988765433 6899999999999999999987321000 1114577877776542210
Q ss_pred Cc--hhHHHHH-HhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695 100 EN--HVSLYRL-QLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS 168 (202)
Q Consensus 100 ~~--~~~~~~~-~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~ 168 (202)
.. .++ +.+ .+.+ .-.+.+.....+.+|||||+.|+...|..|+++++++.+... .--.++.+|.+||.
T Consensus 294 leseLFG-~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~ 372 (538)
T PRK15424 294 LEAELFG-YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 372 (538)
T ss_pred HHHHhcC-CccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCC
Confidence 00 000 000 0000 001123344568999999999999999999999998765421 11235678999987
Q ss_pred ChHH
Q psy1695 169 GGTE 172 (202)
Q Consensus 169 ~~~~ 172 (202)
.-+.
T Consensus 373 ~L~~ 376 (538)
T PRK15424 373 DLEE 376 (538)
T ss_pred CHHH
Confidence 7554
No 127
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=6.6e-12 Score=99.62 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCc---Cccchhhhhc---ccccC--CCCchhHHHHHHhHHHHHHhhh--
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRFVHKFN---SRIHF--PNENHVSLYRLQLTNWIISNVT-- 119 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~~~~~~~l~-- 119 (202)
.|++++|+||+|+||..+|.++|+.+.|..+.+ .+..+..+.. ++++. +....++ .++ .+.+.+.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~-ir~l~~~l~~~ 82 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KED-ALSIINKLNRP 82 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHH-HHHHHHHHccC
Confidence 677899999999999999999999999843221 1222222221 22221 1112222 111 222333222
Q ss_pred ---hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 120 ---ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 120 ---~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.+++.|+|||++|+|+..+.|.|++.+|+++ .+++||++|+....
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------~~t~fiLit~~~~~ 130 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------KNTYGIFTTRNENN 130 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------CCeEEEEEECChHh
Confidence 2346999999999999999999999999999 99999999986543
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7e-12 Score=109.37 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=80.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++.|.+.+++.+.+++...+..+. ..+.|.++||+||||||||++|+++|..+. .+|+.+..+.+..
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--------~~fi~v~~~~l~s 314 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--------SRFISVKGSELLS 314 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--------CeEEEeeCHHHhc
Confidence 355667778887777766433322 123556899999999999999999999742 3555555544433
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
..-+.. ... ...+..........||||||+|.+-+ .+.+.|+..++.-. ...++++|.+|
T Consensus 315 k~vGes---ek~-ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----~~~~v~vi~aT 385 (494)
T COG0464 315 KWVGES---EKN-IRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----KAEGVLVIAAT 385 (494)
T ss_pred cccchH---HHH-HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----ccCceEEEecC
Confidence 222221 111 23333333444458999999987733 35666666665322 23566777777
Q ss_pred CcChH
Q psy1695 167 NSGGT 171 (202)
Q Consensus 167 n~~~~ 171 (202)
|....
T Consensus 386 N~p~~ 390 (494)
T COG0464 386 NRPDD 390 (494)
T ss_pred CCccc
Confidence 77543
No 129
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.31 E-value=2.3e-11 Score=109.70 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=65.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
+++||+..+.. ...+.+.+... +..+++|+||||||||++|+++++.+.. .++.++... . .
T Consensus 29 d~vGQe~ii~~-~~~L~~~i~~~----~~~slLL~GPpGtGKTTLA~aIA~~~~~--------~f~~lna~~-----~-~ 89 (725)
T PRK13341 29 EFVGQDHILGE-GRLLRRAIKAD----RVGSLILYGPPGVGKTTLARIIANHTRA--------HFSSLNAVL-----A-G 89 (725)
T ss_pred HhcCcHHHhhh-hHHHHHHHhcC----CCceEEEECCCCCCHHHHHHHHHHHhcC--------cceeehhhh-----h-h
Confidence 58999988753 22333333322 2236899999999999999999988533 222222211 0 0
Q ss_pred hHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 103 VSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
+....+. .......+.. ....++||||++.++...++.|++.++++
T Consensus 90 i~dir~~-i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g 136 (725)
T PRK13341 90 VKDLRAE-VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENG 136 (725)
T ss_pred hHHHHHH-HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence 1101111 1111111111 23579999999999999999999999874
No 130
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.31 E-value=7.7e-12 Score=112.23 Aligned_cols=134 Identities=7% Similarity=0.081 Sum_probs=91.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
+.++|++.++..+.+.+........ +++|+|++||||+++|++|.+.... . ..+|+.+++..+...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~~A~~ih~~s~r---~--~~pfv~vnc~~~~~~--- 390 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSF------PVLLCGEEGVGKALLAQAIHNESER---A--AGPYIAVNCQLYPDE--- 390 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCcCHHHHHHHHHHhCCc---c--CCCeEEEECCCCChH---
Confidence 3588999999999888888765433 5899999999999999999887433 1 356777776544210
Q ss_pred hhHHHHHHhHH--------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccc----cCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTN--------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI----SFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~--------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~----~~~~~~~Iltsn~~ 169 (202)
. ....+.+ ...+.+.....+++||||++.|+...|..|+++++++.++..- ...++.+|++||..
T Consensus 391 ~---~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 391 A---LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred H---HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 0 0000000 0001233344688999999999999999999999987654211 11256789998877
Q ss_pred hHH
Q psy1695 170 GTE 172 (202)
Q Consensus 170 ~~~ 172 (202)
...
T Consensus 468 l~~ 470 (638)
T PRK11388 468 LAM 470 (638)
T ss_pred HHH
Confidence 543
No 131
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.31 E-value=8.4e-12 Score=99.03 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 105 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (202)
+|..|+..+.+.+..+.. ...+++|+|++|||||+++.++++++.. .+...-++. ...+..... ..
T Consensus 80 ~q~~al~~a~~~~~~~~~------~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it--~~~l~~~l~---~~ 145 (244)
T PRK07952 80 GQMNALSKARQYVEEFDG------NIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT--VADIMSAMK---DT 145 (244)
T ss_pred hHHHHHHHHHHHHHhhcc------CCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE--HHHHHHHHH---HH
Confidence 344555555555444321 1126899999999999999999999866 332221221 111100000 00
Q ss_pred HH--HHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 106 YR--LQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 106 ~~--~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
+. ..-...+...+. ..+++||||++.... ...+.|.++++... ..+..+|+|||+..+.+.+.+.+
T Consensus 146 ~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry------~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 146 FSNSETSEEQLLNDLS--NVDLLVIDEIGVQTESRYEKVIINQIVDRRS------SSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred HhhccccHHHHHHHhc--cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH------hCCCCEEEeCCCCHHHHHHHhCh
Confidence 00 000112222233 357999999977654 34567888888632 14678899999999988776654
No 132
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.30 E-value=3.7e-11 Score=98.49 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=65.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 129 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD 129 (202)
.+++|+||+|||||+++.++|+.+.. .+....+++.. +..+... +...-.......+. ..+|+|||
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~~l~~~lk~~-------~~~~~~~~~l~~l~--~~dlLiID 224 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFPEFIRELKNS-------ISDGSVKEKIDAVK--EAPVLMLD 224 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHHHHHHHHHHH-------HhcCcHHHHHHHhc--CCCEEEEe
Confidence 47999999999999999999999876 44333333221 1111000 00000011122222 34799999
Q ss_pred cCCC--CChhHHHHHHH-hcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 130 EVDK--FPKGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 130 Eid~--~~~~~~~~L~~-~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
|+.. +++...+.++. +++.. + .++..+|+|||...+.+.+.+
T Consensus 225 DiG~e~~s~~~~~~ll~~Il~~R-~-----~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 225 DIGAEQMSSWVRDEVLGVILQYR-M-----QEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred cCCCccccHHHHHHHHHHHHHHH-H-----HCCCeEEEECCCCHHHHHHHH
Confidence 9954 45556655554 44542 1 156788999999999988765
No 133
>PRK08181 transposase; Validated
Probab=99.30 E-value=8.6e-12 Score=100.32 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=72.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
+++|+||+|||||++|.+++..+.. .+....|+.. ..+..... ....+.-.......+. ..+++||||++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~--~~L~~~l~---~a~~~~~~~~~l~~l~--~~dLLIIDDlg 177 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT--TDLVQKLQ---VARRELQLESAIAKLD--KFDLLILDDLA 177 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH--HHHHHHHH---HHHhCCcHHHHHHHHh--cCCEEEEeccc
Confidence 6999999999999999999998765 3322222211 11100000 0000000011111222 34799999998
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHH--HhhhHHHHhccc
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR--KSECIEFIFQCQ 193 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~--~~~~~r~~~~~~ 193 (202)
..+. ..++.|+++++... .+..+|+|||...+.+.+.+.+.. .+-.+|+..++.
T Consensus 178 ~~~~~~~~~~~Lf~lin~R~-------~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~ 235 (269)
T PRK08181 178 YVTKDQAETSVLFELISARY-------ERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHAT 235 (269)
T ss_pred cccCCHHHHHHHHHHHHHHH-------hCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCce
Confidence 7755 45678999998643 345789999999988877654322 222345544443
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=1.9e-11 Score=88.28 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 105 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (202)
|++..+..+...+... .+.+++++||+|+|||++++.+++.+.. .+ ..++.+....... ...
T Consensus 2 ~~~~~~~~i~~~~~~~--------~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~--~~v~~~~~~~~~~---~~~-- 63 (151)
T cd00009 2 GQEEAIEALREALELP--------PPKNLLLYGPPGTGKTTLARAIANELFR---PG--APFLYLNASDLLE---GLV-- 63 (151)
T ss_pred chHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHhhc---CC--CCeEEEehhhhhh---hhH--
Confidence 5565666655554321 2236899999999999999999998743 11 1122221111100 000
Q ss_pred HHHHhH----HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 106 YRLQLT----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 106 ~~~~l~----~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
...... .............++++||++.+++.....+.+.++...... ....+..+|+++|....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 64 VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-IDRENVRVIGATNRPLL 132 (151)
T ss_pred HHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCcccc
Confidence 000000 111111223345899999999998877788888877743110 12367888898887653
No 135
>KOG0727|consensus
Probab=99.30 E-value=7.1e-12 Score=98.26 Aligned_cols=134 Identities=15% Similarity=0.253 Sum_probs=81.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|-+..++.+.+++.--+.+. -+.+.|.+++++||||||||.+|+++|+... ..|+++..+.+..
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--------a~firvvgsefvq 227 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--------AAFIRVVGSEFVQ 227 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--------hheeeeccHHHHH
Confidence 35566666777777765421110 0134577899999999999999999998742 2455544433311
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt 165 (202)
.. .+ ....+...+......+...++||||+|.. +.++|..|+.++.. +++. ...|+-+|+.
T Consensus 228 ky---lg-egprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnq---mdgfdq~~nvkvima 300 (408)
T KOG0727|consen 228 KY---LG-EGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ---MDGFDQTTNVKVIMA 300 (408)
T ss_pred HH---hc-cCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh---ccCcCcccceEEEEe
Confidence 11 11 00112333334444555689999999654 33678888887765 2333 3468889999
Q ss_pred eCcChH
Q psy1695 166 SNSGGT 171 (202)
Q Consensus 166 sn~~~~ 171 (202)
||....
T Consensus 301 tnradt 306 (408)
T KOG0727|consen 301 TNRADT 306 (408)
T ss_pred cCcccc
Confidence 998653
No 136
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.30 E-value=6.1e-12 Score=107.40 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=78.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+..++.+.+++...+..+. +...|.+++|+||||||||++|+++|+.+.. .++.+..+.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--------~fi~V~~seL~ 254 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--------TFLRVVGSELI 254 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--------CEEEEecchhh
Confidence 4688999999999998875433211 1235568999999999999999999998533 33433333221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLF 164 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Il 164 (202)
.. +.+ ........+..........|++|||+|.+. ..++..++.++..- ++. ...++.+|+
T Consensus 255 ~k---~~G-e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---dg~~~~~~V~VI~ 327 (438)
T PTZ00361 255 QK---YLG-DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---DGFDSRGDVKVIM 327 (438)
T ss_pred hh---hcc-hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---hhhcccCCeEEEE
Confidence 11 111 111112223333333445799999997652 12344455554321 111 125778899
Q ss_pred eeCcCh
Q psy1695 165 LSNSGG 170 (202)
Q Consensus 165 tsn~~~ 170 (202)
+||...
T Consensus 328 ATNr~d 333 (438)
T PTZ00361 328 ATNRIE 333 (438)
T ss_pred ecCChH
Confidence 998643
No 137
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.30 E-value=1.6e-11 Score=107.27 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=91.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC--
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE-- 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 100 (202)
+++|+..+++.+.+.+........ ++++.|++||||+.+|++|.+.-.. . ..+|+.+++..+.....
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~------pVLI~GE~GTGKe~lA~~IH~~S~r---~--~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDA------TVLILGESGTGKELVAQAIHQLSGR---R--DFPFVAINCGAIAESLLEA 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCcCHHHHHHHHHHhcCc---C--CCCEEEeccccCChhHHHH
Confidence 499999999999999988765433 6899999999999999999876322 1 45777777665421100
Q ss_pred chhHHHHH-HhH----HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChH
Q psy1695 101 NHVSLYRL-QLT----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 101 ~~~~~~~~-~l~----~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~ 171 (202)
..++ +.+ .+. ..-.+.+.....+.+||||++.++...|..|+++|+++.+... ....++.+|++||....
T Consensus 282 eLFG-~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~ 360 (526)
T TIGR02329 282 ELFG-YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT 360 (526)
T ss_pred HhcC-CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH
Confidence 0000 000 000 0001123334457899999999999999999999998765421 11234578898887754
Q ss_pred H
Q psy1695 172 E 172 (202)
Q Consensus 172 ~ 172 (202)
.
T Consensus 361 ~ 361 (526)
T TIGR02329 361 T 361 (526)
T ss_pred H
Confidence 3
No 138
>KOG0745|consensus
Probab=99.30 E-value=1.3e-11 Score=102.86 Aligned_cols=145 Identities=23% Similarity=0.301 Sum_probs=92.2
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHh---c--------------c-----------------CC-----------
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQ---N--------------R-----------------YH----------- 47 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~---~--------------~-----------------~~----------- 47 (202)
..++-+.|++.|+||+.|++.+.-++.++.. + . .+
T Consensus 136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~l 215 (564)
T KOG0745|consen 136 PKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKAL 215 (564)
T ss_pred hHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccc
Confidence 5788899999999999999988777755310 0 0 00
Q ss_pred C----CCce---EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHH-HHH---
Q psy1695 48 N----TKAL---AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW-IIS--- 116 (202)
Q Consensus 48 ~----~~pl---~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--- 116 (202)
+ +.-+ .+|+.||+|+|||.+|+.||+.+.- +|.-.++..+. ..+|++.-.+.+... +.+
T Consensus 216 d~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldV--------PfaIcDcTtLT--QAGYVGeDVEsvi~KLl~~A~~ 285 (564)
T KOG0745|consen 216 DEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDV--------PFAICDCTTLT--QAGYVGEDVESVIQKLLQEAEY 285 (564)
T ss_pred cccccceeeecccEEEECCCCCchhHHHHHHHHHhCC--------CeEEecccchh--hcccccccHHHHHHHHHHHccC
Confidence 0 0111 4899999999999999999999743 44444444332 235555222211111 111
Q ss_pred hhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccc--------------cccCCceEEEEeeC
Q psy1695 117 NVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYN--------------QISFQNTIFLFLSN 167 (202)
Q Consensus 117 ~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~--------------~~~~~~~~~Iltsn 167 (202)
.+..+..+||+|||+||+.. .+|..|++++|-..+.. .+|..+..||..-.
T Consensus 286 nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA 364 (564)
T KOG0745|consen 286 NVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA 364 (564)
T ss_pred CHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEeccc
Confidence 13344559999999999862 58999999998543221 13677777766543
No 139
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=108.14 Aligned_cols=161 Identities=18% Similarity=0.183 Sum_probs=93.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
.++.|.++|++.+.+.+.-. .+|. +.+.|.+++++||||||||.+|+++|-+..-+--.-..++|++.+..
T Consensus 150 ~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG--- 225 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG--- 225 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC---
Confidence 46899999999997777542 2222 13578899999999999999999999884221000012334433321
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
.....+ .....++-+..| +|++|||+|.... ...|.|+.-||.. ..+..++
T Consensus 226 -vGAsRV-------RdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF------~~~~gvi 290 (596)
T COG0465 226 -VGASRV-------RDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF------GGNEGVI 290 (596)
T ss_pred -CCcHHH-------HHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC------CCCCceE
Confidence 000011 222223333344 7999999977643 2456666555542 2233344
Q ss_pred EEeeCcChHHHHHHHHH------HHHhhhHHHHhccchhHHHhhc
Q psy1695 163 LFLSNSGGTEIMNTFLE------LRKSECIEFIFQCQPLKVYLKK 201 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~------~~~~~~~r~~~~~~~~~~~~~~ 201 (202)
|++....++.+..++++ ...-..+++..+.+.|++++|+
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence 44444444444444432 2223345777788889999886
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=1.9e-11 Score=112.37 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=79.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~ 99 (202)
+.++||+..++.+...+.+...+ +.+|+||||||||++++.+|+.+.... +.. ....++..+++.+. ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~--------n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-ag 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQN--------NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-AG 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcC--------ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-cc
Confidence 35899999887777766543211 568999999999999999999975410 000 01122222232221 11
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
..+.+.+.+.+...+.+........|+||||++.+.. ++.+.|.+.+++| ...+|.+|+..
T Consensus 258 ~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G---------~l~~IgaTT~~ 326 (852)
T TIGR03345 258 ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG---------ELRTIAATTWA 326 (852)
T ss_pred cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC---------CeEEEEecCHH
Confidence 2334445454454444433333458999999988853 3445788888884 56777877653
No 141
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.28 E-value=2e-11 Score=101.09 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=91.4
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (202)
.+.++|...++..+.+.+.+....+. +++++|++||||+++|+++...... . ..+|+.+++..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~------pVlI~GE~GtGK~~lA~~iH~~s~r---~--~~pfv~v~c~~~~~~-- 71 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDK------PVLIIGERGTGKELIASRLHYLSSR---W--QGPFISLNCAALNEN-- 71 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHHhCCc---c--CCCeEEEeCCCCCHH--
Confidence 35699999999999999998865432 6899999999999999999876322 1 356777776543210
Q ss_pred chhHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEe
Q psy1695 101 NHVSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFL 165 (202)
Q Consensus 101 ~~~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Ilt 165 (202)
. ....+.+ ...+.+.....+.++|||++.++...|..|+.+++++.+.. + .-..++.+|++
T Consensus 72 -~---~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 147 (326)
T PRK11608 72 -L---LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCA 147 (326)
T ss_pred -H---HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEe
Confidence 0 0000000 00112334456889999999999999999999999876432 1 11235788898
Q ss_pred eCcChH
Q psy1695 166 SNSGGT 171 (202)
Q Consensus 166 sn~~~~ 171 (202)
|+....
T Consensus 148 s~~~l~ 153 (326)
T PRK11608 148 TNADLP 153 (326)
T ss_pred CchhHH
Confidence 887644
No 142
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.28 E-value=2.2e-11 Score=106.56 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=91.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|+..+++.+.+.+......+. +++++|++||||+++|++|...... . ..+++.+++..+... .
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~------pVlI~Ge~GtGK~~~A~~ih~~s~r---~--~~p~v~v~c~~~~~~---~ 253 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDL------NVLILGETGVGKELVARAIHAASPR---A--DKPLVYLNCAALPES---L 253 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHhCCc---C--CCCeEEEEcccCChH---H
Confidence 599999999999999998765433 6899999999999999999987432 1 346777766544211 0
Q ss_pred hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695 103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN 167 (202)
Q Consensus 103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn 167 (202)
....+.+ .-.+.+.....+.+||||++.++...|..|+++++++.+.. + ....++.+|++||
T Consensus 254 ---~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 254 ---AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred ---HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 0000000 00012333445789999999999999999999999876432 1 1234678999998
Q ss_pred cChH
Q psy1695 168 SGGT 171 (202)
Q Consensus 168 ~~~~ 171 (202)
...+
T Consensus 331 ~~l~ 334 (509)
T PRK05022 331 RDLR 334 (509)
T ss_pred CCHH
Confidence 7754
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=3.6e-12 Score=92.70 Aligned_cols=104 Identities=15% Similarity=0.301 Sum_probs=60.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccc------ccCCC---CchhHHHHHHhHHHHHHhhhhCCc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR------IHFPN---ENHVSLYRLQLTNWIISNVTACDR 123 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~l~~~~~ 123 (202)
+++|+||||||||++|+.+|+.+.. ++..+.+.. +.+.. .+... +. .+.+...+. ..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~--------~~~~i~~~~~~~~~dl~g~~~~~~~~~~-~~---~~~l~~a~~--~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR--------PVIRINCSSDTTEEDLIGSYDPSNGQFE-FK---DGPLVRAMR--KG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC--------EEEEEE-TTTSTHHHHHCEEET-TTTTC-EE---E-CCCTTHH--EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc--------ceEEEEeccccccccceeeeeecccccc-cc---ccccccccc--ce
Confidence 4799999999999999999999733 111111100 00000 00000 00 000000111 34
Q ss_pred eEEEEecCCCCChhHHHHHHHhcccCccc--cc---ccCC-------ceEEEEeeCcCh
Q psy1695 124 AIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---ISFQ-------NTIFLFLSNSGG 170 (202)
Q Consensus 124 ~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---~~~~-------~~~~Iltsn~~~ 170 (202)
.+++|||++++++++++.|+++++++.+. .. .... +..+|+|+|...
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 79999999999999999999999988654 11 1111 478999999877
No 144
>PRK06526 transposase; Provisional
Probab=99.27 E-value=3.2e-11 Score=96.41 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=67.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE 130 (202)
.++|+||||||||++|.+++..+.. .+....|.... +..+..... .+ .+...+. .+ ...+++||||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t~~~l~~~l~~~~~--~~----~~~~~l~-~l--~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFATAAQWVARLAAAHH--AG----RLQAELV-KL--GRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhhHHHHHHHHHHHHh--cC----cHHHHHH-Hh--ccCCEEEEcc
Confidence 6899999999999999999998765 33222221110 000000000 00 0011111 11 2358999999
Q ss_pred CCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 131 VDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 131 id~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
++..+ +..++.|.++++... .+..+|+|||...+.+.+.+.+
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~-------~~~s~IitSn~~~~~w~~~~~d 211 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRY-------ERASLIVTSNKPFGRWGEVFGD 211 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHH-------hcCCEEEEcCCCHHHHHHHcCC
Confidence 99875 567788999887633 4456899999998887766544
No 145
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=2.5e-11 Score=95.79 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=59.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+|||||||||+++++++++.. .+....|+..... .. . ...+.+.+. ..++++|||++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~-------~~---~----~~~~~~~~~--~~dlLilDDi~ 101 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKS-------QY---F----SPAVLENLE--QQDLVCLDDLQ 101 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHh-------hh---h----hHHHHhhcc--cCCEEEEeChh
Confidence 4799999999999999999999765 3222222222100 00 0 111112222 34799999999
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.... ..+..|+.+++... +....++|+|+|..++.+..
T Consensus 102 ~~~~~~~~~~~l~~l~n~~~-----~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 102 AVIGNEEWELAIFDLFNRIK-----EQGKTLLLISADCSPHALSI 141 (229)
T ss_pred hhcCChHHHHHHHHHHHHHH-----HcCCcEEEEeCCCChHHccc
Confidence 8753 34456777666432 11345667889988876653
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.26 E-value=2.5e-11 Score=110.32 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=78.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~ 99 (202)
+.++||+..++.+.+.+.+.. ..+++|+||||||||++++.+|+.+.... +... ...++.++++.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~- 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG- 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh-
Confidence 469999999988776665432 22578999999999999999999974410 0000 112233332222110
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC---------hhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~---------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
..+.+.+.+.+...+. .+......|+||||++.+. .++++.|.+.|++| +..+|.+||.
T Consensus 253 ~~~~g~~e~~l~~i~~-~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---------~i~~IgaTt~ 320 (731)
T TIGR02639 253 TKYRGDFEERLKAVVS-EIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---------KLRCIGSTTY 320 (731)
T ss_pred ccccchHHHHHHHHHH-HHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---------CeEEEEecCH
Confidence 1222334333333333 2333445799999998774 34678898888874 5677888775
No 147
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.26 E-value=1.5e-11 Score=101.99 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=78.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh---------hhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV---------HKFN 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~---------~~~~ 92 (202)
..++||++++..+..++..- +.-+++|.||+|||||++|+++++.+.+..--. ..+|. ...+
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~-~~pf~~~p~~p~~~~~~~ 87 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK-DDPFNSHPSDPELMSDEV 87 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC-CCCCCCCCCChhhhchhh
Confidence 35999999888877655531 122689999999999999999999976521000 00111 0000
Q ss_pred c-------------------cccC--CCCchhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHHHH
Q psy1695 93 S-------------------RIHF--PNENHVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDVII 143 (202)
Q Consensus 93 ~-------------------~~~~--~~~~~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~L~ 143 (202)
. .+.. .....+|.. ++...+ .+.+..+..+++++||++++++..|+.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 88 REAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 0 0000 000001100 001111 11233444589999999999999999999
Q ss_pred HhcccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695 144 PFIDHHAVY---NQI---SFQNTIFLFLSNSGG 170 (202)
Q Consensus 144 ~~le~~~~~---~~~---~~~~~~~Iltsn~~~ 170 (202)
+.|+++..+ .+. --...++|.|.|...
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~e 198 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEE 198 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCccc
Confidence 999986432 222 113455566666553
No 148
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.1e-11 Score=97.46 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=67.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 128 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii 128 (202)
+-+++|+||||||||++|.+|++.+.. .|...-|+... +..+...... + .....+...+ +..+|+||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~~el~~~Lk~~~~~--~----~~~~~l~~~l--~~~dlLIi 173 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITAPDLLSKLKAAFDE--G----RLEEKLLREL--KKVDLLII 173 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhc--C----chHHHHHHHh--hcCCEEEE
Confidence 337999999999999999999999875 44333333221 1111000000 0 0011122212 33589999
Q ss_pred ecCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 129 DEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 129 DEid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
||+...+ ....+.+.+++..... +... |+|||...+.+.+.+.
T Consensus 174 DDlG~~~~~~~~~~~~~q~I~~r~~------~~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 174 DDIGYEPFSQEEADLLFQLISRRYE------SRSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred ecccCccCCHHHHHHHHHHHHHHHh------hccc-eeecCCChHHHHhhcc
Confidence 9997754 4567788887776431 2333 9999999888766654
No 149
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=1e-11 Score=106.33 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=97.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN-- 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 99 (202)
++++|...++..+.+.+++....+. .+|+.|++||||..+|++|.+.-.+ . ..+|+.++++.+....
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A~tds------tVLi~GESGTGKElfA~~IH~~S~R---~--~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIAKTDS------TVLILGESGTGKELFARAIHNLSPR---A--NGPFIAINCAAIPETLLE 313 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhcCCCC------cEEEecCCCccHHHHHHHHHhcCcc---c--CCCeEEEecccCCHHHHH
Confidence 3699999999999888888765543 7999999999999999999887333 2 5688888886553221
Q ss_pred CchhHHHHHHhHHHHHHhhh--------hCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695 100 ENHVSLYRLQLTNWIISNVT--------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN 167 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~--------~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn 167 (202)
...+| |. .++++++.. .+..+.+|+|||..||...|..|+++|++..+.. | .-..++.+|.+||
T Consensus 314 SELFG-ye---~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 314 SELFG-YE---KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred HHHhC-cC---CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccC
Confidence 01111 21 122223322 2334789999999999999999999999987643 1 2445778999999
Q ss_pred cChHH
Q psy1695 168 SGGTE 172 (202)
Q Consensus 168 ~~~~~ 172 (202)
.....
T Consensus 390 ~nL~~ 394 (560)
T COG3829 390 RNLEK 394 (560)
T ss_pred cCHHH
Confidence 87654
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.25 E-value=1.9e-11 Score=101.05 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=77.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCccchhhhh----c-----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKF----N----- 92 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~----~----- 92 (202)
.++||+.+++.+.-++.. .+ ..+++|.|+||||||++|++++..+.+-.. .+..-.+.... .
T Consensus 9 ~i~Gq~~~~~~l~~~~~~--~~------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~ 80 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID--PG------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS 80 (334)
T ss_pred HhCCHHHHHHHHHHHHhc--cC------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC
Confidence 589999999887654321 11 116999999999999999999999743100 01000000000 0
Q ss_pred cc----------ccC--CCCchhHH--HHHHhH-H---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc--
Q psy1695 93 SR----------IHF--PNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-- 152 (202)
Q Consensus 93 ~~----------~~~--~~~~~~~~--~~~~l~-~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~-- 152 (202)
.. ++. +....+|. +...+. + .-.+.+..+..+++++||++++++..++.|++.|+++.++
T Consensus 81 ~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~ 160 (334)
T PRK13407 81 TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVE 160 (334)
T ss_pred CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEE
Confidence 00 000 00111220 111000 0 0011222333479999999999999999999999988632
Q ss_pred -ccc---cCCceEEEEeeCcCh
Q psy1695 153 -NQI---SFQNTIFLFLSNSGG 170 (202)
Q Consensus 153 -~~~---~~~~~~~Iltsn~~~ 170 (202)
.+. --...++|.|+|...
T Consensus 161 r~G~~~~~p~rfiviAt~NP~e 182 (334)
T PRK13407 161 REGLSIRHPARFVLVGSGNPEE 182 (334)
T ss_pred ECCeEEecCCCEEEEecCCccc
Confidence 222 113455666667643
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.25 E-value=3.9e-11 Score=99.19 Aligned_cols=111 Identities=11% Similarity=0.189 Sum_probs=66.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch-hHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH-VSLYRLQLTNWIISNVTACDRAIFIFDEV 131 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~viiiDEi 131 (202)
+++|+||+|||||+||.++|+.+.. .+....|+.. ..+....... .....+ .....+.+.. .+++||||+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~---~g~~V~y~t~--~~l~~~l~~~~~~~~~~--~~~~~~~l~~--~DLLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLD---RGKSVIYRTA--DELIEILREIRFNNDKE--LEEVYDLLIN--CDLLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEEH--HHHHHHHHHHHhccchh--HHHHHHHhcc--CCEEEEecc
Confidence 6999999999999999999999876 4322222211 1110000000 000000 0001122332 479999999
Q ss_pred CC--CChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 132 DK--FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 132 d~--~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
.. .++..++.|+.+++.... .+..+|+|||...+.+.+.+.
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~------~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLL------RQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHHHh
Confidence 54 456778889998887421 346789999999988876543
No 152
>KOG0744|consensus
Probab=99.24 E-value=9.2e-12 Score=100.44 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC-ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCc-eEEEEec
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR-AIFIFDE 130 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~viiiDE 130 (202)
.++++||||||||++++++|+.|.-+....+ ....++++...+...+-+..+.....+.+.+.+.+..... -.++|||
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence 4899999999999999999999865321111 2223333333322222222222333445556665555433 4456899
Q ss_pred CCCCCh---------------hHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 131 VDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 131 id~~~~---------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
++.+.. .+.|.|+.-||+-. .+.|+++..|||+....
T Consensus 259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----~~~NvliL~TSNl~~si 310 (423)
T KOG0744|consen 259 VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----RYPNVLILATSNLTDSI 310 (423)
T ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEeccchHHHH
Confidence 976522 36788888777643 45788888888887653
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=3.9e-11 Score=110.47 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~ 99 (202)
+.++||+..++.+.+.+.+...+ .++|+||||||||++++.+|..+.... +... ...++..+++.+.. .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~--------n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-g 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-G 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcC--------ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh-c
Confidence 35999999888887777664321 468999999999999999999975410 0000 11222222222211 1
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
..+.+.+.+.+...+.+........|+||||++.+.. ++++.|.+.+++| ...+|.+|+..+
T Consensus 249 ~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g---------~l~~IgaTt~~e 318 (857)
T PRK10865 249 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------ELHCVGATTLDE 318 (857)
T ss_pred cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC---------CCeEEEcCCCHH
Confidence 1222333333333333322223457999999988853 3688898888874 566777777654
No 154
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=1.1e-10 Score=102.41 Aligned_cols=136 Identities=8% Similarity=0.049 Sum_probs=90.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP---- 98 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---- 98 (202)
.++|...++..+.+.+++...... +++++|++||||+++|+++...... . ..+|+.++++.+...
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~------pvlI~GE~GtGK~~lA~aiH~~s~r---~--~~pfv~inca~~~~~~~e~ 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDA------PLLITGDTGTGKDLLAYACHLRSPR---G--KKPFLALNCASIPDDVVES 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCC------CEEEECCCCccHHHHHHHHHHhCCC---C--CCCeEEeccccCCHHHHHH
Confidence 699999999999988887655433 5899999999999999999776332 1 346676666544210
Q ss_pred -----CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695 99 -----NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 169 (202)
Q Consensus 99 -----~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~ 169 (202)
.++......+ .-.+.+..+..+.++|||++.+++..|..|+++++++.+... ....++.+|++|+..
T Consensus 274 elFG~~~~~~~~~~~----~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALE----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCccc----CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 0000000000 001123334457899999999999999999999998754321 123466788888776
Q ss_pred hHHH
Q psy1695 170 GTEI 173 (202)
Q Consensus 170 ~~~i 173 (202)
...+
T Consensus 350 l~~l 353 (520)
T PRK10820 350 LVEL 353 (520)
T ss_pred HHHH
Confidence 5443
No 155
>PRK08727 hypothetical protein; Validated
Probab=99.24 E-value=6.9e-11 Score=93.49 Aligned_cols=131 Identities=11% Similarity=0.157 Sum_probs=75.7
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
+...+.|...+...+..... +. ....++|+||+||||||++++++..+.. .+....|+.. ..
T Consensus 18 f~~f~~~~~n~~~~~~~~~~----~~----~~~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~--~~----- 79 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA----GQ----SSDWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPL--QA----- 79 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh----cc----CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeH--HH-----
Confidence 44457777766555433222 11 1124899999999999999999998765 3322222211 10
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
....+.. ..+.+. ..++|+|||++.+.. ..+..++.+++... .+...+|+|||..++.+....
T Consensus 80 ------~~~~~~~-~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~------~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 80 ------AAGRLRD-ALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRAR------AAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred ------hhhhHHH-HHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHH------HcCCeEEEECCCChhhhhhhh
Confidence 0000111 111222 247999999998863 44556666665432 034568999999888776544
Q ss_pred HHHHHh
Q psy1695 178 LELRKS 183 (202)
Q Consensus 178 ~~~~~~ 183 (202)
-++..+
T Consensus 145 ~dL~SR 150 (233)
T PRK08727 145 PDLRSR 150 (233)
T ss_pred HHHHHH
Confidence 444443
No 156
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.8e-11 Score=103.70 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=97.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--C
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~ 100 (202)
.+||+..|+..+.+.+.--...+. .+|+.|++||||-.+|++|.+.-.. . ..+|+.++++.+..+. .
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~~S~R---~--~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQLSPR---R--DKPFVKLNCAALPESLLES 292 (550)
T ss_pred cceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHhhCcc---c--CCCceeeeccccchHHHHH
Confidence 699999999999999887665433 7999999999999999999988433 2 5678888887664321 0
Q ss_pred chhHHHHHHhHHHHHHhhhh-------CCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTA-------CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~-------~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~ 169 (202)
..+| +. ++.+++++.. +..+.+|+|||..+|...|..|+.+|.++.+-. | .-.-.+.+|..||..
T Consensus 293 ELFG-He---KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 293 ELFG-HE---KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred HHhc-cc---ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh
Confidence 1111 11 2333333333 234889999999999999999999999987642 1 233467789999987
Q ss_pred hHH
Q psy1695 170 GTE 172 (202)
Q Consensus 170 ~~~ 172 (202)
-+.
T Consensus 369 L~~ 371 (550)
T COG3604 369 LEE 371 (550)
T ss_pred HHH
Confidence 543
No 157
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-11 Score=103.35 Aligned_cols=142 Identities=11% Similarity=0.148 Sum_probs=99.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695 16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 95 (202)
Q Consensus 16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 95 (202)
+...-.+.++|.+...+.+.+.++.... ..+++|+.|++||||+.+|+.|+.. .. .....+|+.++++.+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap------~~~~vLi~GetGtGKel~A~~iH~~-s~---r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAP------SGLPVLIIGETGTGKELFARLIHAL-SA---RRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhCC------CCCcEEEecCCCccHHHHHHHHHHh-hh---cccCCCEEEEEHHHh
Confidence 3344556899999999999999998432 3346899999999999999999944 22 113678888888766
Q ss_pred cCCCCc--hhHHHHHHhHHHHHH-------hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc----cccCCceEE
Q psy1695 96 HFPNEN--HVSLYRLQLTNWIIS-------NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIF 162 (202)
Q Consensus 96 ~~~~~~--~~~~~~~~l~~~~~~-------~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~----~~~~~~~~~ 162 (202)
...... .+| +. .+.+++ .+.....+.+++|||.++|+..|..|+++||++.+.. +....++.+
T Consensus 142 ~en~~~~eLFG-~~---kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRl 217 (403)
T COG1221 142 SENLQEAELFG-HE---KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRL 217 (403)
T ss_pred CcCHHHHHHhc-cc---cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCcee
Confidence 433211 111 11 111112 2333445899999999999999999999999998752 235567788
Q ss_pred EEeeCcChH
Q psy1695 163 LFLSNSGGT 171 (202)
Q Consensus 163 Iltsn~~~~ 171 (202)
|.+||-..+
T Consensus 218 i~AT~~~l~ 226 (403)
T COG1221 218 ICATTEDLE 226 (403)
T ss_pred eeccccCHH
Confidence 888876644
No 158
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.22 E-value=1e-10 Score=106.56 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=79.4
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++.|.+.+++.+.+.+...+..+. .-..|.+++|+||||||||++|+++|+.+.. .++.+....+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--------~~i~i~~~~i~~ 250 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--------YFISINGPEIMS 250 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--------eEEEEecHHHhc
Confidence 488999999999888765332211 0124557999999999999999999998533 333333332221
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
.. .+..... ...+.+........|++|||+|.+.+ .+++.|+.+|+.-. .....++|.+|
T Consensus 251 ~~---~g~~~~~-l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----~~~~vivI~at 321 (733)
T TIGR01243 251 KY---YGESEER-LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----GRGRVIVIGAT 321 (733)
T ss_pred cc---ccHHHHH-HHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----cCCCEEEEeec
Confidence 11 1111111 22233333334457999999987642 35677888886532 11456667777
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 322 n~~~ 325 (733)
T TIGR01243 322 NRPD 325 (733)
T ss_pred CChh
Confidence 7643
No 159
>KOG0729|consensus
Probab=99.21 E-value=4.4e-11 Score=94.50 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=86.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|-.+.++.+.+.+..-+.++. ....|.+++++||||||||.+|+++|+.. ..-|+++..+.+..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt--------dacfirvigselvq 249 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT--------DACFIRVIGSELVQ 249 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc--------CceEEeehhHHHHH
Confidence 456677778888777765333222 13456789999999999999999999873 23466665554422
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCccccccc-CCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQIS-FQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~-~~~~~~Ilt 165 (202)
.|++ ....+...+.++.+.....++||||+|... .++|..++.++.. .++.+ -.|.-+.+.
T Consensus 250 ---kyvg-egarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q---ldgfdprgnikvlma 322 (435)
T KOG0729|consen 250 ---KYVG-EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ---LDGFDPRGNIKVLMA 322 (435)
T ss_pred ---HHhh-hhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh---ccCCCCCCCeEEEee
Confidence 2333 222345667777676777999999997653 3577777776654 22322 256667777
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
||...
T Consensus 323 tnrpd 327 (435)
T KOG0729|consen 323 TNRPD 327 (435)
T ss_pred cCCCC
Confidence 77653
No 160
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=9.8e-11 Score=96.79 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=71.6
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhhcc---ccc--CCC-----Cc----hhHHHHH
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKFNS---RIH--FPN-----EN----HVSLYRL 108 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~~~---~~~--~~~-----~~----~~~~~~~ 108 (202)
+.|.+++|+||+|+|||++|+.+|+.+.|..+. +.+..+..+... ++. .+. .+ .++ .+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~--id 96 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK--ID 96 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC--HH
Confidence 367789999999999999999999999873211 111111111111 110 000 00 111 11
Q ss_pred HhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 109 QLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 109 ~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+ .+.+.+.+.. +++.|+++|+++.+++..++.|++.|++++ .+++||++|+...
T Consensus 97 ~-iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------~~~~~Ilvth~~~ 154 (325)
T PRK08699 97 A-VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-------PQVVFLLVSHAAD 154 (325)
T ss_pred H-HHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-------CCCEEEEEeCChH
Confidence 2 2223333433 345899999999999999999999999976 6688888887654
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.21 E-value=1.7e-10 Score=98.10 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=72.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhhh----ccccc-CCCCchhHHHHH---HhHHHHHHhhhh-C
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHKF----NSRIH-FPNENHVSLYRL---QLTNWIISNVTA-C 121 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~~----~~~~~-~~~~~~~~~~~~---~l~~~~~~~l~~-~ 121 (202)
+++|+||||||||++|+.+|..+.. ... ...++.+. ...+. +..+..++ |.. .+......+... .
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~---~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg-y~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTG---EKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG-FRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcC---CcccceeeEEeecccccHHHHhcccCCCCCC-eEecCchHHHHHHHHHhccc
Confidence 6899999999999999999998754 110 00111110 01111 11111111 110 011112222111 1
Q ss_pred CceEEEEecCCCCChh-HHHHHHHhcccCcc----------cc----c-ccCCceEEEEeeCcChHHHHHHHHHHHHhhh
Q psy1695 122 DRAIFIFDEVDKFPKG-LLDVIIPFIDHHAV----------YN----Q-ISFQNTIFLFLSNSGGTEIMNTFLELRKSEC 185 (202)
Q Consensus 122 ~~~viiiDEid~~~~~-~~~~L~~~le~~~~----------~~----~-~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~ 185 (202)
...++||||+++.+.+ ++..++++||...- .. . .--.|..+|.|.|.....+. .+-.+.+
T Consensus 272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~----~lD~Alr 347 (459)
T PRK11331 272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA----VVDYALR 347 (459)
T ss_pred CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh----hccHHHH
Confidence 2479999999999965 68889999986310 00 0 13367888999998875432 2455556
Q ss_pred HHHHh
Q psy1695 186 IEFIF 190 (202)
Q Consensus 186 ~r~~~ 190 (202)
+||.+
T Consensus 348 RRF~f 352 (459)
T PRK11331 348 RRFSF 352 (459)
T ss_pred hhhhe
Confidence 66655
No 162
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.21 E-value=7.6e-11 Score=93.37 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=57.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+||+||||||+++++++.+.. .+....|+..... .. +. ..+.+.+.. .++++|||++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~---------~~-~~----~~~~~~~~~--~dlliiDdi~ 107 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKR---------AW-FV----PEVLEGMEQ--LSLVCIDNIE 107 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHH---------hh-hh----HHHHHHhhh--CCEEEEeChh
Confidence 6899999999999999999998664 3222222222110 00 10 111122222 3689999999
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.+.. ..+..|..++.... +..+..+|+||+..+..+..
T Consensus 108 ~~~~~~~~~~~lf~l~n~~~-----e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRIL-----ESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred hhcCCHHHHHHHHHHHHHHH-----HcCCCeEEEeCCCChHHcCc
Confidence 9864 33444444443321 01345688899887766543
No 163
>KOG0726|consensus
Probab=99.20 E-value=6.8e-11 Score=94.45 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=91.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|-+..++.+.+++.--+.+|. ..+.|.++++||+||||||.+|+++|+.. +..|+++..+.+..
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT--------SATFlRvvGseLiQ 257 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT--------SATFLRVVGSELIQ 257 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc--------chhhhhhhhHHHHH
Confidence 466778788888888865443332 13456789999999999999999999873 23566665554432
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt 165 (202)
...+. ...+.++++........+|+||||||.... ++|..++.+|.. .++. +-..+-+|++
T Consensus 258 kylGd----GpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ---ldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 258 KYLGD----GPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ---LDGFDSRGDVKVIMA 330 (440)
T ss_pred HHhcc----chHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh---ccCccccCCeEEEEe
Confidence 22111 112344455555555568999999976532 567777777654 2233 2356678888
Q ss_pred eCcChHHHHHHHHHHHHhhhHH
Q psy1695 166 SNSGGTEIMNTFLELRKSECIE 187 (202)
Q Consensus 166 sn~~~~~i~~~~~~~~~~~~~r 187 (202)
||.-... ...+.+.||.+
T Consensus 331 Tnrie~L----DPaLiRPGrID 348 (440)
T KOG0726|consen 331 TNRIETL----DPALIRPGRID 348 (440)
T ss_pred ccccccc----CHhhcCCCccc
Confidence 8875431 12246667654
No 164
>KOG0737|consensus
Probab=99.20 E-value=6.3e-11 Score=97.09 Aligned_cols=163 Identities=18% Similarity=0.144 Sum_probs=88.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++=|-+..++.+.+.+.-.+..+. --+.|.+++++||||||||.+|+++|+... ..|+.+.++.+.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--------a~fInv~~s~lt 164 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--------ANFINVSVSNLT 164 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--------CCcceeeccccc
Confidence 355666777777666654222211 023566899999999999999999999942 356666666554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-------hhH----HHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-------KGL----LDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-------~~~----~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
..+ .+ -.+.+.+.+......-...+|+|||+|.+- .++ -+.++...+.-. ..+...++++.+
T Consensus 165 ~KW---fg-E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~---s~~~~rVlVlgA 237 (386)
T KOG0737|consen 165 SKW---FG-EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS---SKDSERVLVLGA 237 (386)
T ss_pred hhh---HH-HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc---CCCCceEEEEeC
Confidence 322 12 122233444443334445899999997663 111 112222111100 012224555556
Q ss_pred eCcChHHHHHHHHHH----HHhhhHHHHhccchhHHHhhc
Q psy1695 166 SNSGGTEIMNTFLEL----RKSECIEFIFQCQPLKVYLKK 201 (202)
Q Consensus 166 sn~~~~~i~~~~~~~----~~~~~~r~~~~~~~~~~~~~~ 201 (202)
||...+ +-++.+.. ..-+-|+-.-|-+.|+++||+
T Consensus 238 TNRP~D-lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 238 TNRPFD-LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred CCCCcc-HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence 666544 34443321 112334455566779999986
No 165
>PRK06921 hypothetical protein; Provisional
Probab=99.18 E-value=5.4e-10 Score=90.02 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=62.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccC-cCccchhhhhcccccCCCCchhHHHHHHh--HHHHHHhhhhCCceEEEEe
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIHFPNENHVSLYRLQL--TNWIISNVTACDRAIFIFD 129 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~~~~~~viiiD 129 (202)
.++|+||+|+|||+|+.++++.+.. . +...-|+.. ..+ +......+ .......+ ...++||||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~---~~g~~v~y~~~--~~l-------~~~l~~~~~~~~~~~~~~--~~~dlLiID 184 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMR---KKGVPVLYFPF--VEG-------FGDLKDDFDLLEAKLNRM--KKVEVLFID 184 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhh---hcCceEEEEEH--HHH-------HHHHHHHHHHHHHHHHHh--cCCCEEEEe
Confidence 6899999999999999999999765 3 222212111 000 00000000 01111222 234899999
Q ss_pred cCCC-------CChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 130 EVDK-------FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 130 Eid~-------~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
|++. .+...++.|..+++.... ++..+|+|||...+.+.+
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~------~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYL------NHKPILISSELTIDELLD 231 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHhh
Confidence 9943 445566778888876420 245678999999988765
No 166
>KOG0990|consensus
Probab=99.18 E-value=4.2e-11 Score=96.46 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=88.6
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 86 (202)
|+..|+...|. .+++|++.+..+.+. ... ++.| +++|+||||+|||+...+.|+.+++.++ ..+.
T Consensus 31 wvekyrP~~l~-----dv~~~~ei~st~~~~----~~~---~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~--~~~m 95 (360)
T KOG0990|consen 31 WVEKYRPPFLG-----IVIKQEPIWSTENRY----SGM---PGLP-HLLFYGPPGTGKTSTILANARDFYSPHP--TTSM 95 (360)
T ss_pred CccCCCCchhh-----hHhcCCchhhHHHHh----ccC---CCCC-cccccCCCCCCCCCchhhhhhhhcCCCC--chhH
Confidence 44555555554 588888777666544 222 2355 7999999999999999999999887311 1222
Q ss_pred hhhhhcccccCCCCchhHHHHHHhHHHHH--Hhhh-hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695 87 FVHKFNSRIHFPNENHVSLYRLQLTNWII--SNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL 163 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~-~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I 163 (202)
....+.+.-.+.+ .+. .+........ ..+. .....++|+||+|.|..++||+|.++++... .++.|+
T Consensus 96 ~lelnaSd~rgid--~vr-~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-------~n~rF~ 165 (360)
T KOG0990|consen 96 LLELNASDDRGID--PVR-QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-------ANTRFA 165 (360)
T ss_pred HHHhhccCccCCc--chH-HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-------cceEEE
Confidence 3333333221111 111 1110010000 0111 1356899999999999999999999998876 788999
Q ss_pred EeeCcChHH
Q psy1695 164 FLSNSGGTE 172 (202)
Q Consensus 164 ltsn~~~~~ 172 (202)
+++|.....
T Consensus 166 ii~n~~~ki 174 (360)
T KOG0990|consen 166 TISNPPQKI 174 (360)
T ss_pred EeccChhhc
Confidence 999886654
No 167
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.17 E-value=1.8e-10 Score=104.16 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=90.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--C
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~ 100 (202)
.++|+..+++.+.+.+........ +++++|++|||||++|++|...... . ..+++.+++..+.... .
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~s~r---~--~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNLSGR---N--NRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHhcCC---C--CCCeEEEecccCChhHhhh
Confidence 599999999999999988764432 6899999999999999999887433 2 3456655554331100 0
Q ss_pred chhH----HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHH
Q psy1695 101 NHVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 101 ~~~~----~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~ 172 (202)
..++ .+... .....+.+.....++++|||++.++...|..|+.+++++.+... ....++.+|++|+...+.
T Consensus 446 ~lfg~~~~~~~g~-~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~ 524 (686)
T PRK15429 446 DLFGHERGAFTGA-SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 524 (686)
T ss_pred hhcCccccccccc-ccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHH
Confidence 0000 00000 00011223344568999999999999999999999998764321 123567889999876543
No 168
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.6e-11 Score=102.50 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=94.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-----hccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-----FNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-----~~~~~~ 96 (202)
++|+||+.|++.+.-+.... ++++|+||||||||.+|..+...|-+ .. ..+.+++ ....++
T Consensus 179 ~DV~GQ~~AKrAleiAAAGg----------HnLl~~GpPGtGKTmla~Rl~~lLPp---ls-~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGG----------HNLLLVGPPGTGKTMLASRLPGLLPP---LS-IPEALEVSAIHSLAGDLH 244 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcC----------CcEEEecCCCCchHHhhhhhcccCCC---CC-hHHHHHHHHHhhhccccc
Confidence 36999999998886555421 26999999999999999998887644 11 1111111 111111
Q ss_pred C----------CCCchhHHHHHHhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-----c-c
Q psy1695 97 F----------PNENHVSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----I-S 156 (202)
Q Consensus 97 ~----------~~~~~~~~~~~~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-----~-~ 156 (202)
. ..+.... ....+.+ .-.+.+..+..+|+|+||.-.....+++.|.+-||++.++-. + .
T Consensus 245 ~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~y 323 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTY 323 (490)
T ss_pred ccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEE
Confidence 1 0010000 0000000 001112223358999999999999999999999999976532 1 2
Q ss_pred CCceEEEEeeCc---------------ChHHHHHHHHHHHHhhhHHHHhccch
Q psy1695 157 FQNTIFLFLSNS---------------GGTEIMNTFLELRKSECIEFIFQCQP 194 (202)
Q Consensus 157 ~~~~~~Iltsn~---------------~~~~i~~~~~~~~~~~~~r~~~~~~~ 194 (202)
..+-.+|+++|. +...+..+.-...-..++|+++.+..
T Consensus 324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev 376 (490)
T COG0606 324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEV 376 (490)
T ss_pred eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecc
Confidence 233445666675 34455556666667777788776653
No 169
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.16 E-value=3.2e-11 Score=94.58 Aligned_cols=97 Identities=8% Similarity=0.122 Sum_probs=59.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE 130 (202)
+.+++|+||+|||||++|+++++.+.. .+ ..++.+.+..+. .. ...+.+.+. ..++++|||
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~---~~--~~~~~i~~~~~~-----------~~-~~~~~~~~~--~~~lLvIDd 98 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE---RG--KSAIYLPLAELA-----------QA-DPEVLEGLE--QADLVCLDD 98 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEeHHHHH-----------Hh-HHHHHhhcc--cCCEEEEeC
Confidence 347899999999999999999998654 21 122222222110 00 011112222 236999999
Q ss_pred CCCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 131 VDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 131 id~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
++.++... ++.|..+++... + .+..+|+||+.....
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~-----~-~~~~iIits~~~~~~ 136 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVR-----E-AGGRLLIAGRAAPAQ 136 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHH-----H-cCCeEEEECCCChHH
Confidence 99998744 788888876532 0 234678888876543
No 170
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.15 E-value=4.3e-11 Score=98.10 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=73.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------cccCCC-----Cch-hHHHHHHhHHHHHHhhhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RIHFPN-----ENH-VSLYRLQLTNWIISNVTA 120 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~-~~~~~~~l~~~~~~~l~~ 120 (202)
+++|.||||||||++++.+|+.+.. +++++.+. ++.+.. .+. ...|. .+.+..+..
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~--------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~---~GpL~~A~~- 133 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW--------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFR---DGILPWALQ- 133 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC--------CeEEEEecCCCChhhcCCCceeeccCCcceeEEe---cCcchhHHh-
Confidence 5899999999999999999999744 23333221 111111 000 00011 111211211
Q ss_pred CCceEEEEecCCCCChhHHHHHHHhccc-Ccccc---c--c-cCCceEEEEeeCcChH----HHHHHHHHHHHhhhHHHH
Q psy1695 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDH-HAVYN---Q--I-SFQNTIFLFLSNSGGT----EIMNTFLELRKSECIEFI 189 (202)
Q Consensus 121 ~~~~viiiDEid~~~~~~~~~L~~~le~-~~~~~---~--~-~~~~~~~Iltsn~~~~----~i~~~~~~~~~~~~~r~~ 189 (202)
...++++||++++++++++.|..+||. +.++. + . ....-.+|.|+|.... ..-....++..+..+||.
T Consensus 134 -~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 134 -HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred -CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 235799999999999999999999995 34431 1 2 3345678999997431 111222334566666665
Q ss_pred hc
Q psy1695 190 FQ 191 (202)
Q Consensus 190 ~~ 191 (202)
+.
T Consensus 213 i~ 214 (327)
T TIGR01650 213 IV 214 (327)
T ss_pred eE
Confidence 43
No 171
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.14 E-value=1.4e-10 Score=100.74 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=93.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-Cc-cchhhh---h-----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GT-SRFVHK---F----- 91 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~~-~~~~~~---~----- 91 (202)
.+++||..+++.+..++. .. .+++|.||||+|||++++.++..+.+..... .. ...... .
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~g------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~ 261 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----GG------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQ 261 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----CC------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccc
Confidence 458999988766544432 22 2689999999999999999998754410000 00 000000 0
Q ss_pred cccccCCCCchhHHHHHHh-HH---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c--c-cCCceE
Q psy1695 92 NSRIHFPNENHVSLYRLQL-TN---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q--I-SFQNTI 161 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l-~~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~--~-~~~~~~ 161 (202)
...-.+..+.... ....+ .+ .-.+.+..+..++++|||++.+++.+++.|++.||++.+.- + . --.+..
T Consensus 262 ~~~~Pf~~p~~s~-s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~fr 340 (499)
T TIGR00368 262 IKQRPFRSPHHSA-SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQ 340 (499)
T ss_pred cccCCcccccccc-chhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeE
Confidence 0000000000000 00000 00 01123445566899999999999999999999999987431 1 1 224678
Q ss_pred EEEeeCcC---------------hHHHHHHHHHHHHhhhHHHHhccc
Q psy1695 162 FLFLSNSG---------------GTEIMNTFLELRKSECIEFIFQCQ 193 (202)
Q Consensus 162 ~Iltsn~~---------------~~~i~~~~~~~~~~~~~r~~~~~~ 193 (202)
+|.++|.. +..+.++.........+||++.+.
T Consensus 341 lIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~ 387 (499)
T TIGR00368 341 LVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVE 387 (499)
T ss_pred EEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEE
Confidence 89999963 234555566666677778877653
No 172
>KOG0728|consensus
Probab=99.14 E-value=2.1e-10 Score=90.00 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
+=|.+..++.+.+.+.--..+|. +..+|.+++|+||||||||.+|+++|.+..+ .|+++..+.+..
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--------~firvsgselvq- 219 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------TFIRVSGSELVQ- 219 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce--------EEEEechHHHHH-
Confidence 44556666777666654222211 1346779999999999999999999998544 355554443321
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEEee
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLS 166 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilts 166 (202)
.+++ ....+...+.-+.+....+++|.||||... .++|..++.++.. .++. ...|.-+|++|
T Consensus 220 --k~ig-egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq---ldgfeatknikvimat 293 (404)
T KOG0728|consen 220 --KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ---LDGFEATKNIKVIMAT 293 (404)
T ss_pred --HHhh-hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh---ccccccccceEEEEec
Confidence 1222 111223344444455556899999998763 3577777776654 1232 34677788999
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|.-.
T Consensus 294 nrid 297 (404)
T KOG0728|consen 294 NRID 297 (404)
T ss_pred cccc
Confidence 8753
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=2.2e-10 Score=105.36 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=79.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcC-ccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKG-TSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~ 100 (202)
.++|++..++.+.+.+.+... .+++|+||||||||++|+.+|+.+... .+... ...++..+++.+.. ..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~--------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a-g~ 250 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTK--------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA-GT 250 (821)
T ss_pred CCCCcHHHHHHHHHHHccccc--------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-cC
Confidence 589999999998888775421 156899999999999999999997531 00000 12333344332221 11
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.+.+.+.+...+ +.+...+..|+||||++.+.. ++.+.|.+.+.+| ...+|.+||..
T Consensus 251 ~~~ge~e~rl~~i~-~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg---------~l~~IgaTt~~ 317 (821)
T CHL00095 251 KYRGEFEERLKRIF-DEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG---------ELQCIGATTLD 317 (821)
T ss_pred CCccHHHHHHHHHH-HHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC---------CcEEEEeCCHH
Confidence 23344444444433 333444557999999975532 4678888888875 45666766643
No 174
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=7.2e-10 Score=93.98 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=79.4
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc-------
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------- 92 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------- 92 (202)
..+.++|++..++.+...+.....+. .|..++++||||||||++++.+++.+.. .+....++.+++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~----~~~~~lI~G~~GtGKT~l~~~v~~~l~~---~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGS----RPLNVLIYGPPGTGKTTTVKKVFEELEE---IAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---hcCCcEEEEEECCcCCCHH
Confidence 44679999999999999998866432 4446899999999999999999998754 210011111111
Q ss_pred -------ccccC-CCC-chhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC----hhHHHHHHHhcccCcccccccCC
Q psy1695 93 -------SRIHF-PNE-NHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQ 158 (202)
Q Consensus 93 -------~~~~~-~~~-~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~----~~~~~~L~~~le~~~~~~~~~~~ 158 (202)
..+.. ..+ .... +. .+...+.+.+... ...||+|||+|.+. .+.+..|+..++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~------~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLS-FD-ELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP------GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCC-HH-HHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC------CC
Confidence 11111 000 0000 11 1223333444433 34789999999886 344555555444321 13
Q ss_pred ceEEEEeeCcC
Q psy1695 159 NTIFLFLSNSG 169 (202)
Q Consensus 159 ~~~~Iltsn~~ 169 (202)
+..+|+++|..
T Consensus 173 ~v~vI~i~~~~ 183 (394)
T PRK00411 173 RIGVIGISSDL 183 (394)
T ss_pred eEEEEEEECCc
Confidence 67788888864
No 175
>KOG2035|consensus
Probab=99.13 E-value=2.3e-10 Score=90.67 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=83.0
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-------------ccchhhh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-------------TSRFVHK 90 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-------------~~~~~~~ 90 (202)
+++.++....+..... . .+-| +++|+||+|+||.+.+.++-+.+++ .|. ...-+++
T Consensus 15 l~~~~e~~~~Lksl~~----~---~d~P-Hll~yGPSGaGKKTrimclL~elYG---~gveklki~~~t~~tpS~kklEi 83 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS----T---GDFP-HLLVYGPSGAGKKTRIMCLLRELYG---VGVEKLKIETRTFTTPSKKKLEI 83 (351)
T ss_pred cccHHHHHHHHHHhcc----c---CCCC-eEEEECCCCCCchhhHHHHHHHHhC---CCchheeeeeEEEecCCCceEEE
Confidence 6667665555533222 1 1245 7999999999999999999999998 332 0000111
Q ss_pred h--cccccC-CCCchhHHHHHHhHHHHHHhh---------hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695 91 F--NSRIHF-PNENHVSLYRLQLTNWIISNV---------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ 158 (202)
Q Consensus 91 ~--~~~~~~-~~~~~~~~~~~~l~~~~~~~l---------~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~ 158 (202)
. .+.++- -.|+..|-++..+...+.+.+ .+.++.|++|.|+|.+..++|..|.+.||... +
T Consensus 84 stvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-------~ 156 (351)
T KOG2035|consen 84 STVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-------S 156 (351)
T ss_pred EEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-------c
Confidence 1 111111 112223322222222222212 22356999999999999999999999999987 8
Q ss_pred ceEEEEeeCcChHHH
Q psy1695 159 NTIFLFLSNSGGTEI 173 (202)
Q Consensus 159 ~~~~Iltsn~~~~~i 173 (202)
++.+|+.+|..+..|
T Consensus 157 ~~RlIl~cns~SriI 171 (351)
T KOG2035|consen 157 NCRLILVCNSTSRII 171 (351)
T ss_pred CceEEEEecCcccch
Confidence 889999999876654
No 176
>KOG0735|consensus
Probab=99.13 E-value=1.6e-10 Score=101.50 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=90.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC----C-CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY----H-NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~----~-~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++-|-.++++.+.+.+..-..++. + -+.+.+++|+||||||||++|.++|....- .|+.+-.+++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~--------~fisvKGPEl-- 737 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL--------RFISVKGPEL-- 737 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe--------eEEEecCHHH--
Confidence 466777777777776654222211 0 122337999999999999999999988211 2332222211
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...|+|..+ +-.+.+.+..+.+...|+||||+|...| .+.|.|+.-||... --..++|+.+
T Consensus 738 -L~KyIGaSE-q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl~GV~i~aa 809 (952)
T KOG0735|consen 738 -LSKYIGASE-QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------GLDGVYILAA 809 (952)
T ss_pred -HHHHhcccH-HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------ccceEEEEEe
Confidence 112333222 2233444555556668999999988865 37888888887533 2456778888
Q ss_pred CcChHHHHHHHHHHHHhhhHHHH
Q psy1695 167 NSGGTEIMNTFLELRKSECIEFI 189 (202)
Q Consensus 167 n~~~~~i~~~~~~~~~~~~~r~~ 189 (202)
+..++.|..+ +.|.||.+-.
T Consensus 810 TsRpdliDpA---LLRpGRlD~~ 829 (952)
T KOG0735|consen 810 TSRPDLIDPA---LLRPGRLDKL 829 (952)
T ss_pred cCCccccCHh---hcCCCcccee
Confidence 8888877666 4566665443
No 177
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=6.2e-10 Score=93.40 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=44.4
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+.++|++..++.+...+.....+. .|..++++||||||||++++.+++.+..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~----~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGS----RPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999998866432 4446899999999999999999988753
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.12 E-value=2.3e-10 Score=105.59 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=75.0
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~ 100 (202)
.++||+..++.+...+.+...+ ..+|+||||||||++++.+++.+.... +.. ....++..++..+.. ..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~--------n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a-~~ 244 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA-GA 244 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCC--------ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-cc
Confidence 4999999888887777653211 467999999999999999999864410 000 011122222222110 11
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.+.+...+...+...-......|+||||++.+.. ++.+.|.+.+++| ...+|.+||..
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------~i~~IgaTt~~ 312 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------ELHCIGATTLD 312 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------ceEEEEeCcHH
Confidence 222223333333333222223457999999997752 3667787777664 46677777654
No 179
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.3e-09 Score=88.96 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-----hCCce
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----ACDRA 124 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-----~~~~~ 124 (202)
.+++++|+|+.|.||+.+|..+++.+.|..+.+........+...+. .....++ .+++.. +.+.+. .+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g~~i~--vd~Ir~-l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFDKDLS--KSEFLS-AINKLYFSSFVQSQKK 92 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCCCcCC--HHHHHH-HHHHhccCCcccCCce
Confidence 45579999999999999999999999773211100000000111111 0011122 122222 222221 24679
Q ss_pred EEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 125 IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 125 viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
|+|||++|+|+..++|.|++.||+++ .+++||++|+..
T Consensus 93 vvII~~~e~m~~~a~NaLLK~LEEPp-------~~t~~il~~~~~ 130 (299)
T PRK07132 93 ILIIKNIEKTSNSLLNALLKTIEEPP-------KDTYFLLTTKNI 130 (299)
T ss_pred EEEEecccccCHHHHHHHHHHhhCCC-------CCeEEEEEeCCh
Confidence 99999999999999999999999998 899999988733
No 180
>KOG0742|consensus
Probab=99.11 E-value=7.3e-10 Score=92.21 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=77.4
Q ss_pred Cce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH--HHHHhHHHHHHhhhhCC-ceE
Q psy1695 50 KAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL--YRLQLTNWIISNVTACD-RAI 125 (202)
Q Consensus 50 ~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~-~~v 125 (202)
.|. .++||||||||||.+|+.||+. .|++- +.+.+.+....+. ... ...+.+.-..+. .=+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~------SGlDY-------A~mTGGDVAPlG~qaVTk--iH~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARH------SGLDY-------AIMTGGDVAPLGAQAVTK--IHKLFDWAKKSRRGLL 446 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhh------cCCce-------ehhcCCCccccchHHHHH--HHHHHHHHhhcccceE
Confidence 444 5999999999999999999998 44321 1111111111110 111 334444433333 357
Q ss_pred EEEecCC---------CCChhHHHHHHHhccc-CcccccccCCceEEEEeeCcChH---HHHHHHHHHHHhhhHHHHhcc
Q psy1695 126 FIFDEVD---------KFPKGLLDVIIPFIDH-HAVYNQISFQNTIFLFLSNSGGT---EIMNTFLELRKSECIEFIFQC 192 (202)
Q Consensus 126 iiiDEid---------~~~~~~~~~L~~~le~-~~~~~~~~~~~~~~Iltsn~~~~---~i~~~~~~~~~~~~~r~~~~~ 192 (202)
+||||+| +|+.+....|..+|-. |. ..+..+.++.||...+ .+++.+-+......|-...+.
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-----qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERf 521 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERF 521 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-----cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHH
Confidence 7899994 4555544445444432 21 2256677888887643 466666666655566666666
Q ss_pred chhHHHhhcC
Q psy1695 193 QPLKVYLKKL 202 (202)
Q Consensus 193 ~~~~~~~~~~ 202 (202)
+-|..|+.||
T Consensus 522 kll~lYlnky 531 (630)
T KOG0742|consen 522 KLLNLYLNKY 531 (630)
T ss_pred HHHHHHHHHH
Confidence 7777787764
No 181
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.11 E-value=2.8e-10 Score=101.46 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=71.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 99 (202)
++++||+.++..+.+.+. .+ .|.+++|+||+|||||++|+++++......... ...+++.++...+....
T Consensus 154 ~~iiGqs~~~~~l~~~ia----~~----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~ 225 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA----SP----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP 225 (615)
T ss_pred HhceeCcHHHHHHHHHHh----cC----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence 358999999988755542 11 344699999999999999999988754311010 02334444433221000
Q ss_pred C----chhHHHHH----HhHHHH---------HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCc
Q psy1695 100 E----NHVSLYRL----QLTNWI---------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 150 (202)
Q Consensus 100 ~----~~~~~~~~----~l~~~~---------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~ 150 (202)
. ...+...+ .....+ ...+.....+++||||++.+++..++.|+++|+++.
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR 293 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence 0 00000000 000000 111223345799999999999999999999999875
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=1.6e-10 Score=103.52 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=78.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh-----------cc--ccCcCc----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF-----------KR--YKDKGT---- 84 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~-----------~~--~~~~~~---- 84 (202)
..|+||+.++..+..++... ...+++|.|++|||||++|+++++.+- |. .+.+.+
T Consensus 4 ~~ivGq~~~~~al~~~av~~--------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~ 75 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP--------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECR 75 (633)
T ss_pred chhcChHHHHHHHHHHhhCC--------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhh
Confidence 36999999887665443321 112699999999999999999999972 10 000000
Q ss_pred ----------cchhhhhcccccCCCCchhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHHHHHhc
Q psy1695 85 ----------SRFVHKFNSRIHFPNENHVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI 146 (202)
Q Consensus 85 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~l 146 (202)
.+|+.+.... .....++.. .+...+ .+.+..+..++++|||++++++.+++.|+++|
T Consensus 76 ~~~~~~~~~~~pfv~~p~~~---t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 76 RKYRPSEQRPVPFVNLPLGA---TEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred hcccccccCCCCeeeCCCCC---cHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 1111111000 000001100 001111 12233344589999999999999999999999
Q ss_pred ccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695 147 DHHAVY---NQI---SFQNTIFLFLSNSGG 170 (202)
Q Consensus 147 e~~~~~---~~~---~~~~~~~Iltsn~~~ 170 (202)
+++.+. .+. --.+..+|.|+|...
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~e 180 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEE 180 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCC
Confidence 988532 121 124567788888643
No 183
>KOG0651|consensus
Probab=99.09 E-value=5.3e-10 Score=89.93 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
+-|--..+..+.+.+.-.+.++. ..+.|+++++|||||+|||.+|+++|..+-. +++.+..+.+...
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~--------nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV--------NFLKVVSSALVDK 205 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC--------ceEEeeHhhhhhh
Confidence 44444444454444433332221 2357889999999999999999999999644 3444433333222
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEee
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLS 166 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilts 166 (202)
+++... .+........+..-..++++||+|.. +..++..|+.+++. .++. ...++-+|+|+
T Consensus 206 ---yiGEsa-RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq---mdgfd~l~rVk~Imat 278 (388)
T KOG0651|consen 206 ---YIGESA-RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ---MDGFDTLHRVKTIMAT 278 (388)
T ss_pred ---hcccHH-HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh---hccchhcccccEEEec
Confidence 222111 11222222223333389999999654 23567778887774 2332 45778899999
Q ss_pred CcChH
Q psy1695 167 NSGGT 171 (202)
Q Consensus 167 n~~~~ 171 (202)
|..+.
T Consensus 279 Nrpdt 283 (388)
T KOG0651|consen 279 NRPDT 283 (388)
T ss_pred CCccc
Confidence 97653
No 184
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.09 E-value=2e-10 Score=109.82 Aligned_cols=127 Identities=11% Similarity=0.175 Sum_probs=70.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC------------------------------
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN------------------------------ 99 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 99 (202)
.|.++||+||||||||++|+++|..... +++.+..+.+....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V--------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV--------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC--------ceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 3458999999999999999999998533 33333332221100
Q ss_pred --------CchhHHHHHH-hHHHHHHhhhhCCceEEEEecCCCCChh-----HHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 100 --------ENHVSLYRLQ-LTNWIISNVTACDRAIFIFDEVDKFPKG-----LLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 100 --------~~~~~~~~~~-l~~~~~~~l~~~~~~viiiDEid~~~~~-----~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.+..+.-... -...+.+..+.....||+|||||.+... ..+.|+..|+... ...+.++++||.+
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--ERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--ccCCCCCEEEEEe
Confidence 0000000000 0122333344445689999999998763 3566776676421 0113357788888
Q ss_pred eCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 166 SNSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 166 sn~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
||... .+-.+ +++.||.+..+
T Consensus 1779 TNRPD-~LDPA---LLRPGRFDR~I 1799 (2281)
T CHL00206 1779 THIPQ-KVDPA---LIAPNKLNTCI 1799 (2281)
T ss_pred CCCcc-cCCHh---HcCCCCCCeEE
Confidence 88754 33333 35555554333
No 185
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=93.91 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=69.7
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
++..++|..... ...++......+. .+.+++|+||+|+|||+|+.++++.+.. ......++.+....+..
T Consensus 104 FdnFv~g~~n~~--a~~~~~~~~~~~~---~~n~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~~~f~~-- 173 (440)
T PRK14088 104 FENFVVGPGNSF--AYHAALEVAKNPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKFLN-- 173 (440)
T ss_pred ccccccCCchHH--HHHHHHHHHhCcC---CCCeEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHHH--
Confidence 445577755432 2233333333322 2335899999999999999999998754 21111111111111000
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
.........-...+.+... ...++++|||++.+.. ..+..|+.++..-. + .+..+|+||+..++.+...
T Consensus 174 -~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-----~-~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 174 -DLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKLSEF 244 (440)
T ss_pred -HHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-----H-cCCeEEEECCCCHHHHHHH
Confidence 0000000000011111121 1357999999997742 34556666554321 0 2346788888877766543
No 186
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=8.6e-10 Score=95.60 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=86.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|...++..+...+...... ...++++|++||||+++|+++++.... . ..+|+.++++.+... .
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~i~i~c~~~~~~---~ 204 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS------SISVLINGESGTGKELVAHALHRHSPR---A--KAPFIALNMAAIPKD---L 204 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc------CCeEEEEeCCCCcHHHHHHHHHhcCCC---C--CCCeEeeeCCCCCHH---H
Confidence 4777777777777777655432 236899999999999999999887433 1 345666666543110 0
Q ss_pred hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeC
Q psy1695 103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN 167 (202)
Q Consensus 103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn 167 (202)
....+.+ .-.+.+.....+.++|||++.++...|..|+++++++.+... ....++.+|+||+
T Consensus 205 ---~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 205 ---IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 (469)
T ss_pred ---HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCC
Confidence 0000000 000112333457899999999999999999999998865431 1234678999998
Q ss_pred cChH
Q psy1695 168 SGGT 171 (202)
Q Consensus 168 ~~~~ 171 (202)
....
T Consensus 282 ~~l~ 285 (469)
T PRK10923 282 QNLE 285 (469)
T ss_pred CCHH
Confidence 7654
No 187
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.07 E-value=1.2e-09 Score=85.98 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=56.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
+++|+||+|||||++|+++++.+.. .+. .++.+..... .. .. .. ....++++|||++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~---~~~--~~~~i~~~~~-----------~~----~~-~~--~~~~~~liiDdi~ 100 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASY---GGR--NARYLDAASP-----------LL----AF-DF--DPEAELYAVDDVE 100 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CCC--cEEEEehHHh-----------HH----HH-hh--cccCCEEEEeChh
Confidence 6899999999999999999998654 221 1111111110 00 00 01 1124789999999
Q ss_pred CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.++...+..|..+++... .....++|++++..+
T Consensus 101 ~l~~~~~~~L~~~~~~~~-----~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVR-----AHGQGALLVAGPAAP 133 (227)
T ss_pred hcCchHHHHHHHHHHHHH-----HcCCcEEEEeCCCCH
Confidence 999988889988886532 112334666666543
No 188
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.07 E-value=6.4e-10 Score=92.21 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=76.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-------ccCcCccch-h----h
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-------YKDKGTSRF-V----H 89 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~-~----~ 89 (202)
..++||+.++..+.-++-.- ..-++++.|++|+|||+++++++..+... .+.....++ + +
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 75 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVR 75 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHh
Confidence 35899999988875444421 11168999999999999999999886220 000000000 0 0
Q ss_pred h--h-------------cccccC--CCCchhHH--HHHHhHH-H---HHHhhhhCCceEEEEecCCCCChhHHHHHHHhc
Q psy1695 90 K--F-------------NSRIHF--PNENHVSL--YRLQLTN-W---IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI 146 (202)
Q Consensus 90 ~--~-------------~~~~~~--~~~~~~~~--~~~~l~~-~---~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~l 146 (202)
. . ..++.. ......+. +...+.. . -.+.+..+..+++++||++++++..|+.|+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l 155 (337)
T TIGR02030 76 IRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA 155 (337)
T ss_pred hhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence 0 0 000100 00111111 1110000 0 011233344589999999999999999999999
Q ss_pred ccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695 147 DHHAVY---NQI---SFQNTIFLFLSNSGG 170 (202)
Q Consensus 147 e~~~~~---~~~---~~~~~~~Iltsn~~~ 170 (202)
+++..+ .+. --.+.++|.|.|...
T Consensus 156 ~~g~~~v~r~G~~~~~~~r~iviat~np~e 185 (337)
T TIGR02030 156 ASGWNVVEREGISIRHPARFVLVGSGNPEE 185 (337)
T ss_pred HhCCeEEEECCEEEEcCCCEEEEecccccc
Confidence 987521 221 113455666666553
No 189
>KOG0741|consensus
Probab=99.06 E-value=2.7e-10 Score=97.27 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=69.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCc-cchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFI 127 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~vii 127 (202)
+++|+||||||||.+||.|.+.|..++++-.. .++ +..+.+.....+. .+.....+..+ .+.-+|||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI----L~KYVGeSE~NvR----~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI----LNKYVGESEENVR----KLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH----HHHhhcccHHHHH----HHHHhHHHHHHhhCccCCceEEE
Confidence 69999999999999999999998774333111 111 1122222111111 01111111111 22338999
Q ss_pred EecCCCC-------------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 128 FDEVDKF-------------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 128 iDEid~~-------------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
|||+|.. +..+.|.|+.=||.-. ..+|..+|-.||.. +.|.++ +.|.||.+..+
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-----qLNNILVIGMTNR~-DlIDEA---LLRPGRlEVqm 396 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-----QLNNILVIGMTNRK-DLIDEA---LLRPGRLEVQM 396 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-----hhhcEEEEeccCch-hhHHHH---hcCCCceEEEE
Confidence 9999644 2356777776666421 45788889888874 445555 45667655443
No 190
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.06 E-value=7e-10 Score=100.63 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=76.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~ 100 (202)
.++|.+..++.+.+.+.+.. +..++|+||||||||++|+.+++.+.... +.. ....++..+...+.. ..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~--------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla-G~ 257 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GT 257 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc-cc
Confidence 59999999999988777632 12468999999999999999998764310 000 011111111111111 01
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.+.+.+.+. .+...+......|+||||++.+ ..++.+.|.+++.+ .+..+|.+||..
T Consensus 258 ~~~Ge~e~rl~-~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~---------g~i~vIgATt~~ 325 (758)
T PRK11034 258 KYRGDFEKRFK-ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---------GKIRVIGSTTYQ 325 (758)
T ss_pred chhhhHHHHHH-HHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC---------CCeEEEecCChH
Confidence 12232333222 2333444555679999999866 12456678888877 456777877764
No 191
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.06 E-value=5.3e-10 Score=100.27 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=86.1
Q ss_pred hCCChHHHHHHHHHHHHHhHh----ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 23 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~----~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
++.|.+.+++.+.+.+..... .......|.+++|+||||||||+++++++..+.. +++.+..+.+...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~--------~f~~is~~~~~~~ 224 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--------PFFTISGSDFVEM 224 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------CEEEEehHHhHHh
Confidence 588999888888776654211 0000124557999999999999999999998533 2333222221110
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
..+.. ... ...+..........||||||+|.+.. ...+.|+..|+.-. +....++|.
T Consensus 225 ~~g~~---~~~-~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----~~~~vivIa 295 (644)
T PRK10733 225 FVGVG---ASR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIA 295 (644)
T ss_pred hhccc---HHH-HHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----CCCCeeEEE
Confidence 00000 011 12222223334457999999988732 24555655555421 224678888
Q ss_pred eeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695 165 LSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK 201 (202)
Q Consensus 165 tsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~ 201 (202)
+||... .+..++ .+.||. +...+.+.|+.|+++
T Consensus 296 aTN~p~-~lD~Al---~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 296 ATNRPD-VLDPAL---LRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ecCChh-hcCHHH---hCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 888653 333332 333333 333344456666654
No 192
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9.9e-10 Score=92.11 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=87.8
Q ss_pred HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
.+.+.+.+.+.-++++...+...+.+. .|..++++||||||||.+++.+.+.+... .....++.+++..+..+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~----~p~n~~iyG~~GTGKT~~~~~v~~~l~~~---~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGE----RPSNIIIYGPTGTGKTATVKFVMEELEES---SANVEVVYINCLELRTP 86 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCC----CCccEEEECCCCCCHhHHHHHHHHHHHhh---hccCceEEEeeeeCCCH
Confidence 344568999999999999988887654 56679999999999999999999998762 11111333333222111
Q ss_pred -------------CCchhHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 99 -------------NENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 99 -------------~~~~~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
.+.. +....+....+.+.+.. ...-||++||+|.+.....+.|..++.-+... ..++.+|+
T Consensus 87 ~~i~~~i~~~~~~~p~~-g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~----~~~v~vi~ 161 (366)
T COG1474 87 YQVLSKILNKLGKVPLT-GDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN----KVKVSIIA 161 (366)
T ss_pred HHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc----ceeEEEEE
Confidence 1110 00111223444444444 34478899999999876556666665543211 35667788
Q ss_pred eeCcCh
Q psy1695 165 LSNSGG 170 (202)
Q Consensus 165 tsn~~~ 170 (202)
++|...
T Consensus 162 i~n~~~ 167 (366)
T COG1474 162 VSNDDK 167 (366)
T ss_pred EeccHH
Confidence 887653
No 193
>PRK09183 transposase/IS protein; Provisional
Probab=99.05 E-value=7.4e-10 Score=88.93 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHH-hHHHHHHhhh--hCCceEEEEe
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVT--ACDRAIFIFD 129 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~l~--~~~~~viiiD 129 (202)
.++|+||+|||||++|.+++..+.. .+....|+.. ..+ ...+... ....+...+. ....+++|||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~~--~~l-------~~~l~~a~~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTTA--ADL-------LLQLSTAQRQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeH--HHH-------HHHHHHHHHCCcHHHHHHHHhcCCCEEEEc
Confidence 6889999999999999999887544 3321212111 100 0000000 0000111111 1234799999
Q ss_pred cCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 130 EVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 130 Eid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
|++..+ ....+.|+++++... .+..+|+|||...+.+.+.+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-------~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-------EKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-------hcCcEEEecCCCHHHHHHHh
Confidence 998754 456667888887632 33458999999998887765
No 194
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.05 E-value=3.7e-09 Score=87.41 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=38.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.++||.+|.+.+.-.+.-....+- .+.++||.||||||||.+|.++|+.|-.
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~---aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKI---AGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT-----TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred ccccChHHHHHHHHHHHHHHhcccc---cCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 5799999998887666655433321 2347999999999999999999999753
No 195
>PRK05642 DNA replication initiation factor; Validated
Probab=99.04 E-value=4.1e-10 Score=89.14 Aligned_cols=98 Identities=10% Similarity=0.168 Sum_probs=59.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+||+|+|||||++++++++.. .+....|+. ...+ .. . ...+.+.+.. .++++|||++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~--~~~~-------~~-~----~~~~~~~~~~--~d~LiiDDi~ 107 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLP--LAEL-------LD-R----GPELLDNLEQ--YELVCLDDLD 107 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEee--HHHH-------Hh-h----hHHHHHhhhh--CCEEEEechh
Confidence 5799999999999999999988654 221111211 1111 00 0 1112222332 3689999998
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.... ..+..|+.+++... .++..+|+||+..+..+..
T Consensus 108 ~~~~~~~~~~~Lf~l~n~~~------~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 108 VIAGKADWEEALFHLFNRLR------DSGRRLLLAASKSPRELPI 146 (234)
T ss_pred hhcCChHHHHHHHHHHHHHH------hcCCEEEEeCCCCHHHcCc
Confidence 7753 44566777776422 1356788889888765543
No 196
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.03 E-value=1.2e-09 Score=95.71 Aligned_cols=145 Identities=15% Similarity=0.133 Sum_probs=87.9
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc----cCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 88 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~----~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 88 (202)
++.|.+.+...++|++.++..+.-++...... ....+...++||+|+||||||.+|+++++.... . .+.
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r---~----~~~ 266 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR---A----VYT 266 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc---c----eEc
Confidence 35566777788999999888777666543211 000112337999999999999999999997533 1 111
Q ss_pred hh---hcccccCCC-Cc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc---ccc---cC
Q psy1695 89 HK---FNSRIHFPN-EN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SF 157 (202)
Q Consensus 89 ~~---~~~~~~~~~-~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~---~~~---~~ 157 (202)
.. ....+.... .. ..+.+. .-.+.+..+..++++|||++++++..+..|+++|+++.++ .+. -.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~g~~~-----~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 267 TGKGSSAVGLTAAVTRDPETREFT-----LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCCCCCcCCccccceEccCcceEE-----ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 10 011110000 00 000000 0012233445689999999999999999999999987643 121 22
Q ss_pred CceEEEEeeCcC
Q psy1695 158 QNTIFLFLSNSG 169 (202)
Q Consensus 158 ~~~~~Iltsn~~ 169 (202)
.++.+|.++|..
T Consensus 342 ~~~~viAa~NP~ 353 (509)
T smart00350 342 ARCSVLAAANPI 353 (509)
T ss_pred CCcEEEEEeCCC
Confidence 466788888864
No 197
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.03 E-value=4.6e-10 Score=95.71 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
++..++|..... ...++......+. ..+..++|+||+|+|||++++++++++.. ......++.+....+..
T Consensus 109 fd~fi~g~~n~~--a~~~~~~~~~~~~--~~~n~l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~~~~~~~-- 179 (405)
T TIGR00362 109 FDNFVVGKSNRL--AHAAALAVAENPG--KAYNPLFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVSSEKFTN-- 179 (405)
T ss_pred ccccccCCcHHH--HHHHHHHHHhCcC--ccCCeEEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEEHHHHHH--
Confidence 444577765432 2233344333322 12335899999999999999999999765 21011111111111100
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.........-...+.+.+.. .++++|||++.+.. ..+..|+.+++.-. ..+..+|+|||..++.+..
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~------~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 180 -DFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNALH------ENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred -HHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHH------HCCCCEEEecCCCHHHHhh
Confidence 00000000001112222222 47999999998764 35666776665421 0345578899988776654
No 198
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.03 E-value=2.3e-09 Score=92.39 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 18 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 18 ~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
..++..++|.... ....++......+. ....+++|+|++|+|||+|++++++++.... .+ ..++.+....+
T Consensus 112 ~tFdnFv~g~~n~--~A~~aa~~~a~~~~--~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~--~~v~yv~~~~f-- 182 (450)
T PRK14087 112 NTFENFVIGSSNE--QAFIAVQTVSKNPG--ISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SD--LKVSYMSGDEF-- 182 (450)
T ss_pred cchhcccCCCcHH--HHHHHHHHHHhCcC--cccCceEEECCCCCcHHHHHHHHHHHHHHhC-CC--CeEEEEEHHHH--
Confidence 3556678886542 22234444433322 1112479999999999999999999875410 11 11111111110
Q ss_pred CCCchhHHHHHHhH---HHHHHhhh-hCCceEEEEecCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 98 PNENHVSLYRLQLT---NWIISNVT-ACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 98 ~~~~~~~~~~~~l~---~~~~~~l~-~~~~~viiiDEid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
...+...+. +.+.+... -...++++|||++.+. ...++.|+.++..-. .++..+|+|||..++
T Consensus 183 -----~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~------~~~k~iIltsd~~P~ 251 (450)
T PRK14087 183 -----ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI------ENDKQLFFSSDKSPE 251 (450)
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH------HcCCcEEEECCCCHH
Confidence 010111011 11111111 1234799999999887 456777777776532 033467899999887
Q ss_pred HHH
Q psy1695 172 EIM 174 (202)
Q Consensus 172 ~i~ 174 (202)
.+.
T Consensus 252 ~l~ 254 (450)
T PRK14087 252 LLN 254 (450)
T ss_pred HHh
Confidence 664
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=99.02 E-value=1.1e-09 Score=99.78 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=71.6
Q ss_pred EEEEec--CCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh-----CCceE
Q psy1695 53 AISLHG--LPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-----CDRAI 125 (202)
Q Consensus 53 ~~ll~G--p~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-----~~~~v 125 (202)
+-+..| |++.|||++|+++|+.++. .+...+++.++.++. ..+. .+...+.+.... .++.|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g---~~~~~~~lElNASd~-----rgid----~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFG---ENWRHNFLELNASDE-----RGIN----VIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhc---ccccCeEEEEeCCCc-----ccHH----HHHHHHHHHHhcCCcCCCCCEE
Confidence 356778 9999999999999999876 333334555554431 1122 122222222211 23579
Q ss_pred EEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 126 FIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 126 iiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
+||||+|+|+.++|+.|+++||+++ .++.||++||.....
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~-------~~~~FILi~N~~~kI 673 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSKI 673 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCC-------CCeEEEEEeCChhhC
Confidence 9999999999999999999999977 899999999987544
No 200
>KOG0652|consensus
Probab=99.00 E-value=3.4e-09 Score=83.75 Aligned_cols=132 Identities=13% Similarity=0.183 Sum_probs=75.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++=|-+..++.+.+++---+.++. +.+.|.++++|||||||||.+|++.|..... .|+....+.+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--------TFLKLAgPQLVQ 243 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--------TFLKLAGPQLVQ 243 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--------hHHHhcchHHHh
Confidence 466778888888887743221111 1345668999999999999999999887422 343333222211
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL 165 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt 165 (202)
-+++ -...+.+............||||||+|... .++|..++.++.. .++. +...+-+|..
T Consensus 244 ---MfIG-dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ---LDGFss~~~vKviAA 316 (424)
T KOG0652|consen 244 ---MFIG-DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ---LDGFSSDDRVKVIAA 316 (424)
T ss_pred ---hhhc-chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh---hcCCCCccceEEEee
Confidence 1111 011112222222233445899999996552 3577777777654 2232 3356667777
Q ss_pred eCcC
Q psy1695 166 SNSG 169 (202)
Q Consensus 166 sn~~ 169 (202)
||.-
T Consensus 317 TNRv 320 (424)
T KOG0652|consen 317 TNRV 320 (424)
T ss_pred cccc
Confidence 7764
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=3e-09 Score=75.89 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=58.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC-------------CCCchhHHHHHHhHHHHHHhhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-------------PNENHVSLYRLQLTNWIISNVT 119 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~l~ 119 (202)
.++|+||||||||++++.++..+.. .. ..++.+....... ....... .. ..........
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 75 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP---PG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG-EL--RLRLALALAR 75 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC---CC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCH-HH--HHHHHHHHHH
Confidence 6899999999999999999999766 21 0122221111100 0000111 11 1223333344
Q ss_pred hCCceEEEEecCCCCChhHHHHHHHhcccC-cccccccCCceEEEEeeCc
Q psy1695 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH-AVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 120 ~~~~~viiiDEid~~~~~~~~~L~~~le~~-~~~~~~~~~~~~~Iltsn~ 168 (202)
..+..++++||++.+............... .........+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 444589999999999886655543321000 0000012267788899985
No 202
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.99 E-value=3e-09 Score=96.23 Aligned_cols=140 Identities=15% Similarity=0.211 Sum_probs=83.4
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCc-cchhhhhccccc--
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGT-SRFVHKFNSRIH-- 96 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~-~~~~~~~~~~~~-- 96 (202)
.+.+.|++.-++.+..++...+.+.. ...+++++|+||||||.+++.+.+.|..... .+.. ..++.+++..+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsg---pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSG---SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCC---CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 35799999999999999998876432 1224679999999999999999988753100 1100 112223221111
Q ss_pred ------------CCCC-chhHHHHHHhHHHHHHhhhh--CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceE
Q psy1695 97 ------------FPNE-NHVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTI 161 (202)
Q Consensus 97 ------------~~~~-~~~~~~~~~l~~~~~~~l~~--~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~ 161 (202)
...+ .....+ + ....+...+.. ....||||||+|.+....++.|+.+++... ......+
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~-e-vLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~----~s~SKLi 904 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSF-K-ILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT----KINSKLV 904 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHH-H-HHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh----ccCCeEE
Confidence 1111 111001 1 12222222211 123689999999998877788888877532 1225688
Q ss_pred EEEeeCcC
Q psy1695 162 FLFLSNSG 169 (202)
Q Consensus 162 ~Iltsn~~ 169 (202)
+|.+||..
T Consensus 905 LIGISNdl 912 (1164)
T PTZ00112 905 LIAISNTM 912 (1164)
T ss_pred EEEecCch
Confidence 89999854
No 203
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.99 E-value=9.7e-09 Score=80.75 Aligned_cols=123 Identities=13% Similarity=0.119 Sum_probs=81.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
+.++|-+..++.+.+...+++.+. .+.++|++|+.|||||++++++...... .|. .++.+....+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~---~GL--RlIev~k~~L------ 91 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL----PANNVLLWGARGTGKSSLVKALLNEYAD---QGL--RLIEVSKEDL------ 91 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhh---cCc--eEEEECHHHh------
Confidence 369999999999999999998763 2346999999999999999999998665 432 1222211111
Q ss_pred hhHHHHHHhHHHHHHhhhhCCc-eEEEEecCCCCC-hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVTACDR-AIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~~~~-~viiiDEid~~~-~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
. . ...+.+.+...|. -||++|+..--. ......|..+||.+- ...-.|+++..|||..
T Consensus 92 --~---~--l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl---e~~P~NvliyATSNRR 151 (249)
T PF05673_consen 92 --G---D--LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL---EARPDNVLIYATSNRR 151 (249)
T ss_pred --c---c--HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc---ccCCCcEEEEEecchh
Confidence 1 0 2234444554544 788899974322 234566777777542 0122799999999963
No 204
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.98 E-value=1.1e-09 Score=94.48 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=59.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+||+|+|||++++++++.+.. ......++.+....+.. .............+.+.+. ..++++|||++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~ 221 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTSEKFTN---DFVNALRNNTMEEFKEKYR--SVDVLLIDDIQ 221 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHHH---HHHHHHHcCcHHHHHHHHh--cCCEEEEehhh
Confidence 5899999999999999999999765 21011111111111100 0000000000111222222 25799999999
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.+.. ..+..|+.+++... + ++..+|+|||..+..+..
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~-----~-~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALH-----E-AGKQIVLTSDRPPKELPG 260 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHH-----H-CCCcEEEECCCCHHHHHH
Confidence 8754 34566666665421 0 234578899988776544
No 205
>KOG0743|consensus
Probab=98.97 E-value=3.8e-09 Score=88.85 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh-CCceEEEEecC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEV 131 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~viiiDEi 131 (202)
++||+||||||||++..|+|++|.- ++....++.. . . ...+...+.. .+.+||+|++|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~y--------dIydLeLt~v--------~-~----n~dLr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNY--------DIYDLELTEV--------K-L----DSDLRHLLLATPNKSILLIEDI 295 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCC--------ceEEeeeccc--------c-C----cHHHHHHHHhCCCCcEEEEeec
Confidence 7999999999999999999999633 1222222211 1 0 1113333333 34589999999
Q ss_pred CCCCh------------------hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhH
Q psy1695 132 DKFPK------------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECI 186 (202)
Q Consensus 132 d~~~~------------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~ 186 (202)
|-.-. -.+..|+..+|.-. ...-..-|+|||||--... ...+.|.||-
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw---Sscg~ERIivFTTNh~EkL----DPALlRpGRm 361 (457)
T KOG0743|consen 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW---SSCGDERIIVFTTNHKEKL----DPALLRPGRM 361 (457)
T ss_pred ccccccccccccccccccCCcceeehHHhhhhhcccc---ccCCCceEEEEecCChhhc----CHhhcCCCcc
Confidence 65511 23455666666422 1111467899999976541 1224666654
No 206
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=4e-09 Score=90.73 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=60.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
+++|+||+|+|||+|++++++.+.. .+...-|+.. ..+.. .....+.......+.... ...++++|||++
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~--~~f~~---~~~~~l~~~~~~~f~~~~--~~~dvLiIDDiq 212 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS--ELFTE---HLVSAIRSGEMQRFRQFY--RNVDALFIEDIE 212 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH--HHHHH---HHHHHHhcchHHHHHHHc--ccCCEEEEcchh
Confidence 5899999999999999999999765 2211111111 10000 000000000001111111 234799999999
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.+.. ..++.|+.++..-. ..+..+|+|||..+..+..
T Consensus 213 ~l~~k~~~qeelf~l~N~l~------~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLH------TEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred hhcCChhhHHHHHHHHHHHH------HCCCcEEEecCCCHHHHhh
Confidence 9864 45666776655321 0345788999998877654
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.97 E-value=2.8e-09 Score=76.29 Aligned_cols=106 Identities=13% Similarity=0.301 Sum_probs=64.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccc----cCc-C---------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRY----KDK-G---------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV 118 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~----~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 118 (202)
.++++||+|+|||++++.+++.+.... +.. . ...+.......+..+..... ....+.+.+...+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~~~~l 83 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQ--TSDELRSLLIDAL 83 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS---HHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccC--CHHHHHHHHHHHH
Confidence 689999999999999999999864300 000 0 00111111111111111101 1223345666667
Q ss_pred hhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 119 TACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 119 ~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
......+|+|||+|.+ +....+.|..++++ .+..+|++.+..
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~---------~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNE---------SNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCS---------CBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhC---------CCCeEEEEEChh
Confidence 7776679999999999 99999999888884 667777777654
No 208
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=1.8e-09 Score=93.69 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=92.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-cCc-cchhhhhc-----ccc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGT-SRFVHKFN-----SRI 95 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-~~~-~~~~~~~~-----~~~ 95 (202)
.++||..+++.+.-++ . ...+++|.||+|+|||++++.++..+.+.... ... ..+..+.. ..+
T Consensus 192 ~v~Gq~~~~~al~laa----~------~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~ 261 (506)
T PRK09862 192 DVIGQEQGKRGLEITA----A------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW 261 (506)
T ss_pred EEECcHHHHhhhheec----c------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCc
Confidence 4678876665543222 1 22379999999999999999999886542110 000 00100000 000
Q ss_pred ---cCCCCc-hhHHHHHHhHH---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---cc---cCCceEE
Q psy1695 96 ---HFPNEN-HVSLYRLQLTN---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIF 162 (202)
Q Consensus 96 ---~~~~~~-~~~~~~~~l~~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~~---~~~~~~~ 162 (202)
.+..+. .++ ....+.+ .-.+.+..+..+++++||++.+++.+++.|++.||++.++. +. --.+..+
T Consensus 262 ~~rPfr~ph~~~s-~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~l 340 (506)
T PRK09862 262 RQRPFRSPHHSAS-LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQL 340 (506)
T ss_pred CCCCccCCCccch-HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEE
Confidence 000010 111 0000010 11234556667999999999999999999999999987631 11 2356788
Q ss_pred EEeeCcCh-------------HHHHHHHHHHHHhhhHHHHhccc
Q psy1695 163 LFLSNSGG-------------TEIMNTFLELRKSECIEFIFQCQ 193 (202)
Q Consensus 163 Iltsn~~~-------------~~i~~~~~~~~~~~~~r~~~~~~ 193 (202)
|.++|..+ +.+..+...+.....+||++++.
T Consensus 341 IAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~ 384 (506)
T PRK09862 341 VAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLE 384 (506)
T ss_pred EEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEE
Confidence 89999753 23444455566677778887654
No 209
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.95 E-value=3e-09 Score=93.75 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=59.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+|++|+|||+|+.++++++.... .+....|+.. ..+.. .+...........+.+.+. ..++|+|||++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita--eef~~---el~~al~~~~~~~f~~~y~--~~DLLlIDDIq 387 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS--EEFTN---EFINSIRDGKGDSFRRRYR--EMDILLVDDIQ 387 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH--HHHHH---HHHHHHHhccHHHHHHHhh--cCCEEEEehhc
Confidence 479999999999999999999975310 0111111111 11000 0000000000111222222 24899999999
Q ss_pred CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.+.. ..+..|+.+++.-. .++..+|+|||...+.+..
T Consensus 388 ~l~gke~tqeeLF~l~N~l~------e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLH------NANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred cccCCHHHHHHHHHHHHHHH------hcCCCEEEecCCChHhhhh
Confidence 8854 34566766666532 1345677899998877643
No 210
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.95 E-value=6.5e-09 Score=89.75 Aligned_cols=132 Identities=13% Similarity=0.167 Sum_probs=83.6
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|+..+...+.+.+........ .+++.|++||||+++|+++...... . ..+++.+++..+... .
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~~~i~c~~~~~~---~ 209 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQA------SVLISGESGTGKELIARAIHYNSRR---A--KGPFIKVNCAALPES---L 209 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCCc------EEEEEcCCCccHHHHHHHHHHhCCC---C--CCCeEEEECCCCCHH---H
Confidence 367777777777666666544322 6899999999999999999876432 1 345555555433110 0
Q ss_pred hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695 103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN 167 (202)
Q Consensus 103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn 167 (202)
....+.+ .-.+.+.....++++|||++.+++..|..|+++++++.+.. + .-..++.+|++||
T Consensus 210 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 210 ---LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred ---HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCC
Confidence 0000000 00112333445899999999999999999999999875432 1 1123578899998
Q ss_pred cChH
Q psy1695 168 SGGT 171 (202)
Q Consensus 168 ~~~~ 171 (202)
...+
T Consensus 287 ~~l~ 290 (457)
T PRK11361 287 RDLQ 290 (457)
T ss_pred CCHH
Confidence 7654
No 211
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.94 E-value=6.9e-09 Score=89.36 Aligned_cols=133 Identities=14% Similarity=0.207 Sum_probs=85.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|...+++.+...+...... ...++++|++||||+++|+++...... . ..+++.+++..+... .
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~v~v~c~~~~~~---~ 205 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS------DITVLLLGESGTGKEVLARALHQLSDR---K--DKRFVAINCAAIPEN---L 205 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC------CCCEEEECCCCcCHHHHHHHHHHhCCc---C--CCCeEEEECCCCChH---H
Confidence 4788888888887777654322 225789999999999999999887432 1 345666655443110 0
Q ss_pred hHHHHHHhH-----------HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695 103 VSLYRLQLT-----------NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN 167 (202)
Q Consensus 103 ~~~~~~~l~-----------~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn 167 (202)
....+. ....+.+.....++++|||++.++...|..|+++++++.+.. + ..-.++.+|++|+
T Consensus 206 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 206 ---LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATN 282 (445)
T ss_pred ---HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecC
Confidence 000000 000112333456899999999999999999999999876431 1 1123678899998
Q ss_pred cChHH
Q psy1695 168 SGGTE 172 (202)
Q Consensus 168 ~~~~~ 172 (202)
...+.
T Consensus 283 ~~l~~ 287 (445)
T TIGR02915 283 QDLKR 287 (445)
T ss_pred CCHHH
Confidence 77543
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.93 E-value=3.9e-10 Score=88.36 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=60.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHh----HHHHHHhhhhCCceEEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL----TNWIISNVTACDRAIFIF 128 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~l~~~~~~viii 128 (202)
.++++||+|+|||||..++++++....+. ..++.+....+ ...+...+ ...+.+.+. ..++++|
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~---~~v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~~--~~DlL~i 103 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPG---KRVVYLSAEEF-------IREFADALRDGEIEEFKDRLR--SADLLII 103 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTT---S-EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHHC--TSSEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcccc---ccceeecHHHH-------HHHHHHHHHcccchhhhhhhh--cCCEEEE
Confidence 47899999999999999999987641111 11111111000 00011000 111222222 3589999
Q ss_pred ecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695 129 DEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 174 (202)
Q Consensus 129 DEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~ 174 (202)
|+++.+... .+..|+.+++.-. .++..+|+||+..+..+.
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~------~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLI------ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHH------HTTSEEEEEESS-TTTTT
T ss_pred ecchhhcCchHHHHHHHHHHHHHH------hhCCeEEEEeCCCCcccc
Confidence 999998764 4778888777632 145578899988776654
No 213
>PRK15115 response regulator GlrR; Provisional
Probab=98.92 E-value=1e-08 Score=88.29 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=80.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|...++..+.+.+...... ...+++.|++||||+++|+++.+.... . ..+++.+++..+... .
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~------~~~vli~Ge~GtGk~~lA~~ih~~s~r---~--~~~f~~i~c~~~~~~---~ 200 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS------DVSVLINGQSGTGKEILAQAIHNASPR---A--SKPFIAINCGALPEQ---L 200 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC------CCeEEEEcCCcchHHHHHHHHHHhcCC---C--CCCeEEEeCCCCCHH---H
Confidence 3566665555555555443322 225789999999999999999887432 1 235666655443110 0
Q ss_pred hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeC
Q psy1695 103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN 167 (202)
Q Consensus 103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn 167 (202)
....+.+ ...+.+.....++++|||++.+++..|..|+++++++.+... ....++.+|++|+
T Consensus 201 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 201 ---LESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred ---HHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 0000000 000122334457899999999999999999999998764321 1223678899888
Q ss_pred cChH
Q psy1695 168 SGGT 171 (202)
Q Consensus 168 ~~~~ 171 (202)
....
T Consensus 278 ~~l~ 281 (444)
T PRK15115 278 RDLP 281 (444)
T ss_pred CCHH
Confidence 6543
No 214
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.91 E-value=4.3e-09 Score=73.25 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=57.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK 133 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~ 133 (202)
+.|+||||+|||++|..|++.+...........++. ..+...+...|. ...++++||+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~------~~~~~~~w~gY~--------------~q~vvi~DD~~~ 60 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT------RNPGDKFWDGYQ--------------GQPVVIIDDFGQ 60 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe------CCCccchhhccC--------------CCcEEEEeecCc
Confidence 468999999999999999999765100000000000 000111111111 247999999977
Q ss_pred CChh----HHHHHHHhcccCccccc--------ccCCceEEEEeeCc
Q psy1695 134 FPKG----LLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS 168 (202)
Q Consensus 134 ~~~~----~~~~L~~~le~~~~~~~--------~~~~~~~~Iltsn~ 168 (202)
.... ....++++++..++.-. ..+...++|+|||.
T Consensus 61 ~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 61 DNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 7754 67778888888765321 34556788889883
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.8e-09 Score=92.61 Aligned_cols=128 Identities=15% Similarity=0.196 Sum_probs=85.4
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCc-CccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDK-GTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~ 100 (202)
-++|.+..++.+.+.+.+...++ | +|+|+||||||.++..+|..+... .+.. .....+..+++.+.- -.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNN-----P---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA-Ga 241 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNN-----P---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA-GA 241 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCC-----C---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-cc
Confidence 49999999999999998876553 3 789999999999999999997651 0111 022333334433321 12
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+-|.+.+.+..- .+.+...+..|+||||++.+ ..++.|.|.+.|..|. ..+|-+|++.
T Consensus 242 kyRGeFEeRlk~v-l~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe---------L~~IGATT~~ 309 (786)
T COG0542 242 KYRGEFEERLKAV-LKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE---------LRCIGATTLD 309 (786)
T ss_pred cccCcHHHHHHHH-HHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC---------eEEEEeccHH
Confidence 3444455554443 34466666789999999654 2458899999999975 4455555544
No 216
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.90 E-value=5.8e-09 Score=95.03 Aligned_cols=149 Identities=15% Similarity=0.036 Sum_probs=88.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc-------c------CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN-------R------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY 79 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~-------~------~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~ 79 (202)
++.|.+.+-..|+|++.+++.+.-++...... + ...+...++||+|+||||||.+|+++++....
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR-- 518 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR-- 518 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc--
Confidence 35556667778999999999887777553211 0 00112337999999999999999999986332
Q ss_pred cCcC--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c
Q psy1695 80 KDKG--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q 154 (202)
Q Consensus 80 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~ 154 (202)
... ...+..+.+...........+.+. .-.+++..+..++++|||+++|++..+..|+++|+.+.++- |
T Consensus 519 -~~ytsG~~~s~vgLTa~~~~~d~~tG~~~-----le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 519 -SIYTSGKSSSSVGLTASIKFNESDNGRAM-----IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred -cccCCCCCCccccccchhhhcccccCccc-----ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCC
Confidence 100 011121111110000000000000 00123444556899999999999999999999999876421 1
Q ss_pred c---cCCceEEEEeeCcC
Q psy1695 155 I---SFQNTIFLFLSNSG 169 (202)
Q Consensus 155 ~---~~~~~~~Iltsn~~ 169 (202)
. -..++.+|.++|..
T Consensus 593 i~~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 593 IVATLKAETAILASCNPI 610 (915)
T ss_pred cceecCCCeEEEEEcCCc
Confidence 1 22466777777763
No 217
>KOG0732|consensus
Probab=98.88 E-value=7.8e-09 Score=94.92 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
.+=|.+..+..+.+.+..-+.++. +...|.+++|+||||||||..|+++|..+... ..-+.+++..-..
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~------~~kisffmrkgaD 339 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG------NRKISFFMRKGAD 339 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc------ccccchhhhcCch
Confidence 456667777777776655433322 13456689999999999999999999985441 1111122211111
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
-....++....+ ...+.+..+.+...|+++||||=+. ..+...|+.+|+.-. ...++++|-+|
T Consensus 340 ~lskwvgEaERq-lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-----sRgqVvvigAT 413 (1080)
T KOG0732|consen 340 CLSKWVGEAERQ-LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-----SRGQVVVIGAT 413 (1080)
T ss_pred hhccccCcHHHH-HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-----CCCceEEEccc
Confidence 112223312222 3344455555666899999998333 356777888887532 33678888888
Q ss_pred CcChHHHHHHHHHHHHhhhH
Q psy1695 167 NSGGTEIMNTFLELRKSECI 186 (202)
Q Consensus 167 n~~~~~i~~~~~~~~~~~~~ 186 (202)
|..... ...+++.||.
T Consensus 414 nRpda~----dpaLRRPgrf 429 (1080)
T KOG0732|consen 414 NRPDAI----DPALRRPGRF 429 (1080)
T ss_pred CCcccc----chhhcCCccc
Confidence 876532 1224566665
No 218
>PRK06620 hypothetical protein; Validated
Probab=98.88 E-value=1e-08 Score=80.11 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++|+||+|+||||+++++++.
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998776
No 219
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.86 E-value=1.7e-08 Score=87.41 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC-----
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP----- 98 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----- 98 (202)
++|...+...+.+.+..... .+..+++.|++||||+++|+++...... . ..+++.+++..+...
T Consensus 136 lig~s~~~~~v~~~i~~~a~------~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~--~~~~~~~~c~~~~~~~~~~~ 204 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSR------SDITVLINGESGTGKELVARALHRHSPR---A--NGPFIALNMAAIPKDLIESE 204 (463)
T ss_pred eeecCHHHHHHHHHHHHHhC------cCCeEEEECCCCCCHHHHHHHHHHhCCC---C--CCCeEEEeCCCCCHHHHHHH
Confidence 66777777777666655332 3346899999999999999999887432 1 345665555433110
Q ss_pred ----CCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695 99 ----NEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 169 (202)
Q Consensus 99 ----~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~ 169 (202)
..+ +.+ . .....+.+..+..+.++|||++.++...|..|+++++++.+... ....++.+|++|+..
T Consensus 205 lfg~~~~~~~~-~----~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 205 LFGHEKGAFTG-A----NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred hcCCCCCCCCC-c----ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 000 000 0 00001113334457899999999999999999999998765321 122366789999877
Q ss_pred hHH
Q psy1695 170 GTE 172 (202)
Q Consensus 170 ~~~ 172 (202)
.+.
T Consensus 280 l~~ 282 (463)
T TIGR01818 280 LEA 282 (463)
T ss_pred HHH
Confidence 654
No 220
>KOG0740|consensus
Probab=98.81 E-value=2.5e-08 Score=84.23 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=62.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
..+.|.+.++..+..++.--...+. .+..+.++|+.||||+|||.+++++|.+... .|..+..+.+..
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a--------tff~iSassLts 224 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA--------TFFNISASSLTS 224 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcc--------eEeeccHHHhhh
Confidence 3577888888888777754221110 0112336999999999999999999998432 333333333333
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~ 134 (202)
.+.+.. +.+...+....+.....|+||||+|++
T Consensus 225 K~~Ge~----eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 225 KYVGES----EKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred hccChH----HHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 333222 334556665555556699999999655
No 221
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=4.7e-08 Score=87.08 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=45.5
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
|..+|+...++ +++||+..++.+..++........ ..-.++|+||+|+|||++++.+|+.+..
T Consensus 74 W~eKyrP~~ld-----el~~~~~ki~~l~~~l~~~~~~~~---~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 74 WVEKYKPETQH-----ELAVHKKKIEEVETWLKAQVLENA---PKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred hHHHhCCCCHH-----HhcCcHHHHHHHHHHHHhcccccC---CCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44445555543 599999999998888776432211 1125899999999999999999998643
No 222
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.80 E-value=5.8e-09 Score=92.68 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=66.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH-HH---HHHhhhhCCceEEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT-NW---IISNVTACDRAIFIF 128 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~l~~~~~~viii 128 (202)
+++|.|++|||||++|+++++.+.. ..+|+++..........+.+. ....+. +. -.+.+..+..+++++
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~------~~pfv~i~~~~t~d~L~G~id-l~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPP------IMPFVELPLGVTEDRLIGGID-VEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCc------CCCeEecCcccchhhcccchh-hhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 5999999999999999999998533 123444432100000011110 000000 00 011233344579999
Q ss_pred ecCCCCChhHHHHHHHhcccCcccc---ccc---CCceEEEEeeCcCh
Q psy1695 129 DEVDKFPKGLLDVIIPFIDHHAVYN---QIS---FQNTIFLFLSNSGG 170 (202)
Q Consensus 129 DEid~~~~~~~~~L~~~le~~~~~~---~~~---~~~~~~Iltsn~~~ 170 (202)
||++++++.+++.|+++|+++.++. +.. -.+..+|.|+|...
T Consensus 91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 9999999999999999999987431 221 13567778888763
No 223
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.3e-08 Score=81.56 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
...+=.+|++.++||++|++.+.-|+++.+.... ..-.|..+|+.||+|+|||.+||.+|+..
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~ 74 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_pred HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh
Confidence 4566678999999999999999999987532211 01246689999999999999999999984
No 224
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=5.9e-08 Score=76.11 Aligned_cols=110 Identities=8% Similarity=0.086 Sum_probs=70.7
Q ss_pred ceEEEEecCCC-CcHHHHHHHHHHHhhccc-cCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh----hCCce
Q psy1695 51 ALAISLHGLPG-TGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRA 124 (202)
Q Consensus 51 pl~~ll~Gp~G-tGKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~ 124 (202)
..+++|.|..+ +||..++..+++.+.+.. ..+.+.++..+....-.......++ .++ .+.+.+.+. .+++.
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~--Idq-IReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS--IEQ-IRKLQDFLSKTSAISGYK 91 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc--HHH-HHHHHHHHhhCcccCCcE
Confidence 34799999998 999999999999987720 0011222221110000000011222 111 223333333 34569
Q ss_pred EEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 125 IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 125 viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
|++|+++|+|+.++.|.|++.||+++ .+++||++|+...
T Consensus 92 ViII~~ae~mt~~AANALLKtLEEPP-------~~t~fILit~~~~ 130 (263)
T PRK06581 92 VAIIYSAELMNLNAANSCLKILEDAP-------KNSYIFLITSRAA 130 (263)
T ss_pred EEEEechHHhCHHHHHHHHHhhcCCC-------CCeEEEEEeCChh
Confidence 99999999999999999999999998 8999999887643
No 225
>PF13173 AAA_14: AAA domain
Probab=98.73 E-value=8.5e-08 Score=68.78 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=56.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHH-HhHHHHHHhhhhCCceEEEEecC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWIISNVTACDRAIFIFDEV 131 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~viiiDEi 131 (202)
.++++||.|||||++++.+++.+.. ...++.+++... .... ... .+...+.+.. .....+++|||+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~------~~~~~yi~~~~~-----~~~~-~~~~~~~~~~~~~~-~~~~~~i~iDEi 70 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLP------PENILYINFDDP-----RDRR-LADPDLLEYFLELI-KPGKKYIFIDEI 70 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc------cccceeeccCCH-----HHHH-HhhhhhHHHHHHhh-ccCCcEEEEehh
Confidence 6899999999999999999988652 112222222211 0000 000 0111222221 114578999999
Q ss_pred CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 132 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 132 d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
++++ +....+..+.+.+ .+..+|+|+....
T Consensus 71 q~~~-~~~~~lk~l~d~~--------~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 71 QYLP-DWEDALKFLVDNG--------PNIKIILTGSSSS 100 (128)
T ss_pred hhhc-cHHHHHHHHHHhc--------cCceEEEEccchH
Confidence 9997 5777777777764 3566666665543
No 226
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.73 E-value=4.1e-08 Score=82.23 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=83.5
Q ss_pred HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-Cc------Cccc-----
Q psy1695 19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DK------GTSR----- 86 (202)
Q Consensus 19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~------~~~~----- 86 (202)
.+...++||+..+..+....- .+ +-.++|+.|+.|+|||+++|+|+..|-.... .| ...+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av----~P----~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~ 85 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV----DP----QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCD 85 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc----cc----ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhH
Confidence 345679999987777643311 11 1115899999999999999999999754110 00 0000
Q ss_pred -hhhhh--ccc---------ccCCCCc-----hhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHH
Q psy1695 87 -FVHKF--NSR---------IHFPNEN-----HVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDV 141 (202)
Q Consensus 87 -~~~~~--~~~---------~~~~~~~-----~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~ 141 (202)
+.... ... +...+.+ .+|.. ++.+.+ .+.+..+..+|+++||++.++...++.
T Consensus 86 ~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGsl--Di~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~ 163 (423)
T COG1239 86 ECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSL--DIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDA 163 (423)
T ss_pred HHHhhccccccccccceecceecCCCccchhhhcccc--CHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHH
Confidence 00000 000 0000000 11100 011111 122334445999999999999999999
Q ss_pred HHHhcccCccc---ccccC---CceEEEEeeCcChHHHHHHH
Q psy1695 142 IIPFIDHHAVY---NQISF---QNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 142 L~~~le~~~~~---~~~~~---~~~~~Iltsn~~~~~i~~~~ 177 (202)
|+.++++|... +|.+. .+.++|.|.|.....+-..+
T Consensus 164 LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqL 205 (423)
T COG1239 164 LLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQL 205 (423)
T ss_pred HHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhh
Confidence 99999998422 34322 35677888888754443333
No 227
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.69 E-value=1.1e-07 Score=81.79 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=68.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH-----------HHHHhhhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN-----------WIISNVTA 120 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~l~~ 120 (202)
..++++|++||||+++|+++...... . ..+|+.+++..+... . ....+.+ ...+.+..
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~---~--~~~~i~~~c~~~~~~---~---~~~~lfg~~~~~~~~~~~~~~g~~~~ 231 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSAR---S--EKPLVTLNCAALNES---L---LESELFGHEKGAFTGADKRREGRFVE 231 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCC---C--CCCeeeeeCCCCCHH---H---HHHHhcCCCCCCcCCCCcCCCCceeE
Confidence 35788999999999999999876432 1 345666665433110 0 0000000 00011233
Q ss_pred CCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcChH
Q psy1695 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 121 ~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~~~ 171 (202)
...++++|||++.+++..|..|+++++++.+.. + ....++.+|++|+....
T Consensus 232 a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~ 286 (441)
T PRK10365 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA 286 (441)
T ss_pred CCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH
Confidence 445889999999999999999999999876432 1 11225568888877653
No 228
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.67 E-value=8.4e-08 Score=80.44 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=60.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 129 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD 129 (202)
.|.++.|+||+|+|||+|..++...+....+. ...|.. ++..++.......+.. .- ...+...+. ....|+.||
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~HFh~-Fm~~vh~~l~~~~~~~-~~-l~~va~~l~-~~~~lLcfD 134 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR--RVHFHE-FMLDVHSRLHQLRGQD-DP-LPQVADELA-KESRLLCFD 134 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc--cccccH-HHHHHHHHHHHHhCCC-cc-HHHHHHHHH-hcCCEEEEe
Confidence 56689999999999999999998886542111 111111 1111110000000000 00 111112222 123699999
Q ss_pred cCCCCChh---HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 130 EVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 130 Eid~~~~~---~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
|++--+.. .+..|+..+=+ ..+++|.|||..++.+-+.-
T Consensus 135 EF~V~DiaDAmil~rLf~~l~~---------~gvvlVaTSN~~P~~Ly~~g 176 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALFK---------RGVVLVATSNRPPEDLYKNG 176 (362)
T ss_pred eeeccchhHHHHHHHHHHHHHH---------CCCEEEecCCCChHHHcCCc
Confidence 99665543 33444444433 67899999999998764443
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=2.1e-07 Score=81.37 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=48.9
Q ss_pred ccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 5 DKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 5 ~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.|+.+|....+. ++.-+.+-++.+..++........ ....++|+||+|||||++++.||+++..
T Consensus 7 ~~W~~ky~P~~~~-----eLavhkkKv~eV~~wl~~~~~~~~---~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 7 EPWVEKYAPKTLD-----ELAVHKKKVEEVRSWLEEMFSGSS---PKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CccchhcCCCCHH-----HhhccHHHHHHHHHHHHHHhccCC---CcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3466667776665 366678888888888887654322 2336899999999999999999999744
No 230
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.65 E-value=6.4e-08 Score=80.43 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=44.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++|++++++.+.+.++....+.. .+...++|+||||+|||++|++|++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3799999999999999988765322 12346899999999999999999999744
No 231
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.64 E-value=5.6e-07 Score=72.32 Aligned_cols=92 Identities=16% Similarity=0.301 Sum_probs=51.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC-----------ccchhhhhcccccCCCCchh-HHHHHHhHHHHHHhhhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----------TSRFVHKFNSRIHFPNENHV-SLYRLQLTNWIISNVTA 120 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~ 120 (202)
.++++||+|+|||++++.+++.+.+ ... ...+.......+..+..+.. ......+...+......
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~---~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQ---ERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC---CCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 5889999999999999999988653 110 00011111111111111110 00111222333333334
Q ss_pred CCceEEEEecCCCCChhHHHHHHHhcc
Q psy1695 121 CDRAIFIFDEVDKFPKGLLDVIIPFID 147 (202)
Q Consensus 121 ~~~~viiiDEid~~~~~~~~~L~~~le 147 (202)
....+++|||++.+++...+.|..+.+
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 555799999999999888887765544
No 232
>KOG0730|consensus
Probab=98.62 E-value=8.4e-08 Score=84.02 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=88.7
Q ss_pred CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
+-|-...+..+...+.--+..++ +-+.|.+++++||||+|||.+++++|+.... .+..++.+.+...
T Consensus 186 ~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a--------~~~~i~~peli~k 257 (693)
T KOG0730|consen 186 IGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA--------FLFLINGPELISK 257 (693)
T ss_pred cchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc--------eeEecccHHHHHh
Confidence 44445555555555544333322 1235667999999999999999999998321 2222333322222
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh----------hHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~----------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
.. +.+...+...+.+........+++|||++.+-+ .+...|+.+++.-. .-.+.++|.++|.
T Consensus 258 ~~---gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----~~~~vivl~atnr 329 (693)
T KOG0730|consen 258 FP---GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----PDAKVIVLAATNR 329 (693)
T ss_pred cc---cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----CcCcEEEEEecCC
Confidence 22 223333344444444444468999999987764 34556777776522 2267888888877
Q ss_pred ChHHHHHHHHHHHHhhhHH---------HHhccchhHHHhhc
Q psy1695 169 GGTEIMNTFLELRKSECIE---------FIFQCQPLKVYLKK 201 (202)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~r---------~~~~~~~~~~~~~~ 201 (202)
... +... +++ ||.+ -..+++.|.++.||
T Consensus 330 p~s-ld~a---lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~ 366 (693)
T KOG0730|consen 330 PDS-LDPA---LRR-GRFDREVEIGIPGSDGRLDILRVLTKK 366 (693)
T ss_pred ccc-cChh---hhc-CCCcceeeecCCCchhHHHHHHHHHHh
Confidence 643 2222 233 5543 24455556666655
No 233
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.62 E-value=2.7e-07 Score=76.00 Aligned_cols=136 Identities=8% Similarity=0.084 Sum_probs=89.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC-
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE- 100 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 100 (202)
+.++++...++.+....++...-.. .+++.|.+||||-.+|++-...-.+ . .++|+..+++.+.....
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~AmlDA------PLLI~GeTGTGKdLlAkaCH~~S~R---~--~~pFlalNCA~lPe~~aE 272 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAMLDA------PLLITGETGTGKDLLAKACHLASPR---H--SKPFLALNCASLPEDAAE 272 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhccCC------CeEEecCCCchHHHHHHHHhhcCcc---c--CCCeeEeecCCCchhHhH
Confidence 3578888888888887777654433 4799999999999999887655222 1 46777777765533210
Q ss_pred -chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcCh
Q psy1695 101 -NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSGG 170 (202)
Q Consensus 101 -~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~~ 170 (202)
..++ |... ...-.+.+..+..+.+++|||..|++..|..|++++.+|.+.. + .-+-++.+|.+|...-
T Consensus 273 sElFG-~apg-~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL 345 (511)
T COG3283 273 SELFG-HAPG-DEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL 345 (511)
T ss_pred HHHhc-CCCC-CCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence 0000 0000 0000122333445788899999999999999999999997643 2 3456788888886553
No 234
>PRK09087 hypothetical protein; Validated
Probab=98.59 E-value=1.3e-07 Score=74.50 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=52.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+||+|+||||+++++++.... .++... . + ...+...+. .++++|||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~--~-----------~----~~~~~~~~~---~~~l~iDDi~ 97 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN--E-----------I----GSDAANAAA---EGPVLIEDID 97 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH--H-----------c----chHHHHhhh---cCeEEEECCC
Confidence 4799999999999999988876211 111110 0 0 111111111 2589999999
Q ss_pred CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.... .+..|+.++..-. .....+|+||+..+..+..
T Consensus 98 ~~~~-~~~~lf~l~n~~~------~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 98 AGGF-DETGLFHLINSVR------QAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred CCCC-CHHHHHHHHHHHH------hCCCeEEEECCCChHHhcc
Confidence 8753 3455666554321 0356688888887765543
No 235
>KOG0741|consensus
Probab=98.58 E-value=1.1e-06 Score=75.69 Aligned_cols=106 Identities=16% Similarity=0.290 Sum_probs=60.6
Q ss_pred CCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc-cccC-CCCchhHHHHHHhHHHHHHhhhhCCceE
Q psy1695 49 TKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHF-PNENHVSLYRLQLTNWIISNVTACDRAI 125 (202)
Q Consensus 49 ~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~v 125 (202)
+.|+ .++|+||||+|||.||..+|.. . .-+|+.+..+ .+.+ +..... .. ...+.+....++-.+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~------S--~FPFvKiiSpe~miG~sEsaKc----~~-i~k~F~DAYkS~lsi 601 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS------S--DFPFVKIISPEDMIGLSESAKC----AH-IKKIFEDAYKSPLSI 601 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh------c--CCCeEEEeChHHccCccHHHHH----HH-HHHHHHHhhcCcceE
Confidence 4566 4999999999999999999876 2 2345544322 1111 110000 01 122233334556799
Q ss_pred EEEecCCCCC----------hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 126 FIFDEVDKFP----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 126 iiiDEid~~~----------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
+++|+++++- ..+.+.|+=++.+.+ ...+..+|+.|+...+.
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p-----pkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP-----PKGRKLLIFGTTSRREV 653 (744)
T ss_pred EEEcchhhhhcccccCchhhHHHHHHHHHHhccCC-----CCCceEEEEecccHHHH
Confidence 9999998762 234555555555543 12456777777665443
No 236
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.57 E-value=2.4e-07 Score=76.13 Aligned_cols=66 Identities=27% Similarity=0.208 Sum_probs=48.0
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI 95 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 95 (202)
.+.++||.+|-+..--.++-..++.- .+.++|+.||||||||.+|.++|+.|-. +.+|+.+..+.+
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~---aGrgiLi~GppgTGKTAlA~gIa~eLG~------dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKM---AGRGILIVGPPGTGKTALAMGIARELGE------DVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcc---cccEEEEECCCCCcHHHHHHHHHHHhCC------CCCceeecccee
Confidence 35799999998886555544333322 3347999999999999999999999765 456666655544
No 237
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.57 E-value=6.5e-07 Score=75.79 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=62.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHH-hhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS-IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV 131 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEi 131 (202)
.+++.||+|||||+++.+++.+ ... .| .+... ...+. .+.....+.+ +.+++|+|||+
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~---sG---~f~T~---------a~Lf~----~L~~~~lg~v--~~~DlLI~DEv 269 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILI---SG---GTITV---------AKLFY----NISTRQIGLV--GRWDVVAFDEV 269 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHH---cC---CcCcH---------HHHHH----HHHHHHHhhh--ccCCEEEEEcC
Confidence 6999999999999999998887 222 11 11110 01111 1111111222 23589999999
Q ss_pred CCCCh----hHHHHHHHhcccCcccccc--cCCceEEEEeeCcC
Q psy1695 132 DKFPK----GLLDVIIPFIDHHAVYNQI--SFQNTIFLFLSNSG 169 (202)
Q Consensus 132 d~~~~----~~~~~L~~~le~~~~~~~~--~~~~~~~Iltsn~~ 169 (202)
..++- +..+.|...|+.|.+..+. -..++.++|.-|..
T Consensus 270 gylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 270 ATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred CCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 88653 4678888889999887663 34678888988875
No 238
>PHA02774 E1; Provisional
Probab=98.53 E-value=1.9e-07 Score=81.66 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=77.8
Q ss_pred HHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH
Q psy1695 33 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN 112 (202)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (202)
.+..+++.++.+.+ +-..++|+||||||||++|.+|++.+.. .. -.++ +.. +.. +
T Consensus 419 ~fl~~lk~~l~~~P---Kknciv~~GPP~TGKS~fa~sL~~~L~G---~v--i~fv--N~~-------s~F--w------ 473 (613)
T PHA02774 419 SFLTALKDFLKGIP---KKNCLVIYGPPDTGKSMFCMSLIKFLKG---KV--ISFV--NSK-------SHF--W------ 473 (613)
T ss_pred HHHHHHHHHHhcCC---cccEEEEECCCCCCHHHHHHHHHHHhCC---CE--EEEE--ECc-------ccc--c------
Confidence 44456666664422 2237999999999999999999999754 10 0111 110 000 0
Q ss_pred HHHHhhhhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccc------cccCCceEEEEeeCcChHHHHHHH-H------
Q psy1695 113 WIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNSGGTEIMNTF-L------ 178 (202)
Q Consensus 113 ~~~~~l~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~------~~~~~~~~~Iltsn~~~~~i~~~~-~------ 178 (202)
.+.+.. ..+++|||+-.. .......|..+|+..++.- .+......+|+|||.....-.... |
T Consensus 474 --Lqpl~d--~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~ 549 (613)
T PHA02774 474 --LQPLAD--AKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITV 549 (613)
T ss_pred --cchhcc--CCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEE
Confidence 111222 368999999322 2334446778888654321 134555778999998754321111 1
Q ss_pred -------HHHHhhhHHHHhccchhHHHhhc
Q psy1695 179 -------ELRKSECIEFIFQCQPLKVYLKK 201 (202)
Q Consensus 179 -------~~~~~~~~r~~~~~~~~~~~~~~ 201 (202)
.+..+|.|.|.+.=..-|+|.++
T Consensus 550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~r 579 (613)
T PHA02774 550 FEFPNPFPLDENGNPVFELTDANWKSFFER 579 (613)
T ss_pred EECCCCCCcCCCCCEeeeeCchhHHHHHHH
Confidence 13335555555555555555544
No 239
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.52 E-value=2.3e-07 Score=74.74 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=82.4
Q ss_pred HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
.|++.+.-...+....++++.+...... . .+++.||+|.|||++|+.+.+.-..+ .-.+..|+.+++..+-+.
T Consensus 181 ~lksgiatrnp~fnrmieqierva~rsr---~--p~ll~gptgagksflarriyelk~ar--hq~sg~fvevncatlrgd 253 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIRSR---A--PILLNGPTGAGKSFLARRIYELKQAR--HQFSGAFVEVNCATLRGD 253 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhhcc---C--CeEeecCCCcchhHHHHHHHHHHHHH--HhcCCceEEEeeeeecCc
Confidence 3555666667777777777777543321 2 47999999999999999987752221 123567888887766543
Q ss_pred CCc--hhHHHHHHh---HHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 99 NEN--HVSLYRLQL---TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 99 ~~~--~~~~~~~~l---~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
..- ..+.....+ ...-.+.+.....+++++|||..+..+-|..|++.+++.++
T Consensus 254 ~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf 311 (531)
T COG4650 254 TAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRF 311 (531)
T ss_pred hHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhcc
Confidence 210 011000000 11223345666779999999999999999999999998764
No 240
>PRK04296 thymidine kinase; Provisional
Probab=98.48 E-value=1.1e-06 Score=67.32 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+++||+|+|||+++..++..+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999888887644
No 241
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.47 E-value=2.9e-06 Score=68.87 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhhh
Q psy1695 14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHKF 91 (202)
Q Consensus 14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~~ 91 (202)
+++...-.+.+||-..|.+.+ +.+...+..|. ..++.+++++|++|.|||++++.+.+. ++....+. .-+++.+.
T Consensus 26 eRI~~i~~~rWIgY~~A~~~L-~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 26 ERIAYIRADRWIGYPRAKEAL-DRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred HHHHHHhcCCeecCHHHHHHH-HHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEEEe
Confidence 344444557899999888776 66677676665 445557999999999999999999886 33111110 01111111
Q ss_pred c--------------ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC
Q psy1695 92 N--------------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134 (202)
Q Consensus 92 ~--------------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~ 134 (202)
+ ..+..+...... ...+...+...+......++||||++.+
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~--~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYRPRDR--VAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccCCCCC--HHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 1 111111111111 1122344556677777899999999875
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.47 E-value=1.2e-06 Score=64.58 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++-+.++|+||+|||+++..++..|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3456899999999999999999999876
No 243
>KOG1969|consensus
Probab=98.47 E-value=7.4e-07 Score=79.09 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=54.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHh--hh-hCCceEEEEe
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISN--VT-ACDRAIFIFD 129 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~-~~~~~viiiD 129 (202)
.+||+||||-|||++|+.+|+. .|+ .++.++.++ ........+.+...+... +. ......+|+|
T Consensus 328 ilLL~GppGlGKTTLAHViAkq------aGY--sVvEINASD-----eRt~~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQ------AGY--SVVEINASD-----ERTAPMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHh------cCc--eEEEecccc-----cccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 5999999999999999999998 432 234444332 222222333333333222 11 1233678899
Q ss_pred cCCCCChhHHHHHHHhccc
Q psy1695 130 EVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 130 Eid~~~~~~~~~L~~~le~ 148 (202)
|||=.++.+.+.|+.++..
T Consensus 395 EIDGa~~~~Vdvilslv~a 413 (877)
T KOG1969|consen 395 EIDGAPRAAVDVILSLVKA 413 (877)
T ss_pred cccCCcHHHHHHHHHHHHh
Confidence 9999999999999999973
No 244
>PRK14974 cell division protein FtsY; Provisional
Probab=98.46 E-value=1.2e-05 Score=66.90 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|+||+|+|||+++..+|..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999988755
No 245
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.6e-06 Score=73.32 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=62.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH----HHHHHhhhhCCceEEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF 128 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~l~~~~~~viii 128 (202)
.++|+||+|.|||||+.+++++... .+....++.+.... +...+...+. ..+.+.. ..++++|
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se~-------f~~~~v~a~~~~~~~~Fk~~y---~~dlllI 181 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSED-------FTNDFVKALRDNEMEKFKEKY---SLDLLLI 181 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHHH-------HHHHHHHHHHhhhHHHHHHhh---ccCeeee
Confidence 4799999999999999999999766 32211222111110 0100111101 1112222 3479999
Q ss_pred ecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhh
Q psy1695 129 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSEC 185 (202)
Q Consensus 129 DEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~ 185 (202)
|+++.+.. ..+..+.-++..-. + .+.-+|+||...+..+....-+++.+..
T Consensus 182 DDiq~l~gk~~~qeefFh~FN~l~-----~-~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 182 DDIQFLAGKERTQEEFFHTFNALL-----E-NGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred chHhHhcCChhHHHHHHHHHHHHH-----h-cCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 99988654 23444444333211 0 2236788998888877655444444433
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.44 E-value=1.8e-06 Score=67.65 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=81.2
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|-+...+.+.+.-.+++.+.. ..++||+|.-|||||++++++...+.. .+. ..+++...++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~---~gl--rLVEV~k~dl------- 124 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYAD---EGL--RLVEVDKEDL------- 124 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHh---cCC--eEEEEcHHHH-------
Confidence 588999999999999998886632 236999999999999999999998655 332 2333322211
Q ss_pred hHHHHHHhHHHHHHhhhhCCc-eEEEEecCCCCCh-hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 103 VSLYRLQLTNWIISNVTACDR-AIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~-~viiiDEid~~~~-~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.. ...+.+.++..+. -|+|+|+..--+. .....|..+||.+. ...-.|++|-.|||..
T Consensus 125 ----~~--Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v---e~rP~NVl~YATSNRR 184 (287)
T COG2607 125 ----AT--LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV---EGRPANVLFYATSNRR 184 (287)
T ss_pred ----hh--HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc---ccCCCeEEEEEecCCc
Confidence 00 2334555666655 5677788744433 45666777777541 0122789999999964
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=1.8e-05 Score=66.98 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=64.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcCccchhhhhc------------ccccCCCCchhHHHHHHhHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFN------------SRIHFPNENHVSLYRLQLTNWIIS 116 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~ 116 (202)
.|..++|+||+|+|||+++..+|..+.... ..+....++..+. ....+.+-.....+. .+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~-~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFK-DLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHH-HHHHHHHH
Confidence 466799999999999999999998764310 0111111111111 111111101111011 11222211
Q ss_pred hhhhCCceEEEEecCCCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 117 NVTACDRAIFIFDEVDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 117 ~l~~~~~~viiiDEid~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
...+++|+||++.+.+.+. ...+.++++... ....+++++.++.+.+.+.+.+
T Consensus 252 ---~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 252 ---SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ---hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHH
Confidence 2346899999999998653 345566665421 0136788888888877776543
No 248
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.41 E-value=1.2e-06 Score=68.22 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|++.-++.+.+.+... ...+++++||.|+|||++++.+.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~--------~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--------PSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CCCHHHHHHHHHHHHHhh--------cCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 367777777776655432 1226899999999999999999998733
No 249
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.40 E-value=5.5e-07 Score=78.84 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=43.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++++|++++++.+...+.....+-. . +...++|+||||+|||++|+.|++.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~-~-~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLE-E-KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcC-C-CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3589999999999999977654433 2 233799999999999999999999863
No 250
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=71.79 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=67.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh------hcccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA 124 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 124 (202)
|.++.|||+.|+|||+|....-..+....+. ...|..+ .+..+.+.. ..+. .+...+ . ....
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~--R~HFh~FM~~vH~~l~~l~g~~-dpl~----~iA~~~---~--~~~~ 132 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLPGERKR--RLHFHRFMARVHQRLHTLQGQT-DPLP----PIADEL---A--AETR 132 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCCccccc--cccHHHHHHHHHHHHHHHcCCC-CccH----HHHHHH---H--hcCC
Confidence 3479999999999999999998886542111 1111111 111111111 1110 001111 1 1247
Q ss_pred EEEEecCCCCChh---HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695 125 IFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYL 199 (202)
Q Consensus 125 viiiDEid~~~~~---~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 199 (202)
|+-|||++=-+.. ++..|+..|=. +.++++.|||..++.+-..-+ .|.+|+=-|+-||.++
T Consensus 133 vLCfDEF~VtDI~DAMiL~rL~~~Lf~---------~GV~lvaTSN~~P~~LY~dGl-----qR~~FLP~I~li~~~~ 196 (367)
T COG1485 133 VLCFDEFEVTDIADAMILGRLLEALFA---------RGVVLVATSNTAPDNLYKDGL-----QRERFLPAIDLIKSHF 196 (367)
T ss_pred EEEeeeeeecChHHHHHHHHHHHHHHH---------CCcEEEEeCCCChHHhcccch-----hHHhhHHHHHHHHHhe
Confidence 9999999655543 34444443333 678899999999987644333 2345555555555543
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.39 E-value=8e-06 Score=62.94 Aligned_cols=114 Identities=11% Similarity=0.181 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc------------c-cccCC--CCchhHHHHHHhHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------------S-RIHFP--NENHVSLYRLQLTNWII 115 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~-~~~~~--~~~~~~~~~~~l~~~~~ 115 (202)
|..++|+||+|+|||+++-.+|..+.. .+....++..+. + .+..+ ......... .+.....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-EIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH-HHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH-HHHHHHH
Confidence 557999999999999999999988765 221111111110 0 00000 000000000 0111122
Q ss_pred HhhhhCCceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695 116 SNVTACDRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM 174 (202)
Q Consensus 116 ~~l~~~~~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~ 174 (202)
+.......++|+||-..+.+.+ ..+.|.++++.. .-.++.+++.++.+.+.+.
T Consensus 77 ~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHH
T ss_pred HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHH
Confidence 2334455689999999988753 344555544432 1167888888888877665
No 252
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.36 E-value=9.2e-07 Score=71.62 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 29 LAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 29 ~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.-++.+.+.+..... ....+.++|++|+|||++|..+++.
T Consensus 3 ~~~~~l~~~L~~~~~------~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSN------EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHHHTTTT------SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHHHhhCCCC------CeEEEEEEcCCcCCcceeeeecccc
Confidence 344555555544221 3336899999999999999999877
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.36 E-value=1.5e-06 Score=63.88 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++||||+|||+++..++..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999988643
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.34 E-value=5.9e-06 Score=61.38 Aligned_cols=56 Identities=7% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHhhhhCCceEEEEecCCCC-Ch--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 113 WIISNVTACDRAIFIFDEVDKF-PK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 113 ~~~~~l~~~~~~viiiDEid~~-~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
...+.+....++++||||+..+ +- --.+.++++++..+ .+.-+|+|....++.+.+
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-------~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-------EDLELVLTGRNAPKELIE 144 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHH
Confidence 3445566677899999999665 22 23556777888766 788899999887776544
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.34 E-value=4.5e-07 Score=79.28 Aligned_cols=131 Identities=12% Similarity=0.106 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC-----
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN----- 99 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 99 (202)
++++...+.+.+.+.+.....- .+++.|.|||||-.+|+++.+.- ....+|+.+++..+....
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~------pvll~GEtGtGKe~laraiH~~s------~~~gpfvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDL------PVLLQGETGTGKEVLARAIHQNS------EAAGPFVAVNCAAIPEALIESEL 383 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCC------CeEecCCcchhHHHHHHHHHhcc------cccCCeEEEEeccchHHhhhHHH
Confidence 4666666776666666543322 58999999999999999998873 234567766664442211
Q ss_pred ----C-chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c-c-cCCceEEEEeeCcChH
Q psy1695 100 ----E-NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I-SFQNTIFLFLSNSGGT 171 (202)
Q Consensus 100 ----~-~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~-~-~~~~~~~Iltsn~~~~ 171 (202)
+ .+.+.+ .+-....+...+.+.+|+|||..|+-++|..|+++|+++.++- + . ..-..-+|.+|+..-.
T Consensus 384 FGy~~GafTga~----~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~ 459 (606)
T COG3284 384 FGYVAGAFTGAR----RKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA 459 (606)
T ss_pred hccCccccccch----hccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH
Confidence 1 111101 1112234455566889999999999999999999999998652 2 1 2223446777765533
No 256
>KOG1970|consensus
Probab=98.33 E-value=6.6e-06 Score=71.15 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCc-eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.-+..-+..+..+++. +.... ++.+ ..++++||+|||||+..+.+++++..
T Consensus 84 LAVHkkKI~eVk~WL~~-~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQ-VAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred HhhhHHhHHHHHHHHHH-HHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 33455666777777772 21111 1223 25899999999999999999999754
No 257
>PHA00729 NTP-binding motif containing protein
Probab=98.32 E-value=1.2e-05 Score=63.01 Aligned_cols=26 Identities=19% Similarity=0.361 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
...++++|+||||||++|.++++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999999864
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=2.2e-05 Score=66.31 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHhHhccC-CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc-------------
Q psy1695 27 QELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------------- 92 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~~-~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------- 92 (202)
...+.+.+.+.+...+.... ...+|..++|+||+|+|||+++..||..+.. .+....++..+.
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHh
Confidence 34556666666655443221 0134557899999999999999999998765 321111111110
Q ss_pred ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 93 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.....+.. ... ....+...+...-.....++|+||-+.+.+. ...+.|.++++... -..+++++.++...
T Consensus 293 e~lgipv~-v~~-d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~------PdevlLVLsATtk~ 364 (436)
T PRK11889 293 KTIGFEVI-AVR-DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKS 364 (436)
T ss_pred hhcCCcEE-ecC-CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC------CCeEEEEECCccCh
Confidence 00000000 000 0111222222211123468999999988875 34566666665432 13455666666666
Q ss_pred HHHHH
Q psy1695 171 TEIMN 175 (202)
Q Consensus 171 ~~i~~ 175 (202)
..+.+
T Consensus 365 ~d~~~ 369 (436)
T PRK11889 365 KDMIE 369 (436)
T ss_pred HHHHH
Confidence 55444
No 259
>PRK10536 hypothetical protein; Provisional
Probab=98.30 E-value=1e-05 Score=64.50 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChhHHHHHHHhccc
Q psy1695 124 AIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 124 ~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
++||+||++.+++.....++.-+.+
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR~g~ 202 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTRLGE 202 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhhcCC
Confidence 8999999999999888888877665
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.30 E-value=1e-07 Score=79.16 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=77.0
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccc
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSR 86 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~ 86 (202)
-+..|-+.+-..++|.+.++..+.-++-........ .+...++||+|.||+|||.+.+.+++..... ...|....
T Consensus 14 ~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s 93 (331)
T PF00493_consen 14 IFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSS 93 (331)
T ss_dssp HHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGST
T ss_pred HHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcc
Confidence 355666777788999988877776555443322110 1234579999999999999998775542220 00000000
Q ss_pred hhhhhcccccCCCCchhHHHH-HHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccc------cCCc
Q psy1695 87 FVHKFNSRIHFPNENHVSLYR-LQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SFQN 159 (202)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~------~~~~ 159 (202)
-.....+ . ..++.. +.|. + . +++-.+..+|+.|||+|+|+.+..+.|.+.||.+.++-.. -..+
T Consensus 94 ~~gLta~-~-~~d~~~-~~~~le--a----Galvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 94 AAGLTAS-V-SRDPVT-GEWVLE--A----GALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CCCCCEE-E-CCCGGT-SSECEE--E-----HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred cCCccce-e-cccccc-ceeEEe--C----CchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccch
Confidence 0000000 0 000000 0000 0 1 1233345689999999999999999999999998754221 2345
Q ss_pred eEEEEeeCcCh
Q psy1695 160 TIFLFLSNSGG 170 (202)
Q Consensus 160 ~~~Iltsn~~~ 170 (202)
+.++.++|...
T Consensus 165 ~svlaa~NP~~ 175 (331)
T PF00493_consen 165 CSVLAAANPKF 175 (331)
T ss_dssp -EEEEEE--TT
T ss_pred hhhHHHHhhhh
Confidence 66777777653
No 261
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.29 E-value=5.6e-06 Score=59.99 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||||+||||+|+.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999874
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.27 E-value=6.8e-06 Score=63.34 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
..++|+||+..++......|+..+..
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh
Confidence 47999999999999999989888876
No 263
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.19 E-value=2e-06 Score=76.92 Aligned_cols=52 Identities=31% Similarity=0.392 Sum_probs=43.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+.|.++++||+++++.+..++... . +++|+||||||||++++++++.+.+
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~----~------~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQK----R------NVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcC----C------CEEEECCCCCCHHHHHHHHHHHcCc
Confidence 44578899999999999887776632 1 6789999999999999999999865
No 264
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=2.9e-06 Score=75.36 Aligned_cols=127 Identities=8% Similarity=0.073 Sum_probs=72.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHH--HHHhHH----HHHHhhhhCCceEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY--RLQLTN----WIISNVTACDRAIF 126 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~----~~~~~l~~~~~~vi 126 (202)
++++.|+.|+|||+++++++..|-. ..+|+....+ .+....++.. ...+.. .-.+.+..+..+|+
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~------~~p~r~~p~~---~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL 97 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPA------GTPLRRLPPG---IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVL 97 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCC------CCCcccCCCC---CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEE
Confidence 6999999999999999999998643 1233332211 0001111100 000000 00122444556899
Q ss_pred EEecCCCCChhHHHHHHHhcccCcccc---cc--cCCce-EEEEeeCcChHHHHHHHHHHHHhhhHHHHhccc
Q psy1695 127 IFDEVDKFPKGLLDVIIPFIDHHAVYN---QI--SFQNT-IFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQ 193 (202)
Q Consensus 127 iiDEid~~~~~~~~~L~~~le~~~~~~---~~--~~~~~-~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~ 193 (202)
|+||++.+++.+++.|++.|++|.++. +. .+.-. .+|.|-| +. ++...+.....+||.+.+.
T Consensus 98 ~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~----~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 98 VLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GA----EEDERAPAALADRLAFHLD 165 (584)
T ss_pred EecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Ch----hcccCCCHHhHhheEEEEE
Confidence 999999999999999999999997642 22 23222 2333311 11 2223345556677776654
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=0.0002 Score=58.00 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 27 QELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.....+.+.+.+...+... ...+.|..++|+||+|+|||+++..+|..+..
T Consensus 43 ~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 43 AELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred HHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3455666666666654321 01234567889999999999999999988754
No 266
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.18 E-value=6.1e-06 Score=63.82 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|||||++|-+.|-.+..
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999877655
No 267
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=0.00012 Score=62.29 Aligned_cols=118 Identities=9% Similarity=0.068 Sum_probs=62.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc------------ccccCCCCchhHHHHHHhHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------------SRIHFPNENHVSLYRLQLTNWIISN 117 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (202)
++..++|.||+|+|||+++..+|...... .+....++..+. ....+. +... ... ...+.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv-p~~~--~~~--~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGM-PFYP--VKD--IKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCC-Ceee--hHH--HHHHHHH
Confidence 34568899999999999999999764221 111111111100 000000 0000 000 1223334
Q ss_pred hhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695 118 VTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF 177 (202)
Q Consensus 118 l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~ 177 (202)
+.....++|+||=+.+.+. ...+.|.++++... ..+...+++++.++.+.+.+.+..
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~---~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc---CCCCCeEEEEEeCCCCHHHHHHHH
Confidence 4445668999998877753 44555655554310 001146778888888876665543
No 268
>PF05729 NACHT: NACHT domain
Probab=98.17 E-value=1.6e-05 Score=58.71 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++|++|+|||++++.++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 4789999999999999999998766
No 269
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.16 E-value=8.5e-06 Score=68.35 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 270
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.15 E-value=3.7e-06 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++|+||+||||+.+.+.+.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 378999999999999999999974
No 271
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.13 E-value=8.6e-05 Score=63.87 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 29 LAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 29 ~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.+.+.+...+..... +..|..++|+|++|+|||+++..+|..+..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3455555555554432210 135778999999999999999999998765
No 272
>KOG0477|consensus
Probab=98.12 E-value=4.2e-06 Score=73.29 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=83.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCC----ceEEEEecCCCCcHHHHHHHHHHHhhcc---ccCcCccchh
Q psy1695 16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTK----ALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTSRFV 88 (202)
Q Consensus 16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~----pl~~ll~Gp~GtGKT~la~~la~~l~~~---~~~~~~~~~~ 88 (202)
+-..+-..|+|+..++..+.-++..........+. -.++||.|.||||||-+.+.+++...+. ++.|..+ +
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa--v 520 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA--V 520 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc--c
Confidence 34455568999999999999888875433221111 1259999999999999999888874331 1111111 1
Q ss_pred hhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCceEE
Q psy1695 89 HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQNTIF 162 (202)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~~~~ 162 (202)
.....-...+.... |. --.+++--+..+|-+|||+|+|+..-...+...||...+... .=...+.+
T Consensus 521 GLTa~v~KdPvtrE---WT-----LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctv 592 (854)
T KOG0477|consen 521 GLTAYVRKDPVTRE---WT-----LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTV 592 (854)
T ss_pred ceeEEEeeCCccce---ee-----eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhh
Confidence 11000000000000 10 001233344568899999999998777778888887544321 01245677
Q ss_pred EEeeCc
Q psy1695 163 LFLSNS 168 (202)
Q Consensus 163 Iltsn~ 168 (202)
|.++|.
T Consensus 593 IAAanP 598 (854)
T KOG0477|consen 593 IAAANP 598 (854)
T ss_pred heecCC
Confidence 888886
No 273
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=0.00015 Score=62.31 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhHhccCCC--CCceEEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhhc------------cc
Q psy1695 30 AISHICGALKNHFQNRYHN--TKALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFN------------SR 94 (202)
Q Consensus 30 a~~~l~~~l~~~~~~~~~~--~~pl~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~------------~~ 94 (202)
+.+.+.+.+...+...... ..+-.++|+||+|+|||+++..||..+. .. .+....++..+. ..
T Consensus 198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~ 275 (424)
T PRK05703 198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAK 275 (424)
T ss_pred HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHH
Confidence 4445555555544322100 1123689999999999999999988764 21 111111111110 00
Q ss_pred -ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 95 -IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 95 -~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+..+... .. ....+...+.. ...+++|+||...+.+. ...+.|..+++... .-....+++.++....
T Consensus 276 ~~~vp~~~-~~-~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~-----~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 276 IMGIPVEV-VY-DPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEELKALIEFSG-----EPIDVYLVLSATTKYE 345 (424)
T ss_pred HhCCceEc-cC-CHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC-----CCCeEEEEEECCCCHH
Confidence 0000000 00 00111222211 12468999999977665 34556777776210 1146677888888876
Q ss_pred HHHHHH
Q psy1695 172 EIMNTF 177 (202)
Q Consensus 172 ~i~~~~ 177 (202)
.+.+..
T Consensus 346 ~l~~~~ 351 (424)
T PRK05703 346 DLKDIY 351 (424)
T ss_pred HHHHHH
Confidence 665543
No 274
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.11 E-value=0.00022 Score=61.09 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|+|++|+||||++..+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667999999999999999999998754
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.11 E-value=1.5e-05 Score=76.60 Aligned_cols=122 Identities=13% Similarity=0.224 Sum_probs=75.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh----------cccccCCCCchhHHHHHHhHHHHHHhhhhCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------NSRIHFPNENHVSLYRLQLTNWIISNVTACD 122 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 122 (202)
++++-||+.+|||++...+|+.... .|++++ ...+...+.+..+ +. .+.+.++++++.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tgh--------kfVRINNHEHTdlqeYiGTyvTdd~G~ls-Fk---EGvLVeAlR~Gy 957 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGH--------KFVRINNHEHTDLQEYIGTYVTDDDGSLS-FK---EGVLVEALRRGY 957 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCc--------cEEEecCcccchHHHHhhceeecCCCcee-ee---hhHHHHHHhcCc
Confidence 4799999999999999999998432 233332 1222222333332 33 356777787765
Q ss_pred ceEEEEecCCCCChhHHHHHHHhcccCcc-----ccc--ccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDHHAV-----YNQ--ISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF 190 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~~~~-----~~~--~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~ 190 (202)
-||+||.+.++.+++.+|.++|+..+- ++- +...+-.+..|-|... ....+- -+.+++|.||+.
T Consensus 958 --WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg-~YgGRK-~LSrAFRNRFlE 1028 (4600)
T COG5271 958 --WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG-GYGGRK-GLSRAFRNRFLE 1028 (4600)
T ss_pred --EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc-cccchH-HHHHHHHhhhHh
Confidence 478999999999999999999998642 111 2444444555556321 111111 145667777653
No 276
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.09 E-value=1.2e-05 Score=64.98 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=56.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh----------CC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----------CD 122 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----------~~ 122 (202)
+++|+||+|||||.+++..-+.+.. . .+.. ..+.++...... .+...+...+.. +.
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~---~----~~~~---~~~~~s~~Tts~----~~q~~ie~~l~k~~~~~~gP~~~k 100 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDS---D----KYLV---ITINFSAQTTSN----QLQKIIESKLEKRRGRVYGPPGGK 100 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTT---C----CEEE---EEEES-TTHHHH----HHHHCCCTTECECTTEEEEEESSS
T ss_pred cEEEECCCCCchhHHHHhhhccCCc---c----ccce---eEeeccCCCCHH----HHHHHHhhcEEcCCCCCCCCCCCc
Confidence 6799999999999999887655332 1 1111 111111111111 111111111111 12
Q ss_pred ceEEEEecCCCCCh------hHHHHHHHhcccCccccc-----ccCCceEEEEeeCcC
Q psy1695 123 RAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG 169 (202)
Q Consensus 123 ~~viiiDEid~~~~------~~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~ 169 (202)
.-|++|||++.-.+ ...+.|.|+++.+-..+. ....++.+|.+.|.+
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC
Confidence 25889999965543 357889999998754432 356678888877764
No 277
>KOG0478|consensus
Probab=98.07 E-value=5.7e-06 Score=73.07 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=85.6
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc-CC---CCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccch
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNR-YH---NTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRF 87 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~-~~---~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~ 87 (202)
.+.|-..+-..|.|.+.+++.+.-++....... .. .+.-.++||+|.||||||.+.+.+++.+.+. +..|..+.-
T Consensus 420 y~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSa 499 (804)
T KOG0478|consen 420 YELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSA 499 (804)
T ss_pred HHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccch
Confidence 345556666788999999888877776531110 00 1112469999999999999999999885441 001111111
Q ss_pred hhhhcccccCCCCchhHHHHHHhHHHH--HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCc
Q psy1695 88 VHKFNSRIHFPNENHVSLYRLQLTNWI--ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQN 159 (202)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~ 159 (202)
+... .+...++.. ...+ .+++--+..++--|||+|||+....+.|.++||.-.+.-. .=..+
T Consensus 500 vGLT--ayVtrd~dt--------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR 569 (804)
T KOG0478|consen 500 VGLT--AYVTKDPDT--------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNAR 569 (804)
T ss_pred hcce--eeEEecCcc--------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence 1000 000000000 0000 1233334557888999999999999999999998654321 12245
Q ss_pred eEEEEeeCcC
Q psy1695 160 TIFLFLSNSG 169 (202)
Q Consensus 160 ~~~Iltsn~~ 169 (202)
+.++..+|..
T Consensus 570 ~SVLAaANP~ 579 (804)
T KOG0478|consen 570 CSVLAAANPI 579 (804)
T ss_pred ceeeeeeccc
Confidence 6677777743
No 278
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=7.1e-05 Score=57.57 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=22.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|+|+||+|||++|+-+|+.|..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999999866
No 279
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.06 E-value=4.9e-06 Score=62.77 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|.+..++.+...+. ... ...|..++++|++|+|||++.+.+.+.+..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~----~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ----SGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS----S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHH----cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999998888776 222 124557999999999999999988888655
No 280
>KOG1942|consensus
Probab=98.05 E-value=1.4e-05 Score=64.48 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+....++||..|.+..--.+.-...-.- .+.+++|.||||||||.+|-+++++|-.
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~Kkm---aGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKM---AGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhc---cCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 3446799999988775433332211110 2237999999999999999999999765
No 281
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00028 Score=57.97 Aligned_cols=114 Identities=14% Similarity=0.239 Sum_probs=64.0
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCc------cchh-------hhhc--------ccccCCCCchhHHHH
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT------SRFV-------HKFN--------SRIHFPNENHVSLYR 107 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~------~~~~-------~~~~--------~~~~~~~~~~~~~~~ 107 (202)
++|.+++|+|..|+||||..--||..+.. .|.. ..|- ..+. ..-.+.+|..+- |
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa-f- 211 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA-F- 211 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH-H-
Confidence 46889999999999999999999999876 4421 0010 0000 101233444332 3
Q ss_pred HHhHHHHHHhhhhCCceEEEEecCCCCChh--HHHHHH---HhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 108 LQLTNWIISNVTACDRAIFIFDEVDKFPKG--LLDVII---PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 108 ~~l~~~~~~~l~~~~~~viiiDEid~~~~~--~~~~L~---~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
+.+.. ......+++++|-+.+++.. ..+.|. +++.... ...-..+++++-+..+.+.+.+
T Consensus 212 ----DAi~~-Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~---~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 212 ----DAIQA-AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD---PDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred ----HHHHH-HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc---CCCCceEEEEEEcccChhHHHH
Confidence 23322 33445799999999999873 333333 3333210 0011335555567777665544
No 282
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.04 E-value=5.5e-06 Score=74.16 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCC-----CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695 14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNT-----KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 88 (202)
Q Consensus 14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~-----~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 88 (202)
..+-+.+-..+.|.+.+++.+.-++-....... ++ .=.++||.|.||||||.+.+.+++.+.. . -|.
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~-~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr---~----vyt 349 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKKNL-PDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR---G----VYT 349 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcccC-CCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc---e----EEE
Confidence 444556667899999988888776665322111 11 1147999999999999999999887533 1 111
Q ss_pred hhhcccccCC------CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc
Q psy1695 89 HKFNSRIHFP------NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 152 (202)
Q Consensus 89 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~ 152 (202)
..-.+.-.+- ++. .+.|. --.+++--+..+|..|||+|+|+......|...||...++
T Consensus 350 sgkgss~~GLTAav~rd~~-tge~~-----LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIs 413 (682)
T COG1241 350 SGKGSSAAGLTAAVVRDKV-TGEWV-----LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTIS 413 (682)
T ss_pred ccccccccCceeEEEEccC-CCeEE-----EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEee
Confidence 1101000000 000 00000 0012333445689999999999999999999999987643
No 283
>PRK10867 signal recognition particle protein; Provisional
Probab=98.03 E-value=0.00054 Score=58.93 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 30 AISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 30 a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++.+.+.+...+.... ....|..++|+||+|+|||+++..+|..+..
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred HHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 44445555555443211 0234667999999999999999999988755
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.02 E-value=3.3e-05 Score=58.50 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=20.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+++.||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999988777543
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.02 E-value=7.2e-06 Score=64.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
.|..++|+|+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 455699999999999999999864
No 286
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.01 E-value=5.5e-06 Score=74.17 Aligned_cols=50 Identities=34% Similarity=0.439 Sum_probs=41.2
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 18 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 18 ~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+-++++||+++++.+..++... . .++|+||||+|||++++++++.+.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~------~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----R------HVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----C------eEEEECCCCCcHHHHHHHHHHHcCh
Confidence 455678999999999887766532 1 6899999999999999999998754
No 287
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.01 E-value=7.5e-05 Score=56.00 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=26.8
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|.++.|+|.+|+|||++|.++.+.|+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 36778999999999999999999999988
No 288
>KOG0735|consensus
Probab=98.01 E-value=3.6e-05 Score=68.58 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
++++.||+|+|||.|++++..++.. . ....+..+.++.+.+.. ....+..+...+.+.+...| +||++|+.|
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k---~-~~~hv~~v~Cs~l~~~~---~e~iQk~l~~vfse~~~~~P-SiIvLDdld 504 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSK---D-LIAHVEIVSCSTLDGSS---LEKIQKFLNNVFSEALWYAP-SIIVLDDLD 504 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhcc---c-cceEEEEEechhccchh---HHHHHHHHHHHHHHHHhhCC-cEEEEcchh
Confidence 6999999999999999999999653 2 11122233455544332 22233333444455555444 799999997
Q ss_pred CC
Q psy1695 133 KF 134 (202)
Q Consensus 133 ~~ 134 (202)
-+
T Consensus 505 ~l 506 (952)
T KOG0735|consen 505 CL 506 (952)
T ss_pred hh
Confidence 65
No 289
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.00 E-value=0.00014 Score=58.79 Aligned_cols=109 Identities=11% Similarity=0.122 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 103 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
++=-++|++.+.+..+-. ..+. -+.+|.|..|+||+++++..|.. .. -.+..+... ..-..
T Consensus 10 lVlf~~ai~hi~ri~RvL-~~~~-----Gh~LLvG~~GsGr~sl~rLaa~i-~~-------~~~~~i~~~-----~~y~~ 70 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL-SQPR-----GHALLVGVGGSGRQSLARLAAFI-CG-------YEVFQIEIT-----KGYSI 70 (268)
T ss_dssp ----HHHHHHHHHHHHHH-CSTT-----EEEEEECTTTSCHHHHHHHHHHH-TT-------EEEE-TTTS-----TTTHH
T ss_pred eeeHHHHHHHHHHHHHHH-cCCC-----CCeEEecCCCccHHHHHHHHHHH-hc-------cceEEEEee-----CCcCH
Confidence 444678888876555443 3221 25899999999999999865554 22 122222211 11112
Q ss_pred HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
..+.++++..+..+-......+++++|.+-..+...+.+..+|..|.+
T Consensus 71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei 118 (268)
T PF12780_consen 71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI 118 (268)
T ss_dssp HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC
Confidence 335555555554443344557888999988888888888888888764
No 290
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.98 E-value=4e-05 Score=64.62 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
|..+.+.+.+++.. ..|..+++.||.|||||++.++|...+..
T Consensus 6 Q~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 66777777666653 15667899999999999999999988644
No 291
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=0.00011 Score=57.98 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=48.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
+-.+.||+|||||++++.+|+.+-. .++..+++. .-. +. .+.+-+.+....+ .-+.|||++
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~--------~~~vfnc~~-----~~~---~~-~l~ril~G~~~~G--aW~cfdefn 94 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGR--------FVVVFNCSE-----QMD---YQ-SLSRILKGLAQSG--AWLCFDEFN 94 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT----------EEEEETTS-----SS----HH-HHHHHHHHHHHHT---EEEEETCC
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCC--------eEEEecccc-----ccc---HH-HHHHHHHHHhhcC--chhhhhhhh
Confidence 5678999999999999999998643 233333322 111 11 2233444444443 467899999
Q ss_pred CCChhHHHHHHHhcc
Q psy1695 133 KFPKGLLDVIIPFID 147 (202)
Q Consensus 133 ~~~~~~~~~L~~~le 147 (202)
+++.+++..+.+.+.
T Consensus 95 rl~~~vLS~i~~~i~ 109 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQ 109 (231)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 999988777665554
No 292
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=0.00043 Score=57.27 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 28 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 28 ~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+.+.+.+.+...+.... ....|..++|+||+|+|||+++..+|..+..
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3455555555555543111 0124567899999999999999999998765
No 293
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=6.9e-06 Score=57.85 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||||+||||+|+.||+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 368999999999999999999853
No 294
>KOG0480|consensus
Probab=97.94 E-value=4.1e-05 Score=67.37 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce----EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL----AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 88 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl----~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 88 (202)
...|-..|-..|+|++.++..+.-++.....-....+.|+ +++++|.||+|||-+.++....+.+ . -|+
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR---~----vYt 408 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR---S----VYT 408 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc---c----eEe
Confidence 3455566667899999999999877776432211112333 6999999999999999988776433 1 111
Q ss_pred hhhc---ccccCC--CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 89 HKFN---SRIHFP--NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 89 ~~~~---~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
.-.. +.+..+ .....+.|.- -.+++.-+..+|--|||+|||+..-+.+|...||...+
T Consensus 409 sGkaSSaAGLTaaVvkD~esgdf~i-----EAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 409 SGKASSAAGLTAAVVKDEESGDFTI-----EAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTI 471 (764)
T ss_pred cCcccccccceEEEEecCCCCceee-----ecCcEEEccCceEEechhcccChHhHHHHHHHHHhhee
Confidence 1000 001000 0000111100 01234444567888999999999889999999998653
No 295
>KOG0736|consensus
Probab=97.94 E-value=8.9e-05 Score=66.65 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHHhHhccC-CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 24 VHGQELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~-~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
..+++..+..+.+.+.....-.. ....-.++|++|+||||||++.+++|+++.- .++.+++..+.....+.
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~--------h~~evdc~el~~~s~~~ 474 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL--------HLLEVDCYELVAESASH 474 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC--------ceEeccHHHHhhcccch
Confidence 45566655555555443221100 0012236999999999999999999999644 34555554444333322
Q ss_pred hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC---hH
Q psy1695 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG---GT 171 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~---~~ 171 (202)
.. .-...+....+.++..|+++-..|-+. ...+..+...+.... -..+...++||.+++.. +.
T Consensus 475 ~e----tkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~--~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 475 TE----TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNED--FKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred hH----HHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhccc--ccCCCCceEEEEeccccccCCH
Confidence 21 113344445566677778776664442 123344444443100 01255678888888764 23
Q ss_pred HHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695 172 EIMNTFLELRKSECIEFIFQCQPLKVYL 199 (202)
Q Consensus 172 ~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 199 (202)
.+...++.....+-....-|++.|+-|+
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.93 E-value=0.00017 Score=54.32 Aligned_cols=54 Identities=4% Similarity=0.150 Sum_probs=38.0
Q ss_pred HHHHhhhhCCceEEEEecCC------CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 113 WIISNVTACDRAIFIFDEVD------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 113 ~~~~~l~~~~~~viiiDEid------~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
...+.+....+++||+||+. .++. +.+.++|+..+ .+.-+|+|....++.+.+.
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp-------~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGYLDV---EEVVEALQERP-------GHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCC-------CCCEEEEECCCCCHHHHHh
Confidence 44555666788999999995 4443 34556667666 7788999998777665543
No 297
>KOG1514|consensus
Probab=97.93 E-value=5.8e-05 Score=67.12 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=87.5
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc--chhhhhcccccCC
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS--RFVHKFNSRIHFP 98 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~~~~~ 98 (202)
.+.+.+.+.-...|...+..++.... ....+.+.|-||||||.+++.+-+.|....+.+... .|++++...+..+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~ 471 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQG---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASP 471 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCC---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCH
Confidence 35688889999999888888876522 233688999999999999999999887521122122 2444443333222
Q ss_pred CCchhHHHHH---------HhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 99 NENHVSLYRL---------QLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 99 ~~~~~~~~~~---------~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
..-|...|.. .-...+...+. ..+..||+|||.|.+-..-|+.|..+++-+.. ..+..++|.+
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----~~sKLvvi~I 547 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL----KNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC----CCCceEEEEe
Confidence 2112111111 00111111222 11238999999999988888999888886532 3367788888
Q ss_pred eCcC
Q psy1695 166 SNSG 169 (202)
Q Consensus 166 sn~~ 169 (202)
+|.-
T Consensus 548 aNTm 551 (767)
T KOG1514|consen 548 ANTM 551 (767)
T ss_pred cccc
Confidence 8765
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.93 E-value=0.001 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+|..++|+|++|+|||+++..+|..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 477899999999999999999999865
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.92 E-value=6.1e-05 Score=55.08 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD 129 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD 129 (202)
.+.+.||+|+|||++.++++..+... .| . +..+. ..+... ..+.... +-.+..++... .+++++|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G---~-i~~~~~~~i~~~~~---lS~G~~~--rv~laral~~~-p~illlD 95 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPD--EG---I-VTWGSTVKIGYFEQ---LSGGEKM--RLALAKLLLEN-PNLLLLD 95 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC--ce---E-EEECCeEEEEEEcc---CCHHHHH--HHHHHHHHhcC-CCEEEEe
Confidence 58899999999999999998875431 11 1 11110 001111 1111111 22333344433 4799999
Q ss_pred cC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 130 EV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 130 Ei-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
|- ..++......+.+++.+- +..+|++|...
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~---------~~til~~th~~ 127 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY---------PGTVILVSHDR 127 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc---------CCEEEEEECCH
Confidence 99 466777788888887652 23556666543
No 300
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.89 E-value=8.8e-05 Score=57.20 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||+++.+++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999888754
No 301
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.88 E-value=0.00014 Score=55.53 Aligned_cols=114 Identities=9% Similarity=0.056 Sum_probs=64.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh---------------------h-cc-cccCCCCchhH--HHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------------------F-NS-RIHFPNENHVS--LYR 107 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~---------------------~-~~-~~~~~~~~~~~--~~~ 107 (202)
.+.++|++|.|||++|..+|-.... .|....++.+ . +. .+.+....... ...
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 5889999999999999998887655 3321110000 0 00 00000000000 011
Q ss_pred HHhHHHHHHhhhhCCceEEEEecCCCCCh-h--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 108 LQLTNWIISNVTACDRAIFIFDEVDKFPK-G--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 108 ~~l~~~~~~~l~~~~~~viiiDEid~~~~-~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
........+.+....+++||+||+..+-. . -.+.+..+|+..+ .++-+|+|-...++.+.+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-------~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-------GMQHVVITGRGAPRELIEA 165 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence 11223345556677889999999944322 1 1344666666665 6788999998777665443
No 302
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.87 E-value=4.3e-05 Score=56.61 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=25.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|.+++|+|.+|+|||++|+++.+.|..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999999987
No 303
>PRK14527 adenylate kinase; Provisional
Probab=97.86 E-value=0.00054 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..+++.||||+|||++|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55579999999999999999999875
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00017 Score=60.72 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+-.++|+||+|+|||+++..||..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999998753
No 305
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.84 E-value=4.2e-05 Score=63.42 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=43.4
Q ss_pred HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.++|-+++++.+.+.++....+.. . +...++|.||+|+|||++++.|.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~-~-~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLE-E-RKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccC-c-cceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999988665432 2 23368999999999999999998876
No 306
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.81 E-value=0.00025 Score=68.16 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=34.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++|.+..++.+...+... ...+..+.++|++|+||||+|+++++.+..
T Consensus 185 ~~vG~~~~l~~l~~lL~l~------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLE------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccchHHHHHHHHHHHccc------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4677777776665444311 113336889999999999999999887644
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.81 E-value=0.00012 Score=55.51 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=48.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc--ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN--SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE 130 (202)
.+.+.||+|+|||++.+.++..+.+. .| . +.++. ..+........+.... .-.+..++... .+++++||
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G---~-i~~~g~~i~~~~q~~~LSgGq~q--rv~laral~~~-p~lllLDE 97 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN--GD---N-DEWDGITPVYKPQYIDLSGGELQ--RVAIAAALLRN-ATFYLFDE 97 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC--Cc---E-EEECCEEEEEEcccCCCCHHHHH--HHHHHHHHhcC-CCEEEEEC
Confidence 58899999999999999999876441 11 1 11110 0111111112221111 22233334433 47999999
Q ss_pred C-CCCChhHHHHHHHhccc
Q psy1695 131 V-DKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 131 i-d~~~~~~~~~L~~~le~ 148 (202)
- ..+++.....+.+++.+
T Consensus 98 Pts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 8 45666666666666654
No 308
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.81 E-value=0.00026 Score=55.21 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..++|+||.|+|||++.+.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999843
No 309
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.77 E-value=0.0001 Score=67.59 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=46.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh------hhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF 126 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vi 126 (202)
..++.|++|||||++++++...+.. .+.....+. ..+..-.+.....+..+. ...-...-...+.++|
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~---~~~~~~~~~~~~~~ll 443 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEA---AGYRVIGAALSGKAAEGLQAESGIESRTLASLE---YAWANGRDLLSDKDVL 443 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHhccCCceeeHHHHH---hhhccCcccCCCCcEE
Confidence 5789999999999999999877544 221100000 000000000000111000 0000000011245899
Q ss_pred EEecCCCCChhHHHHHHHhcc
Q psy1695 127 IFDEVDKFPKGLLDVIIPFID 147 (202)
Q Consensus 127 iiDEid~~~~~~~~~L~~~le 147 (202)
|+||+..++......|+....
T Consensus 444 IvDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 444 VIDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred EEECcccCCHHHHHHHHHHHH
Confidence 999999999887777776544
No 310
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.77 E-value=2.7e-05 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|..++|+|+||+|||++|+.+|+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999996
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00092 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+-.++|+||+|+|||+++..+|..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999988654
No 312
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.0011 Score=58.15 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
-.+.|+||+|+|||+++..|+..+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999887543
No 313
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.75 E-value=0.00079 Score=55.49 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 35 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 35 ~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+...+.++. ...|.++.+.|+=|+|||++.+.+.+.+..
T Consensus 5 a~~la~~I~~~~-~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 5 AKALAEIIKNPD-SDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred HHHHHHHHhccC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344444444432 247888999999999999999999998766
No 314
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.74 E-value=0.00026 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
-.++++|+||+|||+++..++...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 368999999999999999997664
No 315
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.00019 Score=65.59 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=49.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh--------hcccccCCCCchhHHHHHHhHHHH-HHhhh-hCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSRIHFPNENHVSLYRLQLTNWI-ISNVT-ACD 122 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~-~~~ 122 (202)
.+++.|+||||||++++++.+.+.. .+....++-. .+....+.....+..+-....... ..... ..+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence 5889999999999999999887654 2100000000 000000000000000000000000 00000 123
Q ss_pred ceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
.++||+||+..++......|++.+..+
T Consensus 417 ~~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 417 CDLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred CCEEEEeccccCCHHHHHHHHHhCCCC
Confidence 589999999999999888888877654
No 316
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.72 E-value=9.7e-05 Score=53.27 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 29 LAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 29 ~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+....+.+.+...+... ..++|.|+.|+|||++++.+++.+..
T Consensus 6 ~~t~~l~~~l~~~l~~~------~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFG------TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCC------CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44455555555554322 26899999999999999999999644
No 317
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.72 E-value=0.00076 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++|+|+||+|||++|+.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5889999999999999999984
No 318
>PRK06696 uridine kinase; Validated
Probab=97.72 E-value=8.1e-05 Score=58.42 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.9
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..|+.+.+.|++|+||||+|+.|++.+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36778999999999999999999999854
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.69 E-value=0.00013 Score=61.69 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.|+||+|||+++..++..+..
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~ 108 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK 108 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887644
No 320
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.69 E-value=8.1e-05 Score=59.46 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
-.+++||+|+|||++++.+++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 4899999999999999999988644
No 321
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.68 E-value=9.3e-05 Score=58.05 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=43.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK 133 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~ 133 (202)
+++.|+||+|||++.+.+.... .. -....+.................. .. .............+.++|||+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~-~v---~s~~~~~~~~~~~~~liiDE~~~ 73 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LV--VTVISPTIELYTEWLPDPPSKSVR-TV---DSFLKALVKPKSYDTLIIDEAQL 73 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cc--cccccccceeccccccccCCcccc-EE---eEhhhcccccCcCCEEEEecccc
Confidence 3689999999999999988872 00 000000000000000000000000 00 01111111112468999999999
Q ss_pred CChhHHHHHHHhcc
Q psy1695 134 FPKGLLDVIIPFID 147 (202)
Q Consensus 134 ~~~~~~~~L~~~le 147 (202)
+++..+..|.....
T Consensus 74 ~~~g~l~~l~~~~~ 87 (234)
T PF01443_consen 74 LPPGYLLLLLSLSP 87 (234)
T ss_pred CChHHHHHHHhhcc
Confidence 99987777665544
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.67 E-value=0.00032 Score=52.34 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=54.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC--------CCCc----hhHHHHHHhHHHHHHhhhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF--------PNEN----HVSLYRLQLTNWIISNVTA 120 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~l~~~~~~~l~~ 120 (202)
.+.+.||+|+|||++.+.++..+.+. .| . +.++...+.. ...+ ..+.... .-.+..++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~--~G---~-v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~q--rl~laral~~ 99 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPD--SG---E-ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQ--MVEIARALAR 99 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--Ce---E-EEECCEECCcCCHHHHHhcCeEEEEecCHHHHH--HHHHHHHHhc
Confidence 58899999999999999998875431 11 0 0000000000 0000 1111111 1223333433
Q ss_pred CCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 121 CDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 121 ~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
. .+++++||- ..+++.....+.+++.+-. .+...+|++|...
T Consensus 100 ~-p~illlDEP~~~LD~~~~~~l~~~l~~~~------~~~~tiii~sh~~ 142 (163)
T cd03216 100 N-ARLLILDEPTAALTPAEVERLFKVIRRLR------AQGVAVIFISHRL 142 (163)
T ss_pred C-CCEEEEECCCcCCCHHHHHHHHHHHHHHH------HCCCEEEEEeCCH
Confidence 3 479999999 4567777777777776531 0345566666543
No 323
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.67 E-value=0.00032 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+.++||||+|||+++..++.....
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999887644
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.66 E-value=0.001 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||||+|||+++..++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998755
No 325
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.66 E-value=0.00027 Score=54.55 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=63.6
Q ss_pred HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH
Q psy1695 32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT 111 (202)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (202)
..+..++.+.. .|. -+...+++|.|+-|+|||++.+.|+...+. .. .. ...... . .
T Consensus 35 ~wl~~~Var~~-~pg-~k~d~~lvl~G~QG~GKStf~~~L~~~~~~---d~---------~~---~~~~kd---~----~ 90 (198)
T PF05272_consen 35 KWLVGAVARAY-EPG-CKNDTVLVLVGKQGIGKSTFFRKLGPEYFS---DS---------IN---DFDDKD---F----L 90 (198)
T ss_pred HHHHHHHHHHh-CCC-CcCceeeeEecCCcccHHHHHHHHhHHhcc---Cc---------cc---cCCCcH---H----H
Confidence 33444444433 332 223447899999999999999998655333 10 00 000000 0 1
Q ss_pred HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc------c--ccCCceEEEEeeCcC
Q psy1695 112 NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN------Q--ISFQNTIFLFLSNSG 169 (202)
Q Consensus 112 ~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~------~--~~~~~~~~Iltsn~~ 169 (202)
..+.+ .-++-+||++.+.....+.|..++......- . .--++++||.|||..
T Consensus 91 ~~l~~------~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 91 EQLQG------KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HHHHH------hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 11111 1378899999999888888988887643221 1 134677888999863
No 326
>KOG2227|consensus
Probab=97.66 E-value=0.00016 Score=61.72 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=80.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
..+.|.+.-+..+...+..++... .+.++.+.|-||||||.+...+-..+.. .+.....+.+++..+..+..-
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~----t~gSlYVsG~PGtgkt~~l~rvl~~~~~---~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELN----TSGSLYVSGQPGTGKTALLSRVLDSLSK---SSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcc----cCcceEeeCCCCcchHHHHHHHHHhhhh---hcccceeEEEeeccccchHHH
Confidence 458899999999988888887654 4557899999999999988766555433 211111122222221111000
Q ss_pred hhH---H---------HHHHhHHHHHHhhhhCC-ceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 102 HVS---L---------YRLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 102 ~~~---~---------~~~~l~~~~~~~l~~~~-~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
+.+ . ...+....+........ --|+|+||+|.+-..-+..|..+++-+.+ ..++.+.|.++|.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l----p~sr~iLiGiANs 298 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL----PNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC----Ccceeeeeeehhh
Confidence 000 0 01112233333333333 36788999999988777777777765432 2356666676665
Q ss_pred C
Q psy1695 169 G 169 (202)
Q Consensus 169 ~ 169 (202)
-
T Consensus 299 l 299 (529)
T KOG2227|consen 299 L 299 (529)
T ss_pred h
Confidence 4
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.65 E-value=4.3e-05 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=20.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999995
No 328
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=4.3e-05 Score=57.35 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
-++++||+|+||||+|+.|++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999999644
No 329
>PRK06762 hypothetical protein; Provisional
Probab=97.64 E-value=5.6e-05 Score=56.38 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
|..++++|+||+|||++|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999986
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.64 E-value=0.00064 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||+|+|||+++..++..+.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999866655543
No 331
>PF13245 AAA_19: Part of AAA domain
Probab=97.62 E-value=0.0001 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=17.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||||||||+++..++.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467799999999965555544444
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.61 E-value=0.00044 Score=57.84 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||++.+++...+..
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5899999999999999999988653
No 333
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.61 E-value=0.00036 Score=57.64 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.++||||+|||++|..++.....
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~ 81 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQK 81 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999887766543
No 334
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00032 Score=54.99 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-cccccC----CCCchhHHHHHH-----h-HHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHF----PNENHVSLYRLQ-----L-TNWIISNV 118 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~-----l-~~~~~~~l 118 (202)
..+..++.||||||||++.|-+|+.+...++.-......-++ .+.+.+ .+.-..+ -+.+ . ..-+..++
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g-~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRG-RRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhh-hhhhhcccchHHHHHHHHH
Confidence 345689999999999999999999975421110111111111 111111 0000000 0000 0 11233455
Q ss_pred hhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 119 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 119 ~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
++-...|+|+|||..... ..+++..++.|
T Consensus 215 rsm~PEViIvDEIGt~~d--~~A~~ta~~~G 243 (308)
T COG3854 215 RSMSPEVIIVDEIGTEED--ALAILTALHAG 243 (308)
T ss_pred HhcCCcEEEEeccccHHH--HHHHHHHHhcC
Confidence 555668999999988764 34455666665
No 335
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.60 E-value=0.00016 Score=58.98 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.|+.+++.|++|+|||++|..||+.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999999999743
No 336
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00029 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
-+.+.||+||||||+-+.+|-...+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999988655
No 337
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.59 E-value=0.0012 Score=53.94 Aligned_cols=115 Identities=13% Similarity=0.201 Sum_probs=69.8
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 91 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 91 (202)
.++...+.+.+.+.|.....-.+..++...+...- ...+..+-|+|++++|||+++++.+.. +. .+ .
T Consensus 155 tle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-~~~~~~~hl~G~Ss~GKTt~~~~a~Sv-~G---~p--~------ 221 (286)
T PF06048_consen 155 TLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-GVEGFGFHLYGQSSSGKTTALQLAASV-WG---NP--D------ 221 (286)
T ss_pred CHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-CCCceEEEEEeCCCCCHHHHHHHhhhh-Cc---Cc--h------
Confidence 56777787777788877766666555555433221 224557899999999999999887765 43 11 1
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
.+..+.... ...+.........-.++|||+..+.+.-...+.-.|.+|
T Consensus 222 --~l~~sw~~T--------~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG 269 (286)
T PF06048_consen 222 --GLIRSWNST--------DNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANG 269 (286)
T ss_pred --hhhhcchhh--------HHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCC
Confidence 111111111 112222333344567889999999887666665555554
No 338
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.59 E-value=7.3e-05 Score=56.35 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=25.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|.|++|+|||++|+.+++.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667999999999999999999999764
No 339
>PRK05439 pantothenate kinase; Provisional
Probab=97.59 E-value=0.00019 Score=59.00 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|..+.+.|+||+||||+|+.|+..+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788899999999999999999999764
No 340
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.00047 Score=64.72 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 122 DRAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 122 ~~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
+.+|||+||+..++......|++....
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhh
Confidence 347999999999999888888776543
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.59 E-value=0.0005 Score=51.40 Aligned_cols=101 Identities=9% Similarity=0.059 Sum_probs=54.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC---cc----chhhhhccccc---------C-CCCchhHHHHHHhHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TS----RFVHKFNSRIH---------F-PNENHVSLYRLQLTNWII 115 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---~~----~~~~~~~~~~~---------~-~~~~~~~~~~~~l~~~~~ 115 (202)
.+.+.||+|+|||++++.++..+... .|. .. .++.... .+. . ......+.... +-.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~~-~~~~~tv~~nl~~~~~~~LS~G~~~--rv~la 103 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQRP-YLPLGTLREQLIYPWDDVLSGGEQQ--RLAFA 103 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCCC-ccccccHHHHhhccCCCCCCHHHHH--HHHHH
Confidence 58899999999999999999875432 110 00 0000000 000 0 00111111111 11233
Q ss_pred HhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 116 SNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 116 ~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
.++.. +.+++++||- ..+++.....+.+++.+. ...+|++|..
T Consensus 104 ral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~---------~~tiiivsh~ 147 (166)
T cd03223 104 RLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL---------GITVISVGHR 147 (166)
T ss_pred HHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh---------CCEEEEEeCC
Confidence 33333 3479999999 466778888888888762 2455566654
No 342
>PRK08233 hypothetical protein; Provisional
Probab=97.59 E-value=7.1e-05 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+.+.|+||+||||+|+.|+..+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345788999999999999999999864
No 343
>PRK13695 putative NTPase; Provisional
Probab=97.58 E-value=0.00043 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
-++|+|++|+|||+++..++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999988764
No 344
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.58 E-value=0.00019 Score=58.54 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|..+.+.||+|+||||+|+.+...+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788899999999999999999988765
No 345
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.58 E-value=0.00047 Score=52.07 Aligned_cols=106 Identities=10% Similarity=0.104 Sum_probs=56.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC----ccchh------hhhcccccCCCCc----hhHH-------HHHHhH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----TSRFV------HKFNSRIHFPNEN----HVSL-------YRLQLT 111 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----~~~~~------~~~~~~~~~~~~~----~~~~-------~~~~l~ 111 (202)
.+.+.||+|+|||++++.++..+... .|. ..+.. .... .+.+..+. .+.. ..+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDLEKALSSLI-SVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHHHHHHHHHhhE-EEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 58899999999999999999875442 110 00100 0000 11111110 0000 001101
Q ss_pred HHHHHhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 112 NWIISNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 112 ~~~~~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
-.+..++.. +.+++++||. ..+++...+.+++++.+-. ++..+|++|...
T Consensus 107 v~laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-------~~~tii~~sh~~ 157 (178)
T cd03247 107 LALARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVL-------KDKTLIWITHHL 157 (178)
T ss_pred HHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHc-------CCCEEEEEecCH
Confidence 123333333 3489999999 5667777888888877532 345566666544
No 346
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.58 E-value=8.2e-05 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=18.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 47899999999998887777776
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=8.2e-05 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999986
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00057 Score=51.28 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=57.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC----ccchhhh------hcccccCCCCc----hhHH----HHHHhHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----TSRFVHK------FNSRIHFPNEN----HVSL----YRLQLTNWI 114 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----~~~~~~~------~~~~~~~~~~~----~~~~----~~~~l~~~~ 114 (202)
.+.+.||+|+|||++.+.++..+... .|. ..+.... ....+.+..+. .+.. ..+...-.+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 58899999999999999999886442 110 0010000 00001111111 1100 011001122
Q ss_pred HHhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 115 ISNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 115 ~~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
..++.. +.+++++||- .-+++.....+.+++.+-. .+..+|++|....
T Consensus 108 a~al~~-~p~llllDEP~~gLD~~~~~~l~~~l~~~~-------~~~tii~~sh~~~ 156 (171)
T cd03228 108 ARALLR-DPPILILDEATSALDPETEALILEALRALA-------KGKTVIVIAHRLS 156 (171)
T ss_pred HHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHhc-------CCCEEEEEecCHH
Confidence 333333 3479999998 5667777778888777532 2356677776543
No 349
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.57 E-value=0.00024 Score=56.02 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+.+.+..+... ..+|..+.+.||+|+|||++++.++..+..
T Consensus 17 ~~l~~~~~~~~~~---~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 17 KPLLRRLAALQAE---PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHHHhc---CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3334444444433 236778999999999999999999999765
No 350
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.56 E-value=9.4e-05 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+|..+.+.|++|+||||+++.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999987
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00054 Score=50.59 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=55.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC---cc-chhh---hhc-ccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TS-RFVH---KFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRA 124 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---~~-~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 124 (202)
.+.+.||+|+|||++.++++..+... .|. .. .... ... ........ ..+.... .-.+..++... .+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~~~~~~~~~~~~~~~i~~~~q-lS~G~~~--r~~l~~~l~~~-~~ 100 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKDIAKLPLEELRRRIGYVPQ-LSGGQRQ--RVALARALLLN-PD 100 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEcccCCHHHHHhceEEEee-CCHHHHH--HHHHHHHHhcC-CC
Confidence 58899999999999999998875431 110 00 0000 000 00000000 1111111 22333334333 47
Q ss_pred EEEEecCC-CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 125 IFIFDEVD-KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 125 viiiDEid-~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
++++||.. .++......+.+++..-. . .+..+|++|...
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~-----~-~~~tii~~sh~~ 140 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELA-----E-EGRTVIIVTHDP 140 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHH-----H-CCCEEEEEeCCH
Confidence 99999994 667777777777776532 0 234566666553
No 352
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=0.0024 Score=49.07 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=25.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..+.|+|++|+|||++|+.++..+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6768999999999999999999998865
No 353
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00071 Score=53.67 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=55.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCc--C------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCc-
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDK--G------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR- 123 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~- 123 (202)
.+.++|+.|+|||.+.|++...+....... . ...+....+..+...+...+...-+++...+.+.+....+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999997777654411000 0 0111111222222222222221223334556666666666
Q ss_pred eEEEEecCCCCChhHHHHHHHhcc
Q psy1695 124 AIFIFDEVDKFPKGLLDVIIPFID 147 (202)
Q Consensus 124 ~viiiDEid~~~~~~~~~L~~~le 147 (202)
.++++||++.+..++...|.-+.+
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~n 156 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTN 156 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHh
Confidence 788999999999988777665543
No 354
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.55 E-value=0.00022 Score=61.72 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++|+||+|||+++..++..+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988764
No 355
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.00038 Score=59.39 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=47.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
..++.||-+||||++.+.+.+.+.. ..+.++..+........ .+ ......+.... ....++||||+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~--------~~iy~~~~d~~~~~~~l----~d-~~~~~~~~~~~-~~~yifLDEIq 104 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE--------EIIYINFDDLRLDRIEL----LD-LLRAYIELKER-EKSYIFLDEIQ 104 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc--------ceEEEEecchhcchhhH----HH-HHHHHHHhhcc-CCceEEEeccc
Confidence 7899999999999999887777433 12222222211111000 00 01111111111 34689999999
Q ss_pred CCChhHHHHHHHhcccCc
Q psy1695 133 KFPKGLLDVIIPFIDHHA 150 (202)
Q Consensus 133 ~~~~~~~~~L~~~le~~~ 150 (202)
..+. ....|..+.+.+.
T Consensus 105 ~v~~-W~~~lk~l~d~~~ 121 (398)
T COG1373 105 NVPD-WERALKYLYDRGN 121 (398)
T ss_pred Cchh-HHHHHHHHHcccc
Confidence 9885 6677777888764
No 356
>PRK03839 putative kinase; Provisional
Probab=97.54 E-value=7.5e-05 Score=56.49 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.|+||+||||+++.+|+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999863
No 357
>PF13479 AAA_24: AAA domain
Probab=97.54 E-value=7.5e-05 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+|+-++++||||+|||++|..+-+.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~~k~ 26 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASLPKP 26 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhCCCe
Confidence 5667999999999999999887443
No 358
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.54 E-value=0.0022 Score=53.31 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|+.+.+.|+||+|||+++..+...+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999998765
No 359
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.53 E-value=0.0009 Score=50.63 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+|||++.+.++..+.+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999887543
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.0025 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..++|+||+|+||||++..||..+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 344699999999999999999998764
No 361
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.53 E-value=0.0023 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+|..+++.|+||+|||+++..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 578889999999999999999998875
No 362
>PRK06547 hypothetical protein; Provisional
Probab=97.53 E-value=0.00011 Score=55.35 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..+++.|++|+|||++|+.+++.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56678899999999999999999984
No 363
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.52 E-value=0.0021 Score=54.37 Aligned_cols=51 Identities=6% Similarity=0.123 Sum_probs=32.7
Q ss_pred ceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 123 RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 123 ~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
+++|++|-+.+-+.+ ....|..+++... .-+..+++.+|.-.+.+.+.+-+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~------~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSH------SIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccc------cceEEEEEecCcchHHHHHHHHH
Confidence 389999999887654 3445666655431 14556677777777766665543
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.51 E-value=0.00053 Score=55.81 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 28 ELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 28 ~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+.+.+.+.+...+..... ...+..++|+||+|+|||+++..+|..+..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44556666666665532110 124557899999999999999999988654
No 365
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.51 E-value=0.00097 Score=59.59 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 122 DRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 122 ~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
+.++||+||+..++......|++.+..+
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 3489999999999999888888877653
No 366
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.51 E-value=0.00059 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
....+++||||+|||+++..++.....
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK 49 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 336899999999999999999987544
No 367
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.51 E-value=0.00092 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||.|+|||++.+.++...
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 58999999999999999999543
No 368
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.51 E-value=0.00091 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||||+|||+++..++...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887764
No 369
>KOG0922|consensus
Probab=97.51 E-value=0.0009 Score=59.29 Aligned_cols=51 Identities=10% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCceEEEEecCCCCCh--hHH-HHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 121 CDRAIFIFDEVDKFPK--GLL-DVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 121 ~~~~viiiDEid~~~~--~~~-~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
..++||||||++.=+- +++ -.|.+++.+.. .=.++|+.+++..+.+.+++.
T Consensus 162 skYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-------~LklIimSATlda~kfS~yF~ 215 (674)
T KOG0922|consen 162 SKYSVIILDEAHERSLHTDILLGLLKKILKKRP-------DLKLIIMSATLDAEKFSEYFN 215 (674)
T ss_pred ccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-------CceEEEEeeeecHHHHHHHhc
Confidence 3569999999965432 333 33334444432 224555666666666666544
No 370
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.51 E-value=8.5e-05 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++++||||+|||++|+.||+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999985
No 371
>PTZ00202 tuzin; Provisional
Probab=97.50 E-value=0.00072 Score=58.02 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=36.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.+.....+...+...- ...|....++||+|+|||++++.++..+
T Consensus 263 ~FVGReaEla~Lr~VL~~~d-----~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLD-----TAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 57888888888877665421 1234468899999999999999998775
No 372
>PLN02200 adenylate kinase family protein
Probab=97.49 E-value=0.00012 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.|..+++.||||+|||++|+.|++.+
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999999984
No 373
>KOG2383|consensus
Probab=97.49 E-value=0.00029 Score=59.12 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=61.4
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cc-------ccc---C-CCCchhHHHHHHhHHHHH
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NS-------RIH---F-PNENHVSLYRLQLTNWII 115 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~-------~~~---~-~~~~~~~~~~~~l~~~~~ 115 (202)
+.|.++.++|..|||||.|...+...+.+.+++ .-++.+ |. .+. + ..+++...+.-+....+.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rk----qRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA 187 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRK----QRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVA 187 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhh----hhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHH
Confidence 347789999999999999999987664442111 111111 10 000 0 001111000000011122
Q ss_pred HhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 116 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 116 ~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
+.+.. ...++-|||++--+-.-.-.|.++++.= -...++++.|||..++.+-+..+
T Consensus 188 ~eIa~-ea~lLCFDEfQVTDVADAmiL~rLf~~L------f~~GvVlvATSNR~P~dLYknGl 243 (467)
T KOG2383|consen 188 DEIAE-EAILLCFDEFQVTDVADAMILKRLFEHL------FKNGVVLVATSNRAPEDLYKNGL 243 (467)
T ss_pred HHHhh-hceeeeechhhhhhHHHHHHHHHHHHHH------HhCCeEEEEeCCCChHHHhhcch
Confidence 22221 1368889999766554333444444431 01467888999999987765544
No 374
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.49 E-value=0.0012 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
++|.||+|+|||+|+++|-..
T Consensus 4 imliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 689999999999999998654
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.49 E-value=0.00037 Score=61.77 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=31.2
Q ss_pred ceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 123 RAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 123 ~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+++|+||+ ..++++..+.|.+++.+.- ..+++|-++-..
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~l-------p~~tvISV~Hr~ 574 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEEL-------PDATVISVGHRP 574 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhC-------CCCEEEEeccch
Confidence 478999999 7788899999999998832 566777666443
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.49 E-value=0.00039 Score=56.02 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=45.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-hcccccCCCCchhH---H-HHHHhHHHHHHhhhhCCceEEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVS---L-YRLQLTNWIISNVTACDRAIFI 127 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~l~~~~~~~l~~~~~~vii 127 (202)
.+++.||+|+|||++.+++...+.. .. ..++.+ +..++..+.+.... . -...+...+...++.. .++++
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~---~~--~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~-pD~ii 202 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPP---ED--ERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQD-PDVII 202 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHT---TT--SEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEE
T ss_pred EEEEECCCccccchHHHHHhhhccc---cc--cceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCC-CCccc
Confidence 6999999999999999999998655 20 111111 01111111100000 0 0001123344445544 47899
Q ss_pred EecCCCCChhHHHHHHHhcccC
Q psy1695 128 FDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 128 iDEid~~~~~~~~~L~~~le~~ 149 (202)
+.|+-.. ++... ++.+..|
T Consensus 203 igEiR~~--e~~~~-~~a~~tG 221 (270)
T PF00437_consen 203 IGEIRDP--EAAEA-IQAANTG 221 (270)
T ss_dssp ESCE-SC--HHHHH-HHHHHTT
T ss_pred ccccCCH--hHHHH-HHhhccC
Confidence 9999754 45555 6677765
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.48 E-value=0.00074 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+|||++.+.++..+.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 5889999999999999999987544
No 378
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.48 E-value=0.0013 Score=51.06 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++++||+|+|||++.+.++..
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 379
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.48 E-value=0.00084 Score=55.57 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
...++||||+|||++|..++.....
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999988766543
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.47 E-value=8e-05 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||+|+|||++|+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 3688999999999999999985
No 381
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.47 E-value=0.00045 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++|-||+|||++|+.|++.+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Confidence 789999999999999999999765
No 382
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00011 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++++|+||+||||+|+.+++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999885
No 383
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0077 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+-.++|+||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4478999999999999999999875
No 384
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.45 E-value=0.00049 Score=55.65 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=23.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++.||+|+|||++.+.++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 47899999999999999999998755
No 385
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.45 E-value=0.00012 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++++|++|+|||++|+.+|+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999985
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.44 E-value=0.0018 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||+|+|||++.+.++...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999998654
No 387
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.44 E-value=0.00045 Score=58.57 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+++||+|+|||++++.+++.+..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcc
Confidence 3889999999999999999998644
No 388
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00013 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||||+||||+|+.||+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999994
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0031 Score=50.97 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=60.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-------------cccccCCCCchhHHHHHHhHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------------NSRIHFPNENHVSLYRLQLTNWIISNV 118 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~l 118 (202)
-.++|.||+|+|||++++.++..+.. .+....++..+ ...+..+... .. ....+...+.. +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~-~~-~~~~l~~~l~~-l 149 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-VR-DEAAMTRALTY-F 149 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEe-cC-CHHHHHHHHHH-H
Confidence 36899999999999999999988754 22111111110 0111111000 00 01112222222 2
Q ss_pred hh-CCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 119 TA-CDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 119 ~~-~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
.. ...++++||...+.+. .....|.++++... -..+++++.++...+.+.+.
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~------~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC------CCeEEEEEcCccCHHHHHHH
Confidence 22 3569999999999863 45666666655321 13456666666666555443
No 390
>PRK14532 adenylate kinase; Provisional
Probab=97.42 E-value=0.00012 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.||||+|||++|+.||+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999985
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.42 E-value=0.00016 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.|+||+|||++|+.+++.+.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999999853
No 392
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.42 E-value=0.0011 Score=59.51 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
.+++|+||+...+......|++.+..+
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccC
Confidence 389999999999999888888887653
No 393
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.40 E-value=0.00014 Score=55.06 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.||||+|||++++.+++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999875
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.40 E-value=0.00017 Score=56.92 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|+-+++.||||+|||++|+.||+.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45568999999999999999999985
No 395
>PHA02624 large T antigen; Provisional
Probab=97.40 E-value=0.00034 Score=61.97 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=23.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++|+||+|||||+++.+|.+.+.+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 37999999999999999999999744
No 396
>PRK13947 shikimate kinase; Provisional
Probab=97.39 E-value=0.00016 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.|+||+|||++|+.+|+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 397
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.39 E-value=0.00043 Score=67.26 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=55.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcC------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEE
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF 126 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vi 126 (202)
+++|.|.||+|||++..++|+.... +-. ..+.+..+.+.+.....+.+. |.+ ..+..+++.+ .-+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~---kliRINLSeQTdL~DLfGsd~Pve~~Gef~-w~d---apfL~amr~G--~WV 1615 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGK---KLIRINLSEQTDLCDLFGSDLPVEEGGEFR-WMD---APFLHAMRDG--GWV 1615 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcC---ceEEeeccccchHHHHhCCCCCcccCceeE-ecc---cHHHHHhhcC--CEE
Confidence 4799999999999999999998432 100 112222223333222222222 322 1222334443 468
Q ss_pred EEecCCCCChhHHHHHHHhcccCc
Q psy1695 127 IFDEVDKFPKGLLDVIIPFIDHHA 150 (202)
Q Consensus 127 iiDEid~~~~~~~~~L~~~le~~~ 150 (202)
++||++.++..++..|...|+...
T Consensus 1616 lLDEiNLaSQSVlEGLNacLDhR~ 1639 (4600)
T COG5271 1616 LLDEINLASQSVLEGLNACLDHRR 1639 (4600)
T ss_pred EeehhhhhHHHHHHHHHHHHhhcc
Confidence 899999999999999999998643
No 398
>PHA01747 putative ATP-dependent protease
Probab=97.39 E-value=0.0011 Score=55.25 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEE
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 127 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vii 127 (202)
.+.+.+++=.||.|||||++-+.+.....-.. .|-.......+.. ......+.+ +.+++|+
T Consensus 187 ~~~NyNliELgPRGTGKS~~f~eis~fsp~~i-SGG~~TvA~LFyN-~~t~~~GLV-----------------g~~D~Va 247 (425)
T PHA01747 187 SKRPVHIIELSNRGTGKTTTFVILQELFNFRY-YTEPPTYANLVYD-AKTNALGLV-----------------FLSNGLI 247 (425)
T ss_pred CCCCeeEEEecCCCCChhhHHHHhhhcCCcee-eCCCCchHHheEe-cCCCceeEE-----------------eeccEEE
Confidence 34566788889999999999988755210000 0000000000000 000001111 1247899
Q ss_pred EecCCCCC----hhHHHHHHHhcccCccccccc--C------CceEEEEeeCcC
Q psy1695 128 FDEVDKFP----KGLLDVIIPFIDHHAVYNQIS--F------QNTIFLFLSNSG 169 (202)
Q Consensus 128 iDEid~~~----~~~~~~L~~~le~~~~~~~~~--~------~~~~~Iltsn~~ 169 (202)
|||+.... .++.+.|...|+.|.+.++.. . ..+.+|+.-|..
T Consensus 248 FDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin 301 (425)
T PHA01747 248 FDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD 301 (425)
T ss_pred EEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence 99998765 467888888899998877642 2 267888888876
No 399
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.39 E-value=0.00095 Score=63.21 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh--------hcccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA 124 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 124 (202)
..++.|++|||||++.+.+.+.+.. .|. .++-. .+....+.....+..+. ...-...-.-.+..
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~---~G~--~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~ 470 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEA---AGY--RVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKT 470 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH---cCC--eEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCc
Confidence 5789999999999999999887544 221 01000 00000000000111000 00000000011247
Q ss_pred EEEEecCCCCChhHHHHHHHhccc
Q psy1695 125 IFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 125 viiiDEid~~~~~~~~~L~~~le~ 148 (202)
||||||+..++......|++..+.
T Consensus 471 vlVIDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 471 VFVLDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EEEEECcccCCHHHHHHHHHHHHh
Confidence 999999999999888888888764
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.39 E-value=0.0039 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||++.+++...+..
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCC
Confidence 4899999999999999999887643
No 401
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.38 E-value=0.0022 Score=48.79 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=18.9
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
++++||.|.|||++.+.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999854
No 402
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.38 E-value=0.0016 Score=62.51 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred EEEEecCCCCcHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTD 69 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~ 69 (202)
+++++|+||+|||+..=
T Consensus 84 vvii~g~TGSGKTTqlP 100 (1283)
T TIGR01967 84 VVIIAGETGSGKTTQLP 100 (1283)
T ss_pred eEEEeCCCCCCcHHHHH
Confidence 68999999999999653
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.38 E-value=0.0024 Score=49.22 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.++|+||.|+|||++.+.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 589999999999999999983
No 404
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.38 E-value=0.00053 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=17.3
Q ss_pred EEEEecCCCCcHHHHH-HHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVT-DFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la-~~la~~l 75 (202)
.+++.||+|+|||..+ ..+.+.+
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHh
Confidence 6799999999999944 4444443
No 405
>PRK04040 adenylate kinase; Provisional
Probab=97.38 E-value=0.00019 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
|..++++|+||+|||++++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999999997
No 406
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.38 E-value=0.0013 Score=55.49 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||+|+|||++.+++.+++..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 407
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.37 E-value=0.00022 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+.+.||+|+||||++++++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455688999999999999999998864
No 408
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.36 E-value=0.00077 Score=58.13 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+|..+++.|++|+|||++|..+|..+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688899999999999999999999964
No 409
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00021 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.1
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.+|..++|+||+|+|||++++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 346777899999999999999999764
No 410
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.00018 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||||+|||++++.||+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 411
>PRK00625 shikimate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|+|.||+|||++++.+|+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 412
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.35 E-value=0.0051 Score=46.61 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..+.+.|++|+|||++|+.++..+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5557999999999999999999999754
No 413
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=56.08 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||||+|||++|+.||+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 414
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00091 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.||+|+|||++.+.++..+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999988753
No 415
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.33 E-value=0.0009 Score=55.08 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.|..+++.||+|+|||++|..||+.+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC
Confidence 345789999999999999999999863
No 416
>KOG0479|consensus
Probab=97.33 E-value=0.0014 Score=57.54 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=86.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhH----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc---ccCcCcc
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHF----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTS 85 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~---~~~~~~~ 85 (202)
++-|...|-..+.|++.+++.+.-.+.... .+..+-+.-..+|++|.|-|.||-|.|.+-+..... ++.| +
T Consensus 292 FdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRG--S 369 (818)
T KOG0479|consen 292 FDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRG--S 369 (818)
T ss_pred HHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCC--C
Confidence 556667778889999999998877776532 222111112359999999999999999887763210 0011 1
Q ss_pred chhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCc
Q psy1695 86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQN 159 (202)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~ 159 (202)
.-+....+ ...+. ..| + .+--.+++--+..+|+-|||+|||+.--.-++..+||.+.++.. .=...
T Consensus 370 SGVGLTAA--VTtD~-eTG---E--RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNAR 441 (818)
T KOG0479|consen 370 SGVGLTAA--VTTDQ-ETG---E--RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNAR 441 (818)
T ss_pred CCccceeE--Eeecc-ccc---h--hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccc
Confidence 00111000 00011 111 1 11111233334568999999999998878889999999876532 12345
Q ss_pred eEEEEeeCc
Q psy1695 160 TIFLFLSNS 168 (202)
Q Consensus 160 ~~~Iltsn~ 168 (202)
+.++..+|.
T Consensus 442 CSVlAAANP 450 (818)
T KOG0479|consen 442 CSVLAAANP 450 (818)
T ss_pred eeeeeecCc
Confidence 666666664
No 417
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.32 E-value=0.0022 Score=47.69 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
|...+++||.|+|||++.++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 336899999999999999998777654
No 418
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.31 E-value=0.00042 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+++.||||+|||.++..++...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHh
Confidence 369999999999999998777553
No 419
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.0002 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
-+++.|++|+|||++|+.|++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999863
No 420
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.30 E-value=0.0017 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..+++.||||+|||++|..++..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999877665
No 421
>PRK09354 recA recombinase A; Provisional
Probab=97.30 E-value=0.0018 Score=54.13 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
...++||+|+|||+++..++....
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999988776643
No 422
>PRK07667 uridine kinase; Provisional
Probab=97.30 E-value=0.00042 Score=53.18 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++.+.+.|++|+|||++|+.|++.+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467899999999999999999999754
No 423
>PRK02496 adk adenylate kinase; Provisional
Probab=97.29 E-value=0.00023 Score=54.02 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
-+++.||||+|||++|+.|++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999985
No 424
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.00022 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||||+|||++|+.||+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999984
No 425
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.29 E-value=0.00071 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..++|+|++|+|||++++.+|+.+.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 445799999999999999999999863
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.29 E-value=0.00023 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||+|+|||++++.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999854
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.28 E-value=0.00035 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+-.+.|.|++|+|||++|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3446899999999999999999999754
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.28 E-value=0.00025 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.+.|+||+|||++|+.|++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999985
No 429
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.28 E-value=0.003 Score=60.68 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.1
Q ss_pred EEEEecCCCCcHHHHH
Q psy1695 53 AISLHGLPGTGKNYVT 68 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la 68 (202)
+++++|++|||||+..
T Consensus 91 VviI~GeTGSGKTTql 106 (1294)
T PRK11131 91 VVIVAGETGSGKTTQL 106 (1294)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6889999999999953
No 430
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.28 E-value=0.0013 Score=56.96 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.9
Q ss_pred CceE-EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALA-ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~-~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|.+ +|++||+|+|||++..++.+.++.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4445 889999999999999999888766
No 431
>PRK13949 shikimate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++|++|+|||++++.+|+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999998643
No 432
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0023 Score=59.14 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=28.8
Q ss_pred CCceEEEEecCCCCChh--H-HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695 121 CDRAIFIFDEVDKFPKG--L-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178 (202)
Q Consensus 121 ~~~~viiiDEid~~~~~--~-~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~ 178 (202)
..+++|||||++.=+-+ . +..|.+++...+ . .=.++|+.+++..+.+.+.+.
T Consensus 161 s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----~--DLKiIimSATld~~rfs~~f~ 215 (845)
T COG1643 161 SGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----D--DLKLIIMSATLDAERFSAYFG 215 (845)
T ss_pred ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC----C--CceEEEEecccCHHHHHHHcC
Confidence 34699999999755432 2 222333333322 0 134556666777777766654
No 433
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.27 E-value=0.00084 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++.|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999876
No 434
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.27 E-value=0.00026 Score=57.89 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+++.|+||+|||++|+.+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 368899999999999999999985
No 435
>PRK12338 hypothetical protein; Provisional
Probab=97.27 E-value=0.00031 Score=57.90 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+|..+++.|+||+|||++|+.+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 677899999999999999999999963
No 436
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.26 E-value=0.00042 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=23.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+|+||+|+|||++..++.-.|++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999999999877
No 437
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.26 E-value=0.002 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.|+||+|||+++..++....
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999988877643
No 438
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.25 E-value=0.0006 Score=48.47 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++|.|+=|+|||++++.+++.+..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999743
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0077 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+-.+.|+||+|+||||+...||...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3368999999999999999998753
No 440
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.0049 Score=51.94 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
-.+++||+|||||++++.+++.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999998754
No 441
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.25 E-value=0.00076 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|.+||+|+|||+...++-.++..
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhc
Confidence 788999999999999999999776
No 442
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.24 E-value=0.00078 Score=50.34 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|.+|++.+.+.+... . .+...+|.+|+|+|||.++..++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~-~------~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENK-K------EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTT-S------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc-C------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 3777777777766654 0 1236899999999999999987776554
No 443
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00032 Score=53.59 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..++|+||+|+|||++++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 56679999999999999999998763
No 444
>PRK10646 ADP-binding protein; Provisional
Probab=97.24 E-value=0.00086 Score=49.48 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+....+.+.+...+.... .++|.|+=|+|||++++.+++.+..
T Consensus 10 s~~~t~~l~~~la~~l~~g~------vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 10 DEQATLDLGARVAKACDGAT------VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CHHHHHHHHHHHHHhCCCCc------EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44556666677766654322 7899999999999999999999754
No 445
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00031 Score=57.85 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.||+.|-.++.+.+.... -.+++.-+|.|||.+.-...+....
T Consensus 100 ~~Q~~as~~l~q~i~~k~----------~~lv~AV~GaGKTEMif~~i~~al~ 142 (441)
T COG4098 100 PGQKKASNQLVQYIKQKE----------DTLVWAVTGAGKTEMIFQGIEQALN 142 (441)
T ss_pred hhHHHHHHHHHHHHHhcC----------cEEEEEecCCCchhhhHHHHHHHHh
Confidence 478888888877776542 3688999999999988544444333
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00028 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.|||||||||+|+.||+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 356889999999999999999953
No 447
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.00069 Score=57.31 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++||+|+|||++++.+++.+..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 788899999999999999998654
No 448
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.23 E-value=0.00031 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+.||+|+|||++|+.|+..|..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999999875
No 449
>PLN02840 tRNA dimethylallyltransferase
Probab=97.22 E-value=0.0014 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+++.||+|+|||++|..||+.+.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCC
Confidence 344689999999999999999999964
No 450
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.22 E-value=0.0049 Score=46.69 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+++||.|+|||.+..++.-.+..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4679999999999999999887655
No 451
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.22 E-value=0.0003 Score=56.13 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|+|+||+|||++|+.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 452
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.21 E-value=0.0058 Score=50.26 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 15 VLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 15 ~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.+-|.+-+-|.++.++.+.+.+...+.... .....++|+|+.|+|||++...+...+
T Consensus 42 ~~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~~--~~~~~~~l~G~g~nGKStl~~~l~~l~ 100 (304)
T TIGR01613 42 TWNGFLLETFGGDNELIEYLQRVIGYSLTGNY--TEQKLFFLYGNGGNGKSTFQNLLSNLL 100 (304)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHhHHhcCCC--CceEEEEEECCCCCcHHHHHHHHHHHh
Confidence 34555665555565567777666665554422 234468999999999999999887664
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.21 E-value=0.0011 Score=57.48 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.|+||+|||+++..++..+..
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~ 120 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK 120 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887654
No 454
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.018 Score=49.17 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhh----------
Q psy1695 28 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHK---------- 90 (202)
Q Consensus 28 ~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~---------- 90 (202)
+..++.+.+-+...+...+ ..+.|..++++|--|+||||.+--||.++....+... ..+.++.
T Consensus 72 q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La 151 (451)
T COG0541 72 QQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLA 151 (451)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHH
Confidence 3444555555544444211 1245778999999999999999999999876211100 1111111
Q ss_pred ---hcccccC-CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 91 ---FNSRIHF-PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 91 ---~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
...-+.. .....+ .+...-.+......++|+|+|-+.+++- +..+.+..+-+.- .-..+++++
T Consensus 152 ~q~~v~~f~~~~~~~Pv-----~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~------~P~E~llVv 220 (451)
T COG0541 152 EQVGVPFFGSGTEKDPV-----EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI------NPDETLLVV 220 (451)
T ss_pred HHcCCceecCCCCCCHH-----HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc------CCCeEEEEE
Confidence 0011111 011111 1223333345556679999999988864 3444444433321 115566666
Q ss_pred eeCcChHHH
Q psy1695 165 LSNSGGTEI 173 (202)
Q Consensus 165 tsn~~~~~i 173 (202)
-+-.+.+..
T Consensus 221 Dam~GQdA~ 229 (451)
T COG0541 221 DAMIGQDAV 229 (451)
T ss_pred ecccchHHH
Confidence 666665443
No 455
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0014 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+-++|++||||||+++.+.....+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCC
Confidence 5889999999999999999998654
No 456
>KOG3347|consensus
Probab=97.20 E-value=0.00031 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+|++|-||||||+++..+|+.+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh
Confidence 58999999999999999999773
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.19 E-value=0.0044 Score=48.71 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=19.5
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+++.||.|+|||++.+.++.
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 458
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.18 E-value=0.00039 Score=51.13 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+++.|+||+|||++|+.++..+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999753
No 459
>PRK14528 adenylate kinase; Provisional
Probab=97.18 E-value=0.00037 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.||||+|||++|+.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 460
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.16 E-value=0.00036 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||||+|||++|+.||+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999874
No 461
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.16 E-value=0.0035 Score=56.69 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=19.0
Q ss_pred ceEEEEecCCCCChhHHHHHHHhcc
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFID 147 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le 147 (202)
.+++|+||+|++.......|+....
T Consensus 358 l~lvVIDEaH~fg~~qr~~l~~~~~ 382 (630)
T TIGR00643 358 LALVIIDEQHRFGVEQRKKLREKGQ 382 (630)
T ss_pred cceEEEechhhccHHHHHHHHHhcc
Confidence 4899999999998776666665443
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.16 E-value=0.00029 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.||+|+|||++++.|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998874
No 463
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.16 E-value=0.0015 Score=52.33 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHh---hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 10 SSNVRVLEEQLKQ---HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 10 ~~~~~~l~~~L~~---~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.++.+++..+.. -+-=|..+.+.+...+..++.... .+.|..+-+.|++|+|||++|+.++..+..
T Consensus 39 ~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~pfIIgiaGsvavGKST~ar~L~~ll~~ 108 (283)
T COG1072 39 PISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNN-QQRPFIIGIAGSVAVGKSTTARILQALLSR 108 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence 3455555544432 222245566666666666664333 557888999999999999999999999766
No 464
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.15 E-value=0.00039 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHhh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++++||||+|||++|+.||+.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999853
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.15 E-value=0.00048 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|..+++.|+||+|||++|+.+++.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35578999999999999999999985
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.14 E-value=0.00041 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.+.||+|+|||++++.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 467
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.14 E-value=0.00038 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.8
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.|+|++|||||++++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 579999999999999999988
No 468
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.00046 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+.++||+|+|||++++.++..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999985
No 469
>KOG3354|consensus
Probab=97.13 E-value=0.011 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=23.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++.|++|+|||++++++++.|..
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCC
Confidence 6889999999999999999999755
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.12 E-value=0.001 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||++.+++...+.+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 6899999999999999999988644
No 471
>KOG0482|consensus
Probab=97.11 E-value=0.0013 Score=56.87 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC-CC---CCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccch
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-HN---TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRF 87 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~-~~---~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~ 87 (202)
-+.|...+..+++|++++++.+.-.+-....... +. +.-..++|.|.||+.||-|.+.+.+..-+. +..|..+.-
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG 412 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG 412 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc
Confidence 4667777888999999999988766655332111 00 111359999999999999999988763321 000000100
Q ss_pred hhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 88 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
+....+-+..+..+... .+ -+++--+..+|--|||+|||...-...+..+||...+
T Consensus 413 VGLTAAVmkDpvTgEM~-LE-------GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 413 VGLTAAVMKDPVTGEMV-LE-------GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI 468 (721)
T ss_pred cccchhhhcCCCCCeeE-ec-------cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence 11111111111110000 00 0122223457778999999999888899999987543
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.11 E-value=0.00054 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.|++|+|||++++.+|+.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc
Confidence 58999999999999999999985
No 473
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.11 E-value=0.016 Score=45.53 Aligned_cols=119 Identities=17% Similarity=0.244 Sum_probs=57.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh------hhhc-----ccccCCCCchhHHHHHHh----HHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HKFN-----SRIHFPNENHVSLYRLQL----TNWI 114 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~l----~~~~ 114 (202)
.+++++++|-|+.|||++|+.|+++|.= .|....+. +... +.+..+........++++ ...+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w---~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNW---LGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh---cCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999854 33322111 1111 111111111111122211 1233
Q ss_pred HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695 115 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179 (202)
Q Consensus 115 ~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~ 179 (202)
...+......|-|+|--+. ..+-...|...+.+.. -+++||=.....++.+...+.+
T Consensus 88 ~~~l~~~~G~VAI~DATN~-T~~RR~~l~~~~~~~~-------~~vlFIEsic~D~~ii~~NI~~ 144 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNS-TRERRKMLVERFKEHG-------IKVLFIESICDDPEIIERNIRE 144 (222)
T ss_dssp HHHHHTS--SEEEEES----SHHHHHHHHHHHHHTT--------EEEEEEEE---HHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCC-CHHHHHHHHHHHHHcC-------CcEEEEEEEeCCHHHHHHHHHH
Confidence 4445545567888886543 4455666666666532 3555555555555555555543
No 474
>KOG2228|consensus
Probab=97.10 E-value=0.012 Score=48.84 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred CchHHHHHHHHhhC-------CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHH
Q psy1695 11 SNVRVLEEQLKQHV-------HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI 71 (202)
Q Consensus 11 ~~~~~l~~~L~~~l-------iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~l 71 (202)
.++..++..|.+++ .|..+--+.+.+.+++-...+ ....+++.||.|+|||.+....
T Consensus 6 ~dl~siqr~l~~rl~~~~~~l~g~~~~~~~l~~~lkqt~~~g----EsnsviiigprgsgkT~li~~~ 69 (408)
T KOG2228|consen 6 SDLSSIQRILRERLCGPHINLFGVQDEQKHLSELLKQTILHG----ESNSVIIIGPRGSGKTILIDTR 69 (408)
T ss_pred hhHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHHHHHHHhc----CCCceEEEccCCCCceEeeHHH
Confidence 35667777776654 455555666666676643332 2226899999999999976443
No 475
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.09 E-value=0.0025 Score=56.86 Aligned_cols=64 Identities=11% Similarity=0.294 Sum_probs=43.3
Q ss_pred cCCCchHHHHHHHHhhC-----CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 8 IQSSNVRVLEEQLKQHV-----HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 8 ~~~~~~~~l~~~L~~~l-----iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.++-..+++.|.... +-..++.+.+.+..... .++|..++|+|++|+|||++|+.+++.+..
T Consensus 350 ~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r------~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 350 VLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPR------HKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred eeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccc------cCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45566678888787643 33444444333332221 346667999999999999999999999763
No 476
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.09 E-value=0.0058 Score=47.79 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++++||+|+|||++.+.++..
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999999999753
No 477
>PRK13975 thymidylate kinase; Provisional
Probab=97.09 E-value=0.00059 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.|++|+|||++++.|++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999753
No 478
>PLN02459 probable adenylate kinase
Probab=97.09 E-value=0.0006 Score=54.68 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|+.++|.||||+||+++|..+|+.+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568889999999999999999985
No 479
>PRK04328 hypothetical protein; Provisional
Probab=97.09 E-value=0.003 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++.||||+|||.++..++..
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999887665
No 480
>PRK13946 shikimate kinase; Provisional
Probab=97.08 E-value=0.00057 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+++.|++|+|||++++.+|+.+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999863
No 481
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.07 E-value=0.00049 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.||+|+|||++++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999874
No 482
>PRK13764 ATPase; Provisional
Probab=97.07 E-value=0.0036 Score=55.95 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+||||++++++..+..
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999754
No 483
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0023 Score=55.38 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.9
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++-|+|+|||.+|..++..+..
T Consensus 58 gvivlpTGaGKT~va~~~~~~~~~ 81 (442)
T COG1061 58 GVIVLPTGAGKTVVAAEAIAELKR 81 (442)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhcC
Confidence 577889999999999999998655
No 484
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=97.06 E-value=0.00062 Score=54.97 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=54.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.+.|+||++||||.+|.+|+..+.. -| .+ +.. ...+ .+..+....+++.|=-
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~---~G----~v--n~~-----n~nF--------------~f~d~~~k~l~~weE~ 166 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPN---YG----CV--NWN-----NNNF--------------PFQDCFNKRLIWWEEP 166 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCC---EE----EE--ECT-----TTCC--------------CCCCCCCECEEECTCG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCc---cc----Ee--ccC-----CCCC--------------ChhhhhhccEEEeccc
Confidence 6999999999999999999888422 11 11 110 0111 1233444444444444
Q ss_pred CCChhHHHHHHHhcccCcccc------cccCCceEEEEeeCc
Q psy1695 133 KFPKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNS 168 (202)
Q Consensus 133 ~~~~~~~~~L~~~le~~~~~~------~~~~~~~~~Iltsn~ 168 (202)
.+.....+.+..++.-..+.- ......+.+|+|||.
T Consensus 167 ~~~~~~ve~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~ 208 (271)
T PF01057_consen 167 NMYPDEVETAKMILGGTPVRVDVKNKDSEELERTPVIITSNN 208 (271)
T ss_dssp GCCTTCHHHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECC
T ss_pred CccHHHHHHHHHHhCCCceEeecccCCceEecCCceEEEecc
Confidence 677778888888877554321 235677788889985
No 485
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.06 E-value=0.0019 Score=58.90 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.++|++|+||||+++.+.....+
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 889999999999999999887544
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.01 Score=47.08 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.|..+++.|++|+|||++...+...+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 455689999999999999999887653
No 487
>PRK14526 adenylate kinase; Provisional
Probab=97.06 E-value=0.00055 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++|+||||+|||++++.+|+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999874
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.05 E-value=0.00045 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.||+|+|||++++.|++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999999864
No 489
>PLN02748 tRNA dimethylallyltransferase
Probab=97.05 E-value=0.0026 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+++.||+|+|||++|..||..+.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444688999999999999999999964
No 490
>PTZ00301 uridine kinase; Provisional
Probab=97.05 E-value=0.00067 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.|+||+||||+|+.|++.+.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 491
>PLN02674 adenylate kinase
Probab=97.04 E-value=0.0013 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..++|.||||+||++.|+.||+.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999984
No 492
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.03 E-value=0.0042 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.++||+|+||||+++.+.....+
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999887544
No 493
>KOG2680|consensus
Probab=97.02 E-value=0.0008 Score=54.75 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+..+||-.|.+...-.++-...+.- ...++++.|+||+|||.+|..+++.|-.
T Consensus 38 ~s~GmVGQ~~AR~Aagvi~kmi~egki---aGraiLiaG~pgtGKtAiAmg~sksLG~ 92 (454)
T KOG2680|consen 38 VSEGMVGQVKARKAAGVILKMIREGKI---AGRAILIAGQPGTGKTAIAMGMSKSLGD 92 (454)
T ss_pred ccccchhhHHHHHHhHHHHHHHHcCcc---cceEEEEecCCCCCceeeeeehhhhhCC
Confidence 345789998887775444443333321 2337999999999999999999999654
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00054 Score=51.23 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=21.3
Q ss_pred cCCceEEEEeeCcChHHHHHHHHHHHH
Q psy1695 156 SFQNTIFLFLSNSGGTEIMNTFLELRK 182 (202)
Q Consensus 156 ~~~~~~~Iltsn~~~~~i~~~~~~~~~ 182 (202)
.+..++.|=|||.+.+.+.+...+...
T Consensus 129 ~~~~v~evdtt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 129 RFEAVIEVDTTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHHHc
Confidence 346788889999999998888876544
No 495
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.02 E-value=0.0014 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++||+|+|||++++++...+.
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999998864
No 496
>PRK13948 shikimate kinase; Provisional
Probab=97.01 E-value=0.00079 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
|-.++|.|.+|+|||++++.+|+.+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44689999999999999999999863
No 497
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.00 E-value=0.0071 Score=56.18 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=15.0
Q ss_pred EEEEecCCCCcHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTD 69 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~ 69 (202)
.+++.||+|+|||+..-
T Consensus 22 ~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred CEEEEcCCCCCHHHHHH
Confidence 58999999999999764
No 498
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.00 E-value=0.011 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..++++||...|||++.+.++....
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~i 68 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVI 68 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhh
Confidence 3689999999999999999988753
No 499
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.00 E-value=0.00069 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|+|++|+|||++++.+|+.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999985
No 500
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.00 E-value=0.0043 Score=62.51 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.|++|||||++.+.+.+.+..
T Consensus 448 v~ii~G~aGTGKTt~l~~l~~~~~~ 472 (1960)
T TIGR02760 448 FIIINGFGGTGSTEIAQLLLHLASE 472 (1960)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999988654
Done!