RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1695
(202 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-06
Identities = 39/239 (16%), Positives = 70/239 (29%), Gaps = 57/239 (23%)
Query: 7 FIQSSNVRV--LEEQLKQHVHGQELAISHICGALKNHFQNRYHN---------TKALAIS 55
++ + R L ++ +S I + N T + S
Sbjct: 307 LLKYLDCRPQDLPREVLT---TNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 56 LHGL-PGTGKNYVTDF--------IVSSIFKRY----KDKGTSRFVHKFNSR---IHFPN 99
L+ L P + I + + V+K + P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 100 ENHVSLYRLQLTNWI-ISNVTACDRAIF-------IFDEVDKFPKGLLDVIIPFIDHHAV 151
E+ +S+ + L + + N A R+I FD D P L I HH
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 152 ----YNQISFQNTIFL---FLSN---------SGGTEIMNTFLELRKSECIEFIFQCQP 194
+++ +FL FL + I+NT +L+ + +I P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDP 539
Score = 42.5 bits (99), Expect = 5e-05
Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 47/200 (23%)
Query: 4 TDKFIQSSNVRVLEEQL--KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPG 61
T +I+ + + Q+ K +V + + L+ + + G+ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLELRPAKN---VLIDGVLG 160
Query: 62 TGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC 121
+GK +V + S + K + +I W+ N+ C
Sbjct: 161 SGKTWVALDVCLS----------YKVQCKMDFKIF----------------WL--NLKNC 192
Query: 122 DRAIFIFDEVDKFPKGLLDVIIPFIDHHA--VYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
+ + + + K + DH + S Q + L + N L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLV 249
Query: 180 LR---KSECIE-FIFQCQPL 195
L ++ F C+ L
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL 269
Score = 35.2 bits (80), Expect = 0.011
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 41/140 (29%)
Query: 5 DKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTG- 63
D F+ + + + +++ K + +E I HI + ++ T L +L
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEE--IDHIIMS-----KDAVSGTLRLFWTLLSKQEEMV 79
Query: 64 ---------KNYVTDFIVSSIFKRYKDKG--TSRFVHKFNSRIHFPNEN------HVS-- 104
NY F++S I + T ++ + + R++ N+N +VS
Sbjct: 80 QKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRD-RLY--NDNQVFAKYNVSRL 134
Query: 105 ---------LYRLQLTNWII 115
L L+ ++
Sbjct: 135 QPYLKLRQALLELRPAKNVL 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 34.8 bits (79), Expect = 0.015
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 33/182 (18%)
Query: 31 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 90
+ + L N +N H+ + G PGTGK + +++ YKDK T+RFV+
Sbjct: 26 LQQLDILLGNWLRNPGHHYPRATLL--GRPGTGKTVT----LRKLWELYKDKTTARFVY- 78
Query: 91 FNSRIHFPNENHVSLYRLQLTNWIISNVTAC------------------DRAIFIFDEVD 132
N I+ N ++ + I + D+
Sbjct: 79 INGFIYR---NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAF 135
Query: 133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQC 192
+L I + + ++ ++N + +++ +
Sbjct: 136 NLAPDILSTFIRLGQEADKLGAFRI---ALVIVGHN--DAVLNNLDPSTRGIMGKYVIRF 190
Query: 193 QP 194
P
Sbjct: 191 SP 192
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 33.7 bits (76), Expect = 0.025
Identities = 10/125 (8%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS 85
Q + I + + + + + + K + + ++ + K
Sbjct: 24 SQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELP 79
Query: 86 RF-VHKFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVII 143
F + + + + ++ ++ + + + F V K K ++I
Sbjct: 80 IFDYIHIDALELAGMDALYEKIWF-AISKENLCGDISLEALNFYITNVPKAKKRKTLILI 138
Query: 144 PFIDH 148
++
Sbjct: 139 QNPEN 143
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 34.0 bits (77), Expect = 0.027
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 3/131 (2%)
Query: 37 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 96
L K L+GL GTGK V ++ + R G N+R
Sbjct: 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89
Query: 97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS 156
E + + +++ + K L + I +D +
Sbjct: 90 ---ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP 146
Query: 157 FQNTIFLFLSN 167
+ ++
Sbjct: 147 GGQDLLYRITR 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.032
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 35/98 (35%)
Query: 82 KGTSR-----FVHKFNSRIHFPNENHV------------------SLYRLQLTNWIISNV 118
++ +V+K NS H P V SLY L LT +
Sbjct: 342 SNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT---LRKA 396
Query: 119 TA---CDRAIFIFDE-VDKFPKGLLDVIIPFIDHHAVY 152
A D++ F E KF L V PF H+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHL 431
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.6 bits (71), Expect = 0.14
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 16/170 (9%)
Query: 37 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----------GTS 85
+ + Y K I ++GL GTGK V F++S + K++ K T
Sbjct: 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90
Query: 86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR-AIFIFDEVDKFPKGLLDVIIP 144
V L +L ++ V + + DE+D F K D I+
Sbjct: 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILY 150
Query: 145 FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQP 194
+ + ++++ F+ ++N + ++ KS E P
Sbjct: 151 KLS--RINSEVNKSKISFIGITND--VKFVDLLDPRVKSSLSEEEIIFPP 196
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 31.5 bits (72), Expect = 0.20
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 16 LEEQLKQHVHGQELAISHICGALK 39
L ++LK V GQ+ AI + A+K
Sbjct: 452 LGDRLKMLVFGQDKAIEALTEAIK 475
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 30.8 bits (70), Expect = 0.27
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 110 LTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG 169
L++ + + + F + + ++ + + ++ +S SG
Sbjct: 94 LSHTFHNQMNDTTQIYFAGQNIS--STYISHLL----------DVLEGKDLSINVISKSG 141
Query: 170 GT-EIMNTFLELRK 182
T E F R
Sbjct: 142 TTTEPAIAFRIFRD 155
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 0.84
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 56 LHGLPGTGKNYVTDFIVSSIFKR------YKDKGTSRFVHKFNSRIHFPNENH-VSLYRL 108
+ G+PG GK T I+S + + + N+ V
Sbjct: 166 VDGVPGCGK---TKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 222
Query: 109 QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-----NQISFQNTIFL 163
L N+ R DE G ++ ++ Y QI + N +
Sbjct: 223 FLMNYGKGARCQFKR--LFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG 280
Query: 164 FL 165
F
Sbjct: 281 FP 282
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.0 bits (64), Expect = 1.0
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 37 ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH 89
+ N + GL GTGK +V+ +I + I + K+ + V
Sbjct: 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVK 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 5 DKFIQSSNVRVLEEQLKQHVHGQ--ELAIS 32
+K Q+ ++ L+ LK + LAI
Sbjct: 18 EK--QA--LKKLQASLKLYADDSAPALAIK 43
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.9 bits (62), Expect = 1.9
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR 86
Q + + ALK + K ++ G P TGK+ + + ++ +
Sbjct: 105 QNIELITFINALKLWLKGIP---KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV------- 154
Query: 87 FVHKFNSRIHFP 98
+ N + HF
Sbjct: 155 -LSFANHKSHFW 165
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 2.0
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 84 TSRFVHKFNSRIHFPNENHVSLYRL------QLTNWII----SNVTACDRAI-FIFDEVD 132
TSRF + + S+Y L ++ + + I FI+D
Sbjct: 508 TSRFSK---QVTDY----YQSIYAKYGAKGSTL--IVVPFNQGSKQDVEALIEFIYDTEK 558
Query: 133 KFPKGL-LDVIIPFIDHHAVYNQIS 156
G LD IIPF ++
Sbjct: 559 NGGLGWDLDAIIPFAAIPEQGIELE 583
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 102 HVSLYRLQLTNWIISNVTACDRAIF---IFDEVDKFPKGLLDVII 143
V++ + + I + V AC A + V+ G + I
Sbjct: 1087 WVNMLLISSSGPIKTPVGAC--ATSVESVDIGVETILSGKARICI 1129
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 27.8 bits (61), Expect = 2.8
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD--EVDKFPKGLLDVIIPFIDHHAVYN 153
+ + L + + + ++ D + K K +D ++ IDHH
Sbjct: 94 KLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQ 153
Query: 154 QISFQNTIFLFLSNSGGTEIMNTFLE 179
+ + +S S + + N + E
Sbjct: 154 KHLDAEPRIVKVSGSCSSLVFNYWYE 179
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 27.3 bits (61), Expect = 3.3
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 132 DKFPKGLLDVIIPFIDH-------HAVYNQISFQNTIFLFLSNSGGT-EIMNTFLELRK 182
F I F+ + + + ++ ++ +S SG T E F ++
Sbjct: 100 SSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQ 158
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (62), Expect = 3.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 16 LEEQLKQHVHGQELAISHICGALK 39
+E L V GQ+ A+ + A++
Sbjct: 485 MENILHSRVIGQDEAVVAVAKAVR 508
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 26.8 bits (59), Expect = 5.4
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 26 GQELAISHICGALKNHFQNRYHNTKAL---------AISLHGLPGTGK 64
G + ++ + L N ++ ++ K A L+G PG GK
Sbjct: 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGK 90
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 26.2 bits (57), Expect = 7.8
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 15/92 (16%)
Query: 56 LHGLPGTGK-NYVTDFIVSSIFKRYKDKGTSRFV------------HKFNSRIHFPNENH 102
+ G PG+GK + + + + + G R V + P
Sbjct: 10 ITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTD 69
Query: 103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134
L + WI +I I DE
Sbjct: 70 EQLSAHDMYEWI--KKPENIGSIVIVDEAQDV 99
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 26.0 bits (58), Expect = 8.8
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 12/59 (20%)
Query: 16 LEEQLKQHVHGQELAISHICGA----LKNHFQNR----YHNT----KALAISLHGLPGT 62
++ K + + L NH QNR + A LPG
Sbjct: 273 FNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGN 331
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.1 bits (57), Expect = 9.1
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 4 TDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTG 63
+ + R GQ+ A + + A+K K ++G GTG
Sbjct: 11 SSGLVP----RGSHMTFDDLTEGQKNAFNIVMKAIKE--------KKHHVT-INGPAGTG 57
Query: 64 KNYVTDFIVSSIFKRYKDK 82
+T FI+ ++ +
Sbjct: 58 ATTLTKFIIEALISTGETG 76
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 25.8 bits (56), Expect = 9.5
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW 113
I L G PG GK + + S +Y + + + E +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYIN--VGDLAREEQLYDGYDEEYDCPILDEDRVVD 71
Query: 114 IISNVTACDRAIFIFDEVDKFPKGLLDVII 143
+ N I + D FP+ ++
Sbjct: 72 ELDNQMREGGVIVDYHGCDFFPERWFHIVF 101
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 26.0 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 54 ISLHGLPGTGKNYVTDFIVSSI-FKRYK 80
I L G+ +GK+ DFI+S+ +Y+
Sbjct: 4 IFLSGVKRSGKDTTADFIMSNYSAVKYQ 31
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 26.1 bits (57), Expect = 10.0
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 76 FKRYKDKGTSRFVHKFNSRIHFPNENHVSLY 106
R+ K K + FP +
Sbjct: 238 MVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.422
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,131,179
Number of extensions: 176357
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 35
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)