BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16952
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1
Length = 1091
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 77/84 (91%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQEL+YAGMPI++V K+ MGIGGVL LLWFQR+LP Y C+F+EM LMVTADHGPAVSGA
Sbjct: 838 RGQELIYAGMPITEVFKEEMGIGGVLGLLWFQRRLPKYSCQFIEMCLMVTADHGPAVSGA 897
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTI+CARAGKDLVSSL SGLLTI
Sbjct: 898 HNTIICARAGKDLVSSLTSGLLTI 921
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 71/77 (92%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
MRV+I+K+FV Q+FP TPLL+YALEVEKITTSKKPNLILNVDG I VAFVD+LR+ GSFT
Sbjct: 975 MRVQILKDFVKQHFPATPLLDYALEVEKITTSKKPNLILNVDGFIGVAFVDMLRNCGSFT 1034
Query: 61 REEAQEYVEMGAINGLF 77
REEA EYV++GA+NG+F
Sbjct: 1035 REEADEYVDIGALNGIF 1051
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1
Length = 1100
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 77/84 (91%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQEL+YAGMPI++V K+ MGIGGVL LLWFQR+LP Y C+F+EM LMVTADHGPAVSGA
Sbjct: 847 RGQELIYAGMPITEVFKEEMGIGGVLGLLWFQRRLPKYSCQFIEMCLMVTADHGPAVSGA 906
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTI+CARAGKDLVSSL SGLLTI
Sbjct: 907 HNTIICARAGKDLVSSLTSGLLTI 930
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 71/77 (92%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
MRV+I+K+FV Q+FP TPLL+YALEVEKITTSKKPNLILNVDG I VAFVD+LR+ GSFT
Sbjct: 984 MRVQILKDFVKQHFPATPLLDYALEVEKITTSKKPNLILNVDGFIGVAFVDMLRNCGSFT 1043
Query: 61 REEAQEYVEMGAINGLF 77
REEA EYV++GA+NG+F
Sbjct: 1044 REEADEYVDIGALNGVF 1060
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1
Length = 1091
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 77/84 (91%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQEL+YAGMPI++V K+ MGIGGVL LLWFQ++LP Y C+F+EM LMVTADHGPAVSGA
Sbjct: 838 RGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADHGPAVSGA 897
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTI+CARAGKDLVSSL SGLLTI
Sbjct: 898 HNTIICARAGKDLVSSLTSGLLTI 921
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 72/77 (93%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
MRV+I+K++V Q+FP TPLL+YALEVEKITTSKKPNLILNVDG+I VAFVD+LRH GSFT
Sbjct: 975 MRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVDGLIGVAFVDMLRHCGSFT 1034
Query: 61 REEAQEYVEMGAINGLF 77
REEA EY+++GA+NG+F
Sbjct: 1035 REEADEYIDIGALNGIF 1051
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1
Length = 1101
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 77/84 (91%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQEL+YAGMPI++V K+ MGIGGVL LLWFQ++LP Y C+F+EM LMVTADHGPAVSGA
Sbjct: 848 RGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADHGPAVSGA 907
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTI+CARAGKDLVSSL SGLLTI
Sbjct: 908 HNTIICARAGKDLVSSLTSGLLTI 931
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 72/77 (93%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
MRV+I+K++V Q+FP TPLL+YALEVEKITTSKKPNLILNVDG+I VAFVD+LRH GSFT
Sbjct: 985 MRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVDGLIGVAFVDMLRHCGSFT 1044
Query: 61 REEAQEYVEMGAINGLF 77
REEA EY+++GA+NG+F
Sbjct: 1045 REEADEYIDIGALNGIF 1061
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3
Length = 1101
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 77/84 (91%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQEL+YAGMPI++V K+ MGIGGVL LLWFQ++LP Y C+F+EM LMVTADHGPAVSGA
Sbjct: 848 RGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADHGPAVSGA 907
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTI+CARAGKDLVSSL SGLLTI
Sbjct: 908 HNTIICARAGKDLVSSLTSGLLTI 931
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 72/77 (93%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
MRV+I+K++V Q+FP TPLL+YALEVEKITTSKKPNLILNVDG+I VAFVD+LR+ GSFT
Sbjct: 985 MRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVDGLIGVAFVDMLRNCGSFT 1044
Query: 61 REEAQEYVEMGAINGLF 77
REEA EY+++GA+NG+F
Sbjct: 1045 REEADEYIDIGALNGIF 1061
>sp|Q8X097|ACL1_NEUCR Probable ATP-citrate synthase subunit 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B14D6.310 PE=3 SV=1
Length = 670
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQELLYAGMPISDV K+ +GIGGV+SLLWF+R+LP Y KFLEM LM+TADHGPAVSGA
Sbjct: 404 RGQELLYAGMPISDVFKEEIGIGGVMSLLWFRRRLPDYAAKFLEMVLMLTADHGPAVSGA 463
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
NTI+ RAGKDL+SSLV+GLLTI
Sbjct: 464 MNTIITTRAGKDLISSLVAGLLTI 487
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
+RV+++KE+V FP+T LL+YAL VE +TTSKK NLILNVDG IAV FVDLLR+ G+F+
Sbjct: 541 LRVELVKEYVKAKFPSTKLLDYALAVESVTTSKKDNLILNVDGCIAVCFVDLLRNCGAFS 600
Query: 61 REEAQEYVEMGAINGLF 77
EEA++Y+ MG +NGLF
Sbjct: 601 TEEAEDYLSMGVLNGLF 617
>sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1
PE=2 SV=1
Length = 1106
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 76/84 (90%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG+EL YAG+PI+ VL+ +MGIGGVL LLWFQ++LPP+ KF+E+ LM+TADHGPAVSGA
Sbjct: 848 RGEELNYAGVPITKVLESDMGIGGVLGLLWFQKRLPPHANKFIEICLMLTADHGPAVSGA 907
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTIVCARAGKDL+SSL SGLLTI
Sbjct: 908 HNTIVCARAGKDLISSLTSGLLTI 931
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Query: 2 RVKIIKEFVLQN---FPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGS 58
RV+I+K F + TPL YALEVEKITT+KKPNLILNVDG IA+ FVD+LRHSG
Sbjct: 986 RVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKPNLILNVDGAIAILFVDILRHSGM 1045
Query: 59 FTREEAQEYVEMGAINGLF 77
FT++EA+E +E+G++NGLF
Sbjct: 1046 FTKQEAEETIEIGSLNGLF 1064
>sp|O93988|ACL1_SORMK ATP-citrate synthase subunit 1 OS=Sordaria macrospora (strain ATCC
MYA-333 / DSM 997 / K(L3346) / K-hell) GN=ACL1 PE=3 SV=1
Length = 674
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 75/84 (89%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RGQELLYAGMPISDV ++ +GIGGV+SLLWF+R+LP Y KFLEM LM+TADHGPAVSGA
Sbjct: 408 RGQELLYAGMPISDVFREEIGIGGVMSLLWFRRRLPDYAAKFLEMVLMLTADHGPAVSGA 467
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
NTI+ RAGKDL+SSLV+GLLTI
Sbjct: 468 MNTIITTRAGKDLISSLVAGLLTI 491
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 64/77 (83%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
+RV+++KE+V FP++ LL+YAL VE +TTSKK NLILNVDG IAV FVDLLR+ G+F+
Sbjct: 545 LRVELVKEYVKAKFPSSKLLDYALAVETVTTSKKDNLILNVDGCIAVCFVDLLRNCGAFS 604
Query: 61 REEAQEYVEMGAINGLF 77
EEA++Y+ MG +NGLF
Sbjct: 605 TEEAEDYLSMGVLNGLF 621
>sp|Q54YA0|ACLY_DICDI Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly
PE=1 SV=1
Length = 622
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 68/84 (80%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG EL YAG+PIS+V K+ +G V+ LLWF+R+LPPY KF EM L + ADHGP VSGA
Sbjct: 375 RGDELSYAGVPISEVCKEQYNMGDVIGLLWFKRKLPPYASKFFEMCLKLVADHGPCVSGA 434
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTIV ARAGKDLVSSLVSGLLTI
Sbjct: 435 HNTIVAARAGKDLVSSLVSGLLTI 458
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 61
RV ++K++ +F +T L YALEVEK T K NLILNVDG I V F+DLL SG FT+
Sbjct: 513 RVVLLKDYAFTHFSSTKYLEYALEVEKYTLQKANNLILNVDGCIGVLFLDLLHSSGLFTQ 572
Query: 62 EEAQEYVEMGAINGLF 77
E +E +++G +NG F
Sbjct: 573 HEIKEIIDVGYLNGFF 588
>sp|Q9C522|ACLB1_ARATH ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana
GN=ACLB-1 PE=2 SV=1
Length = 608
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG+E YAG+P+S +++Q G+G V+SLLWF+R LP Y KF+E+ +M+ ADHGP VSGA
Sbjct: 361 RGEEPCYAGVPMSSIIEQGYGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVSGA 420
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTIV ARAGKDLVSSLVSGLLTI
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTI 444
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 61
RV+++++F NFP + YA++VE T SK NL+LNVDG I F+DLL SG FT+
Sbjct: 499 RVELLQKFARSNFPAVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTK 558
Query: 62 EEAQEYVEMGAINGLF 77
+E E V++G +NGLF
Sbjct: 559 QEIDEIVQIGYLNGLF 574
>sp|Q9FGX1|ACLB2_ARATH ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana
GN=ACLB-2 PE=1 SV=1
Length = 608
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG+E YAG+P+S +++Q G+G V+SLLWF+R LP Y KF+E+ +M+ ADHGP VSGA
Sbjct: 361 RGEEPCYAGVPMSSIIEQGYGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVSGA 420
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTIV ARAGKDLVSSLVSGLLTI
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTI 444
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 61
RV+++++F NFP+ + YA+ VE T SK NL+LNVDG I F+DLL SG FT+
Sbjct: 499 RVELLQKFARSNFPSVKYMEYAVTVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTK 558
Query: 62 EEAQEYVEMGAINGLF 77
+E E V++G +NGLF
Sbjct: 559 QEIDEIVQIGYLNGLF 574
>sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp.
japonica GN=ACLB-1 PE=2 SV=1
Length = 608
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 70/84 (83%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG+E YAG+P+S +++Q G+G V+SLLWF+R LP Y +F+EM +M+ ADHGP VSGA
Sbjct: 361 RGEEPCYAGVPMSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVSGA 420
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HN+IV ARAGKDLVSSLVSGLLTI
Sbjct: 421 HNSIVTARAGKDLVSSLVSGLLTI 444
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 61
RV++++++ +FP+ + YA++VE T SK NL+LNVDG I F+DLL SG F++
Sbjct: 499 RVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLSGSGMFSK 558
Query: 62 EEAQEYVEMGAINGLF 77
+E E VE+G +NGLF
Sbjct: 559 QEIDEIVEIGYLNGLF 574
>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1703.07 PE=1 SV=1
Length = 615
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 67/84 (79%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG EL Y +PIS V ++ +GIGGV+SLLW +R+LP Y KFLEM L +TADHGP VSGA
Sbjct: 368 RGSELTYNNVPISKVFEEELGIGGVISLLWLRRRLPSYATKFLEMVLQLTADHGPCVSGA 427
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
NTI+ RAGKDL+SSLV+GLLTI
Sbjct: 428 MNTIITTRAGKDLISSLVAGLLTI 451
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60
+RV+++K +V +NFP+T LL+YAL VE +TTSKK NLILNVDG IAV FVDLLR+ G+FT
Sbjct: 505 LRVELVKGYVKKNFPSTKLLDYALAVENVTTSKKDNLILNVDGCIAVCFVDLLRNCGAFT 564
Query: 61 REEAQEYVEMGAINGLF 77
EEA EY+ +G +NG+F
Sbjct: 565 LEEANEYINLGILNGMF 581
>sp|Q3B3Q8|G6PI_PELLD Glucose-6-phosphate isomerase OS=Pelodictyon luteolum (strain DSM
273) GN=pgi PE=3 SV=2
Length = 551
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 16/70 (22%)
Query: 33 KKPNLILNVDGVIAVAFVD-LLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMPISD 91
++P LNVDG+ A VD +LR +FT + + G ++G Y G I+D
Sbjct: 99 RQPGYTLNVDGLDVPAEVDSVLRQMKAFTDK---------VVGGEWKG----YTGKRITD 145
Query: 92 VLKQNMGIGG 101
V+ N+GIGG
Sbjct: 146 VV--NIGIGG 153
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAING 75
++ A + ITT+ +P L+ + D V F + + H T E+A+++VE +G
Sbjct: 1153 IMELASHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEQAKDFVEDDTTHG 1209
>sp|Q55CZ1|GDT2_DICDI Probable serine/threonine-protein kinase gdt2 OS=Dictyostelium
discoideum GN=gdt2 PE=2 SV=1
Length = 1637
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 8 EFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEY 67
EF + NFP +P L I +K N+ L+ I +++++L GSFT +Q+
Sbjct: 78 EFSIDNFPGSPFLK-----ANIKITKGSNMTLDPLLSIHPSYINILCIEGSFT-AGSQQT 131
Query: 68 VEMGAI----NGLFRGQELLYAGMPISDV---------LKQNMGIGGVLSLLWFQRQLPP 114
+ +G I G F + + +S L + +GG +SL+ QR L
Sbjct: 132 LTLGGIIVLPGGNFHCNNCVLQFVDLSSTIIKIDPFGFLPGILSLGGSISLIGSQRIL-- 189
Query: 115 YVCKFLEMSLMVTAD 129
Y K +E +++ D
Sbjct: 190 YSAKPIEDNVLEVND 204
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAING 75
++ A+ + ITT+ +P L+ + D V F + + H T E A+++VE +G
Sbjct: 1161 IMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTTHG 1217
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAING 75
++ A+ + ITT+ +P L+ + D V F + + H T E A+++VE +G
Sbjct: 1161 IMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTTHG 1217
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAING 75
++ A+ + ITT+ +P L+ + D V F + + H T E A+++VE +G
Sbjct: 1161 IMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTTHG 1217
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3
PE=1 SV=1
Length = 1218
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAING 75
++ A+ + ITT+ +P L+ + D V F + + H T E A+++VE +G
Sbjct: 1162 IMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTTHG 1218
>sp|O67828|ATPB_AQUAE ATP synthase subunit beta OS=Aquifex aeolicus (strain VF5)
GN=atpD PE=3 SV=1
Length = 478
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 47 VAFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMPIS 90
V F+++ +H G E + MG +GL RGQE+ Y G PI
Sbjct: 51 VLFMEVAQHIG----EHRVRAIAMGPTDGLVRGQEVEYLGGPIK 90
>sp|O50292|ATPB_AQUPY ATP synthase subunit beta OS=Aquifex pyrophilus GN=atpD PE=3 SV=1
Length = 478
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 47 VAFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMPIS 90
V F+++ +H G E + MG +GL RGQE+ Y G PI
Sbjct: 51 VLFMEVAQHIG----EHRVRAIAMGPTDGLVRGQEVEYLGGPIK 90
>sp|C4L5V1|SEPF_EXISA Cell division protein SepF OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=sepF PE=3 SV=1
Length = 156
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 86 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 145
ISD LK+N + +++L ++ V FL S +V A G S HNTI+C
Sbjct: 78 AQDISDHLKENRAV--IVNLQRMSKEQSRQVVNFL--SGVVYALEGSMTSIGHNTILCTP 133
Query: 146 AGKDLVSSLVSGLLT 160
+L S +S L++
Sbjct: 134 NNVELTGS-ISNLIS 147
>sp|Q97BJ3|PELO_THEVO Protein pelota homolog OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=pelA PE=3
SV=1
Length = 340
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 39 LNVDGVIAVAFVDLLRH-SGSFTREEAQEYVEMGAINGL------FR---GQELL 83
++ D I AF+ LR SG + EE ++Y+EMGA++ L FR G+ELL
Sbjct: 247 ISRDNEIVSAFLSSLRRGSGIYGSEEIRKYLEMGALSDLIITDKKFRSETGRELL 301
>sp|P22478|ATPB_BACPE ATP synthase subunit beta OS=Bacillus pseudofirmus (strain OF4)
GN=atpD PE=3 SV=2
Length = 470
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 18 PLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 77
P +N AL+V ++ K ++V + VA H G +++ V MG+ +GL
Sbjct: 24 PEINNALKVVQVGADKNA---VDVTVTLEVAL-----HLG----DDSVRTVAMGSTDGLV 71
Query: 78 RGQELLYAGMPIS 90
RG E L G PIS
Sbjct: 72 RGTEALDTGAPIS 84
>sp|Q8F2J5|ATPB_LEPIN ATP synthase subunit beta OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=atpD
PE=3 SV=2
Length = 467
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 18 PLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 77
P + ALE+E + KK +I V H G +A + + + +GL
Sbjct: 24 PEIYNALEIETNVSGKKETIIAEVQ-----------THIGG----KAVRAIALSSTDGLI 68
Query: 78 RGQELLYAGMPIS 90
RGQE+ G PIS
Sbjct: 69 RGQEVSNTGKPIS 81
>sp|Q72SX9|ATPB_LEPIC ATP synthase subunit beta OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=atpD PE=3 SV=1
Length = 467
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 18 PLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 77
P + ALE+E + KK +I V H G +A + + + +GL
Sbjct: 24 PEIYNALEIETNVSGKKETIIAEVQ-----------THIGG----KAVRAIALSSTDGLI 68
Query: 78 RGQELLYAGMPIS 90
RGQE+ G PIS
Sbjct: 69 RGQEVSNTGKPIS 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,271,053
Number of Sequences: 539616
Number of extensions: 2202268
Number of successful extensions: 5761
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5726
Number of HSP's gapped (non-prelim): 44
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)