RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16950
(430 letters)
>gnl|CDD|220155 pfam09258, Glyco_transf_64, Glycosyl transferase family 64 domain.
Members of this family catalyze the transfer reaction of
N-acetylglucosamine and N-acetylgalactosamine from the
respective UDP-sugars to the non-reducing end of
[glucuronic acid]beta 1-3[galactose]beta
1-O-naphthalenemethanol, an acceptor substrate analog of
the natural common linker of various
glycosylaminoglycans. They are also required for the
biosynthesis of heparan-sulphate.
Length = 244
Score = 326 bits (839), Expect = e-111
Identities = 128/251 (50%), Positives = 172/251 (68%), Gaps = 14/251 (5%)
Query: 168 FTAIIYAQL--GTSLYKVIRNVAHSQYVSRIIVLWSSPDKPVPAFLSRHNATLPPIHILT 225
FTA+I L K++ + A S ++++I+VLW++P KP P + P +
Sbjct: 1 FTAVINTYYSRIDLLRKLLNHYAGSPHLAKIVVLWNNP-KPPPE-----LSKWPSPAVPL 54
Query: 226 HITD-----ISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFAFHVWKSFPERIVGYPARS 280
+ +++RFL + T+AVLSLD+D L+TDE+DFAF VW+SFP+RIVG+P RS
Sbjct: 55 TVIRTKRNSLNNRFLPYPEIETDAVLSLDDDILLSTDELDFAFSVWQSFPDRIVGFPPRS 114
Query: 281 HFWDDAKNSWGYTSKWTNDYSIVLTGAAFYHRYYNYLYSHWLSPLLLKTVAQSHNCEDIL 340
HFWD +K WGYTS+WTNDYS+VLTGAAFYHRYY YLY+H L + V ++ NCEDIL
Sbjct: 115 HFWDLSKGRWGYTSEWTNDYSMVLTGAAFYHRYYLYLYTHSLPKSIRDLVDETRNCEDIL 174
Query: 341 MNFLVSHVTRRPPIKVTGRKHYKETSGGGSRSPWNDPDHFIQRQTCLNTFAAVFGYMPLL 400
MNFLV++VT +PPIKVT RK YKE G +DP HF+QR C+N F+ +FGYMPL+
Sbjct: 175 MNFLVANVTGKPPIKVTSRKQYKE-GRNGKVGLSSDPGHFLQRSKCINKFSKIFGYMPLV 233
Query: 401 RSHMRLDPVLY 411
S++R DPVL+
Sbjct: 234 YSYIRADPVLF 244
>gnl|CDD|217320 pfam03016, Exostosin, Exostosin family. The EXT family is a family
of tumour suppressor genes. Mutations of EXT1 on 8q24.1,
EXT2 on 11p11-13, and EXT3 on 19p have been associated
with the autosomal dominant disorder known as hereditary
multiple exostoses (HME). This is the most common known
skeletal dysplasia. The chromosomal locations of other
EXT genes suggest association with other forms of
neoplasia. EXT1 and EXT2 have both been shown to encode
a heparan sulphate polymerase with both D-glucuronyl
(GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC)
transferase activities. The nature of the defect in
heparan sulphate biosynthesis in HME is unclear.
Length = 292
Score = 105 bits (265), Expect = 6e-26
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 6 PLCFRYDFQVLLHNSTFCLVPRGRRLGSFRFLETLQAGCIPVILSNGWVLPFDQVIDWSK 65
++ LL +S FCLVP G S R + L+AGCIPVI+S+GW LPF+ VIDWSK
Sbjct: 213 SCGNPENYMELLRSSRFCLVPPGDTPTSPRLFDALRAGCIPVIISDGWELPFEDVIDWSK 272
Query: 66 AAVWADERLLLQVPDTVRSI 85
+V E + +P+ +R+I
Sbjct: 273 FSVRVPENDIPSLPEILRAI 292
>gnl|CDD|173135 PRK14672, uvrC, excinuclease ABC subunit C; Provisional.
Length = 691
Score = 32.0 bits (72), Expect = 0.69
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 203 PDKPVPAFLSRHNATLPPIHILTHITDISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFA 262
P+ P P L R N P +H+L I D +HRF +T N L ++ L+ + +
Sbjct: 564 PNSPTPLVLDRRN---PALHMLQRIRDEAHRF----AITRNRHLRTKKELVLSFERLP-- 614
Query: 263 FHVWKSFPERIVGY 276
HV K R++ +
Sbjct: 615 -HVGKVRAHRLLAH 627
>gnl|CDD|226156 COG3629, DnrI, DNA-binding transcriptional activator of the SARP
family [Signal transduction mechanisms].
Length = 280
Score = 29.7 bits (67), Expect = 2.6
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 187 VAHSQYVSR---IIVLWSSPDKPVPAFLSRHNATLPPIHILTHITDISHRFLHT--SLVT 241
++ ++ VSR +LW D A + +H L + L T VT
Sbjct: 35 LSRNKPVSREKLAGLLWEDSDPSR-ARANLRTT----LHNLRKLLGDGDVILATEGPGVT 89
Query: 242 TNAVLSLDEDA 252
N + DA
Sbjct: 90 LNPGADITIDA 100
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 29.4 bits (66), Expect = 4.1
Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 57 FDQVIDWSKAAV-WADERL 74
FDQV W KA W D L
Sbjct: 347 FDQVAAWKKAERAWVDGYL 365
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase.
Length = 268
Score = 29.1 bits (65), Expect = 4.4
Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 56 PFDQVIDWSKAAV-WADER 73
P+++ +DW+K + WADER
Sbjct: 64 PYNKTVDWAKWYIFWADER 82
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 29.0 bits (65), Expect = 6.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 391 AAVFGYMPLLRSHMRLDPVLY-KDPVSNLRKKYRQMELV 428
A + G PL +RLDP L + ++KY EL
Sbjct: 529 AKITGDRPLPVEKLRLDPALSSAADIEAFKEKYEAQELK 567
>gnl|CDD|222901 PHA02597, 30.2, hypothetical protein; Provisional.
Length = 197
Score = 28.1 bits (63), Expect = 6.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 196 IIVLWSSPDKPVPAFLSRHNATLPPIHILTHITDISHR 233
+++ W S +P F ++N +P HIL I D R
Sbjct: 12 VLLSWQSG---LPYFAQKYN--IPTDHILKMIQDERFR 44
>gnl|CDD|164767 MTH00224, CYTB, cytochrome b; Provisional.
Length = 379
Score = 28.3 bits (63), Expect = 8.2
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 25 VPRGRRLGSFRFLETLQAGCIPVILS-----NGWVLPFDQVIDW 63
V RG GSF ET G I IL+ G+VLP+ Q+ W
Sbjct: 99 VGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFW 142
>gnl|CDD|177102 MTH00016, CYTB, cytochrome b; Validated.
Length = 378
Score = 28.5 bits (64), Expect = 8.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 22 FCLVPRGRRLGSFRFLETLQAGCIPVILSN-----GWVLPFDQVIDW 63
+ + RG GS+ +ET G I ++L+ G+VLP+ Q+ W
Sbjct: 96 YLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFW 142
>gnl|CDD|237784 PRK14669, uvrC, excinuclease ABC subunit C; Provisional.
Length = 624
Score = 28.3 bits (63), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 196 IIVLWSSPDKPVPAFLSRHNATLPPIHILTHITDISHRF 234
II ++ D+P+ L R + P +H++ I D +HRF
Sbjct: 503 IIYVFGQEDEPI--VLDRFS---PVLHLVQSIRDEAHRF 536
>gnl|CDD|237449 PRK13616, PRK13616, lipoprotein LpqB; Provisional.
Length = 591
Score = 28.0 bits (63), Expect = 9.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 139 GALLVHSQFSD--STADYPFYASFEPNASEQFTAIIYAQLGTSLYKVIRNVA 188
GA L +F++ +T+D A +P A++ A ++A + SL V
Sbjct: 292 GAPLD-DRFAEGWTTSDV---AETDPGAADGAAAGLHALVDGSLVSVDGQGV 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.439
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,625,494
Number of extensions: 2189826
Number of successful extensions: 2253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2250
Number of HSP's successfully gapped: 20
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)