RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16950
         (430 letters)



>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score =  128 bits (322), Expect = 5e-35
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 15/266 (5%)

Query: 164 ASEQFTAIIYAQLG-TSLYKVIRNVAHSQYVSRIIVLWSSPDKPVPAFLSRHNATLPPI- 221
           A + FT I+        L +++ +      + ++IV+W++  +  P  L       P   
Sbjct: 1   ALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPV 60

Query: 222 -HILTHITDISHRFLHTSLVTTNAVLSLDEDATLNTDEIDFAFHVWKSFPERIVGYPARS 280
                    + +R      V TNAVL +D+D  ++  ++ FAF +W+ FP++I+G+  R 
Sbjct: 61  IFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRK 120

Query: 281 HFWDDAK-------NSWGYTSKWTNDYSIVLTGAAFYHRYYNYLYSHWLSPLLLKTVAQS 333
           H    +                  + YS+VL GA+F++  Y  L+       +   + ++
Sbjct: 121 HVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLELFQKQP-AAVHALIDET 179

Query: 334 HNCEDILMNFLVSHVTRRPPIKVTGRKHYKET--SGGGSRSPWNDPDHFIQRQTCLNTFA 391
            NC+DI MNFLV+  T +P        +         G    W+  +HF+QR  C+N   
Sbjct: 180 QNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWHRAEHFLQRSYCINKLV 239

Query: 392 AVFGYMPLLRSHMRLDPVLYKDPVSN 417
            ++  MPL  S++ +    +  P +N
Sbjct: 240 NIYDGMPLKYSNIMISQFGF--PYAN 263


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 30.9 bits (70), Expect = 0.27
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 8/42 (19%)

Query: 372 SPWNDPDH------FIQRQTCLNTFAAVFGYMPLLRSHMRLD 407
           +P   P          Q  T      A+ G+     + M+++
Sbjct: 349 APVVPPGTPISNAFMRQFSTLTKLVTALAGFPSD--TDMQIE 388


>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 347

 Score = 27.6 bits (59), Expect = 3.0
 Identities = 7/70 (10%), Positives = 23/70 (32%)

Query: 44  CIPVILSNGWVLPFDQVIDWSKAAVWADERLLLQVPDTVRSISATQVLAARQQTQVLWER 103
            + V   +  V   D V+  +   V   + +  +       + A          +  +++
Sbjct: 242 GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301

Query: 104 YFSSIEKIVF 113
             + + ++ F
Sbjct: 302 LRAPVGRVYF 311


>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 27.4 bits (61), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 25  VPRGRRLGSFRFLETLQAGCIPVILSN-----GWVLPFDQVIDW 63
           V RG   GS+ FLET   G I ++        G+VLP+ Q+  W
Sbjct: 84  VGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFW 127


>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 82

 Score = 25.5 bits (56), Expect = 3.6
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 338 DILMNFLVSHVTRRPPIKVTGR 359
            IL+++L  +V    P+   G 
Sbjct: 36  GILLDYLAKNVPLEKPVLAVGN 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,718,807
Number of extensions: 81114
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 9
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)