BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16952
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FQU|A Chain A, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|B Chain B, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|C Chain C, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|D Chain D, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|E Chain E, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|F Chain F, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|G Chain G, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
 pdb|4FQU|H Chain H, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
          Chlorophenolicum
          Length = 313

 Score = 29.6 bits (65), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 41 VDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQE---LLYAGM 87
          +DGV   A+ D     G F R+E+Q     G ++  FRG+     LYAG 
Sbjct: 5  IDGVWRDAWYDTKSSGGRFVRKESQ---YRGGLDAGFRGEPGRYHLYAGF 51


>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
           Superfamily Member 1 (Enosf1)
          Length = 441

 Score = 27.3 bits (59), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 36  NLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMP 88
            L++++D  + V+ +D    +   T E+A E ++ G I    R +++L  G P
Sbjct: 137 KLLVDMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYP 189


>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
          Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
          Ps3
          Length = 473

 Score = 25.8 bits (55), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 68 VEMGAINGLFRGQELLYAGMPIS 90
          + M + +GL RG E++  G PIS
Sbjct: 62 IAMASTDGLIRGMEVIDTGAPIS 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,465,112
Number of Sequences: 62578
Number of extensions: 169898
Number of successful extensions: 380
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)