BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16950
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMX|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMZ|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1OMZ|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1ON6|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON6|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON8|A Chain A, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
pdb|1ON8|B Chain B, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
Length = 293
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 25/261 (9%)
Query: 164 ASEQFTAIIYAQLGTSLYKVIRNVAHSQYVS---RIIVLWSSPDKPVPAFL--SRHNATL 218
A + FT I+ T L ++R + H Q V ++IV+W++ + P L S +
Sbjct: 26 ALDSFTLIMQTYNRTDL--LLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPI 83
Query: 219 PPIHILTHITDISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFAFHVWKSFPERIVGYPA 278
P I + +R V TNAVL +D+D ++ ++ FAF +W+ FP++I+G+
Sbjct: 84 PVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVP 143
Query: 279 RSHFWDDAK-NSWGYTSKWT------NDYSIVLTGAAFYHRYYNYLYSHWLSPLLLKTVA 331
R H + S+G T + YS+VL GA+F++ Y L+ + + +
Sbjct: 144 RKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLELFQKQPAA-VHALID 202
Query: 332 QSHNCEDILMNFLVSHVTRRP------PIKVTGRKHYKETSGGGSRSPWNDPDHFIQRQT 385
++ NC+DI MNFLV+ T +P PI + + KET+G W+ +HF+QR
Sbjct: 203 ETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLE--KETNGYSGM--WHRAEHFLQRSY 258
Query: 386 CLNTFAAVFGYMPLLRSHMRL 406
C+N ++ MPL S++ +
Sbjct: 259 CINKLVNIYDGMPLKYSNIMI 279
>pdb|1BGY|C Chain C, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|O Chain O, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|C Chain C, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|C Chain C, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|C Chain C, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|C Chain C, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|C Chain C, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|C Chain C, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|C Chain C, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|C Chain C, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|P Chain P, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|C Chain C, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|P Chain P, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|C Chain C, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|C Chain C, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|P Chain P, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|C Chain C, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|C Chain C, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|C Chain C, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|C Chain C, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|C Chain C, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|C Chain C, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|CC Chain c, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 379
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 23 CL---VPRGRRLGSFRFLETLQAGCIPVILS-----NGWVLPFDQVIDWSKAAVWADERL 74
CL V RG GS+ FLET G I ++ G+VLP+ Q+ W + L
Sbjct: 93 CLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVI---TNL 149
Query: 75 LLQVP 79
L +P
Sbjct: 150 LSAIP 154
>pdb|1QCR|C Chain C, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 378
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 23 CL---VPRGRRLGSFRFLETLQAGCIPVILS-----NGWVLPFDQVIDWSKAAVWADERL 74
CL V RG GS+ FLET G I ++ G+VLP+ Q+ W + L
Sbjct: 92 CLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVI---TNL 148
Query: 75 LLQVP 79
L +P
Sbjct: 149 LSAIP 153
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 32/126 (25%)
Query: 211 LSRHNATLPPIHILTHITDISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFAFHVWKSFP 270
L+ ++T+P + I D + L + +S+DED L T + D+ F +++
Sbjct: 228 LNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDED--LFTGDGDYQFDIYRLMK 285
Query: 271 ERIVGYPARSHFWDDAKNSWGYTSKWTNDYSIVLTGAAFYHRYYNYLYSHWLSPLLLKTV 330
+ + N WG YH Y N L+ H+L+ +LK +
Sbjct: 286 K-------------ENNNRWGE-----------------YHPYSNVLWLHYLTDKMLKQM 315
Query: 331 AQSHNC 336
C
Sbjct: 316 TFKTKC 321
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 32/126 (25%)
Query: 211 LSRHNATLPPIHILTHITDISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFAFHVWKSFP 270
L+ ++T+P + I D + L + +S+DED L T + D+ F +++
Sbjct: 223 LNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDED--LFTGDGDYQFDIYRLMK 280
Query: 271 ERIVGYPARSHFWDDAKNSWGYTSKWTNDYSIVLTGAAFYHRYYNYLYSHWLSPLLLKTV 330
+ + N WG YH Y N L+ H+L+ +LK +
Sbjct: 281 K-------------ENNNRWGE-----------------YHPYSNVLWLHYLTDKMLKQM 310
Query: 331 AQSHNC 336
C
Sbjct: 311 TFKTKC 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,331,255
Number of Sequences: 62578
Number of extensions: 548977
Number of successful extensions: 1375
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 8
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)