Query psy1695
Match_columns 202
No_of_seqs 202 out of 1626
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 17:50:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pxi_A Negative regulator of g 99.9 5E-21 1.7E-25 172.9 14.3 168 12-192 481-653 (758)
2 1qvr_A CLPB protein; coiled co 99.9 6.8E-21 2.3E-25 174.0 14.8 173 14-194 550-750 (854)
3 1r6b_X CLPA protein; AAA+, N-t 99.9 1.1E-20 3.8E-25 170.6 16.0 152 12-174 448-613 (758)
4 4fcw_A Chaperone protein CLPB; 99.8 1.7E-20 5.8E-25 152.2 14.3 154 12-173 7-174 (311)
5 3syl_A Protein CBBX; photosynt 99.8 8.2E-18 2.8E-22 136.3 14.0 157 12-188 21-195 (309)
6 3hws_A ATP-dependent CLP prote 99.7 1.2E-17 4E-22 138.8 8.5 143 12-168 5-190 (363)
7 3n70_A Transport activator; si 99.7 3.9E-17 1.3E-21 118.8 9.0 119 23-173 2-120 (145)
8 4b4t_J 26S protease regulatory 99.7 1.7E-16 5.7E-21 132.7 13.4 159 22-201 148-334 (405)
9 1ofh_A ATP-dependent HSL prote 99.7 3.7E-16 1.3E-20 126.3 11.4 149 10-168 3-177 (310)
10 1um8_A ATP-dependent CLP prote 99.7 1.7E-16 5.8E-21 132.3 9.4 147 12-168 11-211 (376)
11 4b4t_H 26S protease regulatory 99.7 9.4E-16 3.2E-20 129.9 13.2 159 22-201 209-395 (467)
12 3co5_A Putative two-component 99.6 9.9E-17 3.4E-21 116.4 4.2 115 23-172 5-119 (143)
13 4b4t_L 26S protease subunit RP 99.6 8.4E-15 2.9E-19 124.0 14.8 159 22-201 181-367 (437)
14 4b4t_I 26S protease regulatory 99.6 9.9E-15 3.4E-19 122.6 14.3 159 22-201 182-368 (437)
15 3t15_A Ribulose bisphosphate c 99.6 4.1E-15 1.4E-19 120.2 10.8 115 48-170 33-166 (293)
16 2bjv_A PSP operon transcriptio 99.6 6E-15 2E-19 117.2 10.8 136 23-173 7-155 (265)
17 4b4t_K 26S protease regulatory 99.6 2.1E-14 7E-19 121.4 13.7 145 22-187 172-335 (428)
18 3eie_A Vacuolar protein sortin 99.6 1.7E-14 5.9E-19 117.9 12.7 134 22-171 18-166 (322)
19 4b4t_M 26S protease regulatory 99.6 1.6E-14 5.5E-19 122.2 12.1 132 22-170 181-331 (434)
20 3h4m_A Proteasome-activating n 99.6 2.3E-14 7.8E-19 114.8 12.2 135 22-170 17-167 (285)
21 1xwi_A SKD1 protein; VPS4B, AA 99.6 3.5E-14 1.2E-18 116.2 13.2 134 22-170 12-160 (322)
22 3pfi_A Holliday junction ATP-d 99.6 3.7E-14 1.3E-18 116.3 13.0 125 22-170 29-165 (338)
23 2qp9_X Vacuolar protein sortin 99.6 4.9E-15 1.7E-19 122.9 7.5 133 22-170 51-198 (355)
24 2qz4_A Paraplegin; AAA+, SPG7, 99.6 6.2E-14 2.1E-18 110.7 13.3 134 22-170 6-156 (262)
25 3m6a_A ATP-dependent protease 99.5 9.5E-15 3.3E-19 127.4 8.7 147 10-170 69-235 (543)
26 1ojl_A Transcriptional regulat 99.5 3.7E-14 1.3E-18 115.2 11.5 135 22-172 2-150 (304)
27 1iqp_A RFCS; clamp loader, ext 99.5 3.4E-14 1.2E-18 115.3 11.3 123 22-171 25-152 (327)
28 1d2n_A N-ethylmaleimide-sensit 99.5 1.3E-14 4.5E-19 115.7 8.5 140 15-170 26-178 (272)
29 3u61_B DNA polymerase accessor 99.5 3.2E-14 1.1E-18 116.0 10.2 117 22-170 26-147 (324)
30 2zan_A Vacuolar protein sortin 99.5 6.2E-14 2.1E-18 119.5 11.6 134 22-170 134-282 (444)
31 2chg_A Replication factor C sm 99.5 1.6E-13 5.6E-18 104.7 12.8 122 22-170 17-143 (226)
32 3b9p_A CG5977-PA, isoform A; A 99.5 1.4E-13 4.9E-18 110.8 13.0 135 22-170 21-170 (297)
33 1sxj_C Activator 1 40 kDa subu 99.5 1E-13 3.5E-18 114.0 11.3 121 23-170 26-151 (340)
34 3uk6_A RUVB-like 2; hexameric 99.5 2.2E-13 7.5E-18 112.7 13.3 53 22-77 44-96 (368)
35 3d8b_A Fidgetin-like protein 1 99.5 9.5E-14 3.3E-18 115.1 10.8 134 22-170 84-232 (357)
36 3vfd_A Spastin; ATPase, microt 99.5 1.1E-13 3.9E-18 115.8 11.2 134 22-170 115-263 (389)
37 2gno_A DNA polymerase III, gam 99.5 5.2E-14 1.8E-18 114.4 8.8 120 26-171 1-124 (305)
38 2c9o_A RUVB-like 1; hexameric 99.5 3.7E-13 1.3E-17 115.0 13.5 52 22-76 37-88 (456)
39 1jbk_A CLPB protein; beta barr 99.5 1.6E-13 5.5E-18 102.5 9.9 131 22-170 22-162 (195)
40 2chq_A Replication factor C sm 99.5 6.3E-14 2.1E-18 113.4 8.1 124 23-170 18-143 (319)
41 3cf0_A Transitional endoplasmi 99.5 8.5E-14 2.9E-18 112.8 8.3 132 22-170 15-165 (301)
42 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 8.2E-14 2.8E-18 120.1 8.6 139 12-171 12-161 (500)
43 1a5t_A Delta prime, HOLB; zinc 99.5 2.3E-13 7.8E-18 111.8 10.8 129 25-170 5-149 (334)
44 1sxj_D Activator 1 41 kDa subu 99.5 7.2E-14 2.5E-18 114.8 7.7 127 22-171 37-175 (353)
45 1hqc_A RUVB; extended AAA-ATPa 99.5 2.7E-13 9.4E-18 110.2 10.9 124 22-169 12-148 (324)
46 1sxj_B Activator 1 37 kDa subu 99.5 1.9E-13 6.6E-18 110.7 9.6 125 22-170 21-148 (323)
47 2p65_A Hypothetical protein PF 99.5 1.2E-13 4E-18 103.0 7.6 130 22-170 22-163 (187)
48 3pvs_A Replication-associated 99.5 2.4E-13 8.4E-18 115.8 10.5 105 22-149 26-133 (447)
49 3hu3_A Transitional endoplasmi 99.4 2.5E-13 8.4E-18 117.0 9.7 132 22-170 204-351 (489)
50 1g41_A Heat shock protein HSLU 99.4 6.7E-13 2.3E-17 112.5 12.0 67 11-77 4-76 (444)
51 1jr3_A DNA polymerase III subu 99.4 5E-13 1.7E-17 110.5 9.9 130 22-170 16-160 (373)
52 2ce7_A Cell division protein F 99.4 2.3E-12 7.8E-17 110.4 13.9 131 22-170 16-165 (476)
53 1njg_A DNA polymerase III subu 99.4 8.7E-13 3E-17 101.8 9.9 132 22-170 23-167 (250)
54 3cf2_A TER ATPase, transitiona 99.4 7.6E-13 2.6E-17 119.3 10.1 132 22-170 204-351 (806)
55 1lv7_A FTSH; alpha/beta domain 99.4 2E-12 6.9E-17 102.1 11.2 131 22-170 12-161 (257)
56 2r62_A Cell division protease 99.4 1.3E-13 4.3E-18 109.5 3.7 132 22-170 11-162 (268)
57 2r44_A Uncharacterized protein 99.4 1.5E-12 5.2E-17 106.4 9.3 134 13-168 18-159 (331)
58 3cf2_A TER ATPase, transitiona 99.4 1.2E-13 4E-18 124.6 2.8 143 23-186 478-639 (806)
59 1sxj_E Activator 1 40 kDa subu 99.4 2.7E-12 9.2E-17 105.6 9.7 144 7-171 4-176 (354)
60 3te6_A Regulatory protein SIR3 99.3 5.7E-12 1.9E-16 102.7 9.8 137 23-170 21-174 (318)
61 2qby_B CDC6 homolog 3, cell di 99.3 1.9E-12 6.7E-17 107.4 7.0 137 20-169 18-174 (384)
62 1fnn_A CDC6P, cell division co 99.3 1.5E-11 5.3E-16 101.9 11.9 137 22-170 17-170 (389)
63 3f9v_A Minichromosome maintena 99.3 2.6E-13 9E-18 119.4 1.2 149 12-169 285-444 (595)
64 1sxj_A Activator 1 95 kDa subu 99.3 8.2E-12 2.8E-16 108.2 9.8 125 22-168 39-188 (516)
65 3ec2_A DNA replication protein 99.3 3.1E-11 1E-15 90.2 11.1 127 27-173 19-147 (180)
66 2v1u_A Cell division control p 99.3 5.1E-12 1.7E-16 104.6 6.6 140 22-169 19-177 (387)
67 2x8a_A Nuclear valosin-contain 99.3 4.9E-11 1.7E-15 95.4 11.9 136 22-175 10-161 (274)
68 1g8p_A Magnesium-chelatase 38 99.2 2.4E-12 8.3E-17 105.6 3.7 48 123-170 145-198 (350)
69 2w58_A DNAI, primosome compone 99.2 6E-12 2.1E-16 95.7 5.4 133 24-177 27-167 (202)
70 2z4s_A Chromosomal replication 99.2 1.8E-11 6.3E-16 104.1 7.8 131 20-172 104-240 (440)
71 2dhr_A FTSH; AAA+ protein, hex 99.2 1.1E-10 3.6E-15 100.7 12.0 127 22-169 31-179 (499)
72 1ny5_A Transcriptional regulat 99.2 8.3E-11 2.9E-15 98.4 11.1 135 23-173 138-286 (387)
73 3pxg_A Negative regulator of g 99.2 3.1E-11 1.1E-15 103.4 8.6 120 23-170 181-302 (468)
74 3bos_A Putative DNA replicatio 99.2 6.4E-12 2.2E-16 97.3 3.7 96 52-171 53-150 (242)
75 1l8q_A Chromosomal replication 99.2 1.2E-11 4.2E-16 100.8 5.3 105 51-171 37-143 (324)
76 3k1j_A LON protease, ATP-depen 99.2 1E-11 3.6E-16 109.5 4.6 46 22-77 41-86 (604)
77 1ypw_A Transitional endoplasmi 99.2 7.5E-11 2.6E-15 107.1 10.1 131 22-169 204-350 (806)
78 1qvr_A CLPB protein; coiled co 99.2 4.5E-11 1.5E-15 109.3 8.4 128 23-169 171-309 (854)
79 3dzd_A Transcriptional regulat 99.2 8E-11 2.7E-15 97.9 9.2 137 23-172 130-276 (368)
80 1r6b_X CLPA protein; AAA+, N-t 99.2 7.2E-11 2.5E-15 106.6 9.5 125 22-168 186-324 (758)
81 2qgz_A Helicase loader, putati 99.1 1.3E-10 4.4E-15 94.5 8.1 107 52-176 153-265 (308)
82 1ypw_A Transitional endoplasmi 99.1 5.7E-12 2E-16 114.4 -0.6 133 22-171 477-628 (806)
83 3pxi_A Negative regulator of g 99.1 1.3E-10 4.4E-15 105.0 8.2 117 23-170 181-302 (758)
84 1ixz_A ATP-dependent metallopr 99.1 5.2E-10 1.8E-14 88.0 9.9 53 22-75 16-73 (254)
85 2qby_A CDC6 homolog 1, cell di 99.1 1.7E-10 5.8E-15 95.2 7.1 135 22-169 20-173 (386)
86 1in4_A RUVB, holliday junction 99.0 1.2E-09 4E-14 89.6 10.6 104 23-149 26-129 (334)
87 1iy2_A ATP-dependent metallopr 99.0 1.4E-09 4.9E-14 86.7 10.3 53 22-75 40-97 (278)
88 2kjq_A DNAA-related protein; s 99.0 1.7E-10 5.8E-15 84.0 3.4 92 53-173 38-129 (149)
89 1tue_A Replication protein E1; 99.0 5.9E-10 2E-14 84.9 5.3 40 35-77 45-84 (212)
90 3f8t_A Predicted ATPase involv 98.9 2.2E-09 7.5E-14 91.2 6.1 142 13-170 205-350 (506)
91 1w5s_A Origin recognition comp 98.8 1.5E-08 5.1E-13 84.5 8.1 54 22-77 22-78 (412)
92 1u0j_A DNA replication protein 98.8 3.6E-08 1.2E-12 78.1 9.3 106 33-168 88-199 (267)
93 1jr3_D DNA polymerase III, del 98.5 3.3E-07 1.1E-11 75.0 8.8 98 51-168 18-116 (343)
94 2qen_A Walker-type ATPase; unk 98.4 1E-06 3.4E-11 71.5 9.8 43 22-74 12-54 (350)
95 2vhj_A Ntpase P4, P4; non- hyd 98.4 1.1E-06 3.7E-11 71.4 9.6 72 53-136 125-196 (331)
96 1g5t_A COB(I)alamin adenosyltr 98.4 2.6E-07 8.7E-12 69.9 5.2 111 53-176 30-170 (196)
97 2fna_A Conserved hypothetical 98.4 1.1E-06 3.6E-11 71.5 9.1 42 22-75 13-54 (357)
98 4akg_A Glutathione S-transfera 98.4 8.1E-07 2.8E-11 88.9 9.5 102 53-170 1269-1395(2695)
99 2b8t_A Thymidine kinase; deoxy 98.3 1.8E-06 6E-11 66.8 7.3 93 51-147 12-114 (223)
100 3upu_A ATP-dependent DNA helic 98.3 3.2E-06 1.1E-10 72.0 9.1 43 26-77 29-71 (459)
101 2orw_A Thymidine kinase; TMTK, 98.2 2.3E-06 7.9E-11 64.1 5.2 27 122-148 76-102 (184)
102 1ye8_A Protein THEP1, hypothet 98.1 1.4E-05 4.7E-10 59.5 8.6 24 53-76 2-25 (178)
103 3kl4_A SRP54, signal recogniti 98.0 0.00019 6.4E-09 60.7 14.8 49 29-77 70-123 (433)
104 2r2a_A Uncharacterized protein 98.0 6.1E-06 2.1E-10 62.7 4.8 26 50-75 4-29 (199)
105 3cmu_A Protein RECA, recombina 98.0 1.3E-05 4.3E-10 78.5 7.8 28 50-77 1426-1453(2050)
106 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.8E-05 9.5E-10 59.3 7.7 25 53-77 25-49 (235)
107 3e1s_A Exodeoxyribonuclease V, 97.9 2.9E-05 1E-09 68.0 8.7 86 53-149 206-306 (574)
108 3dm5_A SRP54, signal recogniti 97.9 0.00042 1.5E-08 58.6 15.3 28 50-77 99-126 (443)
109 1gvn_B Zeta; postsegregational 97.9 2.1E-05 7.1E-10 63.0 6.6 28 48-75 30-57 (287)
110 3vkg_A Dynein heavy chain, cyt 97.8 1.2E-05 4.2E-10 81.3 5.4 46 124-169 1376-1432(3245)
111 3e70_C DPA, signal recognition 97.8 0.00092 3.1E-08 54.4 15.1 28 50-77 128-155 (328)
112 3lw7_A Adenylate kinase relate 97.8 0.00015 5E-09 52.6 9.3 21 53-74 3-23 (179)
113 2fz4_A DNA repair protein RAD2 97.8 0.00015 5E-09 56.3 9.5 23 53-75 110-132 (237)
114 1qhx_A CPT, protein (chloramph 97.8 1.8E-05 6.2E-10 58.2 3.7 26 51-76 3-28 (178)
115 3hr8_A Protein RECA; alpha and 97.7 0.0002 7E-09 59.0 10.1 25 53-77 63-87 (356)
116 2zr9_A Protein RECA, recombina 97.7 0.0001 3.4E-09 60.7 8.2 25 53-77 63-87 (349)
117 1xx6_A Thymidine kinase; NESG, 97.7 4.2E-05 1.4E-09 57.6 5.4 89 51-148 8-107 (191)
118 2eyu_A Twitching motility prot 97.7 0.00019 6.3E-09 56.7 9.3 25 53-77 27-51 (261)
119 2rhm_A Putative kinase; P-loop 97.7 2.7E-05 9.3E-10 57.8 4.3 26 50-75 4-29 (193)
120 3jvv_A Twitching mobility prot 97.7 0.00012 4E-09 60.4 8.4 87 53-148 125-220 (356)
121 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.0012 4E-08 51.8 13.7 27 50-76 3-29 (260)
122 2cvh_A DNA repair and recombin 97.7 0.00012 4.2E-09 55.3 7.8 21 53-73 22-42 (220)
123 2dr3_A UPF0273 protein PH0284; 97.7 0.00014 4.9E-09 55.9 8.1 25 53-77 25-49 (247)
124 2p5t_B PEZT; postsegregational 97.7 5.7E-05 2E-09 59.1 5.7 29 48-76 29-57 (253)
125 2cdn_A Adenylate kinase; phosp 97.7 3.3E-05 1.1E-09 58.1 4.2 27 49-75 18-44 (201)
126 1u94_A RECA protein, recombina 97.7 0.00017 5.9E-09 59.4 8.7 25 53-77 65-89 (356)
127 2r8r_A Sensor protein; KDPD, P 97.7 7.2E-05 2.4E-09 57.7 5.9 26 52-77 7-32 (228)
128 3tlx_A Adenylate kinase 2; str 97.7 8.5E-05 2.9E-09 57.8 6.4 26 50-75 28-53 (243)
129 1ly1_A Polynucleotide kinase; 97.6 3.3E-05 1.1E-09 56.7 3.7 23 51-73 2-24 (181)
130 3trf_A Shikimate kinase, SK; a 97.6 3.5E-05 1.2E-09 57.0 3.8 25 52-76 6-30 (185)
131 3foz_A TRNA delta(2)-isopenten 97.6 0.00038 1.3E-08 56.2 10.0 27 50-76 9-35 (316)
132 1xp8_A RECA protein, recombina 97.6 0.00032 1.1E-08 58.0 9.8 25 53-77 76-100 (366)
133 1tev_A UMP-CMP kinase; ploop, 97.6 4.5E-05 1.5E-09 56.6 4.0 26 50-75 2-27 (196)
134 1aky_A Adenylate kinase; ATP:A 97.6 4.3E-05 1.5E-09 58.3 4.0 26 50-75 3-28 (220)
135 1kht_A Adenylate kinase; phosp 97.6 4.3E-05 1.5E-09 56.6 3.8 26 51-76 3-28 (192)
136 2vli_A Antibiotic resistance p 97.6 2.7E-05 9.2E-10 57.4 2.7 27 50-76 4-30 (183)
137 3kb2_A SPBC2 prophage-derived 97.6 4E-05 1.4E-09 55.8 3.4 23 53-75 3-25 (173)
138 3cm0_A Adenylate kinase; ATP-b 97.6 5E-05 1.7E-09 56.1 4.0 26 50-75 3-28 (186)
139 3vaa_A Shikimate kinase, SK; s 97.6 5.6E-05 1.9E-09 56.9 4.0 24 53-76 27-50 (199)
140 2c95_A Adenylate kinase 1; tra 97.6 5.4E-05 1.8E-09 56.3 3.8 26 50-75 8-33 (196)
141 3zvl_A Bifunctional polynucleo 97.5 0.00057 2E-08 57.4 10.5 26 50-75 257-282 (416)
142 3t61_A Gluconokinase; PSI-biol 97.5 5.4E-05 1.8E-09 56.9 3.7 26 50-75 17-42 (202)
143 1kag_A SKI, shikimate kinase I 97.5 5.1E-05 1.7E-09 55.4 3.4 24 53-76 6-29 (173)
144 3iij_A Coilin-interacting nucl 97.5 5.6E-05 1.9E-09 55.7 3.6 25 51-75 11-35 (180)
145 3uie_A Adenylyl-sulfate kinase 97.5 7.4E-05 2.5E-09 56.2 4.3 27 50-76 24-50 (200)
146 1w36_D RECD, exodeoxyribonucle 97.5 0.00053 1.8E-08 60.4 10.3 24 53-76 166-189 (608)
147 2plr_A DTMP kinase, probable t 97.5 7.1E-05 2.4E-09 56.3 4.1 27 51-77 4-30 (213)
148 1odf_A YGR205W, hypothetical 3 97.5 0.00021 7.1E-09 57.2 7.0 46 30-77 12-57 (290)
149 3tqc_A Pantothenate kinase; bi 97.5 0.00022 7.5E-09 57.9 7.0 29 48-76 89-117 (321)
150 3umf_A Adenylate kinase; rossm 97.5 8.4E-05 2.9E-09 57.1 4.3 27 49-75 27-53 (217)
151 1ukz_A Uridylate kinase; trans 97.5 7.9E-05 2.7E-09 55.9 4.1 27 49-75 13-39 (203)
152 1zak_A Adenylate kinase; ATP:A 97.5 6.1E-05 2.1E-09 57.6 3.4 27 50-76 4-30 (222)
153 1y63_A LMAJ004144AAA protein; 97.5 8.3E-05 2.8E-09 55.2 4.1 25 50-74 9-33 (184)
154 1via_A Shikimate kinase; struc 97.5 7E-05 2.4E-09 55.0 3.5 24 53-76 6-29 (175)
155 1ak2_A Adenylate kinase isoenz 97.5 8.6E-05 2.9E-09 57.3 4.1 27 50-76 15-41 (233)
156 1nn5_A Similar to deoxythymidy 97.5 8.1E-05 2.8E-09 56.2 3.8 28 50-77 8-35 (215)
157 1zd8_A GTP:AMP phosphotransfer 97.5 6.6E-05 2.3E-09 57.6 3.3 26 50-75 6-31 (227)
158 1qf9_A UMP/CMP kinase, protein 97.5 0.0001 3.5E-09 54.5 4.3 26 50-75 5-30 (194)
159 1nks_A Adenylate kinase; therm 97.5 6.8E-05 2.3E-09 55.5 3.3 25 53-77 3-27 (194)
160 3exa_A TRNA delta(2)-isopenten 97.5 0.00045 1.6E-08 55.9 8.2 26 51-76 3-28 (322)
161 3cmw_A Protein RECA, recombina 97.5 0.00017 5.7E-09 69.9 6.6 24 53-76 1084-1107(1706)
162 2wwf_A Thymidilate kinase, put 97.5 8.9E-05 3E-09 55.9 3.9 28 50-77 9-36 (212)
163 2bwj_A Adenylate kinase 5; pho 97.4 8.6E-05 2.9E-09 55.3 3.6 26 51-76 12-37 (199)
164 2qor_A Guanylate kinase; phosp 97.4 7.6E-05 2.6E-09 56.3 3.3 26 50-75 11-36 (204)
165 4akg_A Glutathione S-transfera 97.4 0.0024 8.1E-08 64.6 14.5 109 24-151 1588-1696(2695)
166 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00025 8.6E-09 58.3 6.5 47 26-76 3-49 (359)
167 4eun_A Thermoresistant glucoki 97.4 0.00011 3.7E-09 55.3 4.0 25 51-75 29-53 (200)
168 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.0009 3.1E-08 54.5 9.6 25 53-77 173-197 (330)
169 1zp6_A Hypothetical protein AT 97.4 0.0001 3.5E-09 54.7 3.6 25 50-74 8-32 (191)
170 3be4_A Adenylate kinase; malar 97.4 8.6E-05 2.9E-09 56.6 3.2 26 50-75 4-29 (217)
171 1rz3_A Hypothetical protein rb 97.4 0.00031 1E-08 52.9 6.2 28 50-77 21-48 (201)
172 2j37_W Signal recognition part 97.4 0.0082 2.8E-07 51.6 15.8 48 30-77 75-127 (504)
173 2iyv_A Shikimate kinase, SK; t 97.4 9E-05 3.1E-09 54.7 3.2 24 53-76 4-27 (184)
174 1knq_A Gluconate kinase; ALFA/ 97.4 0.00015 5.1E-09 53.1 4.3 25 51-75 8-32 (175)
175 2v54_A DTMP kinase, thymidylat 97.4 0.00011 3.6E-09 55.1 3.6 26 50-75 3-28 (204)
176 2v3c_C SRP54, signal recogniti 97.4 0.0046 1.6E-07 52.2 14.0 28 50-77 98-125 (432)
177 2yvu_A Probable adenylyl-sulfa 97.4 0.00016 5.6E-09 53.5 4.5 28 50-77 12-39 (186)
178 3llm_A ATP-dependent RNA helic 97.4 0.0018 6.3E-08 49.7 10.6 20 53-72 78-97 (235)
179 3tau_A Guanylate kinase, GMP k 97.4 0.00012 4.1E-09 55.5 3.7 26 50-75 7-32 (208)
180 1e6c_A Shikimate kinase; phosp 97.4 0.00012 4.1E-09 53.4 3.5 24 53-76 4-27 (173)
181 1zuh_A Shikimate kinase; alpha 97.4 0.00013 4.5E-09 53.0 3.7 24 53-76 9-32 (168)
182 3c8u_A Fructokinase; YP_612366 97.4 0.00015 5.2E-09 54.9 4.1 28 50-77 21-48 (208)
183 2ewv_A Twitching motility prot 97.4 0.00061 2.1E-08 56.4 8.1 25 53-77 138-162 (372)
184 3a8t_A Adenylate isopentenyltr 97.3 0.0004 1.4E-08 56.7 6.7 27 50-76 39-65 (339)
185 2bbw_A Adenylate kinase 4, AK4 97.3 0.00014 4.8E-09 56.4 4.0 26 50-75 26-51 (246)
186 1kgd_A CASK, peripheral plasma 97.3 0.00016 5.3E-09 53.6 4.0 23 53-75 7-29 (180)
187 3r20_A Cytidylate kinase; stru 97.3 0.00014 4.7E-09 56.5 3.8 26 50-75 8-33 (233)
188 3b9q_A Chloroplast SRP recepto 97.3 0.00058 2E-08 54.9 7.6 28 50-77 99-126 (302)
189 3fb4_A Adenylate kinase; psych 97.3 0.00012 4.2E-09 55.4 3.4 23 53-75 2-24 (216)
190 2ze6_A Isopentenyl transferase 97.3 0.00012 4.2E-09 57.3 3.5 24 53-76 3-26 (253)
191 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.9E-09 55.6 3.2 23 53-75 2-24 (216)
192 2z43_A DNA repair and recombin 97.3 0.00033 1.1E-08 56.8 6.0 23 53-75 109-131 (324)
193 1j8m_F SRP54, signal recogniti 97.3 0.0091 3.1E-07 47.8 14.4 27 51-77 98-124 (297)
194 2j9r_A Thymidine kinase; TK1, 97.3 0.00024 8E-09 54.4 4.7 27 51-77 28-54 (214)
195 1cke_A CK, MSSA, protein (cyti 97.3 0.00018 6.1E-09 54.8 4.1 25 51-75 5-29 (227)
196 2pez_A Bifunctional 3'-phospho 97.3 0.0002 6.7E-09 52.7 4.1 28 50-77 4-31 (179)
197 3sr0_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 55.0 3.7 23 53-75 2-24 (206)
198 2jaq_A Deoxyguanosine kinase; 97.3 0.00015 5.2E-09 54.1 3.5 24 53-76 2-25 (205)
199 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.2E-09 54.3 3.4 25 51-75 6-30 (207)
200 1uf9_A TT1252 protein; P-loop, 97.3 0.00018 6.3E-09 53.7 3.8 26 49-74 6-31 (203)
201 2pt5_A Shikimate kinase, SK; a 97.3 0.00017 6E-09 52.2 3.5 24 53-76 2-25 (168)
202 1uj2_A Uridine-cytidine kinase 97.3 0.00019 6.6E-09 55.9 4.0 28 49-76 20-47 (252)
203 3cmu_A Protein RECA, recombina 97.3 0.00058 2E-08 67.1 7.8 25 53-77 1083-1107(2050)
204 2og2_A Putative signal recogni 97.2 0.00086 2.9E-08 55.3 7.7 28 50-77 156-183 (359)
205 1bif_A 6-phosphofructo-2-kinas 97.2 0.0054 1.9E-07 52.2 12.7 28 50-77 38-65 (469)
206 3tr0_A Guanylate kinase, GMP k 97.2 0.00026 9E-09 53.0 4.0 24 52-75 8-31 (205)
207 3p32_A Probable GTPase RV1496/ 97.2 0.0037 1.3E-07 51.2 11.3 28 50-77 78-105 (355)
208 2z0h_A DTMP kinase, thymidylat 97.2 0.00022 7.4E-09 53.0 3.4 24 53-76 2-25 (197)
209 2xxa_A Signal recognition part 97.2 0.0077 2.6E-07 50.8 13.3 28 50-77 99-126 (433)
210 2pbr_A DTMP kinase, thymidylat 97.2 0.00022 7.5E-09 52.8 3.4 24 53-76 2-25 (195)
211 2px0_A Flagellar biosynthesis 97.2 0.00056 1.9E-08 54.9 6.0 28 50-77 104-131 (296)
212 1m7g_A Adenylylsulfate kinase; 97.2 0.00031 1.1E-08 53.2 4.3 27 50-76 24-50 (211)
213 1w4r_A Thymidine kinase; type 97.2 0.0012 4E-08 49.7 7.2 25 53-77 22-47 (195)
214 3eph_A TRNA isopentenyltransfe 97.2 0.0013 4.5E-08 54.9 8.2 24 53-76 4-27 (409)
215 2xb4_A Adenylate kinase; ATP-b 97.2 0.00024 8.2E-09 54.4 3.5 23 53-75 2-24 (223)
216 3lda_A DNA repair protein RAD5 97.2 0.0014 4.8E-08 54.8 8.4 22 53-74 180-201 (400)
217 1zu4_A FTSY; GTPase, signal re 97.2 0.0013 4.5E-08 53.3 7.9 28 50-77 104-131 (320)
218 1e4v_A Adenylate kinase; trans 97.2 0.00023 7.7E-09 54.0 3.2 23 53-75 2-24 (214)
219 2bdt_A BH3686; alpha-beta prot 97.1 0.00024 8.3E-09 52.7 3.2 22 53-74 4-25 (189)
220 3nwj_A ATSK2; P loop, shikimat 97.1 0.00042 1.4E-08 54.3 4.6 44 26-76 30-73 (250)
221 3asz_A Uridine kinase; cytidin 97.1 0.00032 1.1E-08 52.9 3.9 27 50-76 5-31 (211)
222 1nrj_B SR-beta, signal recogni 97.1 0.0054 1.8E-07 46.0 10.8 27 50-76 11-37 (218)
223 3cmw_A Protein RECA, recombina 97.1 0.0016 5.4E-08 63.3 9.3 25 53-77 734-758 (1706)
224 3crm_A TRNA delta(2)-isopenten 97.1 0.00034 1.2E-08 56.8 4.1 26 51-76 5-30 (323)
225 3aez_A Pantothenate kinase; tr 97.1 0.00098 3.3E-08 53.9 6.7 28 50-77 89-116 (312)
226 3a00_A Guanylate kinase, GMP k 97.1 0.00026 8.9E-09 52.6 3.0 24 53-76 3-26 (186)
227 1vht_A Dephospho-COA kinase; s 97.1 0.00043 1.5E-08 52.6 4.0 24 50-73 3-26 (218)
228 1ltq_A Polynucleotide kinase; 97.1 0.00036 1.2E-08 55.6 3.7 24 51-74 2-25 (301)
229 4b3f_X DNA-binding protein smu 97.1 0.00059 2E-08 60.4 5.4 25 53-77 207-231 (646)
230 1jjv_A Dephospho-COA kinase; P 97.0 0.00033 1.1E-08 52.6 3.2 21 53-73 4-24 (206)
231 3ney_A 55 kDa erythrocyte memb 97.0 0.00051 1.7E-08 51.9 4.1 25 51-75 19-43 (197)
232 1sq5_A Pantothenate kinase; P- 97.0 0.0013 4.4E-08 52.9 6.7 27 50-76 79-105 (308)
233 4eaq_A DTMP kinase, thymidylat 97.0 0.00058 2E-08 52.6 4.4 27 50-76 25-51 (229)
234 2yhs_A FTSY, cell division pro 97.0 0.0026 9E-08 54.5 8.8 49 29-77 266-319 (503)
235 2qt1_A Nicotinamide riboside k 97.0 0.00034 1.2E-08 52.7 2.9 26 50-75 20-45 (207)
236 2f6r_A COA synthase, bifunctio 97.0 0.00048 1.6E-08 54.8 3.9 25 49-73 73-97 (281)
237 1svm_A Large T antigen; AAA+ f 97.0 0.001 3.5E-08 55.2 6.0 26 50-75 168-193 (377)
238 1lvg_A Guanylate kinase, GMP k 97.0 0.00041 1.4E-08 52.1 3.3 23 53-75 6-28 (198)
239 1vma_A Cell division protein F 97.0 0.002 6.9E-08 51.9 7.5 28 50-77 103-130 (306)
240 4e22_A Cytidylate kinase; P-lo 97.0 0.00053 1.8E-08 53.6 4.0 24 52-75 28-51 (252)
241 1ex7_A Guanylate kinase; subst 97.0 0.00046 1.6E-08 51.6 3.4 22 54-75 4-25 (186)
242 1z6t_A APAF-1, apoptotic prote 97.0 0.00061 2.1E-08 59.4 4.5 46 22-73 124-169 (591)
243 3h1t_A Type I site-specific re 96.9 0.0016 5.4E-08 56.9 7.0 25 53-77 200-224 (590)
244 2if2_A Dephospho-COA kinase; a 96.9 0.00043 1.5E-08 51.9 3.0 21 53-73 3-23 (204)
245 2jeo_A Uridine-cytidine kinase 96.9 0.00073 2.5E-08 52.4 4.2 26 50-75 24-49 (245)
246 3io5_A Recombination and repai 96.9 0.0025 8.5E-08 51.7 7.4 24 53-76 30-53 (333)
247 3ake_A Cytidylate kinase; CMP 96.9 0.00067 2.3E-08 50.8 3.7 23 53-75 4-26 (208)
248 1gtv_A TMK, thymidylate kinase 96.9 0.00025 8.7E-09 53.4 1.3 25 53-77 2-26 (214)
249 3vkw_A Replicase large subunit 96.9 0.0008 2.7E-08 56.9 4.3 26 123-148 235-260 (446)
250 1g8f_A Sulfate adenylyltransfe 96.9 0.0017 5.9E-08 55.9 6.4 63 8-76 353-420 (511)
251 2h92_A Cytidylate kinase; ross 96.8 0.00064 2.2E-08 51.5 3.3 25 51-75 3-27 (219)
252 2orv_A Thymidine kinase; TP4A 96.8 0.0029 1E-07 48.8 6.9 26 52-77 20-45 (234)
253 2qmh_A HPR kinase/phosphorylas 96.8 0.0006 2.1E-08 51.6 2.9 25 52-76 35-59 (205)
254 4gp7_A Metallophosphoesterase; 96.8 0.0011 3.6E-08 48.6 4.1 17 53-69 11-27 (171)
255 1a7j_A Phosphoribulokinase; tr 96.8 0.00046 1.6E-08 55.2 2.2 27 50-76 4-30 (290)
256 1q3t_A Cytidylate kinase; nucl 96.8 0.001 3.4E-08 51.3 4.1 26 50-75 15-40 (236)
257 2ocp_A DGK, deoxyguanosine kin 96.8 0.00085 2.9E-08 51.8 3.6 26 51-76 2-27 (241)
258 1znw_A Guanylate kinase, GMP k 96.8 0.00093 3.2E-08 50.4 3.7 23 53-75 22-44 (207)
259 3d3q_A TRNA delta(2)-isopenten 96.8 0.00093 3.2E-08 54.6 3.8 25 52-76 8-32 (340)
260 1z6g_A Guanylate kinase; struc 96.8 0.0008 2.7E-08 51.4 3.2 23 53-75 25-47 (218)
261 1rj9_A FTSY, signal recognitio 96.8 0.0011 3.8E-08 53.3 4.2 27 51-77 102-128 (304)
262 2gxq_A Heat resistant RNA depe 96.8 0.012 4E-07 43.8 9.7 18 53-70 40-57 (207)
263 1xjc_A MOBB protein homolog; s 96.8 0.0011 3.9E-08 48.7 3.8 25 53-77 6-30 (169)
264 1htw_A HI0065; nucleotide-bind 96.8 0.0012 4.3E-08 47.9 4.0 24 53-77 35-58 (158)
265 2axn_A 6-phosphofructo-2-kinas 96.7 0.0011 3.7E-08 57.3 4.3 27 50-76 34-60 (520)
266 1s96_A Guanylate kinase, GMP k 96.7 0.0011 3.8E-08 50.7 3.7 24 53-76 18-41 (219)
267 2a5y_B CED-4; apoptosis; HET: 96.7 0.0025 8.7E-08 55.2 6.4 44 25-73 131-174 (549)
268 1rif_A DAR protein, DNA helica 96.7 0.0074 2.5E-07 47.5 8.6 23 54-76 131-153 (282)
269 2ehv_A Hypothetical protein PH 96.7 0.00093 3.2E-08 51.4 3.1 22 53-74 32-53 (251)
270 3lnc_A Guanylate kinase, GMP k 96.7 0.00071 2.4E-08 51.9 2.3 23 53-75 29-52 (231)
271 4a74_A DNA repair and recombin 96.7 0.00088 3E-08 50.8 2.8 24 53-76 27-50 (231)
272 2i3b_A HCR-ntpase, human cance 96.7 0.0012 4.2E-08 49.3 3.5 24 53-76 3-26 (189)
273 4edh_A DTMP kinase, thymidylat 96.6 0.0016 5.3E-08 49.7 4.1 28 50-77 5-32 (213)
274 2grj_A Dephospho-COA kinase; T 96.6 0.0012 4.1E-08 49.5 3.3 23 53-75 14-36 (192)
275 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0018 6.2E-08 49.5 4.3 27 122-148 101-127 (219)
276 1hv8_A Putative ATP-dependent 96.6 0.013 4.3E-07 47.3 9.6 23 53-75 46-68 (367)
277 3ld9_A DTMP kinase, thymidylat 96.6 0.0019 6.5E-08 49.7 4.2 28 50-77 20-47 (223)
278 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.4E-08 50.4 3.3 22 53-74 26-47 (243)
279 2v9p_A Replication protein E1; 96.6 0.0028 9.5E-08 51.1 5.2 23 53-75 128-150 (305)
280 1p5z_B DCK, deoxycytidine kina 96.6 0.00062 2.1E-08 53.3 1.3 26 50-75 23-48 (263)
281 3vkg_A Dynein heavy chain, cyt 96.5 0.014 5E-07 59.8 11.1 109 24-151 1625-1733(3245)
282 3v9p_A DTMP kinase, thymidylat 96.5 0.0014 4.8E-08 50.5 3.1 28 50-77 24-51 (227)
283 1m8p_A Sulfate adenylyltransfe 96.5 0.0021 7.1E-08 56.2 4.4 29 49-77 394-422 (573)
284 1vec_A ATP-dependent RNA helic 96.5 0.014 4.7E-07 43.4 8.5 18 53-70 42-59 (206)
285 1x6v_B Bifunctional 3'-phospho 96.5 0.0022 7.6E-08 56.6 4.4 28 50-77 51-78 (630)
286 3lv8_A DTMP kinase, thymidylat 96.5 0.002 6.9E-08 50.0 3.7 28 50-77 26-53 (236)
287 2wsm_A Hydrogenase expression/ 96.5 0.0042 1.4E-07 46.8 5.4 25 52-76 31-55 (221)
288 3tqf_A HPR(Ser) kinase; transf 96.5 0.002 6.8E-08 47.6 3.4 23 52-74 17-39 (181)
289 2v6i_A RNA helicase; membrane, 96.5 0.0072 2.5E-07 50.8 7.3 20 53-72 4-24 (431)
290 3tmk_A Thymidylate kinase; pho 96.4 0.0023 7.9E-08 48.9 3.8 28 50-77 4-31 (216)
291 2qm8_A GTPase/ATPase; G protei 96.4 0.016 5.4E-07 47.2 8.9 28 50-77 54-81 (337)
292 1np6_A Molybdopterin-guanine d 96.4 0.0024 8.4E-08 47.1 3.7 25 53-77 8-32 (174)
293 2oca_A DAR protein, ATP-depend 96.4 0.022 7.4E-07 48.5 10.1 24 53-76 130-153 (510)
294 2eyq_A TRCF, transcription-rep 96.4 0.026 8.8E-07 53.3 11.3 25 50-74 623-647 (1151)
295 3kta_A Chromosome segregation 96.4 0.0021 7.3E-08 47.1 3.3 25 53-77 28-52 (182)
296 1tq4_A IIGP1, interferon-induc 96.4 0.0042 1.4E-07 52.1 5.5 24 53-76 71-94 (413)
297 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0047 1.6E-07 52.6 5.7 24 53-76 153-176 (473)
298 2ged_A SR-beta, signal recogni 96.4 0.0044 1.5E-07 45.5 4.9 25 50-74 47-71 (193)
299 1tf7_A KAIC; homohexamer, hexa 96.3 0.017 5.9E-07 49.8 9.1 25 53-77 283-307 (525)
300 1nlf_A Regulatory protein REPA 96.3 0.0025 8.5E-08 50.3 3.4 24 53-76 32-55 (279)
301 4tmk_A Protein (thymidylate ki 96.3 0.003 1E-07 48.2 3.7 27 51-77 3-29 (213)
302 3tif_A Uncharacterized ABC tra 96.3 0.002 6.7E-08 49.9 2.7 25 53-77 33-57 (235)
303 2f1r_A Molybdopterin-guanine d 96.3 0.0015 5.3E-08 48.0 2.0 25 53-77 4-28 (171)
304 2xau_A PRE-mRNA-splicing facto 96.3 0.027 9.4E-07 50.9 10.5 20 53-72 111-130 (773)
305 3gmt_A Adenylate kinase; ssgci 96.3 0.0028 9.7E-08 48.9 3.5 24 53-76 10-33 (230)
306 1q57_A DNA primase/helicase; d 96.3 0.015 5.1E-07 49.8 8.4 25 53-77 244-268 (503)
307 2hf9_A Probable hydrogenase ni 96.3 0.0087 3E-07 45.2 6.2 27 51-77 38-64 (226)
308 2pcj_A ABC transporter, lipopr 96.3 0.0019 6.6E-08 49.5 2.6 25 53-77 32-56 (224)
309 2onk_A Molybdate/tungstate ABC 96.3 0.0024 8.1E-08 49.6 3.1 25 53-77 26-50 (240)
310 1cr0_A DNA primase/helicase; R 96.3 0.0024 8.3E-08 50.7 3.2 25 53-77 37-61 (296)
311 1z2a_A RAS-related protein RAB 96.3 0.0034 1.1E-07 44.7 3.6 26 50-75 4-29 (168)
312 3cr8_A Sulfate adenylyltranfer 96.2 0.0022 7.4E-08 55.9 2.9 28 50-77 368-395 (552)
313 3b85_A Phosphate starvation-in 96.2 0.0019 6.6E-08 49.0 2.2 24 53-77 24-47 (208)
314 1lw7_A Transcriptional regulat 96.2 0.0029 9.9E-08 52.0 3.4 25 53-77 172-196 (365)
315 3sop_A Neuronal-specific septi 96.2 0.0032 1.1E-07 49.8 3.5 25 53-77 4-28 (270)
316 2gk6_A Regulator of nonsense t 96.2 0.0053 1.8E-07 54.2 5.2 25 53-77 197-221 (624)
317 2cbz_A Multidrug resistance-as 96.2 0.0022 7.6E-08 49.6 2.5 25 53-77 33-57 (237)
318 3pey_A ATP-dependent RNA helic 96.2 0.023 8E-07 46.1 8.7 21 53-73 46-66 (395)
319 2ffh_A Protein (FFH); SRP54, s 96.1 0.01 3.6E-07 49.9 6.5 28 50-77 97-124 (425)
320 1b0u_A Histidine permease; ABC 96.1 0.0027 9.2E-08 49.9 2.8 25 53-77 34-58 (262)
321 1kao_A RAP2A; GTP-binding prot 96.1 0.0045 1.5E-07 43.9 3.7 24 51-74 3-26 (167)
322 2nzj_A GTP-binding protein REM 96.1 0.0044 1.5E-07 44.5 3.7 24 51-74 4-27 (175)
323 2oap_1 GSPE-2, type II secreti 96.1 0.004 1.4E-07 53.7 3.9 25 53-77 262-286 (511)
324 1sgw_A Putative ABC transporte 96.1 0.0026 9E-08 48.5 2.5 25 53-77 37-61 (214)
325 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0035 1.2E-07 48.9 3.2 22 53-74 31-52 (250)
326 1oix_A RAS-related protein RAB 96.1 0.0034 1.1E-07 46.5 3.0 25 52-76 30-54 (191)
327 2f9l_A RAB11B, member RAS onco 96.1 0.0038 1.3E-07 46.3 3.2 24 52-75 6-29 (199)
328 3fdi_A Uncharacterized protein 96.1 0.0043 1.5E-07 46.8 3.5 25 53-77 8-32 (201)
329 3gfo_A Cobalt import ATP-bindi 96.1 0.0028 9.5E-08 50.3 2.5 25 53-77 36-60 (275)
330 2zu0_C Probable ATP-dependent 96.1 0.0034 1.2E-07 49.5 3.1 23 53-75 48-70 (267)
331 1g6h_A High-affinity branched- 96.1 0.003 1E-07 49.5 2.7 25 53-77 35-59 (257)
332 1p9r_A General secretion pathw 96.0 0.0038 1.3E-07 52.4 3.5 25 53-77 169-193 (418)
333 3fvq_A Fe(3+) IONS import ATP- 96.0 0.003 1E-07 52.0 2.8 25 53-77 32-56 (359)
334 4g1u_C Hemin import ATP-bindin 96.0 0.0029 1E-07 49.8 2.5 25 53-77 39-63 (266)
335 3thx_A DNA mismatch repair pro 96.0 0.03 1E-06 51.7 9.5 22 53-74 664-685 (934)
336 1ji0_A ABC transporter; ATP bi 96.0 0.0032 1.1E-07 48.8 2.7 25 53-77 34-58 (240)
337 2ff7_A Alpha-hemolysin translo 96.0 0.0029 1E-07 49.3 2.5 25 53-77 37-61 (247)
338 2olj_A Amino acid ABC transpor 96.0 0.0033 1.1E-07 49.5 2.8 25 53-77 52-76 (263)
339 2vp4_A Deoxynucleoside kinase; 96.0 0.0027 9.3E-08 48.7 2.2 25 50-74 19-43 (230)
340 2wjg_A FEOB, ferrous iron tran 96.0 0.0057 2E-07 44.6 3.9 25 50-74 6-30 (188)
341 2gza_A Type IV secretion syste 96.0 0.0057 2E-07 50.3 4.3 25 53-77 177-201 (361)
342 3sfz_A APAF-1, apoptotic pepti 96.0 0.0054 1.9E-07 57.5 4.6 46 23-74 125-170 (1249)
343 1mv5_A LMRA, multidrug resista 96.0 0.0043 1.5E-07 48.1 3.3 25 53-77 30-54 (243)
344 2pze_A Cystic fibrosis transme 96.0 0.0032 1.1E-07 48.4 2.5 25 53-77 36-60 (229)
345 1ky3_A GTP-binding protein YPT 96.0 0.0055 1.9E-07 44.2 3.7 25 50-74 7-31 (182)
346 1yrb_A ATP(GTP)binding protein 96.0 0.007 2.4E-07 46.8 4.5 28 49-76 12-39 (262)
347 2qi9_C Vitamin B12 import ATP- 96.0 0.0033 1.1E-07 49.1 2.5 25 53-77 28-52 (249)
348 2ce2_X GTPase HRAS; signaling 96.0 0.0052 1.8E-07 43.4 3.4 24 52-75 4-27 (166)
349 2wji_A Ferrous iron transport 96.0 0.0052 1.8E-07 44.1 3.5 22 53-74 5-26 (165)
350 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0049 1.7E-07 44.8 3.3 26 50-75 3-28 (189)
351 3rlf_A Maltose/maltodextrin im 95.9 0.0039 1.3E-07 51.7 3.1 25 53-77 31-55 (381)
352 1vpl_A ABC transporter, ATP-bi 95.9 0.0037 1.3E-07 49.0 2.8 25 53-77 43-67 (256)
353 1z47_A CYSA, putative ABC-tran 95.9 0.0039 1.3E-07 51.3 3.0 25 53-77 43-67 (355)
354 2zts_A Putative uncharacterize 95.9 0.0048 1.6E-07 47.2 3.4 22 53-74 32-53 (251)
355 2dyk_A GTP-binding protein; GT 95.9 0.0049 1.7E-07 43.6 3.2 22 53-74 3-24 (161)
356 2hxs_A RAB-26, RAS-related pro 95.9 0.0067 2.3E-07 43.7 4.0 25 50-74 5-29 (178)
357 1u8z_A RAS-related protein RAL 95.9 0.0067 2.3E-07 43.0 3.9 24 51-74 4-27 (168)
358 1z08_A RAS-related protein RAB 95.9 0.0052 1.8E-07 43.9 3.3 25 50-74 5-29 (170)
359 2it1_A 362AA long hypothetical 95.9 0.0041 1.4E-07 51.3 3.1 25 53-77 31-55 (362)
360 2zej_A Dardarin, leucine-rich 95.9 0.0037 1.3E-07 45.8 2.5 21 53-73 4-24 (184)
361 2ihy_A ABC transporter, ATP-bi 95.9 0.0035 1.2E-07 49.8 2.5 25 53-77 49-73 (279)
362 2ixe_A Antigen peptide transpo 95.9 0.0035 1.2E-07 49.6 2.5 25 53-77 47-71 (271)
363 2yyz_A Sugar ABC transporter, 95.9 0.0041 1.4E-07 51.2 3.0 25 53-77 31-55 (359)
364 1g16_A RAS-related protein SEC 95.9 0.0056 1.9E-07 43.6 3.4 24 51-74 3-26 (170)
365 1upt_A ARL1, ADP-ribosylation 95.9 0.0068 2.3E-07 43.3 3.9 25 50-74 6-30 (171)
366 1v43_A Sugar-binding transport 95.9 0.0043 1.5E-07 51.3 3.1 25 53-77 39-63 (372)
367 2yz2_A Putative ABC transporte 95.9 0.004 1.4E-07 49.1 2.7 25 53-77 35-59 (266)
368 3thx_B DNA mismatch repair pro 95.9 0.031 1.1E-06 51.5 8.8 22 53-74 675-696 (918)
369 2lkc_A Translation initiation 95.9 0.0072 2.4E-07 43.5 3.9 25 50-74 7-31 (178)
370 3hdt_A Putative kinase; struct 95.9 0.0073 2.5E-07 46.3 4.1 27 51-77 14-40 (223)
371 2wjy_A Regulator of nonsense t 95.9 0.0088 3E-07 54.3 5.2 25 53-77 373-397 (800)
372 2ghi_A Transport protein; mult 95.9 0.0048 1.6E-07 48.4 3.1 24 53-76 48-71 (260)
373 2erx_A GTP-binding protein DI- 95.8 0.0064 2.2E-07 43.3 3.5 24 51-74 3-26 (172)
374 2nq2_C Hypothetical ABC transp 95.8 0.0042 1.4E-07 48.6 2.7 25 53-77 33-57 (253)
375 1g29_1 MALK, maltose transport 95.8 0.0045 1.5E-07 51.2 3.0 25 53-77 31-55 (372)
376 2o8b_B DNA mismatch repair pro 95.8 0.044 1.5E-06 51.1 9.8 22 52-73 790-811 (1022)
377 3bc1_A RAS-related protein RAB 95.8 0.0064 2.2E-07 44.3 3.5 25 50-74 10-34 (195)
378 1c1y_A RAS-related protein RAP 95.8 0.0069 2.4E-07 43.0 3.6 23 52-74 4-26 (167)
379 3clv_A RAB5 protein, putative; 95.8 0.0086 3E-07 43.8 4.3 25 50-74 6-30 (208)
380 3d31_A Sulfate/molybdate ABC t 95.8 0.0036 1.2E-07 51.3 2.3 25 53-77 28-52 (348)
381 2gks_A Bifunctional SAT/APS ki 95.8 0.0062 2.1E-07 52.9 3.9 28 50-77 371-398 (546)
382 2fn4_A P23, RAS-related protei 95.8 0.007 2.4E-07 43.6 3.7 25 50-74 8-32 (181)
383 1ek0_A Protein (GTP-binding pr 95.8 0.0059 2E-07 43.4 3.1 23 52-74 4-26 (170)
384 2pjz_A Hypothetical protein ST 95.8 0.0044 1.5E-07 48.8 2.5 24 53-77 32-55 (263)
385 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0057 2E-07 44.0 3.0 24 51-74 7-30 (177)
386 1fzq_A ADP-ribosylation factor 95.8 0.007 2.4E-07 44.2 3.4 25 50-74 15-39 (181)
387 1pzn_A RAD51, DNA repair and r 95.7 0.0068 2.3E-07 49.6 3.7 23 53-75 133-155 (349)
388 2fwr_A DNA repair protein RAD2 95.7 0.026 8.9E-07 47.5 7.5 23 53-75 110-132 (472)
389 1z0j_A RAB-22, RAS-related pro 95.7 0.0065 2.2E-07 43.3 3.2 25 51-75 6-30 (170)
390 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0099 3.4E-07 42.5 4.1 25 53-77 25-49 (149)
391 1s2m_A Putative ATP-dependent 95.7 0.083 2.8E-06 43.1 10.3 22 53-74 60-81 (400)
392 2gj8_A MNME, tRNA modification 95.7 0.0069 2.4E-07 43.9 3.3 24 51-74 4-27 (172)
393 4hlc_A DTMP kinase, thymidylat 95.7 0.0073 2.5E-07 45.6 3.5 23 54-76 5-27 (205)
394 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0073 2.5E-07 44.1 3.4 26 50-75 6-31 (184)
395 1v5w_A DMC1, meiotic recombina 95.7 0.0092 3.1E-07 48.7 4.2 23 53-75 124-146 (343)
396 1moz_A ARL1, ADP-ribosylation 95.7 0.0051 1.8E-07 44.6 2.5 23 50-72 17-39 (183)
397 3l9o_A ATP-dependent RNA helic 95.7 0.071 2.4E-06 50.1 10.7 22 53-74 201-222 (1108)
398 1ls1_A Signal recognition part 95.7 0.0093 3.2E-07 47.6 4.1 28 50-77 97-124 (295)
399 3gd7_A Fusion complex of cysti 95.7 0.0054 1.8E-07 51.1 2.8 23 53-75 49-71 (390)
400 3cph_A RAS-related protein SEC 95.7 0.0085 2.9E-07 44.6 3.7 24 51-74 20-43 (213)
401 3hjn_A DTMP kinase, thymidylat 95.6 0.0081 2.8E-07 45.1 3.5 24 54-77 3-26 (197)
402 2oil_A CATX-8, RAS-related pro 95.6 0.0085 2.9E-07 43.9 3.5 24 51-74 25-48 (193)
403 2g6b_A RAS-related protein RAB 95.6 0.0083 2.8E-07 43.3 3.4 25 50-74 9-33 (180)
404 1oxx_K GLCV, glucose, ABC tran 95.6 0.0037 1.3E-07 51.4 1.6 25 53-77 33-57 (353)
405 1r2q_A RAS-related protein RAB 95.6 0.0077 2.6E-07 42.8 3.1 24 51-74 6-29 (170)
406 3q85_A GTP-binding protein REM 95.6 0.0073 2.5E-07 43.1 3.0 21 53-73 4-24 (169)
407 2www_A Methylmalonic aciduria 95.6 0.034 1.1E-06 45.4 7.3 26 51-76 74-99 (349)
408 4a4z_A Antiviral helicase SKI2 95.6 0.14 4.8E-06 47.6 12.1 22 53-74 56-77 (997)
409 2y8e_A RAB-protein 6, GH09086P 95.6 0.0076 2.6E-07 43.3 3.1 23 52-74 15-37 (179)
410 3q72_A GTP-binding protein RAD 95.6 0.0064 2.2E-07 43.2 2.6 21 53-73 4-24 (166)
411 1h65_A Chloroplast outer envel 95.6 0.023 7.8E-07 44.5 6.0 25 50-74 38-62 (270)
412 3con_A GTPase NRAS; structural 95.6 0.0079 2.7E-07 44.0 3.1 24 52-75 22-45 (190)
413 1r8s_A ADP-ribosylation factor 95.6 0.0083 2.8E-07 42.5 3.2 22 54-75 3-24 (164)
414 2efe_B Small GTP-binding prote 95.6 0.0087 3E-07 43.2 3.3 24 51-74 12-35 (181)
415 2p67_A LAO/AO transport system 95.6 0.017 5.8E-07 47.0 5.4 27 50-76 55-81 (341)
416 3tw8_B RAS-related protein RAB 95.6 0.0082 2.8E-07 43.2 3.1 24 51-74 9-32 (181)
417 2atv_A RERG, RAS-like estrogen 95.5 0.011 3.7E-07 43.6 3.9 25 50-74 27-51 (196)
418 2bov_A RAla, RAS-related prote 95.5 0.011 3.8E-07 43.6 3.9 24 51-74 14-37 (206)
419 2i1q_A DNA repair and recombin 95.5 0.0093 3.2E-07 48.0 3.7 23 53-75 100-122 (322)
420 3kkq_A RAS-related protein M-R 95.5 0.012 4E-07 42.7 3.9 25 51-75 18-42 (183)
421 1c9k_A COBU, adenosylcobinamid 95.5 0.0074 2.5E-07 44.8 2.8 21 54-74 2-22 (180)
422 1z0f_A RAB14, member RAS oncog 95.5 0.01 3.4E-07 42.6 3.5 25 51-75 15-39 (179)
423 1z06_A RAS-related protein RAB 95.5 0.011 3.6E-07 43.3 3.7 25 50-74 19-43 (189)
424 3lxx_A GTPase IMAP family memb 95.5 0.0093 3.2E-07 45.7 3.5 25 50-74 28-52 (239)
425 1svi_A GTP-binding protein YSX 95.5 0.009 3.1E-07 43.8 3.3 24 51-74 23-46 (195)
426 2a9k_A RAS-related protein RAL 95.5 0.011 3.6E-07 42.8 3.6 23 52-74 19-41 (187)
427 1vg8_A RAS-related protein RAB 95.5 0.011 3.6E-07 43.8 3.7 25 50-74 7-31 (207)
428 3bwd_D RAC-like GTP-binding pr 95.5 0.011 3.7E-07 42.7 3.6 25 50-74 7-31 (182)
429 2xzl_A ATP-dependent helicase 95.5 0.013 4.6E-07 53.1 4.9 24 53-76 377-400 (802)
430 2p5s_A RAS and EF-hand domain 95.5 0.011 3.7E-07 43.7 3.7 25 50-74 27-51 (199)
431 3ihw_A Centg3; RAS, centaurin, 95.5 0.013 4.3E-07 43.0 4.0 25 51-75 20-44 (184)
432 2bbs_A Cystic fibrosis transme 95.5 0.0059 2E-07 48.8 2.3 25 53-77 66-90 (290)
433 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.011 3.8E-07 42.8 3.6 24 51-74 5-28 (186)
434 1ko7_A HPR kinase/phosphatase; 95.5 0.016 5.3E-07 46.8 4.7 23 52-74 145-167 (314)
435 3bh0_A DNAB-like replicative h 95.5 0.012 4.1E-07 47.4 4.1 25 53-77 70-94 (315)
436 1m2o_B GTP-binding protein SAR 95.5 0.0092 3.2E-07 43.9 3.2 24 51-74 23-46 (190)
437 1ksh_A ARF-like protein 2; sma 95.4 0.011 3.7E-07 43.1 3.5 25 50-74 17-41 (186)
438 3eiq_A Eukaryotic initiation f 95.4 0.041 1.4E-06 45.1 7.4 21 53-73 79-99 (414)
439 2bme_A RAB4A, RAS-related prot 95.4 0.0089 3E-07 43.4 3.0 24 51-74 10-33 (186)
440 1zd9_A ADP-ribosylation factor 95.4 0.011 3.7E-07 43.4 3.4 24 51-74 22-45 (188)
441 3def_A T7I23.11 protein; chlor 95.4 0.029 9.8E-07 43.7 6.0 25 50-74 35-59 (262)
442 3c5c_A RAS-like protein 12; GD 95.4 0.012 4.2E-07 43.1 3.7 24 51-74 21-44 (187)
443 3tui_C Methionine import ATP-b 95.4 0.0085 2.9E-07 49.4 3.1 25 53-77 56-80 (366)
444 1pui_A ENGB, probable GTP-bind 95.4 0.0056 1.9E-07 45.6 1.9 25 50-74 25-49 (210)
445 2gf0_A GTP-binding protein DI- 95.4 0.014 4.7E-07 42.8 3.9 25 50-74 7-31 (199)
446 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0077 2.6E-07 51.2 2.8 25 53-77 140-164 (460)
447 2iut_A DNA translocase FTSK; n 95.4 0.13 4.4E-06 44.8 10.5 25 53-77 216-240 (574)
448 3reg_A RHO-like small GTPase; 95.4 0.011 3.7E-07 43.5 3.3 26 50-75 22-47 (194)
449 3iev_A GTP-binding protein ERA 95.4 0.13 4.5E-06 41.0 10.0 21 54-74 13-33 (308)
450 3qks_A DNA double-strand break 95.4 0.015 5.1E-07 43.7 4.1 25 53-77 25-49 (203)
451 1zj6_A ADP-ribosylation factor 95.4 0.013 4.3E-07 42.8 3.6 24 50-73 15-38 (187)
452 2rcn_A Probable GTPase ENGC; Y 95.3 0.0091 3.1E-07 49.1 3.1 23 53-75 217-239 (358)
453 3tkl_A RAS-related protein RAB 95.3 0.011 3.9E-07 43.2 3.4 24 51-74 16-39 (196)
454 2yv5_A YJEQ protein; hydrolase 95.3 0.0093 3.2E-07 47.8 3.0 22 53-75 167-188 (302)
455 1vt4_I APAF-1 related killer D 95.3 0.02 6.9E-07 53.5 5.5 42 25-73 131-172 (1221)
456 2a5j_A RAS-related protein RAB 95.3 0.013 4.4E-07 43.0 3.5 23 52-74 22-44 (191)
457 3nh6_A ATP-binding cassette SU 95.3 0.0058 2E-07 49.2 1.7 25 53-77 82-106 (306)
458 2b6h_A ADP-ribosylation factor 95.3 0.013 4.3E-07 43.3 3.5 24 50-73 28-51 (192)
459 3oes_A GTPase rhebl1; small GT 95.3 0.013 4.4E-07 43.4 3.4 26 50-75 23-48 (201)
460 3t1o_A Gliding protein MGLA; G 95.2 0.012 4.1E-07 43.0 3.2 23 52-74 15-37 (198)
461 2fg5_A RAB-22B, RAS-related pr 95.2 0.012 3.9E-07 43.3 3.1 25 50-74 22-46 (192)
462 2iwr_A Centaurin gamma 1; ANK 95.2 0.01 3.5E-07 42.8 2.8 24 51-74 7-30 (178)
463 3t5g_A GTP-binding protein RHE 95.2 0.0098 3.4E-07 43.0 2.7 24 51-74 6-29 (181)
464 2fh5_B SR-beta, signal recogni 95.2 0.013 4.4E-07 43.8 3.4 26 51-76 7-32 (214)
465 3fho_A ATP-dependent RNA helic 95.2 0.028 9.6E-07 48.1 5.9 18 53-70 160-177 (508)
466 2gf9_A RAS-related protein RAB 95.2 0.013 4.6E-07 42.8 3.4 23 52-74 23-45 (189)
467 1knx_A Probable HPR(Ser) kinas 95.2 0.01 3.5E-07 47.8 2.9 23 52-74 148-170 (312)
468 2cxx_A Probable GTP-binding pr 95.2 0.0099 3.4E-07 43.2 2.6 22 53-74 3-24 (190)
469 4f4c_A Multidrug resistance pr 95.2 0.041 1.4E-06 52.7 7.3 103 54-166 1108-1273(1321)
470 1f6b_A SAR1; gtpases, N-termin 95.2 0.012 4.1E-07 43.7 3.0 24 50-73 24-47 (198)
471 2j1l_A RHO-related GTP-binding 95.1 0.014 4.9E-07 43.7 3.4 25 50-74 33-57 (214)
472 1qhl_A Protein (cell division 95.1 0.0053 1.8E-07 47.3 1.0 24 54-77 30-53 (227)
473 2r6a_A DNAB helicase, replicat 95.1 0.013 4.6E-07 49.5 3.5 25 53-77 205-229 (454)
474 3a1s_A Iron(II) transport prot 95.1 0.013 4.5E-07 45.8 3.2 25 50-74 4-28 (258)
475 1x3s_A RAS-related protein RAB 95.1 0.014 4.7E-07 42.6 3.1 23 52-74 16-38 (195)
476 1gwn_A RHO-related GTP-binding 95.1 0.015 5.2E-07 43.4 3.4 26 50-75 27-52 (205)
477 1u0l_A Probable GTPase ENGC; p 95.1 0.0093 3.2E-07 47.7 2.3 23 53-75 171-193 (301)
478 2bcg_Y Protein YP2, GTP-bindin 95.1 0.013 4.5E-07 43.4 3.0 24 51-74 8-31 (206)
479 2qnr_A Septin-2, protein NEDD5 95.1 0.011 3.9E-07 47.2 2.8 24 51-74 18-41 (301)
480 2h17_A ADP-ribosylation factor 95.1 0.013 4.3E-07 42.6 2.8 25 50-74 20-44 (181)
481 3dz8_A RAS-related protein RAB 95.1 0.013 4.5E-07 42.9 3.0 24 52-75 24-47 (191)
482 2obl_A ESCN; ATPase, hydrolase 95.0 0.013 4.4E-07 48.0 3.1 25 53-77 73-97 (347)
483 1z63_A Helicase of the SNF2/RA 95.0 0.054 1.9E-06 45.9 7.1 25 53-77 58-82 (500)
484 2q3h_A RAS homolog gene family 95.0 0.017 5.7E-07 42.6 3.5 25 50-74 19-43 (201)
485 2ew1_A RAS-related protein RAB 95.0 0.014 4.7E-07 43.6 3.0 26 51-76 26-51 (201)
486 3pqc_A Probable GTP-binding pr 95.0 0.016 5.6E-07 42.2 3.3 22 53-74 25-46 (195)
487 4bas_A ADP-ribosylation factor 95.0 0.017 5.7E-07 42.4 3.4 23 52-74 18-40 (199)
488 1zbd_A Rabphilin-3A; G protein 95.0 0.014 4.9E-07 43.0 3.0 23 52-74 9-31 (203)
489 3k53_A Ferrous iron transport 95.0 0.016 5.6E-07 45.3 3.4 22 53-74 5-26 (271)
490 2cjw_A GTP-binding protein GEM 95.0 0.016 5.5E-07 42.8 3.2 21 53-73 8-28 (192)
491 4gzl_A RAS-related C3 botulinu 95.0 0.018 6.1E-07 42.9 3.4 25 50-74 29-53 (204)
492 3cbq_A GTP-binding protein REM 94.9 0.014 4.7E-07 43.3 2.8 21 52-72 24-44 (195)
493 2qu8_A Putative nucleolar GTP- 94.9 0.02 6.7E-07 43.4 3.7 25 50-74 28-52 (228)
494 2o52_A RAS-related protein RAB 94.9 0.014 4.9E-07 43.2 2.9 25 50-74 24-48 (200)
495 2dpy_A FLII, flagellum-specifi 94.9 0.014 4.8E-07 49.3 3.1 25 53-77 159-183 (438)
496 2qag_C Septin-7; cell cycle, c 94.9 0.016 5.4E-07 48.7 3.3 26 51-76 31-56 (418)
497 3lxw_A GTPase IMAP family memb 94.9 0.018 6.1E-07 44.6 3.5 25 50-74 20-44 (247)
498 2x77_A ADP-ribosylation factor 94.9 0.012 4.2E-07 42.9 2.3 23 50-72 21-43 (189)
499 2qag_B Septin-6, protein NEDD5 94.9 0.013 4.4E-07 49.3 2.7 22 54-75 45-66 (427)
500 2il1_A RAB12; G-protein, GDP, 94.9 0.016 5.6E-07 42.5 3.0 23 52-74 27-49 (192)
No 1
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.85 E-value=5e-21 Score=172.94 Aligned_cols=168 Identities=19% Similarity=0.308 Sum_probs=124.0
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
.+..+++.|.+.++||+.+++.+..++.....+...+++|. +++|+||||||||++|+++|+.++. . ..+++.+
T Consensus 481 ~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~--~~~~i~i 555 (758)
T 3pxi_A 481 KLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---D--EESMIRI 555 (758)
T ss_dssp CC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---C--TTCEEEE
T ss_pred HHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CcceEEE
Confidence 35678889999999999999999999998654433355776 5999999999999999999999866 3 3467777
Q ss_pred hcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695 91 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS 166 (202)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts 166 (202)
+++.+....... .+.+.+.+...+++|++|||++++++++++.|+++|+++.+++. .++.++++|+||
T Consensus 556 ~~s~~~~~~~~~--------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 556 DMSEYMEKHSTS--------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp EGGGGCSSCCCC-----------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred echhcccccccc--------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 777665443222 12333456677889999999999999999999999999887643 578899999999
Q ss_pred CcChHHHHHHHHHHHHhhhHHHHhcc
Q psy1695 167 NSGGTEIMNTFLELRKSECIEFIFQC 192 (202)
Q Consensus 167 n~~~~~i~~~~~~~~~~~~~r~~~~~ 192 (202)
|.+.+............++++|..|+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhC
Confidence 98765322222223344566666666
No 2
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.85 E-value=6.8e-21 Score=174.02 Aligned_cols=173 Identities=19% Similarity=0.340 Sum_probs=122.2
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695 14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 92 (202)
Q Consensus 14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 92 (202)
..+++.+.+.++||+.+++.+..++.....+...+++|. +++|+||||||||++|+++++.+.+ . ..+++.+++
T Consensus 550 ~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~--~~~~i~i~~ 624 (854)
T 1qvr_A 550 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRIDM 624 (854)
T ss_dssp HSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEEECT
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CCcEEEEec
Confidence 456777888999999999999999988654322244676 6999999999999999999999866 2 223444443
Q ss_pred cc---------ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCc
Q psy1695 93 SR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQN 159 (202)
Q Consensus 93 ~~---------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~ 159 (202)
+. +.+.++++++ +.+ .+.+.+.+...+++||+|||++++++++++.|+++|+++.+++. +++++
T Consensus 625 ~~~~~~~~~s~l~g~~~~~~G-~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 625 TEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp TTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred hhccchhHHHHHcCCCCCCcC-ccc--cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCC
Confidence 32 2333445555 433 34566777788889999999999999999999999999987643 58899
Q ss_pred eEEEEeeCcChHHHHHH---------HHH-----HHHhhhHHHHhccch
Q psy1695 160 TIFLFLSNSGGTEIMNT---------FLE-----LRKSECIEFIFQCQP 194 (202)
Q Consensus 160 ~~~Iltsn~~~~~i~~~---------~~~-----~~~~~~~r~~~~~~~ 194 (202)
+++|+|||.+.+.+.+. +-+ ....++++|..++..
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~ 750 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDE 750 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSB
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCe
Confidence 99999999987766441 111 244567777777744
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.85 E-value=1.1e-20 Score=170.60 Aligned_cols=152 Identities=21% Similarity=0.320 Sum_probs=117.8
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
.+..+++.|.+.++||+.+++.+..++.....+-..+++|. +++|+||||||||++|+++++.+.. +++.+
T Consensus 448 ~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~--------~~~~i 519 (758)
T 1r6b_X 448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLRF 519 (758)
T ss_dssp HHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC--------EEEEE
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC--------CEEEE
Confidence 35678889999999999999999999987654332245676 5999999999999999999999732 33444
Q ss_pred hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++ .+.+.++++++ +.+ .+.+.+.+...+++|++|||++++++++++.|+++|+++.+++. +++
T Consensus 520 ~~s~~~~~~~~~~l~g~~~g~~g-~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp EGGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred echhhcchhhHhhhcCCCCCCcC-ccc--cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 333 33445566776 544 45567778888999999999999999999999999999887643 578
Q ss_pred CceEEEEeeCcChHHHH
Q psy1695 158 QNTIFLFLSNSGGTEIM 174 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i~ 174 (202)
.+++||+|||.+.+.+.
T Consensus 597 ~~~~iI~tsN~~~~~~~ 613 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETE 613 (758)
T ss_dssp TTEEEEEEECSSCC---
T ss_pred CCeEEEEecCcchhhhh
Confidence 99999999999765443
No 4
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.85 E-value=1.7e-20 Score=152.23 Aligned_cols=154 Identities=19% Similarity=0.344 Sum_probs=113.2
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 90 (202)
.+..+++.|.+.++||+.+++.+..++......-..+.+|. +++|+||||||||++|+++++.+.+ . ..+++.+
T Consensus 7 ~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~--~~~~~~~ 81 (311)
T 4fcw_A 7 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRI 81 (311)
T ss_dssp HHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---C--GGGEEEE
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---C--CcceEEe
Confidence 46789999999999999999999999998654322234565 5999999999999999999999865 2 1223333
Q ss_pred hcccc---------cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695 91 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF 157 (202)
Q Consensus 91 ~~~~~---------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~ 157 (202)
+++.+ .+..+++.+ +.. ...+.+.+..++.++++|||++++++.+++.|+++|+++.+... .++
T Consensus 82 ~~~~~~~~~~~~~l~g~~~~~~~-~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 82 DMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp EGGGCCSTTHHHHHHCCCTTSTT-TTT--CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ecccccccccHHHhcCCCCcccc-ccc--cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 33222 112222222 111 23455667777889999999999999999999999999876543 577
Q ss_pred CceEEEEeeCcChHHH
Q psy1695 158 QNTIFLFLSNSGGTEI 173 (202)
Q Consensus 158 ~~~~~Iltsn~~~~~i 173 (202)
++++||+|||.+.+.+
T Consensus 159 ~~~iiI~ttn~~~~~i 174 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLI 174 (311)
T ss_dssp TTEEEEEEESTTHHHH
T ss_pred CCcEEEEecccCHHHH
Confidence 8999999999976533
No 5
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=8.2e-18 Score=136.32 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=103.8
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHh-------ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQ-------NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG- 83 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~-------~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~- 83 (202)
.+..+.+.|.++++|++.+++.+.+.+..... +-.....+.+++|+||||||||++|+++++.+.. .+.
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~ 97 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR---LGYV 97 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH---TTSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCc
Confidence 46778888988999999999999887765321 0000123447999999999999999999999865 221
Q ss_pred -ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccc
Q psy1695 84 -TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYN 153 (202)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~ 153 (202)
..+++.+....+.....+.. ...+.+.+.....+|++|||++.+ +..+++.|+++++++.
T Consensus 98 ~~~~~~~~~~~~l~~~~~g~~-------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~--- 167 (309)
T 3syl_A 98 RKGHLVSVTRDDLVGQYIGHT-------APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR--- 167 (309)
T ss_dssp SSCCEEEECGGGTCCSSTTCH-------HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT---
T ss_pred CCCcEEEEcHHHhhhhccccc-------HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC---
Confidence 22344444444322222111 112223333345679999999966 7889999999999875
Q ss_pred cccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHH
Q psy1695 154 QISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEF 188 (202)
Q Consensus 154 ~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~ 188 (202)
.+.++|+++|.... +.++...+..+.||
T Consensus 168 ----~~~~~i~~~~~~~~---~~~~~~~~~l~~R~ 195 (309)
T 3syl_A 168 ----DDLVVILAGYADRM---ENFFQSNPGFRSRI 195 (309)
T ss_dssp ----TTCEEEEEECHHHH---HHHHHHSTTHHHHE
T ss_pred ----CCEEEEEeCChHHH---HHHHhhCHHHHHhC
Confidence 78899999987632 22222335555566
No 6
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.72 E-value=1.2e-17 Score=138.82 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=95.4
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc-------CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCc
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR-------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT 84 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~-------~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~ 84 (202)
++..+++.|++.++||+.+++.+..++....... .....+.+++|+||||||||++|+++|+.+..
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------- 77 (363)
T 3hws_A 5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------- 77 (363)
T ss_dssp CHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------
Confidence 5788999999999999999999999996533211 00112346999999999999999999999632
Q ss_pred cchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-------hCCceEEEEecCCCCChh--------------HHHHHH
Q psy1695 85 SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------ACDRAIFIFDEVDKFPKG--------------LLDVII 143 (202)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------~~~~~viiiDEid~~~~~--------------~~~~L~ 143 (202)
+++.++++.+.. ..+++ ... ...+...+. .++.+|++|||++++++. +++.|+
T Consensus 78 -~~~~~~~~~l~~--~~~~g-~~~--~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 78 -PFTMADATTLTE--AGYVG-EDV--ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp -CEEEEEHHHHTT--CHHHH-HHH--THHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred -CEEEechHHhcc--ccccc-ccH--HHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence 455555443321 22333 111 122222222 234579999999999876 999999
Q ss_pred HhcccCccc---------------ccccCCceEEEEeeCc
Q psy1695 144 PFIDHHAVY---------------NQISFQNTIFLFLSNS 168 (202)
Q Consensus 144 ~~le~~~~~---------------~~~~~~~~~~Iltsn~ 168 (202)
++|+ +... ..+...|.+||+++|.
T Consensus 152 ~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~ 190 (363)
T 3hws_A 152 KLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 190 (363)
T ss_dssp HHHH-CC----------------CCCCCTTSSEEEEEECC
T ss_pred HHhc-CceeeccCccccccCCCceEEEECCCceEEecCCc
Confidence 9999 4311 0125567777777776
No 7
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.70 E-value=3.9e-17 Score=118.83 Aligned_cols=119 Identities=11% Similarity=0.137 Sum_probs=85.4
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
+++|++.+++.+.+.+........ +++|+||||||||++|+++++.... . ..+++ ++++.+... ...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~------~vll~G~~GtGKt~lA~~i~~~~~~---~--~~~~v-~~~~~~~~~-~~~ 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDI------AVWLYGAPGTGRMTGARYLHQFGRN---A--QGEFV-YRELTPDNA-PQL 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCS------CEEEESSTTSSHHHHHHHHHHSSTT---T--TSCCE-EEECCTTTS-SCH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCCHHHHHHHHHHhCCc---c--CCCEE-EECCCCCcc-hhh
Confidence 589999999999998887754332 6899999999999999999987533 2 23555 555543222 101
Q ss_pred hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 173 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i 173 (202)
.+ .+.....++++|||++.+++..++.|+++|+... .+..+|++||...+..
T Consensus 69 --------~~----~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-------~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 69 --------ND----FIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-------RPFRLIGIGDTSLVEL 120 (145)
T ss_dssp --------HH----HHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-------CSSCEEEEESSCHHHH
T ss_pred --------hc----HHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-------CCEEEEEECCcCHHHH
Confidence 11 1222234789999999999999999999996544 5678999999987643
No 8
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.7e-16 Score=132.71 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=101.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|-|.+.+++.+.+++..-+.++. +...|.++||+||||||||++|+++|.++.. +++.+..+.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--------~f~~v~~s~l~ 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--------KFIRVSGAELV 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--------EEEEEEGGGGS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--------CceEEEhHHhh
Confidence 4699999999999998876433221 1234568999999999999999999999643 56666666554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------h---HHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~---~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+. . +.....+..........||||||+|.+.+ . +.+.|+..|+.-. ...++++
T Consensus 220 sk~vGe---s-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~V~v 290 (405)
T 4b4t_J 220 QKYIGE---G-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----TSKNIKI 290 (405)
T ss_dssp CSSTTH---H-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----CCCCEEE
T ss_pred ccccch---H-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----CCCCeEE
Confidence 433322 2 22234444445555568999999988742 1 3445555555321 2367888
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK 201 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~ 201 (202)
|+|||.... +-.+ +++.||. ....+.+.|+.|+++
T Consensus 291 IaATNrpd~-LDpA---llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 291 IMATNRLDI-LDPA---LLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp EEEESCSSS-SCHH---HHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred EeccCChhh-CCHh---HcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 999998654 2222 3566664 333444557777665
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.67 E-value=3.7e-16 Score=126.25 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=95.9
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC------CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH------NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 83 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~------~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~ 83 (202)
+.+++.+.+.|.+.++||+.+++.+..++...+..... ...|.+++|+||||||||++|+++++.+..
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~------ 76 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------ 76 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC------
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence 35789999999999999999999999988773221100 113557999999999999999999999633
Q ss_pred ccchhhhhcccccCCCCchhHHHHHHhHHHHHH----hhhh-CCceEEEEecCCCCChhH------------HHHHHHhc
Q psy1695 84 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS----NVTA-CDRAIFIFDEVDKFPKGL------------LDVIIPFI 146 (202)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~-~~~~viiiDEid~~~~~~------------~~~L~~~l 146 (202)
+++.++++.+... ++++.........+.. .+.. .+.+|++|||+|++++.. ++.|++++
T Consensus 77 --~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 77 --PFIKVEATKFTEV--GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp --CEEEEEGGGGSSC--CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred --CEEEEcchhcccC--CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 3344444333211 1221000000111111 1111 125799999999998765 89999999
Q ss_pred ccCcccc---cccCCceEEEEeeCc
Q psy1695 147 DHHAVYN---QISFQNTIFLFLSNS 168 (202)
Q Consensus 147 e~~~~~~---~~~~~~~~~Iltsn~ 168 (202)
+.+.+.. .....+.+||+++|.
T Consensus 153 e~~~~~~~~~~~~~~~~~~i~~~~~ 177 (310)
T 1ofh_A 153 EGSTVSTKHGMVKTDHILFIASGAF 177 (310)
T ss_dssp HCCEEEETTEEEECTTCEEEEEECC
T ss_pred cCCeEecccccccCCcEEEEEcCCc
Confidence 9764321 124457788888753
No 10
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=1.7e-16 Score=132.34 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc----------------------CCCCCceEEEEecCCCCcHHHHHH
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----------------------YHNTKALAISLHGLPGTGKNYVTD 69 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~----------------------~~~~~pl~~ll~Gp~GtGKT~la~ 69 (202)
++..+++.|++.|+||+.|++.+..++..+.... .....+.+++|+||||||||++|+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 5789999999999999999999998884321100 001123369999999999999999
Q ss_pred HHHHHhhccccCcCccchhhhhcccccCCCCchhHHH-HHHhHHHHH---HhhhhCCceEEEEecCCCCChh--------
Q psy1695 70 FIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPKG-------- 137 (202)
Q Consensus 70 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~---~~l~~~~~~viiiDEid~~~~~-------- 137 (202)
++|+.+.. +++.+++..+.. .++.+.. ...+...+. ..+..+..+|++|||+++++..
T Consensus 91 ~la~~l~~--------~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~ 160 (376)
T 1um8_A 91 TLAKHLDI--------PIAISDATSLTE--AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR 160 (376)
T ss_dssp HHHHHTTC--------CEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred HHHHHhCC--------CEEEecchhhhh--cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec
Confidence 99998632 344443333211 1121100 000111111 1122335689999999999987
Q ss_pred ------HHHHHHHhcccCccc--c-c-----------ccCCceEEEEeeCc
Q psy1695 138 ------LLDVIIPFIDHHAVY--N-Q-----------ISFQNTIFLFLSNS 168 (202)
Q Consensus 138 ------~~~~L~~~le~~~~~--~-~-----------~~~~~~~~Iltsn~ 168 (202)
+++.|+++|+.+.+. . + ...+|.+||+++|.
T Consensus 161 ~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~ 211 (376)
T 1um8_A 161 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF 211 (376)
T ss_dssp ---CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred ccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence 999999999976321 1 0 24577788888874
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.4e-16 Score=129.88 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=99.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+.+++.+.+.+...+.++. +-..|.++||+||||||||++|+++|.++.. +++.+..+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--------~fi~vs~s~L~ 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--------TFIRVIGSELV 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGGC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--------CeEEEEhHHhh
Confidence 3699999999999988765332211 1235668999999999999999999999643 56666666554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------h---HHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~---~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. +.....+..........||||||+|.+.. . ..+.++..|+... ...++++
T Consensus 281 sk~vGes----ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~ViV 351 (467)
T 4b4t_H 281 QKYVGEG----ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----PRGNIKV 351 (467)
T ss_dssp CCSSSHH----HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----CTTTEEE
T ss_pred cccCCHH----HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----CCCcEEE
Confidence 4433322 12233444444455568999999987732 1 2344455454321 3367888
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK 201 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~ 201 (202)
|+|||.... +-.+ +++.||. ....+.+.|+.|+++
T Consensus 352 IaATNrpd~-LDpA---LlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 352 MFATNRPNT-LDPA---LLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp EEECSCTTS-BCHH---HHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred EeCCCCccc-CChh---hhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 999987643 2233 3555654 333444557777765
No 12
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.64 E-value=9.9e-17 Score=116.45 Aligned_cols=115 Identities=9% Similarity=0.124 Sum_probs=81.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++|++.+++.+.+.+......+. +++|+||||||||++|+++++... +++.+++..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~------~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~~~------- 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTS------PVFLTGEAGSPFETVARYFHKNGT---------PWVSPARVEY------- 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSS------CEEEEEETTCCHHHHHGGGCCTTS---------CEECCSSTTH-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHhCC---------CeEEechhhC-------
Confidence 589999999999999888764432 689999999999999999876521 3333333221
Q ss_pred hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
.... ..+.+.....++++|||++.++++.++.|+++++++. ..+..+|++||...+.
T Consensus 63 ----~~~~---~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------~~~~~iI~~tn~~~~~ 119 (143)
T 3co5_A 63 ----LIDM---PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------RCRVRVIASCSYAAGS 119 (143)
T ss_dssp ----HHHC---HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------TTTCEEEEEEEECTTT
T ss_pred ----ChHh---hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------CCCEEEEEecCCCHHH
Confidence 0000 1222334446799999999999999999999999752 2568899999987554
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.4e-15 Score=123.99 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=100.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+.+++.+.+++...+.++. +...|.++||+||||||||++|+++|..+.. +++.+..+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--------~~~~v~~s~l~ 252 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--------NFIFSPASGIV 252 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGTC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehhhhc
Confidence 4689999999999999876443321 1234568999999999999999999999643 55656555554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. +.....+..........||||||+|.+.. .+.+.|+..|+... ...++++
T Consensus 253 sk~~Ges----e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~viv 323 (437)
T 4b4t_L 253 DKYIGES----ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----NLGQTKI 323 (437)
T ss_dssp CSSSSHH----HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----CTTSSEE
T ss_pred cccchHH----HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----CCCCeEE
Confidence 4333222 12233444445555668999999987632 13455666665422 2357889
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK 201 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~ 201 (202)
|+|||.... +-.+ +++.||. ....+.+.++.|+++
T Consensus 324 I~ATNrp~~-LDpA---llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 324 IMATNRPDT-LDPA---LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp EEEESSTTS-SCTT---TTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred EEecCCchh-hCHH---HhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 999997643 2222 2445543 233344456666665
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=9.9e-15 Score=122.61 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=99.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|-|.+.+++.+.+.+...+.++. ....|.++||+||||||||++|+++|.++.. +++.+..+.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--------~fi~v~~s~l~ 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--------TFLRIVGSELI 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--------EEEEEESGGGC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--------CEEEEEHHHhh
Confidence 4689999999999999876543321 1234568999999999999999999999633 56666555554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hH---HHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GL---LDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~---~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. +.....+..........||+|||+|.+.. .. .+.|+..++... ...++++
T Consensus 254 sk~vGes----ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----~~~~ViV 324 (437)
T 4b4t_I 254 QKYLGDG----PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----DRGDVKV 324 (437)
T ss_dssp CSSSSHH----HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----CSSSEEE
T ss_pred hccCchH----HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----CCCCEEE
Confidence 4333222 22234444445555568999999986632 22 334444444311 2367889
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhHH---------HHhccchhHHHhhc
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECIE---------FIFQCQPLKVYLKK 201 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~r---------~~~~~~~~~~~~~~ 201 (202)
|+|||.... +-.+ +++.||.+ ...+.+.|+.|+++
T Consensus 325 IaATNrpd~-LDpA---LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 325 IMATNKIET-LDPA---LIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp EEEESCSTT-CCTT---SSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred EEeCCChhh-cCHH---HhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 999998653 2222 24445442 33344556666665
No 15
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.60 E-value=4.1e-15 Score=120.25 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEE
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 127 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vii 127 (202)
.+.|.+++|+||||||||++|+++|+.+.. +++.+.++.+.....+..............+........||+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~--------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI--------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTC--------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 446778999999999999999999999633 455555444433222211111111111111112344568999
Q ss_pred EecCCCCCh-------------hHHHHHHHhcccCccc------ccccCCceEEEEeeCcCh
Q psy1695 128 FDEVDKFPK-------------GLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 128 iDEid~~~~-------------~~~~~L~~~le~~~~~------~~~~~~~~~~Iltsn~~~ 170 (202)
|||+|++.+ .+++.|+++|+..... ......++++|+|||...
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 999988765 3568899999854321 112557899999999764
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.59 E-value=6e-15 Score=117.19 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=86.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc------
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------ 96 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------ 96 (202)
.++|++.++..+.+.+......+ .+++|+||||||||++|+++++.+.. . ..+++.++++.+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~------~~vll~G~~GtGKt~la~~i~~~~~~---~--~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLD------KPVLIIGERGTGKELIASRLHYLSSR---W--QGPFISLNCAALNENLLDS 75 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSC------SCEEEECCTTSCHHHHHHHHHHTSTT---T--TSCEEEEEGGGSCHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHhCCC------CCEEEECCCCCcHHHHHHHHHHhcCc---c--CCCeEEEecCCCChhHHHH
Confidence 48899999999988888765432 26899999999999999999998643 2 2244444443321
Q ss_pred ---CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695 97 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG 169 (202)
Q Consensus 97 ---~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~ 169 (202)
+...+. +... .....+.+.....++++|||++.++.+.++.|+++++++.+... ....++.+|++||..
T Consensus 76 ~l~g~~~~~---~~g~-~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 ELFGHEAGA---FTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp HHHCCC-------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred HhcCCcccc---cccc-cccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 000000 0000 00000112234457999999999999999999999998754321 122467899999997
Q ss_pred hHHH
Q psy1695 170 GTEI 173 (202)
Q Consensus 170 ~~~i 173 (202)
.+.+
T Consensus 152 ~~~~ 155 (265)
T 2bjv_A 152 LPAM 155 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-14 Score=121.38 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=92.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+.+++.+.+.+...+.++. +...|.++||+||||||||++|+++|..+.. +++.+..+.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--------~~~~v~~~~l~ 243 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--------AFIRVNGSEFV 243 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC--------EEEEEEGGGTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CeEEEecchhh
Confidence 4799999999999998876543321 1235668999999999999999999999643 56666665554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------h---hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------K---GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~---~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. . .....+..........|++|||+|.+. . .+.+.|+..|+.-. +..++++
T Consensus 244 ~~~~Ge~---e-~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----~~~~v~v 314 (428)
T 4b4t_K 244 HKYLGEG---P-RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----QSTNVKV 314 (428)
T ss_dssp CSSCSHH---H-HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----SSCSEEE
T ss_pred ccccchh---H-HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----CCCCEEE
Confidence 4333222 1 113334444445556899999995331 1 24555666666421 2367899
Q ss_pred EEeeCcChHHHHHHHHHHHHhhhHH
Q psy1695 163 LFLSNSGGTEIMNTFLELRKSECIE 187 (202)
Q Consensus 163 Iltsn~~~~~i~~~~~~~~~~~~~r 187 (202)
|+|||.... +-.+ +++.||.+
T Consensus 315 I~aTN~~~~-LD~A---llRpGRfd 335 (428)
T 4b4t_K 315 IMATNRADT-LDPA---LLRPGRLD 335 (428)
T ss_dssp EEEESCSSS-CCHH---HHSSSSEE
T ss_pred EEecCChhh-cChh---hhcCCcce
Confidence 999997643 2233 34556543
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.58 E-value=1.7e-14 Score=117.90 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=86.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+.+++......+. ....|.+++|+||||||||++|+++|+.+.. +++.+..+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~~ 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSSDLVS 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--------EEEEEEHHHHHT
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--------CEEEEchHHHhh
Confidence 4699999999999998865443321 0123457999999999999999999998533 344444443322
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
.. .+... .....+..........||+|||+|.+.. .+++.|+..++... ....++++|.+|
T Consensus 90 ~~---~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vi~at 161 (322)
T 3eie_A 90 KW---MGESE-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGAT 161 (322)
T ss_dssp TT---GGGHH-HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCEEEEEEE
T ss_pred cc---cchHH-HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCceEEEEec
Confidence 22 12111 1133344444555568999999998864 34677777776421 122577888888
Q ss_pred CcChH
Q psy1695 167 NSGGT 171 (202)
Q Consensus 167 n~~~~ 171 (202)
|....
T Consensus 162 n~~~~ 166 (322)
T 3eie_A 162 NIPWQ 166 (322)
T ss_dssp SCGGG
T ss_pred CChhh
Confidence 87543
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.6e-14 Score=122.17 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=86.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|.|.+.+++.+.+.+...+.++. +...|.++||+||||||||++|+++|..+.. +++.+..+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--------~f~~v~~s~l~ 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--------TFLKLAAPQLV 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGGC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--------CEEEEehhhhh
Confidence 4699999999999998876544322 1234668999999999999999999999643 56666666554
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hh---HHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KG---LLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~---~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. +.....+..........||||||+|.+. .. ..+.|+..|+... ...++++
T Consensus 253 ~~~vGes----e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~ViV 323 (434)
T 4b4t_M 253 QMYIGEG----AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----SDDRVKV 323 (434)
T ss_dssp SSCSSHH----HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----SSCSSEE
T ss_pred hcccchH----HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----CCCCEEE
Confidence 4433322 1223334444444445799999996541 11 2445565565422 2256788
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|+|||...
T Consensus 324 IaaTNrp~ 331 (434)
T 4b4t_M 324 LAATNRVD 331 (434)
T ss_dssp EEECSSCC
T ss_pred EEeCCCch
Confidence 89999864
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=2.3e-14 Score=114.76 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=84.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+...+..+. ....+.+++|+||||||||++|+++|+.+.. +++.+....+.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~ 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA--------TFIRVVGSELV 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC--------EEEEEEGGGGC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehHHHH
Confidence 4699999999999988876432210 0124557999999999999999999998533 34444444433
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
....+.. .. ....+..........|++|||+|.+ ....+..|..+++.... .....+.++|+|
T Consensus 89 ~~~~~~~---~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~~~~vI~t 162 (285)
T 3h4m_A 89 KKFIGEG---AS-LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG--FDARGDVKIIGA 162 (285)
T ss_dssp CCSTTHH---HH-HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT--TCSSSSEEEEEE
T ss_pred HhccchH---HH-HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC--CCCCCCEEEEEe
Confidence 3322221 11 1223333444455689999999887 44566777776654210 011246788888
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
||...
T Consensus 163 tn~~~ 167 (285)
T 3h4m_A 163 TNRPD 167 (285)
T ss_dssp CSCGG
T ss_pred CCCch
Confidence 88653
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=116.18 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=85.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
+++.|++.+++.+.+.+...+..+.. ...|.+++|+||||||||++|+++|+.+.. ..++.+..+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVS 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-------CEEEEEECCSSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-------CcEEEEEhHHHHh
Confidence 46999999999999988764433210 123457999999999999999999998623 2344444443332
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...+... .....+..........||||||+|.+.+ .+.+.|+..++.-. ....++++|.+|
T Consensus 85 ~~~g~~~----~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~v~vI~at 156 (322)
T 1xwi_A 85 KWLGESE----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGAT 156 (322)
T ss_dssp SSCCSCH----HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----SCCTTEEEEEEE
T ss_pred hhhhHHH----HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----ccCCCEEEEEec
Confidence 2222211 1123334444455568999999998732 34566666666421 122678888899
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 157 n~~~ 160 (322)
T 1xwi_A 157 NIPW 160 (322)
T ss_dssp SCTT
T ss_pred CCcc
Confidence 8763
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.56 E-value=3.7e-14 Score=116.27 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=86.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++|++.+++.+...+........ .+.+++|+||||||||++|+++++.+.. +++.++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~ia~~~~~--------~~~~~~~~~~~----- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNE---CLDHILFSGPAGLGKTTLANIISYEMSA--------NIKTTAAPMIE----- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTS---CCCCEEEECSTTSSHHHHHHHHHHHTTC--------CEEEEEGGGCC-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECcCCCCHHHHHHHHHHHhCC--------CeEEecchhcc-----
Confidence 3699999999999988887654322 3346899999999999999999998533 33333332221
Q ss_pred hhHHHHHHhHHHHHHhhh-hCCceEEEEecCCCCChhHHHHHHHhcccCcccc-----------cccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-----------QISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~-~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-----------~~~~~~~~~Iltsn~~ 169 (202)
..+ .+...+. .....+++|||++.+++..++.|++.++++.+.. ..+..+.++|.+||..
T Consensus 93 ~~~--------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~ 164 (338)
T 3pfi_A 93 KSG--------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA 164 (338)
T ss_dssp SHH--------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG
T ss_pred chh--------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc
Confidence 111 1112222 2455899999999999999999999999875321 1234467899999875
Q ss_pred h
Q psy1695 170 G 170 (202)
Q Consensus 170 ~ 170 (202)
.
T Consensus 165 ~ 165 (338)
T 3pfi_A 165 G 165 (338)
T ss_dssp G
T ss_pred c
Confidence 4
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.56 E-value=4.9e-15 Score=122.86 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=83.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+.+++...+..+. ....+.+++|+||||||||++|+++|+.+.. +++.+..+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--------~~~~v~~~~l~~ 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSSDLVS 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC--------EEEEEEHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEeeHHHHhh
Confidence 4699999999999988865433221 0123446999999999999999999999643 344444333322
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...+.. . .....+..........||||||+|.+.+ .+++.|+..|+... ....++++|.+|
T Consensus 123 ~~~g~~---~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGES---E-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGAT 194 (355)
T ss_dssp CC---C---H-HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------CCEEEEEEE
T ss_pred hhcchH---H-HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCCCeEEEeec
Confidence 211111 1 1123333344445568999999998874 24677777776421 112578888899
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 195 n~~~ 198 (355)
T 2qp9_X 195 NIPW 198 (355)
T ss_dssp SCGG
T ss_pred CCcc
Confidence 8763
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.55 E-value=6.2e-14 Score=110.66 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=74.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC-----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~-----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+.. +..+.. ...|.+++|+||||||||++|+++|+.+.. +++.+..+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~~~~~~~~ 76 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--------PFLAMAGAEFV 76 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------CEEEEETTTTS
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEechHHHH
Confidence 4699999999999877654 322210 124557999999999999999999998643 33434333332
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC------------hhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~------------~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
....+. .... ...+..........||+|||+|.+. ...+..+.++++.-. ......+.++|.
T Consensus 77 ~~~~~~---~~~~-~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~~~vi~ 150 (262)
T 2qz4_A 77 EVIGGL---GAAR-VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD--GMGTTDHVIVLA 150 (262)
T ss_dssp SSSTTH---HHHH-HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH--TCCTTCCEEEEE
T ss_pred hhccCh---hHHH-HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh--CcCCCCCEEEEe
Confidence 221111 1111 2223333334446899999999983 233333334433210 001225778888
Q ss_pred eeCcCh
Q psy1695 165 LSNSGG 170 (202)
Q Consensus 165 tsn~~~ 170 (202)
+||...
T Consensus 151 ~tn~~~ 156 (262)
T 2qz4_A 151 STNRAD 156 (262)
T ss_dssp EESCGG
T ss_pred cCCChh
Confidence 888754
No 25
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.55 E-value=9.5e-15 Score=127.37 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=89.4
Q ss_pred CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695 10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89 (202)
Q Consensus 10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 89 (202)
..++..+++.|.++++|++.+++.+...+........ -.+.+++|+||||||||++|++++..+.. ++..
T Consensus 69 ~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~--------~~~~ 138 (543)
T 3m6a_A 69 KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGR--------KFVR 138 (543)
T ss_dssp CCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTC--------EEEE
T ss_pred cccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCC--------CeEE
Confidence 3456777788899999999999998776654322221 13447999999999999999999999744 2222
Q ss_pred hhcccccC------CCCchhHHHHHHhHHHHHHhhhhC--CceEEEEecCCCCChh----HHHHHHHhcccCcccc----
Q psy1695 90 KFNSRIHF------PNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHAVYN---- 153 (202)
Q Consensus 90 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~l~~~--~~~viiiDEid~~~~~----~~~~L~~~le~~~~~~---- 153 (202)
+.+..... ....+++ ...+.+...+... ..+|++|||++++++. .++.|+++|+.+....
T Consensus 139 i~~~~~~~~~~~~g~~~~~ig----~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~ 214 (543)
T 3m6a_A 139 ISLGGVRDESEIRGHRRTYVG----AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDH 214 (543)
T ss_dssp ECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCS
T ss_pred EEecccchhhhhhhHHHHHhc----cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecc
Confidence 22221111 1111222 1112222222222 3469999999999987 5588999998765321
Q ss_pred ----cccCCceEEEEeeCcCh
Q psy1695 154 ----QISFQNTIFLFLSNSGG 170 (202)
Q Consensus 154 ----~~~~~~~~~Iltsn~~~ 170 (202)
..+..+++||+|||...
T Consensus 215 ~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 215 YIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp SSCCCCBCSSCEEEEECSSTT
T ss_pred cCCeeecccceEEEeccCccc
Confidence 13558899999999865
No 26
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.54 E-value=3.7e-14 Score=115.20 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=87.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc-----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH----- 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----- 96 (202)
+.++|++.++..+.+.+...... +.+++|+||||||||++|+++++.... . ..+++.++++.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~--~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS------DATVLIHGDSGTGKELVARALHACSAR---S--DRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST------TSCEEEESCTTSCHHHHHHHHHHHSSC---S--SSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCC------CCcEEEECCCCchHHHHHHHHHHhCcc---c--CCCeEEEeCCCCChHHHH
Confidence 46899999999999888876533 236899999999999999999997543 2 2344444443221
Q ss_pred ----CCCCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695 97 ----FPNEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN 167 (202)
Q Consensus 97 ----~~~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn 167 (202)
+...+ +.+ .... ..+.+.....+++||||++.++...+..|+++++++.+.. + ....++.+|++||
T Consensus 71 ~~lfg~~~g~~tg-~~~~----~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 71 SELFGHEKGAFTG-ADKR----REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp HHHTCCCSSCCC----CC----CCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred HHhcCccccccCc-hhhh----hcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 11110 011 0000 0011222234799999999999999999999999876432 1 1234678999999
Q ss_pred cChHH
Q psy1695 168 SGGTE 172 (202)
Q Consensus 168 ~~~~~ 172 (202)
...+.
T Consensus 146 ~~l~~ 150 (304)
T 1ojl_A 146 RDLAE 150 (304)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 87543
No 27
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.4e-14 Score=115.34 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=82.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+.+++.+...+... . .| +++|+||+|||||++|+++++.+.+ ......++.++. ..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~----~---~~-~~ll~G~~G~GKT~la~~l~~~l~~---~~~~~~~~~~~~-----~~-- 86 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNA-----SD-- 86 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEET-----TC--
T ss_pred HHhhCCHHHHHHHHHHHHcC----C---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCceEEeec-----cc--
Confidence 35999999999888776542 1 23 5899999999999999999999765 210111111111 11
Q ss_pred hhHHHHHHhHHHHHHhh-----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 102 HVSLYRLQLTNWIISNV-----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l-----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
..+ ...+...+.+.. ...+..|++|||++.+++..++.|+++++++. .++.||+++|....
T Consensus 87 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 87 ERG--INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSK 152 (327)
T ss_dssp HHH--HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred cCc--hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCCccc
Confidence 111 011112222211 12456899999999999999999999999876 68889999987543
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=1.3e-14 Score=115.71 Aligned_cols=140 Identities=9% Similarity=0.115 Sum_probs=81.9
Q ss_pred HHHHHHHhhCCChHHHHHHHHHH---HHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695 15 VLEEQLKQHVHGQELAISHICGA---LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 91 (202)
Q Consensus 15 ~l~~~L~~~liGq~~a~~~l~~~---l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 91 (202)
.++..+...++|+..+++.+... +...+.... ...+.+++|+||||||||++|+++++.+.. +++.+.
T Consensus 26 ~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--------~~~~i~ 96 (272)
T 1d2n_A 26 DYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESNF--------PFIKIC 96 (272)
T ss_dssp CSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHTC--------SEEEEE
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEe
Confidence 34445566799999998888775 333343221 224557999999999999999999998533 334333
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC----------ChhHHHHHHHhcccCcccccccCCceE
Q psy1695 92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTI 161 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~----------~~~~~~~L~~~le~~~~~~~~~~~~~~ 161 (202)
.+....... ....... ...+.+.....+..+|+|||+|.+ ....++.|..+++... ....+.+
T Consensus 97 ~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----~~~~~~~ 169 (272)
T 1d2n_A 97 SPDKMIGFS--ETAKCQA-MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----PQGRKLL 169 (272)
T ss_dssp CGGGCTTCC--HHHHHHH-HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----STTCEEE
T ss_pred CHHHhcCCc--hHHHHHH-HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----CCCCCEE
Confidence 322111111 1101111 122222233355789999999886 4455666666665421 0124566
Q ss_pred EEEeeCcCh
Q psy1695 162 FLFLSNSGG 170 (202)
Q Consensus 162 ~Iltsn~~~ 170 (202)
+|.|||...
T Consensus 170 ii~ttn~~~ 178 (272)
T 1d2n_A 170 IIGTTSRKD 178 (272)
T ss_dssp EEEEESCHH
T ss_pred EEEecCChh
Confidence 778887653
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=3.2e-14 Score=116.04 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=83.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+.+++.+..++.. .+.|..++++||||||||++|+++++.+.. +++.++.+. .+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~--------~~~~i~~~~-----~~ 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNA--------DMMFVNGSD-----CK 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE--------EEEEEETTT-----CC
T ss_pred HHHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC--------CEEEEcccc-----cC
Confidence 4699999998888777762 124557899999999999999999998633 333333222 11
Q ss_pred hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCC-hhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 102 HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~-~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.. .+...+.+.... ....|++|||++.++ .+.++.|+++++++. .++.||++||...
T Consensus 86 -~~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-------~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 -ID----FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-------SNCSIIITANNID 147 (324)
T ss_dssp -HH----HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-------GGCEEEEEESSGG
T ss_pred -HH----HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence 11 112222222222 245899999999999 999999999999865 6889999999765
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.52 E-value=6.2e-14 Score=119.46 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=82.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+.+++...+..+.. ...|.+++|+||||||||++|+++|+.+.. .+++.+..+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-------~~~~~v~~~~l~~ 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVS 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-------SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------CCEEEEeHHHHHh
Confidence 46899999999999888653332210 113457999999999999999999999622 2344444333322
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
.. .+ ..+.....+..........||||||+|.+.+ .+++.|+..++... ....+++||.+|
T Consensus 207 ~~---~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----~~~~~v~vI~at 278 (444)
T 2zan_A 207 KW---LG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGAT 278 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----CCCSSCEEEEEE
T ss_pred hh---cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----cCCCCEEEEecC
Confidence 11 11 0011122333344445568999999998832 35677777776521 122678889999
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 279 n~~~ 282 (444)
T 2zan_A 279 NIPW 282 (444)
T ss_dssp SCGG
T ss_pred CCcc
Confidence 8763
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.52 E-value=1.6e-13 Score=104.73 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=81.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
.+++|++.+++.+...+... .+.+++|+||+|||||++++.+++.+.. .+....++.+... ...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~---~~~~~~~~~~~~~-----~~~ 80 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNAS-----DER 80 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHG---GGGGGGEEEEETT-----CTT
T ss_pred HHHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhc---cccccceEEeccc-----ccc
Confidence 46899999998887776532 1224899999999999999999998755 2211122222211 111
Q ss_pred hhHHHHHHhHHHHHHhhh-----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 102 HVSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~-----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
... .+...+..... .....+++|||++.+++..++.|+++++... .++.+|++||...
T Consensus 81 ~~~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~~~~~~ 143 (226)
T 2chg_A 81 GID----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS 143 (226)
T ss_dssp CHH----HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred ChH----HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence 111 11122222222 2445899999999999999999999999865 6788889988653
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.52 E-value=1.4e-13 Score=110.78 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=83.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+.+.+......+.. ...+.+++|+||||||||++|+++++.+.. +++.+..+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~--------~~~~i~~~~l~~ 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA--------TFLNISAASLTS 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC--------EEEEEESTTTSS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--------CeEEeeHHHHhh
Confidence 46999999999999888664322110 113457999999999999999999998533 344444443333
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...+... .....+..........||+|||++.+. ...++.|+..++..... ....++++|.+|
T Consensus 93 ~~~~~~~----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~v~vi~~t 166 (297)
T 3b9p_A 93 KYVGDGE----KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--PDGDRIVVLAAT 166 (297)
T ss_dssp SSCSCHH----HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------CEEEEEEE
T ss_pred cccchHH----HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--CCCCcEEEEeec
Confidence 2222211 112333344445556899999998874 34566677777654310 112457888888
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 167 n~~~ 170 (297)
T 3b9p_A 167 NRPQ 170 (297)
T ss_dssp SCGG
T ss_pred CChh
Confidence 8653
No 33
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1e-13 Score=113.96 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=81.4
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++||+.+++.+...+... +.| +++|+||+|||||++|+++++.+.+ ......+...+. +....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g-------~~~-~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~-----~~~~~ 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG-------KLP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNA-----SDDRG 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT-------CCC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECT-----TSCCS
T ss_pred HhcCcHHHHHHHHHHHhcC-------CCc-eEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcC-----ccccc
Confidence 5899999988887766531 134 4899999999999999999999876 211111111111 11111
Q ss_pred hHHHHHHhHHHHHHhhh-----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 103 VSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~-----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+... ...+..... .....|++|||+|.++...++.|++++++++ .++.||+++|...
T Consensus 90 ~~~i----r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~n~~~ 151 (340)
T 1sxj_C 90 IDVV----RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYAH 151 (340)
T ss_dssp HHHH----HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred HHHH----HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-------CCeEEEEEecCcc
Confidence 2111 111211111 1236899999999999999999999999976 7888999998653
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.51 E-value=2.2e-13 Score=112.75 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=40.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++||+.+++.+............ .+.+++|+||||||||++|+++++.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI---AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4689999998887555444333221 2357999999999999999999999754
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.50 E-value=9.5e-14 Score=115.11 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=84.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+.+.+...+..+. ....|.+++|+||||||||++|+++|+.+.. +++.+..+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~i~~~~l~~ 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA--------TFFSISASSLTS 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC--------EEEEEEGGGGCC
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC--------eEEEEehHHhhc
Confidence 4699999999999998876433221 0124557999999999999999999998532 455555544433
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...+. ... ....+..........||||||+|.+.. .+++.|+..++.... ....+.++|.+|
T Consensus 156 ~~~g~---~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGE---GEK-MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---SSEDRILVVGAT 228 (357)
T ss_dssp SSTTH---HHH-HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------CCCCEEEEEEE
T ss_pred cccch---HHH-HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---cCCCCEEEEEec
Confidence 22221 111 123333444445568999999987733 356677777764210 112577888899
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 229 n~~~ 232 (357)
T 3d8b_A 229 NRPQ 232 (357)
T ss_dssp SCGG
T ss_pred CChh
Confidence 8753
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=115.82 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=82.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
++++|++.+++.+...+......+.. ...+.+++|+||||||||++|+++|+.+.. +++.+....+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~~ 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA--------TFFNISAASLTS 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEECSCCC--
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------cEEEeeHHHhhc
Confidence 36999999999999888664432110 113457999999999999999999998532 455555544433
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
...+. ... ....+..........||||||+|.+ ...+++.|+..++... .....+++||.+|
T Consensus 187 ~~~g~---~~~-~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~v~vI~at 259 (389)
T 3vfd_A 187 KYVGE---GEK-LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---SAGDDRVLVMGAT 259 (389)
T ss_dssp --------CHH-HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------CEEEEEEE
T ss_pred cccch---HHH-HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc---ccCCCCEEEEEec
Confidence 22111 111 1233333444455589999999887 3356667777776421 0112568889999
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 260 n~~~ 263 (389)
T 3vfd_A 260 NRPQ 263 (389)
T ss_dssp SCGG
T ss_pred CCch
Confidence 8743
No 37
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=5.2e-14 Score=114.36 Aligned_cols=120 Identities=8% Similarity=0.104 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL 105 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (202)
||+++++.+.+++... ++.+++|+||+|+|||++|+++++.... . .....++..++. . ....+
T Consensus 1 g~~~~~~~L~~~i~~~--------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~-~-~~~~~d~~~l~~-----~-~~~~~- 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------EGISILINGEDLSYPREVSLELPEYVEK-F-PPKASDVLEIDP-----E-GENIG- 63 (305)
T ss_dssp ---CHHHHHHHHHHTC--------SSEEEEEECSSSSHHHHHHHHHHHHHHT-S-CCCTTTEEEECC-----S-SSCBC-
T ss_pred ChHHHHHHHHHHHHCC--------CCcEEEEECCCCCCHHHHHHHHHHhCch-h-hccCCCEEEEcC-----C-cCCCC-
Confidence 7888888887777642 2347999999999999999999986321 0 000112222211 1 11121
Q ss_pred HHHHhHHHHHHhhhhC----CceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 106 YRLQLTNWIISNVTAC----DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 106 ~~~~l~~~~~~~l~~~----~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.. + .+.+.+.+... ++.|+||||+|+|+.+++|.|++.||+++ .+++||++||...+
T Consensus 64 id-~-ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-------~~t~fIl~t~~~~k 124 (305)
T 2gno_A 64 ID-D-IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWHY 124 (305)
T ss_dssp HH-H-HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGGG
T ss_pred HH-H-HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-------CCeEEEEEECChHh
Confidence 11 1 22233334333 35899999999999999999999999988 89999999986543
No 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.48 E-value=3.7e-13 Score=114.98 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=42.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++++||+.+++.+...+.....+.. .|.+++|+||||||||++|+++|+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~---~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKM---AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCC---CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5799999999998877765543322 445799999999999999999999975
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.48 E-value=1.6e-13 Score=102.46 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=77.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 99 (202)
+.++|++..++.+...+.. . .+.+++|+||+|||||++|+.+++.+.+..... ....++.+....+...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR----R----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG- 92 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS----S----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT-
T ss_pred cccccchHHHHHHHHHHhc----C----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc-
Confidence 4689999988888776654 1 333689999999999999999999975410000 0112222222221111
Q ss_pred CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
....+.....+...+..........|++|||++.+. ..+++.|..+++. .+..+|++||...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------GELHCVGATTLDE 162 (195)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------TSCCEEEEECHHH
T ss_pred CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------CCeEEEEeCCHHH
Confidence 111221222222222222223345699999999985 4557888888776 4677888887543
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=6.3e-14 Score=113.40 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=81.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
+++||+.+++.+...+.. . +.| +++|+||+|||||++|+++++.+.+ .+....++.++.+...+. ..
T Consensus 18 ~~~g~~~~~~~l~~~l~~----~---~~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~~~~--~~ 84 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER----K---NIP-HLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDERGI--DV 84 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT----T---CCC-CEEEESSSSSSHHHHHHHHHHHHHT---TCHHHHCEEEETTSTTCT--TT
T ss_pred HHhCCHHHHHHHHHHHhC----C---CCC-eEEEECcCCcCHHHHHHHHHHHhcC---CcccCCeEEEeCccccCh--HH
Confidence 599999988877655542 1 133 4899999999999999999999765 221122333322221110 01
Q ss_pred hHHHHHHhHHHHHHh--hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 103 VSLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~--l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
+. +. ....... +...+..|++|||++.++...++.|++++++.+ .++.+|++||...
T Consensus 85 ~~---~~-~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~ 143 (319)
T 2chq_A 85 VR---HK-IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS 143 (319)
T ss_dssp SS---HH-HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-------SSEEEEEEESCGG
T ss_pred HH---HH-HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence 11 10 1111111 112446899999999999999999999999866 7889999998754
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.47 E-value=8.5e-14 Score=112.78 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=80.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+...+..+. .-..|.+++|+||||||||++|+++|+.+.. +++.+..+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~--------~~i~v~~~~l~ 86 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELL 86 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--------EEEEECHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC--------CEEEEEhHHHH
Confidence 3699999999999988875322110 0123457999999999999999999998532 33333322211
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
. .+.+..... ...+..........|++|||+|.+.. .+++.|+..|+.-. ...++++
T Consensus 87 ~---~~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----~~~~v~v 157 (301)
T 3cf0_A 87 T---MWFGESEAN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFI 157 (301)
T ss_dssp H---HHHTTCTTH-HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----TTSSEEE
T ss_pred h---hhcCchHHH-HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----CCCCEEE
Confidence 0 000000000 12222333334458999999987543 34677888887421 2257889
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|.+||...
T Consensus 158 i~atn~~~ 165 (301)
T 3cf0_A 158 IGATNRPD 165 (301)
T ss_dssp EEEESCGG
T ss_pred EEecCCcc
Confidence 99998763
No 42
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.47 E-value=8.2e-14 Score=120.08 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=86.6
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF 91 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 91 (202)
.+..+.+.+.+.++||+.+++.+..++... . +++|+||||||||++|+++|+.+.. . ..+....
T Consensus 12 ~~~~l~~~l~~~ivGq~~~i~~l~~al~~~----~------~VLL~GpPGtGKT~LAraLa~~l~~---~---~~f~~~~ 75 (500)
T 3nbx_X 12 RISRLSSSLEKGLYERSHAIRLCLLAALSG----E------SVFLLGPPGIAKSLIARRLKFAFQN---A---RAFEYLM 75 (500)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHHHHT----C------EEEEECCSSSSHHHHHHHGGGGBSS---C---CEEEEEC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC----C------eeEeecCchHHHHHHHHHHHHHHhh---h---hHHHHHH
Confidence 467888999999999999998876665432 2 6899999999999999999998632 1 1111110
Q ss_pred c-----ccccCCCCchhHHHHHHhHHHHHHhhhhC---CceEEEEecCCCCChhHHHHHHHhcccCcccc-c--ccCCce
Q psy1695 92 N-----SRIHFPNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--ISFQNT 160 (202)
Q Consensus 92 ~-----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~---~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~--~~~~~~ 160 (202)
. +.+.+..... . ... .+.+ ...... ..+|++|||++++++.+++.|+++|+++.+.. + ......
T Consensus 76 ~~~~t~~dL~G~~~~~-~-~~~--~g~~-~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~ 150 (500)
T 3nbx_X 76 TRFSTPEEVFGPLSIQ-A-LKD--EGRY-ERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMR 150 (500)
T ss_dssp CTTCCHHHHHCCBC---------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCC
T ss_pred HhcCCHHHhcCcccHH-H-Hhh--chhH-HhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchh
Confidence 0 1111110000 0 000 0010 001111 13689999999999999999999999887542 2 233344
Q ss_pred EEEEeeCcChH
Q psy1695 161 IFLFLSNSGGT 171 (202)
Q Consensus 161 ~~Iltsn~~~~ 171 (202)
++|++||..++
T Consensus 151 ~iI~ATN~lpe 161 (500)
T 3nbx_X 151 LLVAASNELPE 161 (500)
T ss_dssp EEEEEESSCCC
T ss_pred hhhhccccCCC
Confidence 56888986443
No 43
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=2.3e-13 Score=111.82 Aligned_cols=129 Identities=6% Similarity=0.075 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhh------hcc
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHK------FNS 93 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~------~~~ 93 (202)
..|+.+.+.+..++... +.|.+++|+||+|+|||++|+++|+.+.+.... +.+..+..+ +..
T Consensus 5 pw~~~~~~~l~~~i~~~-------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp GGGHHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE
T ss_pred CchHHHHHHHHHHHHcC-------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 45677777766665531 245579999999999999999999999873111 000111111 111
Q ss_pred cccCCC-CchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 94 RIHFPN-ENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 94 ~~~~~~-~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
.+.... ....+ . ++ ...+.+.+.. +++.|+||||+|+|+.+++|.|++.+|+++ .+++||++||.
T Consensus 78 ~~~~~~~~~~~~-i-~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-------~~~~~Il~t~~ 147 (334)
T 1a5t_A 78 TLAPEKGKNTLG-V-DA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFLATRE 147 (334)
T ss_dssp EECCCTTCSSBC-H-HH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEEEESC
T ss_pred EEeccccCCCCC-H-HH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence 111110 11121 1 11 2233333333 345899999999999999999999999987 78999999987
Q ss_pred Ch
Q psy1695 169 GG 170 (202)
Q Consensus 169 ~~ 170 (202)
..
T Consensus 148 ~~ 149 (334)
T 1a5t_A 148 PE 149 (334)
T ss_dssp GG
T ss_pred hH
Confidence 53
No 44
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=7.2e-14 Score=114.79 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=79.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+.+++.+..++.. .. .| +++|+||||||||++|+++++.+.+. ......+...+. ....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKT~la~~la~~l~~~--~~~~~~~~~~~~-----~~~~ 101 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS----AN---LP-HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNA-----SDER 101 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC----TT---CC-CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECS-----SSCC
T ss_pred HHhhCCHHHHHHHHHHHhc----CC---CC-EEEEECCCCCCHHHHHHHHHHHhCCC--cccccceEEEcc-----cccc
Confidence 4699999998877666542 11 23 48999999999999999999997541 000011111111 1111
Q ss_pred hhHHHHHHhHHHHHHh------------hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 102 HVSLYRLQLTNWIISN------------VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~------------l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
......+. ....... .......|++|||++.+++..++.|+++++++. .++.||+++|..
T Consensus 102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~ 173 (353)
T 1sxj_D 102 GISIVREK-VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYV 173 (353)
T ss_dssp CHHHHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred chHHHHHH-HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------CCceEEEEeCch
Confidence 11111111 1111110 011234799999999999999999999999876 678899999866
Q ss_pred hH
Q psy1695 170 GT 171 (202)
Q Consensus 170 ~~ 171 (202)
..
T Consensus 174 ~~ 175 (353)
T 1sxj_D 174 TR 175 (353)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.47 E-value=2.7e-13 Score=110.20 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=83.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++|++.+++.+...+........ .+.+++|+||+|||||++|+++++.+.. +++.+..+.+ .
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~i~~~~~~--------~~~~~~~~~~-----~ 75 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELGV--------NLRVTSGPAI-----E 75 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCS---CCCCCEEECCTTCCCHHHHHHHHHHHTC--------CEEEECTTTC-----C
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCC---CCCcEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecccc-----C
Confidence 3699999999999888876543321 3346899999999999999999998633 2222222211 1
Q ss_pred hhHHHHHHhHHHHHHhhhh--CCceEEEEecCCCCChhHHHHHHHhcccCcccc--c---------ccCCceEEEEeeCc
Q psy1695 102 HVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q---------ISFQNTIFLFLSNS 168 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~~l~~--~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~--~---------~~~~~~~~Iltsn~ 168 (202)
.. ..+.+.+.. ....++||||++.++...++.|+++++++.+.. + ....+..+|++||.
T Consensus 76 ~~--------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 76 KP--------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp SH--------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred Ch--------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 11 112223333 345799999999999999999999999865321 0 12235678888885
Q ss_pred C
Q psy1695 169 G 169 (202)
Q Consensus 169 ~ 169 (202)
.
T Consensus 148 ~ 148 (324)
T 1hqc_A 148 P 148 (324)
T ss_dssp C
T ss_pred c
Confidence 4
No 46
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.9e-13 Score=110.69 Aligned_cols=125 Identities=15% Similarity=0.275 Sum_probs=81.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN 101 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202)
++++||+.+++.+...+.. . +.|. ++|+||+|+|||++|+.+++.+.+ ......++..+. ....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~---~~~~-~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~-----~~~~ 84 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----G---NMPH-MIISGMPGIGKTTSVHCLAHELLG---RSYADGVLELNA-----SDDR 84 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----C---CCCC-EEEECSTTSSHHHHHHHHHHHHHG---GGHHHHEEEECT-----TSCC
T ss_pred HHHHCCHHHHHHHHHHHHc----C---CCCe-EEEECcCCCCHHHHHHHHHHHhcC---CcccCCEEEecC-----cccc
Confidence 3699999999888777653 1 1343 899999999999999999999765 211111221111 1111
Q ss_pred hhHHHHHHhHHHHHH---hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 102 HVSLYRLQLTNWIIS---NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 102 ~~~~~~~~l~~~~~~---~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
......+ +...+.. .+...+..|+||||++.++...++.|+++++++. .++.||++||...
T Consensus 85 ~~~~i~~-~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~~~~~ 148 (323)
T 1sxj_B 85 GIDVVRN-QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQSN 148 (323)
T ss_dssp SHHHHHT-HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCGG
T ss_pred ChHHHHH-HHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-------CCceEEEEeCChh
Confidence 1221111 1111110 0102346899999999999999999999999876 7888999987643
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.46 E-value=1.2e-13 Score=103.03 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=77.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 99 (202)
+.++|++.+++.+.+.+.. . .+.+++|+||+|||||++|+.+++.+....... ....++.+....+...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~----~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----R----TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG- 92 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----S----SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH-
T ss_pred chhhcchHHHHHHHHHHhC----C----CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC-
Confidence 4689999988888776643 1 233689999999999999999999975410000 0111221211111100
Q ss_pred CchhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC---------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 100 ENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~---------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
....+.....+. .+...+... ...+++|||++.+. ..+++.|..++++ .+..+|+++|..
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------~~~~ii~~~~~~ 162 (187)
T 2p65_A 93 AKYRGDFEERLK-SILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------GELRCIGATTVS 162 (187)
T ss_dssp CCSHHHHHHHHH-HHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------TCSCEEEEECHH
T ss_pred CCchhHHHHHHH-HHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------CCeeEEEecCHH
Confidence 011111111112 222233333 44699999999986 5678888888876 567788888865
Q ss_pred h
Q psy1695 170 G 170 (202)
Q Consensus 170 ~ 170 (202)
.
T Consensus 163 ~ 163 (187)
T 2p65_A 163 E 163 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.46 E-value=2.4e-13 Score=115.82 Aligned_cols=105 Identities=24% Similarity=0.295 Sum_probs=64.3
Q ss_pred hhCCChHHHH---HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695 22 QHVHGQELAI---SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP 98 (202)
Q Consensus 22 ~~liGq~~a~---~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
++++||+.++ ..+...+... ++.+++|+||||||||++|+++++.+.. .++.+....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~~--------~f~~l~a~~---- 85 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYANA--------DVERISAVT---- 85 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTTC--------EEEEEETTT----
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEEecc----
Confidence 4699999998 6666666542 2237999999999999999999998643 233222111
Q ss_pred CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
.......+. ..............|+||||+++++...++.|++.++++
T Consensus 86 --~~~~~ir~~-~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~ 133 (447)
T 3pvs_A 86 --SGVKEIREA-IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG 133 (447)
T ss_dssp --CCHHHHHHH-HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT
T ss_pred --CCHHHHHHH-HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC
Confidence 111111111 111112222345689999999999999999999999984
No 49
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.45 E-value=2.5e-13 Score=116.97 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=86.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+...+..+. ....|.+++|+||||||||++|+++++.+. .+++.++++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--------~~fv~vn~~~l~ 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIM 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--------SEEEEEEHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--------CCEEEEEchHhh
Confidence 3699999999999988876432210 012455799999999999999999999852 355555554443
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
....+. ....+...+ .........+|||||+|.+.+ .+++.|+.+|+... ...+.++|.+
T Consensus 276 ~~~~g~---~~~~~~~~f-~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaa 346 (489)
T 3hu3_A 276 SKLAGE---SESNLRKAF-EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAA 346 (489)
T ss_dssp TSCTTH---HHHHHHHHH-HHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEE
T ss_pred hhhcch---hHHHHHHHH-HHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEe
Confidence 322221 111222222 223344457999999965543 57888999988532 2257888899
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
||...
T Consensus 347 Tn~~~ 351 (489)
T 3hu3_A 347 TNRPN 351 (489)
T ss_dssp ESCGG
T ss_pred cCCcc
Confidence 98763
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.45 E-value=6.7e-13 Score=112.51 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=52.9
Q ss_pred CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC---C---CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY---H---NTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~---~---~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.....+.+.|++.|+||+.+++.+..++...+.... . ...|.+++|+||||||||++|+++|+.+..
T Consensus 4 ~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467889999999999999999999999866422110 0 013457999999999999999999998643
No 51
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=5e-13 Score=110.50 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=82.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---- 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---- 92 (202)
++++||+.+++.+..++... +.|..++|+||+|||||++|+++++.+.+.... +....+..+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCS
T ss_pred hhccCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCC
Confidence 35999999999888877642 134478999999999999999999998652110 00001111100
Q ss_pred --ccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695 93 --SRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 166 (202)
Q Consensus 93 --~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts 166 (202)
..+......... . ...+.+.+.. ....|++|||++.++...++.|++.+++.+ .++++|++|
T Consensus 89 ~~~~~~~~~~~~~~----~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-------~~~~~Il~~ 156 (373)
T 1jr3_A 89 DLIEIDAASRTKVE----D-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLAT 156 (373)
T ss_dssp SCEEEETTCSCCSS----C-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-------SSEEEEEEE
T ss_pred ceEEecccccCCHH----H-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-------CceEEEEEe
Confidence 000000001111 1 1222233332 235899999999999999999999999866 788899998
Q ss_pred CcCh
Q psy1695 167 NSGG 170 (202)
Q Consensus 167 n~~~ 170 (202)
|...
T Consensus 157 ~~~~ 160 (373)
T 1jr3_A 157 TDPQ 160 (373)
T ss_dssp SCGG
T ss_pred CChH
Confidence 7544
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.42 E-value=2.3e-12 Score=110.42 Aligned_cols=131 Identities=20% Similarity=0.200 Sum_probs=81.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+... ..+ -+...|.+++|+||||||||++|++++..+.. +++.+..+.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--------~f~~is~~~~~ 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--------PFFHISGSDFV 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--------CEEEEEGGGTT
T ss_pred HHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--------CeeeCCHHHHH
Confidence 36999999999998877653 211 01234557999999999999999999998532 34444444332
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+.. ... ...+..........||||||+|.+.. ..++.|+..|+.-. ...+.++
T Consensus 87 ~~~~g~~---~~~-~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----~~~~viV 157 (476)
T 2ce7_A 87 ELFVGVG---AAR-VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----SKEGIIV 157 (476)
T ss_dssp TCCTTHH---HHH-HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----GGGTEEE
T ss_pred HHHhccc---HHH-HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----CCCCEEE
Confidence 2222111 111 22233333344457999999988754 24566776666311 1257888
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|.+||...
T Consensus 158 IaaTn~~~ 165 (476)
T 2ce7_A 158 MAATNRPD 165 (476)
T ss_dssp EEEESCGG
T ss_pred EEecCChh
Confidence 99998753
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=8.7e-13 Score=101.78 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=80.7
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhcc---
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNS--- 93 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~--- 93 (202)
+.++|++.+++.+..++... +.|..++|+||+|+|||++++.+++.+........ ...+......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 95 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCS
T ss_pred HHHhCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCc
Confidence 46999999999888777642 13346899999999999999999998755110000 0000000000
Q ss_pred ccc-CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 94 RIH-FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 94 ~~~-~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
.+. ........ ... ...+...+. .....+|+|||++.+++..++.|++.+++.. .+..+|++||.
T Consensus 96 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~t~~ 165 (250)
T 1njg_A 96 DLIEIDAASRTK--VED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTD 165 (250)
T ss_dssp SEEEEETTCGGG--HHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEESC
T ss_pred ceEEecCccccc--HHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-------CceEEEEEeCC
Confidence 000 00011111 111 122222222 1234799999999999999999999998764 67888888876
Q ss_pred Ch
Q psy1695 169 GG 170 (202)
Q Consensus 169 ~~ 170 (202)
..
T Consensus 166 ~~ 167 (250)
T 1njg_A 166 PQ 167 (250)
T ss_dssp GG
T ss_pred hH
Confidence 44
No 54
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.40 E-value=7.6e-13 Score=119.33 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=86.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++|-|.+.+++.+.+.+.-.+.++. ....|.++||+||||||||++|+++|+.+.. .++.+..+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--------~~~~v~~~~l~ 275 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--------FFFLINGPEIM 275 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--------EEEEEEHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--------eEEEEEhHHhh
Confidence 4689999999999988876444332 1235678999999999999999999998533 45555544443
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
....+. .... ...+.+........||+|||+|.+-+ .+.+.|+..|+.-. +..++++|.+
T Consensus 276 sk~~ge---se~~-lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----~~~~V~VIaa 346 (806)
T 3cf2_A 276 SKLAGE---SESN-LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAA 346 (806)
T ss_dssp SSCTTH---HHHH-HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----GGGCEEEEEE
T ss_pred cccchH---HHHH-HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----ccCCEEEEEe
Confidence 332222 2222 23333334445568999999987743 25666777776532 2256788888
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
||...
T Consensus 347 TN~~d 351 (806)
T 3cf2_A 347 TNRPN 351 (806)
T ss_dssp CSSTT
T ss_pred cCChh
Confidence 88764
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.40 E-value=2e-12 Score=102.06 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=77.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+.. +..+. ....|.+++|+||||||||++|+++++.+.. +++.+....+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~i~~~~~~ 82 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--------PFFTISGSDFV 82 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--------CEEEECSCSST
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--------CEEEEeHHHHH
Confidence 4699999999999877654 22211 0123557999999999999999999998532 23333333332
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+... .. ...+.+........+++|||+|.+.. ..++.++..++... ...+.++
T Consensus 83 ~~~~~~~~---~~-~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~v 153 (257)
T 1lv7_A 83 EMFVGVGA---SR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIV 153 (257)
T ss_dssp TSCCCCCH---HH-HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEE
T ss_pred HHhhhhhH---HH-HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEE
Confidence 21111111 11 12222223333457999999966543 24455665555321 2256788
Q ss_pred EEeeCcCh
Q psy1695 163 LFLSNSGG 170 (202)
Q Consensus 163 Iltsn~~~ 170 (202)
|.+||...
T Consensus 154 I~~tn~~~ 161 (257)
T 1lv7_A 154 IAATNRPD 161 (257)
T ss_dssp EEEESCTT
T ss_pred EEeeCCch
Confidence 88888763
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.39 E-value=1.3e-13 Score=109.53 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=75.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+.. +..+. ....|.+++|+||||||||++|+++|+.+.. +++.+....+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~ 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--------PFFSMGGSSFI 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--------CCCCCCSCTTT
T ss_pred HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEechHHHH
Confidence 3599999999999887764 21110 0123446899999999999999999998643 23333322221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh---------------HHHHHHHhcccCcccccccCCceE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG---------------LLDVIIPFIDHHAVYNQISFQNTI 161 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~---------------~~~~L~~~le~~~~~~~~~~~~~~ 161 (202)
....+... ..+. .+.+........|++|||+|.+... .++.|+..++... ....+.+
T Consensus 82 ~~~~~~~~---~~~~-~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~ 153 (268)
T 2r62_A 82 EMFVGLGA---SRVR-DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----SENAPVI 153 (268)
T ss_dssp TSCSSSCS---SSSS-TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----CSCSCCE
T ss_pred HhhcchHH---HHHH-HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----cCCCCEE
Confidence 11111000 0000 1111122334579999999988653 3444555554321 1224578
Q ss_pred EEEeeCcCh
Q psy1695 162 FLFLSNSGG 170 (202)
Q Consensus 162 ~Iltsn~~~ 170 (202)
+|.|||...
T Consensus 154 vi~ttn~~~ 162 (268)
T 2r62_A 154 VLAATNRPE 162 (268)
T ss_dssp EEECBSCCT
T ss_pred EEEecCCch
Confidence 888988774
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.37 E-value=1.5e-12 Score=106.43 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 92 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 92 (202)
+..+...+.+.++||+.+++.+..++.. .. +++|+||||||||++|+++++.+.. ++..+.+
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~----~~------~vll~G~pGtGKT~la~~la~~~~~--------~~~~i~~ 79 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT----GG------HILLEGVPGLAKTLSVNTLAKTMDL--------DFHRIQF 79 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH----TC------CEEEESCCCHHHHHHHHHHHHHTTC--------CEEEEEC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc----CC------eEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEec
Confidence 5667788888999999999888776654 22 6899999999999999999998643 1111111
Q ss_pred ccccCCCCchhHH--HHHHhHHHHHHhhhhCC--ceEEEEecCCCCChhHHHHHHHhcccCcccc-c--c-cCCceEEEE
Q psy1695 93 SRIHFPNENHVSL--YRLQLTNWIISNVTACD--RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--I-SFQNTIFLF 164 (202)
Q Consensus 93 ~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~--~-~~~~~~~Il 164 (202)
.... ......+. +... .+.. .+...+ .+|++|||++++++..++.|++.++++.+.. + . .-.+.++|.
T Consensus 80 ~~~~-~~~~l~g~~~~~~~-~~~~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 80 TPDL-LPSDLIGTMIYNQH-KGNF--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp CTTC-CHHHHHEEEEEETT-TTEE--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CCCC-ChhhcCCceeecCC-CCce--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 0000 00000000 0000 0000 011111 2699999999999999999999999876432 1 1 123456677
Q ss_pred eeCc
Q psy1695 165 LSNS 168 (202)
Q Consensus 165 tsn~ 168 (202)
|+|.
T Consensus 156 t~np 159 (331)
T 2r44_A 156 TQNP 159 (331)
T ss_dssp EECT
T ss_pred ecCC
Confidence 7774
No 58
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.37 E-value=1.2e-13 Score=124.58 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=89.1
Q ss_pred hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
.+.|.+.+++.+.+.+...+.++. ....|.++||+||||||||.+|+++|.++.. +++.+..+.+..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------~f~~v~~~~l~s 549 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELLT 549 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--------EEEECCHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--------ceEEeccchhhc
Confidence 577889999998888765433321 1234557999999999999999999999533 455554444433
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEEE
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL 163 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~I 163 (202)
.+.+... .....+....+.....||||||+|.+-. .+.+.|+..|+.-. ...++++|
T Consensus 550 ~~vGese----~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----~~~~V~vi 620 (806)
T 3cf2_A 550 MWFGESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII 620 (806)
T ss_dssp TTCSSCH----HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----SSSSEEEE
T ss_pred cccchHH----HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----CCCCEEEE
Confidence 3322211 1133444445555568999999987632 25677887777532 22567778
Q ss_pred EeeCcChHHHHHHHHHHHHhhhH
Q psy1695 164 FLSNSGGTEIMNTFLELRKSECI 186 (202)
Q Consensus 164 ltsn~~~~~i~~~~~~~~~~~~~ 186 (202)
.+||... .+-.+ +++.||.
T Consensus 621 ~aTN~p~-~lD~A---llRpgRf 639 (806)
T 3cf2_A 621 GATNRPD-IIDPA---ILRPGRL 639 (806)
T ss_dssp CC-CCSS-SSCHH---HHSTTTS
T ss_pred EeCCCch-hCCHh---HcCCCcc
Confidence 8888764 33333 3455554
No 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=2.7e-12 Score=105.62 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=82.5
Q ss_pred ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--c
Q psy1695 7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--T 84 (202)
Q Consensus 7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~ 84 (202)
|+.+|+...+ ++++||+.+++.+.+++. .. .+.|. ++|+||+|+|||++++++++.+.+...... .
T Consensus 4 w~~kyrP~~~-----~~~vg~~~~~~~l~~~~~---~~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 4 WVDKYRPKSL-----NALSHNEELTNFLKSLSD---QP---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp CTTTTCCCSG-----GGCCSCHHHHHHHHTTTT---CT---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred chhccCCCCH-----HHhcCCHHHHHHHHHHHh---hC---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 3445555544 359999988877655541 22 12444 899999999999999999997655210000 0
Q ss_pred -cch-------hhh------hcccccCCCCchhHHHHHHhHHHHHHhhh-------------hCCceEEEEecCCCCChh
Q psy1695 85 -SRF-------VHK------FNSRIHFPNENHVSLYRLQLTNWIISNVT-------------ACDRAIFIFDEVDKFPKG 137 (202)
Q Consensus 85 -~~~-------~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------------~~~~~viiiDEid~~~~~ 137 (202)
..+ ... ....+.....+... ...+...+..... ..+..|++|||++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~ 149 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNND--RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD 149 (354)
T ss_dssp --------------CCEECSSEEEECCC----CC--HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH
T ss_pred ceeecccccccceeeeecccceEEecHhhcCCcc--hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH
Confidence 000 000 00000001000000 0001111211111 124579999999999999
Q ss_pred HHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 138 LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 138 ~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
.++.|++.+++.. .++.||++||....
T Consensus 150 ~~~~L~~~le~~~-------~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 150 AQAALRRTMEKYS-------KNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHHHHHHHST-------TTEEEEEEESCSCS
T ss_pred HHHHHHHHHHhhc-------CCCEEEEEeCCHHH
Confidence 9999999999865 67889999987543
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.33 E-value=5.7e-12 Score=102.68 Aligned_cols=137 Identities=8% Similarity=0.058 Sum_probs=82.3
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-C-ccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G-TSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~ 100 (202)
.+.|++.-++.+..++...+... .|.+++++||||||||++++.+++.+....... . .-.++.+++..+..+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 48899999999999999887653 566899999999999999999999986411010 0 11223333222111000
Q ss_pred ch-------------hHHHHHHhHHHHHHhh--hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 101 NH-------------VSLYRLQLTNWIISNV--TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 101 ~~-------------~~~~~~~l~~~~~~~l--~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.+ .+...+.+ ..+...+ ......|++|||+|.+. .++.|..+++-.. .+..+.++|++
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L-~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----~~~s~~~vI~i 169 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEAL-NFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----SKNSKLSIICV 169 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHH-HHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----CSSCCEEEEEE
T ss_pred HHHHHHHHhcCCCCCchHHHHHH-HHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc----ccCCcEEEEEE
Confidence 00 00000111 1111221 22345799999999998 5677777765211 12367899999
Q ss_pred eCcCh
Q psy1695 166 SNSGG 170 (202)
Q Consensus 166 sn~~~ 170 (202)
+|...
T Consensus 170 ~n~~d 174 (318)
T 3te6_A 170 GGHNV 174 (318)
T ss_dssp CCSSC
T ss_pred ecCcc
Confidence 98763
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.9e-12 Score=107.35 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=80.2
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc--CcC-ccchhhhhccccc
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK--DKG-TSRFVHKFNSRIH 96 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~--~~~-~~~~~~~~~~~~~ 96 (202)
..+.++|++..++.+...+....... .|.+++|+||+|||||++|+.+++.+..... .+. ...++.+++....
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNE----VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTC----CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 34789999999999999988876542 3447999999999999999999998743100 000 1122222221111
Q ss_pred ---------------CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhH-HHH-HHHhcccCcccccccCCc
Q psy1695 97 ---------------FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGL-LDV-IIPFIDHHAVYNQISFQN 159 (202)
Q Consensus 97 ---------------~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~-~~~-L~~~le~~~~~~~~~~~~ 159 (202)
+......+.....+...+...+...+. ||+|||++.+.... ++. +..+++.. .+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~--------~~ 164 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD--------AN 164 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS--------SC
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC--------cc
Confidence 000000000001112333344444433 99999999987542 455 44444432 57
Q ss_pred eEEEEeeCcC
Q psy1695 160 TIFLFLSNSG 169 (202)
Q Consensus 160 ~~~Iltsn~~ 169 (202)
..+|+|||..
T Consensus 165 ~~iI~~t~~~ 174 (384)
T 2qby_B 165 ISVIMISNDI 174 (384)
T ss_dssp EEEEEECSST
T ss_pred eEEEEEECCC
Confidence 8888888865
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=1.5e-11 Score=101.92 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=85.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCce--EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKAL--AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------ 93 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl--~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------ 93 (202)
+.++|++..++.+..++.....+. .+. +++|+||+|||||++++.+++.+.. .. ...++.+++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~----~~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~-~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWELYKD---KT-TARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHHHTT---SC-CCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----CCCCCeEEEECCCCCCHHHHHHHHHHHHhh---hc-CeeEEEEeCccCCCHH
Confidence 569999999999999998876543 233 7899999999999999999998754 20 0111111111
Q ss_pred --------cccCCCCchhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695 94 --------RIHFPNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF 164 (202)
Q Consensus 94 --------~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il 164 (202)
.+....+.. +.....+...+...+... ...||+|||++.+++..++.|+.+++...- ....+..+|+
T Consensus 89 ~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~---~~~~~~~iI~ 164 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRR-GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK---LGAFRIALVI 164 (389)
T ss_dssp HHHHHHHHHTTCCCCSS-CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH---HSSCCEEEEE
T ss_pred HHHHHHHHHhCccCCCC-CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC---CCcCCEEEEE
Confidence 010000000 000111223333333333 357999999999999999999999876320 0013778889
Q ss_pred eeCcCh
Q psy1695 165 LSNSGG 170 (202)
Q Consensus 165 tsn~~~ 170 (202)
+||...
T Consensus 165 ~~~~~~ 170 (389)
T 1fnn_A 165 VGHNDA 170 (389)
T ss_dssp EESSTH
T ss_pred EECCch
Confidence 888753
No 63
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=2.6e-13 Score=119.42 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=87.7
Q ss_pred chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc---CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695 12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR---YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV 88 (202)
Q Consensus 12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~---~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 88 (202)
.+..+.+.+...++||+.+++.+..++....... ...+...+++|+||||||||++|+++|+.+.. ...... .
T Consensus 285 ~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~-~ 360 (595)
T 3f9v_A 285 IRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR---AVYTTG-K 360 (595)
T ss_dssp GGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---EECCCT-T
T ss_pred HHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC---ceecCC-C
Confidence 4677888899999999998877654443221000 00012236999999999999999999988533 100000 0
Q ss_pred hhhcccccCCCC-c-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c---ccCCce
Q psy1695 89 HKFNSRIHFPNE-N-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q---ISFQNT 160 (202)
Q Consensus 89 ~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~---~~~~~~ 160 (202)
......+..... . ..+.+.. ..+ .+..+..+|++|||++++++..++.|+++|+++.++. + .-..++
T Consensus 361 ~~~~~~l~~~~~~~~~~g~~~~-~~G----~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 361 GSTAAGLTAAVVREKGTGEYYL-EAG----ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp CSTTTTSEEECSSGGGTSSCSE-EEC----HHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccccccccceeeeccccccccc-cCC----eeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 000011100000 0 0000000 001 1112235799999999999999999999999987541 2 123567
Q ss_pred EEEEeeCcC
Q psy1695 161 IFLFLSNSG 169 (202)
Q Consensus 161 ~~Iltsn~~ 169 (202)
.+|.|||..
T Consensus 436 ~vIaatNp~ 444 (595)
T 3f9v_A 436 AVIAAGNPK 444 (595)
T ss_dssp EEEEEECCT
T ss_pred EEEEEcCCc
Confidence 899999975
No 64
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=8.2e-12 Score=108.24 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhcc-------C--CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNR-------Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~-------~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 92 (202)
++++|++.+++.+..++..+.... . ....+.+++|+||||||||++|+++|+.+.. .++.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--------~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--------DILEQNA 110 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--------EEEEECT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--------CEEEEeC
Confidence 369999999999999988754221 0 0012347999999999999999999999632 2222222
Q ss_pred ccccCCCCchhHHHHHHhHH-----HHHHh--------hhhCCceEEEEecCCCCChhH---HHHHHHhcccCccccccc
Q psy1695 93 SRIHFPNENHVSLYRLQLTN-----WIISN--------VTACDRAIFIFDEVDKFPKGL---LDVIIPFIDHHAVYNQIS 156 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~-----~~~~~--------l~~~~~~viiiDEid~~~~~~---~~~L~~~le~~~~~~~~~ 156 (202)
+..... .. ....+.. .+.+. .......||||||+|.++... .+.|.+++++.
T Consensus 111 s~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------- 178 (516)
T 1sxj_A 111 SDVRSK---TL--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------- 178 (516)
T ss_dssp TSCCCH---HH--HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------
T ss_pred CCcchH---HH--HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------
Confidence 211000 00 0000000 00000 112345899999999997744 47888888873
Q ss_pred CCceEEEEeeCc
Q psy1695 157 FQNTIFLFLSNS 168 (202)
Q Consensus 157 ~~~~~~Iltsn~ 168 (202)
+..+|+++|.
T Consensus 179 --~~~iIli~~~ 188 (516)
T 1sxj_A 179 --STPLILICNE 188 (516)
T ss_dssp --SSCEEEEESC
T ss_pred --CCCEEEEEcC
Confidence 3445566654
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=3.1e-11 Score=90.24 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHH
Q psy1695 27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY 106 (202)
Q Consensus 27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (202)
|..+++.+.+.+..+... .+..++|+||+|+|||+++++++..+... .+....++ ....+.. .....+
T Consensus 19 ~~~~~~~~~~~~~~~~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~g~~~~~~--~~~~~~~---~~~~~~ 86 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPE-----EGKGLTFVGSPGVGKTHLAVATLKAIYEK--KGIRGYFF--DTKDLIF---RLKHLM 86 (180)
T ss_dssp HHHHHHHHHHHHHSCCGG-----GCCEEEECCSSSSSHHHHHHHHHHHHHHH--SCCCCCEE--EHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHhcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHH--cCCeEEEE--EHHHHHH---HHHHHh
Confidence 455555554444433211 23368999999999999999999997531 22111111 1110000 000000
Q ss_pred HHHhHHHHHHhhhhCCceEEEEecCC--CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695 107 RLQLTNWIISNVTACDRAIFIFDEVD--KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 173 (202)
Q Consensus 107 ~~~l~~~~~~~l~~~~~~viiiDEid--~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i 173 (202)
.......+...+. ..++++|||++ .+++...+.|.++++... .++..+|+|||...+.+
T Consensus 87 ~~~~~~~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~------~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 87 DEGKDTKFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRY------NNLKSTIITTNYSLQRE 147 (180)
T ss_dssp HHTCCSHHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH------HTTCEEEEECCCCSCC-
T ss_pred cCchHHHHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH------HcCCCEEEEcCCChhHh
Confidence 0000001111222 34799999998 567777888888886531 14578899999987753
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=5.1e-12 Score=104.56 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=79.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCccchhhhhcccc-----
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRI----- 95 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~----- 95 (202)
+.++|++..++.+...+....... .+.+++|+||+|||||++++.+++.+..... .+....++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE----KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC----CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 579999999999988877654322 3447899999999999999999998743100 000112222221110
Q ss_pred ---------cCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCCCCChh--HHHHHHHhcccCccccccc-CCceEE
Q psy1695 96 ---------HFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQIS-FQNTIF 162 (202)
Q Consensus 96 ---------~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~-~~~~~~ 162 (202)
....+. .+.....+...+...+.... ..||+|||++.+... .++.|..+++.... .. ..+..+
T Consensus 95 ~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~---~~~~~~~~~ 170 (387)
T 2v1u_A 95 VASAIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE---LGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC---C-----CEE
T ss_pred HHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh---cCCCceEEE
Confidence 000000 00001112333444443332 469999999999876 67777776654210 00 257788
Q ss_pred EEeeCcC
Q psy1695 163 LFLSNSG 169 (202)
Q Consensus 163 Iltsn~~ 169 (202)
|++||..
T Consensus 171 I~~t~~~ 177 (387)
T 2v1u_A 171 VGITNSL 177 (387)
T ss_dssp EEECSCS
T ss_pred EEEECCC
Confidence 8888876
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.26 E-value=4.9e-11 Score=95.37 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=74.9
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|.+.+++.+.+.+...+.++. +-..|.+++|+||||||||++++++|..+.. .++.+....+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--------~~i~i~g~~l~ 81 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--------NFISVKGPELL 81 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEEETTTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--------CEEEEEcHHHH
Confidence 3588899999988877643221110 0223446999999999999999999998532 23333332221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
.. +.+..... ...+.+........++++||++.+.. ...+.++..|+.+. .....+++.+
T Consensus 82 ~~---~~~~~~~~-i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----~~~~~i~ia~ 152 (274)
T 2x8a_A 82 NM---YVGESERA-VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----ARQQVFIMAA 152 (274)
T ss_dssp SS---TTHHHHHH-HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----STTCEEEEEE
T ss_pred hh---hhhHHHHH-HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----ccCCEEEEee
Confidence 11 12211111 22233333233457999999987532 23455555555442 2234555666
Q ss_pred eCcChHHHHH
Q psy1695 166 SNSGGTEIMN 175 (202)
Q Consensus 166 sn~~~~~i~~ 175 (202)
+|.. +.+.+
T Consensus 153 tn~p-~~LD~ 161 (274)
T 2x8a_A 153 TNRP-DIIDP 161 (274)
T ss_dssp ESCG-GGSCH
T ss_pred cCCh-hhCCH
Confidence 6654 44433
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.25 E-value=2.4e-12 Score=105.57 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=36.4
Q ss_pred ceEEEEecCCCCChhHHHHHHHhcccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SFQNTIFLFLSNSGG 170 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~~~~~---~~~---~~~~~~~Iltsn~~~ 170 (202)
.++++|||++++++..++.|+++++++... .+. ...+.++|.++|...
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~ 198 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE 198 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC
Confidence 579999999999999999999999986421 111 113678889999643
No 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.24 E-value=6e-12 Score=95.70 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc----cCCC
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI----HFPN 99 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 99 (202)
+++.......+.+.+..++........|.+++|+||+|||||++|+++++.+.. .+. .++.+....+ ....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~ 101 (202)
T 2w58_A 27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RNV--SSLIVYVPELFRELKHSL 101 (202)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTC--CEEEEEHHHHHHHHHHC-
T ss_pred ccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCC--eEEEEEhHHHHHHHHHHh
Confidence 454433333333444444433210112357899999999999999999999765 321 1111111110 0000
Q ss_pred -CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC--ChhHHHHHH-HhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695 100 -ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF--PKGLLDVII-PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN 175 (202)
Q Consensus 100 -~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~--~~~~~~~L~-~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~ 175 (202)
.... ..+.+.+.. .++++|||++.. +...+..++ .+++... ..+..+|+|||...+.+..
T Consensus 102 ~~~~~--------~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~------~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 102 QDQTM--------NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRM------FENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp --CCC--------HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHH------HTTCCEEEEESSCHHHHHH
T ss_pred ccchH--------HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHH------hCCCCEEEEcCCCHHHHHH
Confidence 0000 111122232 259999999664 333344333 4554321 1456789999999887766
Q ss_pred HH
Q psy1695 176 TF 177 (202)
Q Consensus 176 ~~ 177 (202)
.+
T Consensus 166 ~~ 167 (202)
T 2w58_A 166 HL 167 (202)
T ss_dssp HS
T ss_pred HH
Confidence 53
No 70
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.22 E-value=1.8e-11 Score=104.08 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=72.1
Q ss_pred HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695 20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN 99 (202)
Q Consensus 20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
+++.++|+.... ...++......+. .+.+++|+||+|+|||++|+++++.+.. ......++.+....+
T Consensus 104 fd~fv~g~~n~~--a~~~~~~~a~~~~---~~~~lll~Gp~G~GKTtLa~aia~~l~~---~~~~~~v~~v~~~~~---- 171 (440)
T 2z4s_A 104 FENFVVGPGNSF--AYHAALEVAKHPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF---- 171 (440)
T ss_dssp GGGCCCCTTTHH--HHHHHHHHHHSTT---SSCCEEEECSSSSSHHHHHHHHHHHHHH---HCCSSCEEEEEHHHH----
T ss_pred hhhcCCCCchHH--HHHHHHHHHhCCC---CCCeEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHH----
Confidence 334455765443 2233444443332 2447899999999999999999999754 100111222211111
Q ss_pred CchhHHHHHHhH----HHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695 100 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 100 ~~~~~~~~~~l~----~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~ 172 (202)
...+...+. ..+..... ...+|++|||++.+.. ..++.|+.+++... ..+..+|++|+.....
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~------~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 172 ---LNDLVDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELH------DSGKQIVICSDREPQK 240 (440)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH------TTTCEEEEEESSCGGG
T ss_pred ---HHHHHHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHH------HCCCeEEEEECCCHHH
Confidence 000111001 11111111 1457999999999986 67888888876521 0345677788775544
No 71
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.21 E-value=1.1e-10 Score=100.65 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=76.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.++..+.+.+... ..+. +...|.+++|+||||||||++|++++..+.. .++.+....+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--------~~i~i~g~~~~ 101 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------PFITASGSDFV 101 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--------CEEEEEGGGGT
T ss_pred HHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEehhHHH
Confidence 46999999999998776653 2211 1224557999999999999999999998532 34444443332
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhC---CceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCc
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQN 159 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~---~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~ 159 (202)
... .+.. ...+...+... ...+++|||+|.+.. ..++.|+..|+.+. ....
T Consensus 102 ~~~---~g~~----~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----~~~~ 169 (499)
T 2dhr_A 102 EMF---VGVG----AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTA 169 (499)
T ss_dssp SSC---TTHH----HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----SSCC
T ss_pred Hhh---hhhH----HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----cCcc
Confidence 211 1211 12233333332 237999999987642 24456666666443 1134
Q ss_pred eEEEEeeCcC
Q psy1695 160 TIFLFLSNSG 169 (202)
Q Consensus 160 ~~~Iltsn~~ 169 (202)
.++|.+||..
T Consensus 170 viviAatn~p 179 (499)
T 2dhr_A 170 IVVMAATNRP 179 (499)
T ss_dssp CEEEECCSCG
T ss_pred EEEEEecCCh
Confidence 5666666654
No 72
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.21 E-value=8.3e-11 Score=98.44 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=88.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC-----
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF----- 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----- 97 (202)
.++|+..+++.+.+.+....... ..++++|++||||+++|++++..... . ..+|+.++++.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~------~~vli~Ge~GtGK~~lAr~ih~~s~r---~--~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAE------CPVLITGESGVGKEVVARLIHKLSDR---S--KEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCC------SCEEEECSTTSSHHHHHHHHHHHSTT---T--TSCEEEEETTTSCHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCC------CCeEEecCCCcCHHHHHHHHHHhcCC---C--CCCeEEEecCCCCHHHHHH
Confidence 47888888888888777744322 24699999999999999999887433 1 34566555543211
Q ss_pred ----CCCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695 98 ----PNEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS 168 (202)
Q Consensus 98 ----~~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~ 168 (202)
...+ +.+.. ....+.+.....++++||||+.++++.|..|+++|+++.+... ....++.+|.+||.
T Consensus 207 elfg~~~g~~tga~-----~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 207 ELFGYEKGAFTGAV-----SSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHCBCTTSSTTCC-----SCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred HhcCCCCCCCCCcc-----cccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 0000 00000 0000122334458999999999999999999999999875421 23346789999998
Q ss_pred ChHHH
Q psy1695 169 GGTEI 173 (202)
Q Consensus 169 ~~~~i 173 (202)
..+.+
T Consensus 282 ~l~~~ 286 (387)
T 1ny5_A 282 NIKEL 286 (387)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76543
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.21 E-value=3.1e-11 Score=103.42 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=68.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~ 100 (202)
.++|++..++.+...+.+. .+.+++|+||||||||++|+++|+.+.... +.. ....++.++++ .
T Consensus 181 ~iiGr~~~i~~l~~~l~r~--------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------~ 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------T 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CccCcHHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------c
Confidence 5999999999988777652 222679999999999999999999975510 000 01223333322 1
Q ss_pred chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
.+.+.+... ...+.+.+......|+||| ...++++.|++.|++ .+..+|.+||...
T Consensus 247 ~~~g~~e~~-~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~---------g~v~vI~at~~~e 302 (468)
T 3pxg_A 247 KYRGEFEDR-LKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR---------GELQCIGATTLDE 302 (468)
T ss_dssp ------CTT-HHHHHHHHHTCCCCEEEEC----C--------CCCTTS---------SSCEEEEECCTTT
T ss_pred cccchHHHH-HHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC---------CCEEEEecCCHHH
Confidence 111211111 2233344455556799999 556788999999987 4577888888764
No 74
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.20 E-value=6.4e-12 Score=97.32 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=58.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV 131 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEi 131 (202)
.+++|+||+|||||++|+++++.+.. .+. .+..+....+..... +. . ..+ ....+++|||+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~---~~~--~~~~~~~~~~~~~~~-------~~-~----~~~--~~~~vliiDe~ 113 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANE---LER--RSFYIPLGIHASIST-------AL-L----EGL--EQFDLICIDDV 113 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTC--CEEEEEGGGGGGSCG-------GG-G----TTG--GGSSEEEEETG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCC--eEEEEEHHHHHHHHH-------HH-H----Hhc--cCCCEEEEecc
Confidence 37899999999999999999999765 211 112222221111000 00 0 011 12479999999
Q ss_pred CCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 132 DKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 132 d~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
+.++... ++.|+.+++... +.....+|++||...+
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~-----~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVA-----EQKRGSLIVSASASPM 150 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH-----HHCSCEEEEEESSCTT
T ss_pred ccccCCHHHHHHHHHHHHHHH-----HcCCCeEEEEcCCCHH
Confidence 9998765 888888876532 0022247788876553
No 75
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.20 E-value=1.2e-11 Score=100.79 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=59.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE 130 (202)
+.+++|+||||||||++|+++++.+.. .+ ..++.+....+. ..............+..... ..++++|||
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~~--~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---RG--YRVIYSSADDFA---QAMVEHLKKGTINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH---TT--CCEEEEEHHHHH---HHHHHHHHHTCHHHHHHHHH--TCSEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH---CC--CEEEEEEHHHHH---HHHHHHHHcCcHHHHHHHhc--CCCEEEEcC
Confidence 346899999999999999999999754 21 122222221110 00000000000111122222 257999999
Q ss_pred CCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695 131 VDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT 171 (202)
Q Consensus 131 id~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~ 171 (202)
++.++. ..++.++.+++... + .+..+|++|+....
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~-----~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLY-----L-LEKQIILASDRHPQ 143 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH-----H-TTCEEEEEESSCGG
T ss_pred cccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEecCChH
Confidence 999986 67777877776421 0 34467777776554
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.18 E-value=1e-11 Score=109.49 Aligned_cols=46 Identities=30% Similarity=0.376 Sum_probs=38.1
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.++||+.+++.+..++... . +++|+||+|||||++|++++..+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~------~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----R------HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----C------CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ceEECchhhHhhccccccCC----C------EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 46999999998877666532 1 6899999999999999999998754
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.18 E-value=7.5e-11 Score=107.14 Aligned_cols=131 Identities=16% Similarity=0.176 Sum_probs=82.8
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
++++|++.+++.+.+.+...+.++. .-..|.+++|+||||||||++|++++..+.. .++.++...+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--------~~i~v~~~~l~ 275 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--------FFFLINGPEIM 275 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--------EEEEEEHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--------cEEEEEchHhh
Confidence 4699999999999999887544322 1234557999999999999999999998532 34444443333
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL 165 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt 165 (202)
....+. .... ...+.+........++|+||++.+.+ .+++.|+.+++... ...+.++|++
T Consensus 276 ~~~~g~---~~~~-l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----~~~~v~vI~a 346 (806)
T 1ypw_A 276 SKLAGE---SESN-LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAA 346 (806)
T ss_dssp SSSTTH---HHHH-HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----TTSCCEEEEE
T ss_pred hhhhhh---HHHH-HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----ccccEEEecc
Confidence 222222 1111 22222323333457999999976643 35667777777432 1256778888
Q ss_pred eCcC
Q psy1695 166 SNSG 169 (202)
Q Consensus 166 sn~~ 169 (202)
||..
T Consensus 347 tn~~ 350 (806)
T 1ypw_A 347 TNRP 350 (806)
T ss_dssp CSCT
T ss_pred cCCc
Confidence 8864
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.17 E-value=4.5e-11 Score=109.28 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=65.7
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCCC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPNE 100 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~ 100 (202)
.++|++..++.+.+.+.+. .+.+++|+||||||||++|+.+|+.+.... +... ...++.++++.+... .
T Consensus 171 ~viGr~~~i~~l~~~l~~~--------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-~ 241 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-A 241 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS--------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred ccCCcHHHHHHHHHHHhcC--------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-C
Confidence 5899999888888776542 222579999999999999999999975410 0000 122333333322110 1
Q ss_pred chhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695 101 NHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169 (202)
Q Consensus 101 ~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~ 169 (202)
.+.+.+...+.. +...+... ...|+||||++.+. .++.+.|.++++.+ +..+|.++|..
T Consensus 242 ~~~g~~~~~l~~-~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---------~i~~I~at~~~ 309 (854)
T 1qvr_A 242 KYRGEFEERLKA-VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---------ELRLIGATTLD 309 (854)
T ss_dssp ----CHHHHHHH-HHHHHHTTCSSEEEEECCC-------------------HHHHHTT---------CCCEEEEECHH
T ss_pred ccchHHHHHHHH-HHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC---------CeEEEEecCch
Confidence 111212222222 22333333 45799999999987 45677888888774 44566666543
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.17 E-value=8e-11 Score=97.95 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=87.9
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc-
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN- 101 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (202)
.++|+..+...+...+........ .++++|++||||+.+|+++++.... . ..++.++++.+......
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~------~vli~GesGtGKe~lAr~ih~~s~r---~---~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKA------PVLITGESGTGKEIVARLIHRYSGR---K---GAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCS------CEEEECCTTSSHHHHHHHHHHHHCC---C---SCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhhhhccch------hheEEeCCCchHHHHHHHHHHhccc---c---CCcEEEEcccCChHHHHH
Confidence 468888888888777776554322 5889999999999999999987433 2 23666666544211100
Q ss_pred -hhH----HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHH
Q psy1695 102 -HVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTE 172 (202)
Q Consensus 102 -~~~----~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~ 172 (202)
.++ .+... ...-.+.+..+..++++|||++.+++..|..|+++|+++.+... ....++.+|.+||.....
T Consensus 198 ~lfg~~~g~~tga-~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~ 276 (368)
T 3dzd_A 198 ELFGHEKGAFTGA-LTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE 276 (368)
T ss_dssp HHHEECSCSSSSC-CCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH
T ss_pred HhcCccccccCCc-ccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 000 00000 00000112334457899999999999999999999999875421 123467799999987654
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.17 E-value=7.2e-11 Score=106.58 Aligned_cols=125 Identities=11% Similarity=0.131 Sum_probs=75.5
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~~~~ 96 (202)
+.++|++..++.+.+.+.+. .+.+++|+||||||||++|+++++.+.+ ... ...++..++..+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~---~~v~~~~~~~~~~~~~~~~l~ 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHH---TCSCGGGTTCEEEECCCC---
T ss_pred CCccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHh---CCCChhhcCCEEEEEcHHHHh
Confidence 35899999998887766542 2336899999999999999999999754 211 1112222222221
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN 167 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn 167 (202)
.. ..+.+.+...+ ..+.+.+......|+||||++.+ ..++.+.|.++++++ +..+|.+||
T Consensus 255 ~~-~~~~g~~e~~l-~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~---------~~~~I~at~ 323 (758)
T 1r6b_X 255 AG-TKYRGDFEKRF-KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTT 323 (758)
T ss_dssp CC-CCCSSCHHHHH-HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------CCEEEEEEC
T ss_pred cc-ccccchHHHHH-HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---------CeEEEEEeC
Confidence 11 11222122222 23334444555689999999988 335677777877764 455666665
Q ss_pred c
Q psy1695 168 S 168 (202)
Q Consensus 168 ~ 168 (202)
.
T Consensus 324 ~ 324 (758)
T 1r6b_X 324 Y 324 (758)
T ss_dssp H
T ss_pred c
Confidence 3
No 81
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.12 E-value=1.3e-10 Score=94.46 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=57.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF 128 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii 128 (202)
.+++|+||||||||++|.++++.+. . .+....++... ...+...... +.+.. ....+. ..++|||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~---~g~~v~~~~~~~l~~~l~~~~~~--~~~~~-----~~~~~~--~~~lLii 220 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK---KGVSTTLLHFPSFAIDVKNAISN--GSVKE-----EIDAVK--NVPVLIL 220 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH---SCCCEEEEEHHHHHHHHHCCCC------CC-----TTHHHH--TSSEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEEHHHHHHHHHHHhcc--chHHH-----HHHHhc--CCCEEEE
Confidence 4789999999999999999999987 5 33211111110 1111000000 00000 011122 2369999
Q ss_pred ecCCCC--ChhHHHHH-HHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 129 DEVDKF--PKGLLDVI-IPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 129 DEid~~--~~~~~~~L-~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
||++.. ++..++.| ..+++... ..+..+|+|||...+.+.+.
T Consensus 221 Ddig~~~~~~~~~~~ll~~ll~~r~------~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 221 DDIGAEQATSWVRDEVLQVILQYRM------LEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp ETCCC------CTTTTHHHHHHHHH------HHTCCEEEEESSCHHHHHTT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH------HCCCcEEEECCCCHHHHHHH
Confidence 999554 33344433 33555421 13567899999998887654
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.11 E-value=5.7e-12 Score=114.44 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=78.4
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCC-----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~-----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 96 (202)
+++.|++.+++.+.+.+......+.. ...+.+++|+||||||||++|+++|..+.. .++.+..+.+.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--------~~i~v~~~~l~ 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELL 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--------CCCCCCCSSST
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--------CEEEEechHhh
Confidence 35788888888887766532221110 123346899999999999999999999633 34444444433
Q ss_pred CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------------hhHHHHHHHhcccCcccccccCCceEE
Q psy1695 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------------KGLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------------~~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
....+... . ....+.+........|+||||+|.+. ..+++.|+..|+... ...+.+|
T Consensus 549 ~~~~g~~~---~-~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----~~~~v~v 619 (806)
T 1ypw_A 549 TMWFGESE---A-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFI 619 (806)
T ss_dssp TCCTTTSS---H-HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------CCBC
T ss_pred hhhcCccH---H-HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----ccCCeEE
Confidence 22211111 0 12223333333344699999998752 235677787777532 3367888
Q ss_pred EEeeCcChH
Q psy1695 163 LFLSNSGGT 171 (202)
Q Consensus 163 Iltsn~~~~ 171 (202)
|+|||....
T Consensus 620 I~tTN~~~~ 628 (806)
T 1ypw_A 620 IGATNRPDI 628 (806)
T ss_dssp CCCCBSCGG
T ss_pred EEecCCccc
Confidence 999987643
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.11 E-value=1.3e-10 Score=104.97 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=68.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhcccccC
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF 97 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~~~~~ 97 (202)
.++|++..++.+...+.+. .+.+++|+||||||||++|+++|+.+.+ ... ...++.+++
T Consensus 181 ~iiG~~~~i~~l~~~l~~~--------~~~~vLL~G~pGtGKT~la~~la~~l~~---~~~p~~l~~~~~~~~~~----- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDM----- 244 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred CccCchHHHHHHHHHHhCC--------CCCCeEEECCCCCCHHHHHHHHHHHHhc---CCCChhhcCCeEEEecc-----
Confidence 5999999999988877642 2236899999999999999999999755 211 112222222
Q ss_pred CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695 98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG 170 (202)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~ 170 (202)
...+.+.+...+ ..+.+.+......|+||| ...++++.|++.|++ .+..+|.+||...
T Consensus 245 -g~~~~G~~e~~l-~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~---------~~v~~I~at~~~~ 302 (758)
T 3pxi_A 245 -GTKYRGEFEDRL-KKVMDEIRQAGNIILFID----AAIDASNILKPSLAR---------GELQCIGATTLDE 302 (758)
T ss_dssp ---------CTTH-HHHHHHHHTCCCCEEEEC----C--------CCCTTS---------SSCEEEEECCTTT
T ss_pred -cccccchHHHHH-HHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhc---------CCEEEEeCCChHH
Confidence 011112122222 233334444556899999 556788899999987 4677888888765
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.09 E-value=5.2e-10 Score=87.96 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=38.9
Q ss_pred hhCCChHHHHHHHHHHHHHhH-----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 22 QHVHGQELAISHICGALKNHF-----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~-----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
++++|++.++..+.+....+. .... ...|.+++|+||||||||+++++++..+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999888877655421 1111 1234469999999999999999999985
No 85
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=1.7e-10 Score=95.22 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=77.6
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---------
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN--------- 92 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--------- 92 (202)
+.++|++..++.+...+....... .+..++|+||+|||||++++.+++.+......+ ..++.+++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~----~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE----KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGK--FKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC----CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSS--CEEEEEEHHHHCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC--ceEEEEECCCCCCHHHH
Confidence 579999999999888777654332 344689999999999999999999864310001 01111111
Q ss_pred -----ccccCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCCCCC----hhHHHHHHHhcccCcccccccCCceEE
Q psy1695 93 -----SRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTIF 162 (202)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid~~~----~~~~~~L~~~le~~~~~~~~~~~~~~~ 162 (202)
..+....+. .+.....+...+...+.... ..||+|||++.+. ...+..|+..++.. ...+..+
T Consensus 94 ~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------~~~~~~~ 166 (386)
T 2qby_A 94 LADLLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------NKSKISF 166 (386)
T ss_dssp HHHHTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------CC--EEE
T ss_pred HHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------CCCeEEE
Confidence 111000000 00001122333444444433 5799999998875 45667777766532 1157788
Q ss_pred EEeeCcC
Q psy1695 163 LFLSNSG 169 (202)
Q Consensus 163 Iltsn~~ 169 (202)
|++||..
T Consensus 167 I~~~~~~ 173 (386)
T 2qby_A 167 IGITNDV 173 (386)
T ss_dssp EEEESCG
T ss_pred EEEECCC
Confidence 8888754
No 86
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.04 E-value=1.2e-09 Score=89.60 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=66.8
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH 102 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
.++||+.+++.+..++........ .+.+++|+||||+|||+++++++..+.. . +..... +....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~---~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~-----~~~~sg-----~~~~~ 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGE---VLDHVLLAGPPGLGKTTLAHIIASELQT---N-----IHVTSG-----PVLVK 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTC---CCCCEEEESSTTSSHHHHHHHHHHHHTC---C-----EEEEET-----TTCCS
T ss_pred HccCcHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCcHHHHHHHHHHHhCC---C-----EEEEec-----hHhcC
Confidence 588999999988887776432211 3346899999999999999999999743 1 000000 00000
Q ss_pred hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
.. .+.. +... .....|+++||++.+.+.+++.|+..++..
T Consensus 90 ~~----~l~~-~~~~--~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 90 QG----DMAA-ILTS--LERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp HH----HHHH-HHHH--CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred HH----HHHH-HHHH--ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 11 1111 1111 124579999999999998888888877654
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.03 E-value=1.4e-09 Score=86.71 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=39.3
Q ss_pred hhCCChHHHHHHHHHHHHHhH-----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 22 QHVHGQELAISHICGALKNHF-----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~-----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
++++|++.+++.+.+....+. .... ...|.+++|+||+|||||+++++++..+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 469999999888877665431 1111 1234469999999999999999999985
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=1.7e-10 Score=84.05 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=58.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++|+||+|+|||+++++++..+.. .+.. .+.+....+... . .+. ..++++|||++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~--~~~~~~~~~~~~---------~--------~~~--~~~lLilDE~~ 93 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE---AGKN--AAYIDAASMPLT---------D--------AAF--EAEYLAVDQVE 93 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT---TTCC--EEEEETTTSCCC---------G--------GGG--GCSEEEEESTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh---cCCc--EEEEcHHHhhHH---------H--------HHh--CCCEEEEeCcc
Confidence 5889999999999999999998754 3211 111111111000 0 011 24799999999
Q ss_pred CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695 133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 173 (202)
Q Consensus 133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i 173 (202)
.+....++.|+++++... +...+.+|+|||..++.+
T Consensus 94 ~~~~~~~~~l~~li~~~~-----~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 94 KLGNEEQALLFSIFNRFR-----NSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp CCCSHHHHHHHHHHHHHH-----HHTCCEEEEEESSCTTTS
T ss_pred ccChHHHHHHHHHHHHHH-----HcCCcEEEEECCCCHHHc
Confidence 998877888888877532 001234788999876544
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.96 E-value=5.9e-10 Score=84.95 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 35 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 35 ~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
...++.++...+ +..+++|+||||||||++|.++++.+..
T Consensus 45 ~~~l~~~~~~iP---kkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGTP---KKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTCT---TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC---cccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344455444321 2236999999999999999999999744
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.87 E-value=2.2e-09 Score=91.17 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=85.3
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHH-HHHhhccc-cCcCccchhhh
Q psy1695 13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI-VSSIFKRY-KDKGTSRFVHK 90 (202)
Q Consensus 13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~l-a~~l~~~~-~~~~~~~~~~~ 90 (202)
++.+.+.+.. ++||+.++..+.-++...... .+...++|+.|+||| ||.+|+++ ++.+.+.. ..+..+....+
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gL 279 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVGK---NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDL 279 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCc
Confidence 5677888889 999999877776555432100 001226999999999 99999999 77642200 00000000001
Q ss_pred hcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-c-cCCceEEEEeeCc
Q psy1695 91 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I-SFQNTIFLFLSNS 168 (202)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-~-~~~~~~~Iltsn~ 168 (202)
..+ ...+ .+ .. .+ . +.+..+..+++++||++++++..+..|++.|+++.++.. . --.+..+|.++|.
T Consensus 280 t~s-~r~~-tG-~~-~~---~----G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 280 TAV-LKED-RG-WA-LR---A----GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SEE-EEES-SS-EE-EE---E----CHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred eEE-EEcC-CC-cc-cC---C----CeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 101 1011 11 00 00 1 112233458999999999999999999999999875422 1 1235678888887
Q ss_pred Ch
Q psy1695 169 GG 170 (202)
Q Consensus 169 ~~ 170 (202)
..
T Consensus 349 ~~ 350 (506)
T 3f8t_A 349 GE 350 (506)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.78 E-value=1.5e-08 Score=84.51 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=42.3
Q ss_pred hhCCChHHHHHHHHHHH-HHhHhccCCCCCceEEEE--ecCCCCcHHHHHHHHHHHhhc
Q psy1695 22 QHVHGQELAISHICGAL-KNHFQNRYHNTKALAISL--HGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l-~~~~~~~~~~~~pl~~ll--~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++|++..++.+...+ .....+.. ..+..+++ +||+|+|||++++.+++.+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 57999999999999888 76554310 13446788 999999999999999988643
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.76 E-value=3.6e-08 Score=78.12 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=61.1
Q ss_pred HHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH
Q psy1695 33 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN 112 (202)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (202)
.+..++..++.... .+..+++|+||||||||++|.++|+.+.- .| . + +.+. ...
T Consensus 88 ~~~~~l~~~l~~~~--~~~n~~~l~GppgtGKt~~a~ala~~~~l---~G---~-v--n~~~-----~~f---------- 141 (267)
T 1u0j_A 88 YAASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTVPF---YG---C-V--NWTN-----ENF---------- 141 (267)
T ss_dssp HHHHHHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHHSSC---EE---E-C--CTTC-----SSC----------
T ss_pred HHHHHHHHHHhCCC--CCCcEEEEECCCCCCHHHHHHHHHhhhcc---cc---e-e--eccc-----ccc----------
Confidence 34455666665431 12347999999999999999999997321 11 0 0 0110 000
Q ss_pred HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc-c-----cccCCceEEEEeeCc
Q psy1695 113 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-N-----QISFQNTIFLFLSNS 168 (202)
Q Consensus 113 ~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~-~-----~~~~~~~~~Iltsn~ 168 (202)
.+.......|+++|-..+..++++.+..+++-..+. + ......+.+|+|||.
T Consensus 142 ----~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 142 ----PFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp ----TTGGGSSCSEEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred ----ccccccccEEEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 011122233445555556667777888888744322 1 124578889999998
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.52 E-value=3.3e-07 Score=75.03 Aligned_cols=98 Identities=7% Similarity=-0.037 Sum_probs=66.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE 130 (202)
+.+++|+||+|+||++.+..+++.+.+ .+.. ++..+ .+.. ...+. .+.......-..+++.|++|||
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~---~~~~-~~~~~---~~~~--~~~~~----~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA---QGFE-EHHTF---SIDP--NTDWN----AIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH---HTCC-EEEEE---ECCT--TCCHH----HHHHHHHHHHHCCSCEEEEEEC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh---CCCC-eeEEE---EecC--CCCHH----HHHHHhcCcCCccCCeEEEEEC
Confidence 337999999999999999999998765 2211 11001 1111 11111 1222222222235678999999
Q ss_pred CCC-CChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695 131 VDK-FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168 (202)
Q Consensus 131 id~-~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~ 168 (202)
++. ++.+.++.|++.+++++ .+++||++++.
T Consensus 85 ~~~kl~~~~~~aLl~~le~p~-------~~~~~il~~~~ 116 (343)
T 1jr3_D 85 PENGPNAAINEQLLTLTGLLH-------DDLLLIVRGNK 116 (343)
T ss_dssp CSSCCCTTHHHHHHHHHTTCB-------TTEEEEEEESC
T ss_pred CCCCCChHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 999 99999999999999977 78888888864
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.44 E-value=1e-06 Score=71.54 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=36.3
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..++|++..++.+.+++... . .++++||+|+|||++++.+++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~------~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----P------LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----S------EEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----C------eEEEECCCcCCHHHHHHHHHHH
Confidence 46899999998888777641 2 7899999999999999999886
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.44 E-value=1.1e-06 Score=71.44 Aligned_cols=72 Identities=7% Similarity=0.080 Sum_probs=39.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 132 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid 132 (202)
.++++||||+|||++|..++.. .. . ...|+............... +.....+.+.+...+ ++|||+++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G---~--~VlyIs~~~eE~v~~~~~~l----e~~l~~i~~~l~~~~--LLVIDsI~ 192 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LG---G--KDKYATVRFGEPLSGYNTDF----NVFVDDIARAMLQHR--VIVIDSLK 192 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HH---T--TSCCEEEEBSCSSTTCBCCH----HHHHHHHHHHHHHCS--EEEEECCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CC---C--CEEEEEecchhhhhhhhcCH----HHHHHHHHHHHhhCC--EEEEeccc
Confidence 4789999999999999999886 21 1 11222220011000001111 112333444555544 99999998
Q ss_pred CCCh
Q psy1695 133 KFPK 136 (202)
Q Consensus 133 ~~~~ 136 (202)
.+..
T Consensus 193 aL~~ 196 (331)
T 2vhj_A 193 NVIG 196 (331)
T ss_dssp TTC-
T ss_pred cccc
Confidence 8754
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.42 E-value=2.6e-07 Score=69.93 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=65.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-----------cccc---------cCCCCchh-HH---HHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----------NSRI---------HFPNENHV-SL---YRL 108 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-----------~~~~---------~~~~~~~~-~~---~~~ 108 (202)
.+++++++|.|||++|-.+|-.... .|...-++.+. ...+ .+...... .. ...
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3788889999999999999988766 44322222110 0111 01111100 00 001
Q ss_pred HhHHHHHHhhhhCCceEEEEecC------CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695 109 QLTNWIISNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT 176 (202)
Q Consensus 109 ~l~~~~~~~l~~~~~~viiiDEi------d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~ 176 (202)
.......+.+....+++||+||+ +.++ .+.+++++.+.+ .+..+|+|+|..++.+.+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---~~ev~~~l~~Rp-------~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP---LEEVISALNARP-------GHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSC-------TTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC---HHHHHHHHHhCc-------CCCEEEEECCCCcHHHHHh
Confidence 11223444555567899999999 3444 345667777655 7889999999998876553
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=1.1e-06 Score=71.53 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.2
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..++|.+..++.+.. +.. . .++++||+|+|||++++.+++.+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~------~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----P------ITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----S------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----C------cEEEECCCCCCHHHHHHHHHHhc
Confidence 468999888777765 432 2 78999999999999999999875
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.39 E-value=8.1e-07 Score=88.89 Aligned_cols=102 Identities=12% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-------------
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT------------- 119 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~------------- 119 (202)
+++|+||||||||.+|+.+...... ..+..++.+ ...... .+.+.+...+.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~-------~~~~~infs-----a~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSL-------YDVVGINFS-----KDTTTE----HILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSS-------CEEEEEECC-----TTCCHH----HHHHHHHHHBCCEEETTTEEEEEB
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCC-------CceEEEEee-----cCCCHH----HHHHHHHHHhhhccccCCccccCC
Confidence 7899999999999999665544211 112222221 111111 11222222211
Q ss_pred -hCCceEEEEecCCCCChh------HHHHHHHhcccCccccc-----ccCCceEEEEeeCcCh
Q psy1695 120 -ACDRAIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG 170 (202)
Q Consensus 120 -~~~~~viiiDEid~~~~~------~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~~ 170 (202)
.....|+||||++....+ ..+.|.+++|.+...+. ....+..+|.++|..+
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence 111258999998765443 78899999988654432 2446788999998864
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.29 E-value=1.8e-06 Score=66.80 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=50.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh---------hhcccccCCCCc-hhHHHHHHhHHHHHHhhhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH---------KFNSRIHFPNEN-HVSLYRLQLTNWIISNVTA 120 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~ 120 (202)
....+++||+|+|||+++..++..+.. .+...-++. ...+.+....+. .+. ....+...+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~-~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE-SAPEILNYIMSNSFN 87 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES-STHHHHHHHHSTTSC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccC-CHHHHHHHHHHHhhC
Confidence 345889999999999999888887654 221111110 001111111111 011 001122233333333
Q ss_pred CCceEEEEecCCCCChhHHHHHHHhcc
Q psy1695 121 CDRAIFIFDEVDKFPKGLLDVIIPFID 147 (202)
Q Consensus 121 ~~~~viiiDEid~~~~~~~~~L~~~le 147 (202)
.+.++|+|||++.++.+..+.+..+.+
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHh
Confidence 456899999999998887776655444
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.26 E-value=3.2e-06 Score=72.01 Aligned_cols=43 Identities=30% Similarity=0.586 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..|++.+...+.. + .+ .+++.|++|||||+++..++..+..
T Consensus 29 ~Q~~av~~~~~~i~~----~----~~-~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE----K----KH-HVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp HHHHHHHHHHHHHHS----S----SC-EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----C----CC-EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 577777777655543 1 22 6899999999999999999999866
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.15 E-value=2.3e-06 Score=64.12 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 122 DRAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 122 ~~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
+.++|+|||++.++++..+.|..+.+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence 468999999999988888888877765
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.11 E-value=1.4e-05 Score=59.54 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999998863
No 103
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.02 E-value=0.00019 Score=60.69 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 29 LAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 29 ~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.+.+.+...+.... ....|..++++||+|+||||++..+|..+..
T Consensus 70 ~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 70 WFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344555555554443211 0124667999999999999999999998765
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.99 E-value=6.1e-06 Score=62.65 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+...+++|+||+|||+.|..++...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35578999999999999998875553
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.98 E-value=1.3e-05 Score=78.51 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++-.++|+||||||||++|.+++.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~ 1453 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR 1453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3446999999999999999999888654
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.94 E-value=2.8e-05 Score=59.30 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||++++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999976543
No 107
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.93 E-value=2.9e-05 Score=67.96 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh------hcccccCCCCchhHHHHHHhHHHHHHh----h----
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------FNSRIHFPNENHVSLYRLQLTNWIISN----V---- 118 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~----l---- 118 (202)
.+++.||||||||+++..++..+.. .+...-+... .+..........+ ..+.+. +
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Ti--------h~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTGRTASTV--------HRLLGYGPQGFRHNH 274 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTSCEEEH--------HHHTTEETTEESCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhcccHHHH--------HHHHcCCcchhhhhh
Confidence 6889999999999999999988654 2210000000 0000000000000 000000 0
Q ss_pred -hhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695 119 -TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 149 (202)
Q Consensus 119 -~~~~~~viiiDEid~~~~~~~~~L~~~le~~ 149 (202)
...+.++||+||+..++...+..|++.+..+
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 1113589999999999999999888877654
No 108
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.92 E-value=0.00042 Score=58.62 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++++|++|+||||++..+|..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998766
No 109
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.90 E-value=2.1e-05 Score=62.99 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.7
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
...|..++|.||||+||||+++.+++.+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467789999999999999999999875
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.85 E-value=1.2e-05 Score=81.34 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=34.8
Q ss_pred eEEEEecCCCCChh------HHHHHHHhcccCccccc-----ccCCceEEEEeeCcC
Q psy1695 124 AIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG 169 (202)
Q Consensus 124 ~viiiDEid~~~~~------~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~ 169 (202)
-|+++||++...++ ....|.+++|.+...+. ....+..||.+.|..
T Consensus 1376 ~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp EEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred EEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence 58889999877654 88999999998765432 345677888888864
No 111
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=0.00092 Score=54.44 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|-.+.|.||+|+||||+++.|+..+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4667999999999999999999998765
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.80 E-value=0.00015 Score=52.60 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=19.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++|.||||+|||++|+.+ +.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 5789999999999999999 55
No 113
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.78 E-value=0.00015 Score=56.30 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+++||+|+|||.+|..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 37899999999999998888764
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=1.8e-05 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
|..++++|+||+|||++++.|++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999853
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.73 E-value=0.0002 Score=58.95 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+|||+++..++..+..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999988654
No 116
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=0.0001 Score=60.67 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+|||+++..++..+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999877543
No 117
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.72 E-value=4.2e-05 Score=57.63 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=48.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh---------h-cccccCCCCc-hhHHHHHHhHHHHHHhhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------F-NSRIHFPNEN-HVSLYRLQLTNWIISNVT 119 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~-~~~~~~~~~~-~~~~~~~~l~~~~~~~l~ 119 (202)
....+++||.|+|||+.+..++..+.. .+...-++.. . .+.+....+. .+. . ...+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~---~--~~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---N--SREILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTTSCEEECEEES---S--STHHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeC---C--HHHHHHHHh
Confidence 446889999999999998888877644 2211111100 0 0011000000 000 0 011222222
Q ss_pred hCCceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 120 ~~~~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
.++++|+|||++.++++..+.+..+.+.
T Consensus 80 -~~~dvViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 80 -EDTEVIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp -TTCSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred -ccCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 2468999999999988877776665443
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.72 E-value=0.00019 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||+|+||||+.++++..+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCC
Confidence 5889999999999999999998654
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.72 E-value=2.7e-05 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|..++|.|+||+||||+++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56679999999999999999999986
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.72 E-value=0.00012 Score=60.44 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=47.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhccccCc-C----ccchhhhh----cccccCCCCchhHHHHHHhHHHHHHhhhhCCc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G----TSRFVHKF----NSRIHFPNENHVSLYRLQLTNWIISNVTACDR 123 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~----~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 123 (202)
.+++.||+|+||||+.++++..+....... . ..++.... ....... ..... + ...+..++... .
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~-~~~~~-~----~~~La~aL~~~-P 197 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVH-RDTLG-F----SEALRSALRED-P 197 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBT-TTBSC-H----HHHHHHHTTSC-C
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeec-cccCC-H----HHHHHHHhhhC-c
Confidence 589999999999999999999875510000 0 00000000 0000000 00011 1 23444555544 4
Q ss_pred eEEEEecCCCCChhHHHHHHHhccc
Q psy1695 124 AIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 124 ~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
+++++||+- +.+..+.+++..+.
T Consensus 198 dvillDEp~--d~e~~~~~~~~~~~ 220 (356)
T 3jvv_A 198 DIILVGEMR--DLETIRLALTAAET 220 (356)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred CEEecCCCC--CHHHHHHHHHHHhc
Confidence 799999996 46677777776655
No 121
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.70 E-value=0.0012 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..++|.|+||+|||++|+.+++.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355689999999999999999999864
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.70 E-value=0.00012 Score=55.29 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.++++||+|+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.68 E-value=0.00014 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||||+|||+++..++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999888776543
No 124
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.68 E-value=5.7e-05 Score=59.10 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
...|..++|.|+||+|||++|+.|++.+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34677799999999999999999999863
No 125
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.67 E-value=3.3e-05 Score=58.07 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..|..++|.|+||+|||++|+.|++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 466679999999999999999999985
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.66 E-value=0.00017 Score=59.41 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+|||++|..++..+..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887644
No 127
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.66 E-value=7.2e-05 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+++.|++|||||+++..+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 46899999999999999999999766
No 128
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.65 E-value=8.5e-05 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..++|.||||+||||+|+.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 67789999999999999999999875
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.65 E-value=3.3e-05 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
|..++|.|+||+||||+|+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 44689999999999999999998
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.64 E-value=3.5e-05 Score=57.03 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..++|+||+|+|||++|+.+|+.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999863
No 131
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.63 E-value=0.00038 Score=56.18 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.|..+++.||+|+|||++|..+|+.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 455688999999999999999999853
No 132
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.63 E-value=0.00032 Score=58.01 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+|||++|..++..+..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Confidence 5888999999999999999887543
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=4.5e-05 Score=56.57 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..++|.|+||+||||+|+.+++.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999999875
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.60 E-value=4.3e-05 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..++|.|+||+||||+|+.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999985
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.60 E-value=4.3e-05 Score=56.56 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+..++|.|++|+||||+++.|++.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999865
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.60 E-value=2.7e-05 Score=57.41 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+|..++|.|++|+||||+|+.|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556789999999999999999998853
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=4e-05 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.||+|+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 138
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.58 E-value=5e-05 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
++..++|.|++|+||||+++.|++.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568999999999999999999875
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=5.6e-05 Score=56.86 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.||+|+|||++++.|++.+.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999863
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.55 E-value=5.4e-05 Score=56.33 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
++..++|.|++|+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999985
No 141
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.55 E-value=0.00057 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|..++++|+||+||||+|+.+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45578999999999999999998764
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.54 E-value=5.4e-05 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..++|.|++|+||||+|+.|++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999985
No 143
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=5.1e-05 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|+||+|+||||+++.++..+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999853
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.53 E-value=5.6e-05 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..++|+|++|+|||++++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3358899999999999999999885
No 145
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.53 E-value=7.4e-05 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..+.|.||+|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999999875
No 146
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.52 E-value=0.00053 Score=60.43 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.|+||||||+++..+...+.
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 589999999999999988887765
No 147
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.52 E-value=7.1e-05 Score=56.30 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+..++|.|++|+||||+++.|++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 456899999999999999999998644
No 148
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.52 E-value=0.00021 Score=57.25 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 30 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 30 a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++.+.+.+..+.... .++|..+.+.||+|+||||+++.|+..+..
T Consensus 12 ~~~~l~~~i~~~~~~~--~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 12 TIEFLDKYIPEWFETG--NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHHHHTTT--CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc--CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3444545554432211 346777999999999999999999998754
No 149
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.50 E-value=0.00022 Score=57.94 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=25.8
Q ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 48 NTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|..+.+.||+|+||||+++.|+..+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788899999999999999999998864
No 150
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.50 E-value=8.4e-05 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+|..+++.||||+||+|.|+.|++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466678899999999999999999985
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.49 E-value=7.9e-05 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++..++|.|++|+|||++++.|++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356678999999999999999999874
No 152
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.49 E-value=6.1e-05 Score=57.56 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+|..++|.||+|+||||+++.|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455689999999999999999999863
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=8.3e-05 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++..++|+|++|+|||++++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999999998
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.48 E-value=7e-05 Score=54.99 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.||||+|||++|+.||+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999863
No 155
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.47 E-value=8.6e-05 Score=57.26 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..++|.|++|+||||+|+.|++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455789999999999999999999863
No 156
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.46 E-value=8.1e-05 Score=56.18 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|.|++|+||||+++.|++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667999999999999999999998643
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.46 E-value=6.6e-05 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..++|.|++|+|||++++.|++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999885
No 158
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.46 E-value=0.0001 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.|..++|.|++|+|||++|+.+++.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999875
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.46 E-value=6.8e-05 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++|.|+||+||||+++.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 160
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.46 E-value=0.00045 Score=55.86 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+..+++.||+|+|||++|..+|+.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 33678999999999999999999853
No 161
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.46 E-value=0.00017 Score=69.93 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++||||||||.+|.+++.+-.
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhh
Confidence 499999999999999999998743
No 162
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.45 E-value=8.9e-05 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|.|++|+||||+++.|++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667999999999999999999998643
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.43 E-value=8.6e-05 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
|..++|.|++|+|||++|+.|++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33689999999999999999999853
No 164
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.43 E-value=7.6e-05 Score=56.31 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..++|.||+|+|||++++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44568999999999999999999985
No 165
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.43 E-value=0.0024 Score=64.58 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 103 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
++=-++|++.+.+..+- +..+. -++||+|+.|+||+++++..|..... .+..+..+ ..-..
T Consensus 1588 LVlF~dai~Hi~RI~Ri-l~~p~-----G~~LLvGvgGsGkqSltrLaa~i~~~--------~~fqi~~~-----~~Y~~ 1648 (2695)
T 4akg_A 1588 MVIHESMVDHILRIDRA-LKQVQ-----GHMMLIGASRTGKTILTRFVAWLNGL--------KIVQPKIH-----RHSNL 1648 (2695)
T ss_dssp CCCCHHHHHHHHHHHHH-HHSSS-----EEEEEECTTTSCHHHHHHHHHHHTTC--------EEECCCCC-----TTCCH
T ss_pred eeeHHHHHHHHHHHHHH-HcCCC-----CCEEEECCCCCcHHHHHHHHHHHhCC--------eeEEEEee-----CCCCH
Confidence 45557788888654443 33322 16999999999999999987766211 12222211 11113
Q ss_pred HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
..++++++..+..+-......+++|+|.+-..+..+..+..+|..|.+
T Consensus 1649 ~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEV 1696 (2695)
T 4akg_A 1649 SDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADI 1696 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCC
Confidence 346666666665554455668899999999999998888888888764
No 166
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.42 E-value=0.00025 Score=58.28 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+..++.+...+...+... ....++|.||+|+|||+++++++..+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g----~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDN----YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTC----SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccC----CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34455566656555544322 223588999999999999999999864
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.42 E-value=0.00011 Score=55.31 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..+.|.||+|+||||+++.|+..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999999875
No 168
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.40 E-value=0.0009 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+||||+.++++..+.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5889999999999999999988644
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=0.0001 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+-.+.+.||+|+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3446899999999999999999886
No 170
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.39 E-value=8.6e-05 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.++|.|+||+||||+|+.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999986
No 171
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=0.00031 Score=52.89 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+..+.+.|++|+|||++++.++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5667899999999999999999998643
No 172
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.39 E-value=0.0082 Score=51.63 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHhccCC-----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 30 AISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 30 a~~~l~~~l~~~~~~~~~-----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++.+.+.+...+..... ..+|..++|+|++|+||||++..||..+..
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444455555554432110 134557899999999999999999988754
No 173
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=9e-05 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|+|+||+|||++|+.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999853
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.39 E-value=0.00015 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..+.|.||+|+|||++++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999874
No 175
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.39 E-value=0.00011 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..+.|.|++|+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999986
No 176
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.39 E-value=0.0046 Score=52.19 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..++++|++|+|||+++..+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557899999999999999999998754
No 177
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.38 E-value=0.00016 Score=53.52 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..++|.|++|+|||++++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4556899999999999999999999754
No 178
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.0018 Score=49.73 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.2
Q ss_pred EEEEecCCCCcHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIV 72 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la 72 (202)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 68999999999998665443
No 179
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.37 E-value=0.00012 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..+.|.||+|+|||++++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34468899999999999999999885
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.36 E-value=0.00012 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.|++|+|||++|+.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 181
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.36 E-value=0.00013 Score=53.05 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.|++|+|||++++.||+.+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999863
No 182
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.35 E-value=0.00015 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+..+.+.||+|+||||+++.|+..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456889999999999999999998763
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.35 E-value=0.00061 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||+|+||||+.++++..+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 5899999999999999999998654
No 184
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.35 E-value=0.0004 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+++.||+|+|||+++..||+.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 444689999999999999999999864
No 185
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.34 E-value=0.00014 Score=56.45 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..+.|.||+|+||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999775
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00016 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999874
No 187
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.34 E-value=0.00014 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+|..+.+.||+|+|||++++.|++.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56679999999999999999999875
No 188
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.34 E-value=0.00058 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|-.+.|.||+|+||||+++.+|..+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3446899999999999999999998765
No 189
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.34 E-value=0.00012 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999999999875
No 190
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.33 E-value=0.00012 Score=57.31 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||+|+|||++|+.||+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999999853
No 191
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.33 E-value=0.00011 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|+||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999999999874
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.31 E-value=0.00033 Score=56.82 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||||+|||+++..++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999874
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.31 E-value=0.0091 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
|..+++.|++|+|||+++..+|..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556888999999999999999988754
No 194
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.31 E-value=0.00024 Score=54.36 Aligned_cols=27 Identities=15% Similarity=-0.156 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
....+++||.|+|||+.+..++.....
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345778999999999998888777544
No 195
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.31 E-value=0.00018 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..+.|.||+|+||||+++.+++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 196
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.30 E-value=0.0002 Score=52.74 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|+|++|+|||++++.++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4556889999999999999999998743
No 197
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.29 E-value=0.00016 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999985
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.29 E-value=0.00015 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999853
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00015 Score=54.32 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999999986
No 200
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00018 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++|..+.++|++|+|||++++.|++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 36777999999999999999999986
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00017 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|.|++|+|||++|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999753
No 202
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.27 E-value=0.00019 Score=55.95 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++|..+.+.|++|+|||++|+.|++.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3666799999999999999999999754
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.25 E-value=0.00058 Score=67.09 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||||||++|..++.....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999987654
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00086 Score=55.28 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|-.+.|.||+|+||||+++.|+..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4556899999999999999999998765
No 205
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.22 E-value=0.0054 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..++++|.||+|||++++.+++.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5667999999999999999999998753
No 206
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.21 E-value=0.00026 Score=52.97 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
-.+.|.||+|+||||+++.++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999999874
No 207
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.21 E-value=0.0037 Score=51.22 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.++|+||+|||+++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999999988654
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.20 E-value=0.00022 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999873
No 209
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.20 E-value=0.0077 Score=50.83 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..++++|++|+|||+++..||..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999998765
No 210
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.20 E-value=0.00022 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999863
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.19 E-value=0.00056 Score=54.88 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++-.++|+||+|+||||++..+|..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3447899999999999999999998753
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.19 E-value=0.00031 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..++|.|++|+|||++++.+++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455688999999999999999999876
No 213
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.18 E-value=0.0012 Score=49.74 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHH-HHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKN-YVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT-~la~~la~~l~~ 77 (202)
..+++||.|+||| +|.+++.++...
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4789999999999 899999888654
No 214
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.17 E-value=0.0013 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+++.||+|+|||++|..||+.+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 578999999999999999999864
No 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.17 E-value=0.00024 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 216
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.0014 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.|+||||+|||+++..++-.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 5889999999999999977644
No 217
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.16 E-value=0.0013 Score=53.31 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..++++||+|+|||+++..+|..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557899999999999999999998765
No 218
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.16 E-value=0.00023 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999975
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.00024 Score=52.66 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.|.||+|+||||+++.++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4789999999999999999875
No 220
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00042 Score=54.29 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
|...+++.+.-.+...+.+. .+.|.|++|+|||++++.+++.+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~-------~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR-------SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC-------CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCC-------EEEEECCCCCCHHHHHHHHHHhcC
Confidence 33445555544444433221 589999999999999999999753
No 221
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.14 E-value=0.00032 Score=52.90 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..+.+.||+|+||||+++.|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999864
No 222
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.14 E-value=0.0054 Score=46.04 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..+++.|++|+|||++...+....+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344699999999999999999987643
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.13 E-value=0.0016 Score=63.28 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||||+|||++|..++..+..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHH
Confidence 5899999999999999999988654
No 224
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.12 E-value=0.00034 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+..++++||+|+|||++|..||+.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999999863
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00098 Score=53.87 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+..+.+.||+|+||||+++.|+..+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 5557889999999999999999998754
No 226
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.10 E-value=0.00026 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999998754
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.07 E-value=0.00043 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
+|..+.|.|++|+|||++++.|++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999999999988
No 228
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.07 E-value=0.00036 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
|..++|.|+||+||||+|+.+++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999986
No 229
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.06 E-value=0.00059 Score=60.45 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.||||||||+++-.+...+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999876665555443
No 230
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00033 Score=52.63 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+.|.||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.00051 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+..+.|.||+|+|||++++.|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3358899999999999999999874
No 232
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.03 E-value=0.0013 Score=52.94 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+..+.+.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556789999999999999999999865
No 233
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.03 E-value=0.00058 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+.|.||+|+||||+++.+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 455689999999999999999999864
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.02 E-value=0.0026 Score=54.50 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 29 LAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 29 ~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
...+.+.+.+...+.... ....+-.++|.||+|+||||+++.|+..+..
T Consensus 266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 344555555555443211 0134557899999999999999999998755
No 235
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00034 Score=52.68 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..+.++|++|+|||++++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 44568899999999999999999874
No 236
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.00048 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHH
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+|..+.++|++|+||||+|+.|++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999995
No 237
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.00 E-value=0.001 Score=55.17 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..++++||+|+|||+++++++..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34468999999999999999999874
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.00 E-value=0.00041 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+||||+++.+...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998874
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.00 E-value=0.002 Score=51.90 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|-.++++||+|+||||++..+|..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4556899999999999999999998765
No 240
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00053 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+.+.||+|+||||+++.|++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 368899999999999999999764
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00046 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
++|.||+|+|||++++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5899999999999999987763
No 242
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.96 E-value=0.00061 Score=59.36 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=35.0
Q ss_pred hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695 22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
..++|.+..++.+...+...- ..+..+.++||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 358999988888877765321 1233688999999999999998864
No 243
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.95 E-value=0.0016 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++++|+|+|||.++-.++..+..
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHHHHHHh
Confidence 4688899999999999888877654
No 244
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.95 E-value=0.00043 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+.++|++|+||||+++.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999999998
No 245
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.93 E-value=0.00073 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..+.+.||+|+||||+++.|+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999975
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0025 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++||||+|||+++..++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999988777654
No 247
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.90 E-value=0.00067 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.+.|++|+|||++++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999975
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.89 E-value=0.00025 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 249
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.87 E-value=0.0008 Score=56.90 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 123 RAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 123 ~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
.+++|+||+..+++..+..++..+..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 68999999999999988888777654
No 250
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.87 E-value=0.0017 Score=55.92 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=39.6
Q ss_pred cCCCchHHHHHHHHhhC-----CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 8 IQSSNVRVLEEQLKQHV-----HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 8 ~~~~~~~~l~~~L~~~l-----iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.-..+++.|.... +-..++.+.+ ++..... .+++..++|.|.+|+||||+|++||+.|.
T Consensus 353 ~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vL----r~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 353 TLNISGTELRRRLRVGGEIPEWFSYPEVVKIL----RESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHH----HHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHhCCCCCCccccChhhHHHH----HHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34555666766666432 2233343333 3322110 12456799999999999999999999975
No 251
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.85 E-value=0.00064 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
|..+.+.|++|+|||++++.+++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999975
No 252
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.84 E-value=0.0029 Score=48.83 Aligned_cols=26 Identities=15% Similarity=-0.124 Sum_probs=19.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
...+++||.|+|||+.+...+.....
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~ 45 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQI 45 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35788999999999777666655443
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.83 E-value=0.0006 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..++|.||+|+|||++|..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3689999999999999999998743
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.82 E-value=0.0011 Score=48.61 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=16.2
Q ss_pred EEEEecCCCCcHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTD 69 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~ 69 (202)
.+.+.||+|+||||+++
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999999
No 255
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.80 E-value=0.00046 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=20.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+.+.||+|+||||+|+.+++.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455789999999999999999999764
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.80 E-value=0.001 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+..+.|.|++|+|||++++.+++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999875
No 257
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00085 Score=51.81 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
|..+.|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 55689999999999999999999863
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.78 E-value=0.00093 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+||||+++.|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999886
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.77 E-value=0.00093 Score=54.62 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+++.||+|+|||++|..||+.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999999864
No 260
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.77 E-value=0.0008 Score=51.36 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+||||+++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 261
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.76 E-value=0.0011 Score=53.35 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
|-.+.+.||+|+||||+++.++..+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 446889999999999999999998765
No 262
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.76 E-value=0.012 Score=43.75 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.0
Q ss_pred EEEEecCCCCcHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDF 70 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~ 70 (202)
.+++.+|+|+|||..+-.
T Consensus 40 ~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 478999999999987544
No 263
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.75 E-value=0.0011 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.|++|+|||+++..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 6889999999999999999998755
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.75 E-value=0.0012 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.||.|+|||++.+.++..+ +
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-G 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-T
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-C
Confidence 58899999999999999999997 5
No 265
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.75 E-value=0.0011 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=24.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.|..++++|.||+|||++|+.|++.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999874
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.72 E-value=0.0011 Score=50.74 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.||+|+||||+.+.++..+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 588999999999999999998753
No 267
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.72 E-value=0.0025 Score=55.24 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
+|.+..++.+.+.+...- ...+..+.++|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 699999999988885431 11234688999999999999999996
No 268
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.71 E-value=0.0074 Score=47.53 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=19.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHhh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++.+|+|+|||.++.+++....
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHHH
Confidence 46799999999999987777643
No 269
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.68 E-value=0.00093 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.+.||+|+|||++++.++..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999843
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.67 E-value=0.00071 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred EEEEecCCCCcHHHHHHHHH-HHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIV-SSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la-~~l 75 (202)
.+.|.||+|+||||+++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 58899999999999999999 664
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.00088 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.||+|+|||++++.++..+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998643
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.0012 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.||+|+||||+.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 368999999999999999999864
No 273
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.65 E-value=0.0016 Score=49.73 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+|||++++.+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999999864
No 274
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.64 E-value=0.0012 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.++|++|+||||+++.+++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999984
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.63 E-value=0.0018 Score=49.49 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695 122 DRAIFIFDEVDKFPKGLLDVIIPFIDH 148 (202)
Q Consensus 122 ~~~viiiDEid~~~~~~~~~L~~~le~ 148 (202)
+..+|+|||++-++++..+.+..+.+.
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHC
Confidence 568999999999999888888887754
No 276
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.63 E-value=0.013 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+++.+|+|+|||..+...+...
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHH
Confidence 67899999999999876655443
No 277
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.59 E-value=0.0019 Score=49.66 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+|||++++.+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5667899999999999999999998743
No 278
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0013 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.|+||+|+|||++++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999985
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.56 E-value=0.0028 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|+||+|+|||++++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 58899999999999999999986
No 280
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.55 E-value=0.00062 Score=53.34 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
++..+.|.|++|+||||+++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56678999999999999999999886
No 281
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.54 E-value=0.014 Score=59.76 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695 24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV 103 (202)
Q Consensus 24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
++=-++|++.+.+..+ .+..+. + +.||+|..|+||++++|..|.. .. . .+..+..+. .-..
T Consensus 1625 LVlF~daleHv~RI~R-IL~qp~----G-haLLVGvgGSGkqSLtrLAa~i-~~-----~--~vfqi~i~k-----~Y~~ 1685 (3245)
T 3vkg_A 1625 LVLFNEVLDHILRIDR-VFRQPQ----G-HALLIGVSGGGKSVLSRFVAWM-NG-----L--SIYTIKVNN-----NYKS 1685 (3245)
T ss_dssp CCCCHHHHHHHHHHHH-HHTSTT----C-CEEEEESTTSSHHHHHHHHHHH-TT-----C--EEECCC---------CCH
T ss_pred EEeHHHHHHHHHHHHH-HHccCC----C-CeEEecCCCCcHHHHHHHHHHH-hC-----C--eeEEEeeeC-----CCCH
Confidence 3445778888865444 333322 1 5899999999999999877665 22 1 122221110 1112
Q ss_pred HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695 104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV 151 (202)
Q Consensus 104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~ 151 (202)
..++++++..+..+-......+++|+|.+-..+..+..+..+|..|.+
T Consensus 1686 ~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEV 1733 (3245)
T 3vkg_A 1686 SDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEV 1733 (3245)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCc
Confidence 346666666655554445568899999998888888888888887764
No 282
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.53 E-value=0.0014 Score=50.55 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+||||+++.+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556899999999999999999998754
No 283
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.50 E-value=0.0021 Score=56.23 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++|..++|.|++|+|||++|+.|++.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 35667999999999999999999999763
No 284
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.49 E-value=0.014 Score=43.37 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=14.9
Q ss_pred EEEEecCCCCcHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDF 70 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~ 70 (202)
.+++.+|+|+|||..+..
T Consensus 42 ~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CEEEECCSSSTTHHHHHH
T ss_pred CEEEECCCCCchHHHHHH
Confidence 478999999999976543
No 285
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.48 E-value=0.0022 Score=56.55 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+|..++|+|.+|+||||+|+.|++.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5667999999999999999999999743
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.47 E-value=0.002 Score=49.96 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+|||++++.+++.+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556899999999999999999999755
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.0042 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+++.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999988753
No 288
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.45 E-value=0.002 Score=47.62 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++|.|++|+|||++|..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999998875
No 289
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.45 E-value=0.0072 Score=50.80 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=16.3
Q ss_pred EEEEecCCCCcHHHHH-HHHH
Q psy1695 53 AISLHGLPGTGKNYVT-DFIV 72 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la-~~la 72 (202)
.+++.||+|+|||..+ ..+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999986 4444
No 290
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.44 E-value=0.0023 Score=48.92 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+|||+.++.+++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4556899999999999999999999753
No 291
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.42 E-value=0.016 Score=47.22 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=23.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+..+.+.||||+|||++.+.++..+.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3446889999999999999999987654
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.41 E-value=0.0024 Score=47.09 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.|++|+|||++++.+...+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccc
Confidence 5889999999999999999988654
No 293
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.40 E-value=0.022 Score=48.55 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=20.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..+++||+|+|||..+..++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHH
Confidence 479999999999999977776644
No 294
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.39 E-value=0.026 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+|...+++||+|+|||.++...+-.
T Consensus 623 ~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 623 LAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp SCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred CcCcEEEECCCCCCHHHHHHHHHHH
Confidence 5567899999999999988655543
No 295
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.39 E-value=0.0021 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+|+||+|+|||++.++|.-.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999988765
No 296
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.39 E-value=0.0042 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.|.||+|+||||+.++|+....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999999988543
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.38 E-value=0.0047 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++|+||+|+|||+++..++....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh
Confidence 478999999999999999887753
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0044 Score=45.47 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.-+++.|++|+|||++...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999998775
No 299
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.32 E-value=0.017 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+|||++++.++..+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987654
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.30 E-value=0.0025 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++++||+|+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999997654
No 301
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.30 E-value=0.003 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.-+.|.|++|+||||.++.+++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999865
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.29 E-value=0.002 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5789999999999999999887544
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0015 Score=48.04 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.++|++|+||||+++.|+..+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999999765
No 304
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.28 E-value=0.027 Score=50.90 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.7
Q ss_pred EEEEecCCCCcHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIV 72 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la 72 (202)
.+++.||+|+|||++...+.
T Consensus 111 ~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999665553
No 305
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.27 E-value=0.0028 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
-+-|.||||+|||+.|+.|++.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 306
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.27 E-value=0.015 Score=49.80 Aligned_cols=25 Identities=8% Similarity=-0.164 Sum_probs=22.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.|+||+|||+++..+|..+..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred EEEEeecCCCCchHHHHHHHHHHHH
Confidence 5899999999999999999988654
No 307
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.27 E-value=0.0087 Score=45.18 Aligned_cols=27 Identities=19% Similarity=0.440 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+..+++.|++|+|||+++..++...+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 346888899999999999999988654
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.27 E-value=0.0019 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 309
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.27 E-value=0.0024 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987644
No 310
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.27 E-value=0.0024 Score=50.72 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||||+|||++++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988754
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.25 E-value=0.0034 Score=44.73 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..+-+++.|++|+|||++...+...-
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 45568999999999999999987753
No 312
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.22 E-value=0.0022 Score=55.86 Aligned_cols=28 Identities=18% Similarity=0.510 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++..+.|.|++|+||||++++|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3446899999999999999999999864
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.20 E-value=0.0019 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++.. .+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CC
Confidence 5788999999999999999987 54
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.20 E-value=0.0029 Score=52.02 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+++.|+..+.+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998654
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.20 E-value=0.0032 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999988644
No 316
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.18 E-value=0.0053 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.||||||||+++..+...+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999998888777653
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.17 E-value=0.0022 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 318
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.16 E-value=0.023 Score=46.13 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.7
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+++.+|+|+|||..+-..+-
T Consensus 46 ~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 46 NMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999987654443
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.14 E-value=0.01 Score=49.90 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.|..++++|++|+|||+++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556888999999999999999999765
No 320
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.13 E-value=0.0027 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887544
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.11 E-value=0.0045 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++-+++.|++|+|||++...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999888765
No 322
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.11 E-value=0.0044 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 445899999999999999988654
No 323
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.10 E-value=0.004 Score=53.71 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.||+|+||||+.++++..+.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 5899999999999999999887644
No 324
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.10 E-value=0.0026 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999887543
No 325
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.09 E-value=0.0035 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.+.||+|+||||+.+.++..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999986
No 326
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.08 E-value=0.0034 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.-+.+.|++|+|||++.+.++...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3589999999999999999988644
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.05 E-value=0.0038 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.-+.+.|++|+|||++.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998763
No 328
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.05 E-value=0.0043 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.|++|+|||++++.||+.|.-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 6889999999999999999999643
No 329
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.05 E-value=0.0028 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5789999999999999999887543
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.05 E-value=0.0034 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.+.||+|+||||+.+.++..+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.05 E-value=0.003 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999887543
No 332
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.05 E-value=0.0038 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||+|+||||+.++++..+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4889999999999999999998755
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.04 E-value=0.003 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.||+|+||||+.+.|+-.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5789999999999999999987544
No 334
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.02 E-value=0.0029 Score=49.85 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 335
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.02 E-value=0.03 Score=51.65 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++++||.|+|||++.+.++-.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998544
No 336
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.02 E-value=0.0032 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999887543
No 337
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.01 E-value=0.0029 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.01 E-value=0.0033 Score=49.52 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 5789999999999999999887543
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.01 E-value=0.0027 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++..+.|.|++|+||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4556889999999999999999876
No 340
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0057 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999764
No 341
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.00 E-value=0.0057 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.++++||+|+||||+.++++..+.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5889999999999999999987544
No 342
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.00 E-value=0.0054 Score=57.47 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=35.5
Q ss_pred hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++|.+..++.+.+.+...- ..+..+.++|+.|+|||+||..+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhcc------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 48999998888887775321 13336889999999999999888765
No 343
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.99 E-value=0.0043 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999887543
No 344
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.98 E-value=0.0032 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5789999999999999999887543
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.97 E-value=0.0055 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.-+++.|++|+|||++...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999988765
No 346
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.97 E-value=0.007 Score=46.84 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 49 TKALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.++..+++.|.+|+|||+++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3555689999999999999999998864
No 347
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.96 E-value=0.0033 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999887543
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.96 E-value=0.0052 Score=43.42 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.-+++.|++|+|||++...+...-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999997653
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.96 E-value=0.0052 Score=44.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
-+.+.|++|+|||++.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999764
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.95 E-value=0.0049 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++-+++.|++|+|||++...+...-
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999997653
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.95 E-value=0.0039 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.||+|+||||+.+.|+-.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 5789999999999999999987544
No 352
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.95 E-value=0.0037 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.94 E-value=0.0039 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999987543
No 354
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0048 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++.|+||+|||++|..++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999887654
No 355
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.94 E-value=0.0049 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
-+++.|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998765
No 356
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.93 E-value=0.0067 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++-+++.|++|+|||++...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4456999999999999999998754
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.93 E-value=0.0067 Score=42.95 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998765
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.93 E-value=0.0052 Score=43.86 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-+++.|++|+|||++...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3446899999999999999998765
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.0041 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5789999999999999999987544
No 360
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.92 E-value=0.0037 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
-+++.|++|+|||++.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 361
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.91 E-value=0.0035 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999887643
No 362
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.91 E-value=0.0035 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+..+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.91 E-value=0.0041 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 5789999999999999999987543
No 364
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.90 E-value=0.0056 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++-+++.|++|+|||++...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345899999999999999998754
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.90 E-value=0.0068 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4556999999999999999998654
No 366
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.88 E-value=0.0043 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 5789999999999999999987543
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.88 E-value=0.004 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999887543
No 368
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.87 E-value=0.031 Score=51.47 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++++||.|+|||++.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5889999999999999998764
No 369
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.86 E-value=0.0072 Score=43.51 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999998754
No 370
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.86 E-value=0.0073 Score=46.33 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
...+.+.|++|+|||++|+.||+.+.-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999998643
No 371
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.86 E-value=0.0088 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.||||||||+++..++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999998888777654
No 372
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.85 E-value=0.0048 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.||+|+||||+.+.|+..+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 588999999999999999988753
No 373
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0064 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999988754
No 374
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.85 E-value=0.0042 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999887543
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.84 E-value=0.0045 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 5789999999999999999987543
No 376
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.84 E-value=0.044 Score=51.06 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=19.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~ 73 (202)
-.++++||.|+|||++.+.++-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 3588999999999999999943
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.83 E-value=0.0064 Score=44.30 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-+++.|++|+|||++...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999998764
No 378
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.83 E-value=0.0069 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.-+++.|++|+|||++...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 379
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.83 E-value=0.0086 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-+++.|++|+|||++...+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556999999999999999998775
No 380
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.83 E-value=0.0036 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 5789999999999999999987543
No 381
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.82 E-value=0.0062 Score=52.94 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+..++|+|++|+|||++|+.|++.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4557899999999999999999998754
No 382
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.81 E-value=0.007 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999998776
No 383
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.78 E-value=0.0059 Score=43.41 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999988765
No 384
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.77 E-value=0.0044 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+ +
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p 55 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-P 55 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C
Confidence 57899999999999999999876 5
No 385
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.76 E-value=0.0057 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999998764
No 386
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.75 E-value=0.007 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.-+++.|++|+|||++...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556999999999999999888644
No 387
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.75 E-value=0.0068 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.++||+|+|||++++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 388
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.75 E-value=0.026 Score=47.54 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..++.+|+|+|||..+..++..+
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 47899999999999997777764
No 389
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0065 Score=43.27 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+-+++.|++|+|||++.+.+...-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3458999999999999999987653
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.73 E-value=0.0099 Score=42.48 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+++||.|+|||++..++.-.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4789999999999999999887755
No 391
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.73 E-value=0.083 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=16.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++.+|+|+|||..+...+-.
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHH
Confidence 4789999999999876554433
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.71 E-value=0.0069 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+.+.|++|+|||++...+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999764
No 393
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.71 E-value=0.0073 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHhh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
+.|.|+.|+||||.++.|++.|.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999974
No 394
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.71 E-value=0.0073 Score=44.06 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
...-+++.|++|+|||++...+...-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999988753
No 395
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.68 E-value=0.0092 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||||+|||+++..++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998873
No 396
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.0051 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIV 72 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la 72 (202)
++.-+++.|++|+|||++...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 55679999999999999998875
No 397
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.071 Score=50.12 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=17.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++.||+|+|||..+...+..
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 5799999999999987554443
No 398
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.67 E-value=0.0093 Score=47.65 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+-.+.++|++|+|||+++..+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3446888899999999999999998765
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.66 E-value=0.0054 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+||||+.++|+..+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999999764
No 400
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.66 E-value=0.0085 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999988754
No 401
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.63 E-value=0.0081 Score=45.06 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.|.|+.|+||||.++.|++.|..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999865
No 402
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.63 E-value=0.0085 Score=43.94 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+-+++.|++|+|||++...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445999999999999999988765
No 403
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0083 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-+++.|++|+|||++...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3446999999999999999998765
No 404
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.60 E-value=0.0037 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.|+-.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999987543
No 405
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.60 E-value=0.0077 Score=42.80 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999998764
No 406
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.60 E-value=0.0073 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
-+++.|++|+|||++...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998853
No 407
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.58 E-value=0.034 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
...+.|.|+||+|||++...+...+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999998653
No 408
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.58 E-value=0.14 Score=47.62 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=17.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++.+|+|+|||.++......
T Consensus 56 ~vlv~apTGsGKTlv~~~~i~~ 77 (997)
T 4a4z_A 56 SVFVAAHTSAGKTVVAEYAIAM 77 (997)
T ss_dssp EEEEECCTTSCSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHH
Confidence 6899999999999865544443
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.58 E-value=0.0076 Score=43.28 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.-+++.|++|+|||++...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998754
No 410
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.57 E-value=0.0064 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
-+++.|++|+|||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999988853
No 411
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.56 E-value=0.023 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++.+++.|++|+|||++...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4556999999999999999988754
No 412
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.56 E-value=0.0079 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.-+++.|++|+|||+++..+...-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998653
No 413
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.56 E-value=0.0083 Score=42.55 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++.|++|+|||++...+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987653
No 414
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.56 E-value=0.0087 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345999999999999999988765
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.55 E-value=0.017 Score=47.01 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
++..+.+.|++|+|||+++..++..+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999998764
No 416
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.55 E-value=0.0082 Score=43.21 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999888543
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.011 Score=43.57 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+..-+++.|++|+|||++...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999998765
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=43.59 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999988765
No 419
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.53 E-value=0.0093 Score=47.97 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.++++||||+|||++|..++...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998763
No 420
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.53 E-value=0.012 Score=42.67 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+-+++.|++|+|||++...+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988653
No 421
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.53 E-value=0.0074 Score=44.77 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 588999999999999999865
No 422
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.52 E-value=0.01 Score=42.64 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
..-+++.|++|+|||++...+...-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3459999999999999999987653
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.52 E-value=0.011 Score=43.33 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++-+++.|++|+|||++...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3446999999999999999988754
No 424
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.52 E-value=0.0093 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-++|.|++|+|||++..++...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3456999999999999999988764
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.51 E-value=0.009 Score=43.78 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999988654
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.51 E-value=0.011 Score=42.82 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999998765
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.50 E-value=0.011 Score=43.81 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
...-+++.|++|+|||++...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3446999999999999999998765
No 428
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.50 E-value=0.011 Score=42.72 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+..-+++.|++|+|||++...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999888764
No 429
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.013 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..++.||||||||+++..+...+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999998877766553
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.48 E-value=0.011 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=20.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4456999999999999999998764
No 431
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.013 Score=42.99 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+-+++.|++|+|||++...+...-
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999998877653
No 432
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.47 E-value=0.0059 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5789999999999999999887543
No 433
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.46 E-value=0.011 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+-+++.|++|+|||++...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999988764
No 434
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.45 E-value=0.016 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++|.|++|+|||++|..+.+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 36999999999999999998775
No 435
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.45 E-value=0.012 Score=47.38 Aligned_cols=25 Identities=12% Similarity=0.099 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.|+||+|||+++..+|..+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999877543
No 436
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.45 E-value=0.0092 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.-+++.|++|+|||++...+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 437
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.44 E-value=0.011 Score=43.07 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4556999999999999999888643
No 438
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.44 E-value=0.041 Score=45.14 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.2
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
.+++.+|+|+|||..+...+-
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~~ 99 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISIL 99 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHHH
T ss_pred CEEEECCCCCcccHHHHHHHH
Confidence 378999999999987544333
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.43 E-value=0.0089 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+-+++.|++|+|||++...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999998765
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.42 E-value=0.011 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++-+++.|++|+|||++...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345999999999999999998764
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.41 E-value=0.029 Score=43.72 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++.+++.|++|+|||++..++...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988754
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.41 E-value=0.012 Score=43.11 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345999999999999999888765
No 443
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.40 E-value=0.0085 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+.+.++..+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 5789999999999999999887544
No 444
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.40 E-value=0.0056 Score=45.59 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=20.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+..+.+.|++|+|||++.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445899999999999999888654
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.014 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
...-+++.|++|+|||++...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456999999999999999998764
No 446
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0077 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+||||+++.|+..+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcccc
Confidence 4789999999999999999998643
No 447
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.37 E-value=0.13 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
++++.|.+|+|||++.+.+...+..
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999998776543
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.37 E-value=0.011 Score=43.49 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+++-+++.|++|+|||++...+...-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34469999999999999999987753
No 449
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.36 E-value=0.13 Score=41.01 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=18.9
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.++|+||+|||+|..++...
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 889999999999999988654
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.35 E-value=0.015 Score=43.71 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..+++||.|+|||++..+|.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999988876
No 451
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.013 Score=42.82 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
+..-+++.|++|+|||++...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455699999999999999998874
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.35 E-value=0.0091 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+|||+|.++|+..+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999997654
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.34 E-value=0.011 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++-+++.|++|+|||++...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345999999999999999998765
No 454
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.32 E-value=0.0093 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+|||++.++|+ .+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 54
No 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.32 E-value=0.02 Score=53.46 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695 25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
+|.+..++.+.+.+... . ....+.++|+.|+|||++|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~----d---~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL----R---PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC----C---SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc----C---CCeEEEEEcCCCccHHHHHHHHHH
Confidence 89998888887777631 1 122688999999999999999885
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.31 E-value=0.013 Score=43.01 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999988764
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.31 E-value=0.0058 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.++||+|+||||+++.|+..+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 4789999999999999999887543
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.28 E-value=0.013 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
+..-+++.|++|+|||++...+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445699999999999999998853
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.26 E-value=0.013 Score=43.43 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.+-+++.|++|+|||++...+...-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34459999999999999999988753
No 460
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.24 E-value=0.012 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999877665
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.012 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+.+-+++.|++|+|||++...+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3446999999999999999998765
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.24 E-value=0.01 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998775
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.24 E-value=0.0098 Score=43.00 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
..-+++.|++|+|||++...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345899999999999999988754
No 464
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.23 E-value=0.013 Score=43.75 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..-+++.|++|+|||++...+...-+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34689999999999999999876533
No 465
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.22 E-value=0.028 Score=48.13 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.3
Q ss_pred EEEEecCCCCcHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDF 70 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~ 70 (202)
.+++.+|+|+|||..+..
T Consensus 160 ~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CEEEECCSSTTSHHHHHH
T ss_pred CEEEECCCCccHHHHHHH
Confidence 589999999999997544
No 466
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.21 E-value=0.013 Score=42.76 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.-+++.|++|+|||++...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998765
No 467
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.19 E-value=0.01 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+++|.|++|+|||++|..+.+.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999887553
No 468
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.19 E-value=0.0099 Score=43.24 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
-+++.|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999988764
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.18 E-value=0.041 Score=52.68 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhccccCcC------------ccchhhhhcccccCCCCchhHHHHHHh----------H
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKG------------TSRFVHKFNSRIHFPNENHVSLYRLQL----------T 111 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~ 111 (202)
+.++||+|+||||++.+|.+...+ ... ....++-.++-....+.-+.+..++.+ .
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred EEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH
Q ss_pred HHHHHhhhhCC----------------------------------------ceEEEEecC-CCCChhHHHHHHHhcccCc
Q psy1695 112 NWIISNVTACD----------------------------------------RAIFIFDEV-DKFPKGLLDVIIPFIDHHA 150 (202)
Q Consensus 112 ~~~~~~l~~~~----------------------------------------~~viiiDEi-d~~~~~~~~~L~~~le~~~ 150 (202)
..+.+++..+. .+|+++||+ -.++++.-..+.+.+++..
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Q ss_pred ccccccCCceEEEEee
Q psy1695 151 VYNQISFQNTIFLFLS 166 (202)
Q Consensus 151 ~~~~~~~~~~~~Ilts 166 (202)
.+.++|++|
T Consensus 1265 -------~~~TvI~IA 1273 (1321)
T 4f4c_A 1265 -------EGRTCIVIA 1273 (1321)
T ss_dssp -------SSSEEEEEC
T ss_pred -------CCCEEEEec
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.17 E-value=0.012 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~ 73 (202)
++.-+++.|++|+|||++...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344589999999999999998864
No 471
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.14 E-value=0.014 Score=43.72 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++-+++.|++|+|||++...+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4456999999999999999988754
No 472
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.13 E-value=0.0053 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
+.+.||+|+|||++.++|+-.+.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 357899999999999999998766
No 473
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.11 E-value=0.013 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+++.|+||+|||+++..++..+..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 474
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.10 E-value=0.013 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+..-+++.|++|+|||++...+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3446899999999999999998653
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.014 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998765
No 476
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.09 E-value=0.015 Score=43.44 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~l 75 (202)
...-+++.|++|+|||++...+...-
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34459999999999999999998753
No 477
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.08 E-value=0.0093 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHh
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l 75 (202)
.+.|.||+|+|||++.++|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999997654
No 478
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.07 E-value=0.013 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+-+++.|++|+|||++...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999998765
No 479
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.07 E-value=0.011 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=19.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.+++.||+|+|||++.+.|+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 345799999999999999997654
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.06 E-value=0.013 Score=42.64 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+..-+++.|++|+|||++...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446999999999999999998754
No 481
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.05 E-value=0.013 Score=42.91 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~l 75 (202)
+-+++.|++|+|||++...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999988764
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.05 E-value=0.013 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.|.||+|+|||++.+.|+..+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998654
No 483
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.04 E-value=0.054 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
..++.-|+|+|||..+-+++..+..
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~ 82 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKK 82 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4678899999999998888777653
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.04 E-value=0.017 Score=42.60 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
...-+++.|++|+|||++...+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445899999999999999888754
No 485
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=43.60 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
..-+++.|++|+|||++...+....+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 34589999999999999999876533
No 486
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.00 E-value=0.016 Score=42.17 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
-+++.|++|+|||++...+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999888654
No 487
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.99 E-value=0.017 Score=42.39 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.-+++.|++|+|||++...+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999888654
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.98 E-value=0.014 Score=43.05 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888654
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.97 E-value=0.016 Score=45.32 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.+.|.|++|+|||++..++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998765
No 490
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.96 E-value=0.016 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy1695 53 AISLHGLPGTGKNYVTDFIVS 73 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~ 73 (202)
-+++.|++|+|||++...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998875
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.95 E-value=0.018 Score=42.87 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+++-+++.|++|+|||++...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4556999999999999999888764
No 492
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.95 E-value=0.014 Score=43.27 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.5
Q ss_pred eEEEEecCCCCcHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIV 72 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la 72 (202)
.-+++.|++|+|||++...+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999998874
No 493
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.95 E-value=0.02 Score=43.42 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
++.-+++.|++|+|||++...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999888654
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.94 E-value=0.014 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-+++.|++|+|||++...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3446999999999999999988643
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.93 E-value=0.014 Score=49.30 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695 53 AISLHGLPGTGKNYVTDFIVSSIFK 77 (202)
Q Consensus 53 ~~ll~Gp~GtGKT~la~~la~~l~~ 77 (202)
.+.+.||+|+|||++.+.|+.....
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5789999999999999999998644
No 496
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.92 E-value=0.016 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695 51 ALAISLHGLPGTGKNYVTDFIVSSIF 76 (202)
Q Consensus 51 pl~~ll~Gp~GtGKT~la~~la~~l~ 76 (202)
.+.+.+.||+|+|||++.+.++....
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34589999999999999999987644
No 497
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.92 E-value=0.018 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la~~ 74 (202)
.++-++|.|.+|+|||++..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4556999999999999999888654
No 498
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.89 E-value=0.012 Score=42.93 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=19.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHH
Q psy1695 50 KALAISLHGLPGTGKNYVTDFIV 72 (202)
Q Consensus 50 ~pl~~ll~Gp~GtGKT~la~~la 72 (202)
++.-+++.|++|+|||++...+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45569999999999999998874
No 499
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.88 E-value=0.013 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy1695 54 ISLHGLPGTGKNYVTDFIVSSI 75 (202)
Q Consensus 54 ~ll~Gp~GtGKT~la~~la~~l 75 (202)
+.+.||+|+|||||.++|+...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7899999999999999998763
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.016 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy1695 52 LAISLHGLPGTGKNYVTDFIVSS 74 (202)
Q Consensus 52 l~~ll~Gp~GtGKT~la~~la~~ 74 (202)
+-+++.|++|+|||++...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999988643
Done!