Query psy16952
Match_columns 161
No_of_seqs 128 out of 152
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 17:53:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifc_A Citrate synthase; oxalo 98.2 3.2E-07 1.1E-11 80.0 1.9 74 78-160 144-217 (385)
2 1vgp_A 373AA long hypothetical 98.2 4.7E-07 1.6E-11 78.6 2.0 74 78-160 136-209 (373)
3 1aj8_A Citrate synthase; hyper 98.2 4.7E-07 1.6E-11 78.6 1.9 66 94-160 147-212 (371)
4 1a59_A Citrate synthase; cold- 98.1 1E-06 3.4E-11 76.5 1.9 74 78-160 142-215 (378)
5 2ibp_A Citrate synthase; disul 98.0 1.8E-06 6.2E-11 76.0 1.8 66 94-160 178-243 (409)
6 2c6x_A Citrate synthase 1; tri 98.0 2.2E-06 7.4E-11 74.4 1.8 74 78-160 133-206 (363)
7 1aj8_A Citrate synthase; hyper 97.9 5.6E-06 1.9E-10 71.9 3.8 81 2-87 266-359 (371)
8 2c6x_A Citrate synthase 1; tri 97.8 3.9E-06 1.3E-10 72.7 1.3 59 2-60 260-324 (363)
9 1iom_A Citrate synthase; open 97.8 5.8E-06 2E-10 71.9 1.4 66 94-160 148-213 (377)
10 2ifc_A Citrate synthase; oxalo 97.7 3.2E-06 1.1E-10 73.7 -0.7 53 2-54 272-330 (385)
11 3tqg_A 2-methylcitrate synthas 97.7 7.4E-06 2.5E-10 71.5 1.5 64 96-160 152-215 (375)
12 2p2w_A Citrate synthase; trans 97.7 9.2E-06 3.1E-10 70.4 2.1 60 2-61 259-319 (367)
13 1csh_A Citrate synthase; lyase 97.7 2E-05 6.9E-10 69.9 4.1 50 2-51 327-382 (435)
14 1vgm_A 378AA long hypothetical 97.7 9.7E-06 3.3E-10 70.5 1.9 74 78-160 140-213 (378)
15 1iom_A Citrate synthase; open 97.7 8.5E-06 2.9E-10 70.9 1.2 60 2-61 267-331 (377)
16 1o7x_A Citrate synthase; lyase 97.7 8.4E-06 2.9E-10 70.9 1.0 66 94-160 147-212 (377)
17 1o7x_A Citrate synthase; lyase 97.7 8.8E-06 3E-10 70.8 1.0 60 2-61 267-332 (377)
18 1a59_A Citrate synthase; cold- 97.6 8.6E-06 2.9E-10 70.7 0.7 58 2-60 278-338 (378)
19 1vgp_A 373AA long hypothetical 97.6 1.6E-05 5.3E-10 69.0 1.6 82 2-87 263-362 (373)
20 2ibp_A Citrate synthase; disul 97.6 1.5E-05 5.2E-10 70.2 1.6 60 2-61 298-365 (409)
21 3hwk_A Methylcitrate synthase; 97.4 2.7E-05 9.4E-10 69.0 1.1 58 2-60 311-371 (414)
22 1vgm_A 378AA long hypothetical 97.4 2.2E-05 7.6E-10 68.3 0.3 60 2-61 268-333 (378)
23 3tqg_A 2-methylcitrate synthas 97.4 3.1E-05 1.1E-09 67.6 1.0 58 2-60 269-329 (375)
24 3hwk_A Methylcitrate synthase; 97.4 4.6E-05 1.6E-09 67.5 1.6 65 95-160 193-257 (414)
25 3msu_A Citrate synthase; helix 97.3 5.8E-05 2E-09 67.1 1.6 58 2-59 319-385 (427)
26 3o8j_A 2-methylcitrate synthas 97.3 3.5E-05 1.2E-09 68.0 0.1 58 2-60 298-358 (404)
27 3o8j_A 2-methylcitrate synthas 97.2 8.1E-05 2.8E-09 65.7 1.7 65 95-160 180-244 (404)
28 3l96_A Citrate synthase; quate 97.2 3E-05 1E-09 68.9 -2.0 59 2-60 314-380 (426)
29 2p2w_A Citrate synthase; trans 96.8 0.00022 7.7E-09 61.8 0.5 64 94-160 142-205 (367)
30 1csh_A Citrate synthase; lyase 96.6 0.0006 2.1E-08 60.4 1.4 63 95-160 203-266 (435)
31 2h12_A Citrate synthase; acido 96.3 0.00095 3.3E-08 59.3 1.1 58 2-59 322-388 (436)
32 3msu_A Citrate synthase; helix 96.2 0.0014 4.7E-08 58.4 1.3 65 95-160 195-263 (427)
33 3l96_A Citrate synthase; quate 95.9 0.0021 7.1E-08 57.1 1.4 66 94-160 188-258 (426)
34 2h12_A Citrate synthase; acido 95.6 0.0037 1.3E-07 55.5 1.6 65 95-160 197-266 (436)
35 3pct_A Class C acid phosphatas 47.7 15 0.00052 30.1 3.6 42 31-72 55-99 (260)
36 1nkz_B Light-harvesting protei 47.3 11 0.00038 23.9 2.1 12 59-70 3-14 (41)
37 3ocu_A Lipoprotein E; hydrolas 44.5 16 0.00053 30.1 3.1 43 30-72 54-99 (262)
38 1lgh_B LH II, B800/850, light 42.5 14 0.00048 23.9 2.0 12 59-70 8-19 (45)
39 2cqj_A BRMS2, U3 small nucleol 41.5 18 0.0006 24.2 2.5 35 52-90 13-50 (71)
40 1xkp_B Chaperone protein SYCN; 41.0 8.4 0.00029 29.6 0.9 41 105-145 47-95 (124)
41 2p1h_A APAF-1, apoptotic prote 37.0 20 0.00069 24.1 2.3 22 49-70 27-48 (94)
42 2z69_A DNR protein; beta barre 36.9 21 0.00071 23.8 2.3 44 49-92 10-56 (154)
43 4e9m_A Nucleotide-binding olig 35.4 24 0.00081 27.7 2.7 21 48-69 45-65 (144)
44 3lrd_A Major ampullate spidroi 35.3 29 0.00098 26.9 3.2 30 42-72 17-46 (137)
45 1q08_A Zn(II)-responsive regul 34.5 35 0.0012 22.7 3.2 23 47-70 6-28 (99)
46 2ktl_A Tyrosyl-tRNA synthetase 33.3 26 0.00091 27.5 2.7 25 47-71 50-75 (164)
47 2nz7_A NOD1, caspase recruitme 33.1 32 0.0011 24.5 2.9 21 49-70 32-52 (98)
48 3e97_A Transcriptional regulat 32.9 11 0.00038 27.4 0.4 45 49-93 4-51 (231)
49 1fi6_A EH domain protein REPS1 31.3 34 0.0012 22.3 2.6 32 42-74 23-55 (92)
50 2pqq_A Putative transcriptiona 30.6 22 0.00075 23.5 1.6 44 50-93 4-50 (149)
51 3ocp_A PRKG1 protein; serine/t 29.8 35 0.0012 22.6 2.6 46 48-93 20-68 (139)
52 1vp6_A CNBD, cyclic-nucleotide 29.7 19 0.00066 23.7 1.2 44 50-93 10-56 (138)
53 2cso_A Pleckstrin; DEP domain, 29.6 41 0.0014 25.3 3.1 35 42-76 46-85 (127)
54 3oi8_A Uncharacterized protein 29.3 24 0.00083 24.6 1.7 37 59-95 3-46 (156)
55 1qjt_A EH1, epidermal growth f 29.2 40 0.0014 22.6 2.8 33 42-75 25-58 (99)
56 2kn6_A Apoptosis-associated sp 29.2 22 0.00074 28.6 1.6 26 39-70 147-172 (215)
57 4i16_A Caspase recruitment dom 29.1 35 0.0012 24.6 2.6 22 49-70 25-46 (93)
58 2wvv_A Alpha-L-fucosidase; alp 28.8 15 0.00052 32.1 0.7 28 30-57 306-337 (450)
59 3nnb_A Alginate lyase; structu 28.6 38 0.0013 29.5 3.1 65 3-67 128-195 (382)
60 3gza_A Putative alpha-L-fucosi 28.4 17 0.0006 32.1 1.0 28 30-57 306-337 (443)
61 2d93_A RAP guanine nucleotide 28.4 22 0.00075 23.6 1.3 46 48-93 13-62 (134)
62 1b0n_B Protein (SINI protein); 27.4 56 0.0019 21.6 3.2 22 47-69 16-37 (57)
63 1c07_A Protein (epidermal grow 27.2 52 0.0018 21.5 3.0 32 42-74 24-56 (95)
64 3gyd_A CNMP-BD protein, cyclic 26.9 31 0.0011 24.8 1.9 44 49-92 37-83 (187)
65 3crd_A Raidd; caspase recruitm 26.5 31 0.0011 23.8 1.8 22 49-70 26-47 (100)
66 3lhh_A CBS domain protein; str 26.3 15 0.00051 26.2 0.1 39 56-94 4-49 (172)
67 2xf7_A GP23.1; viral protein; 25.7 36 0.0012 22.5 1.9 16 55-70 29-44 (51)
68 3dn7_A Cyclic nucleotide bindi 25.5 37 0.0013 23.8 2.1 45 49-93 8-52 (194)
69 3ff5_A PEX14P, peroxisomal bio 25.1 54 0.0018 21.7 2.7 19 50-69 34-52 (54)
70 2pmy_A RAS and EF-hand domain- 24.3 74 0.0025 20.1 3.3 30 42-72 41-71 (91)
71 1uhw_A Pleckstrin; three-helix 23.1 64 0.0022 23.6 3.1 35 42-76 36-75 (109)
72 1nho_A Probable thioredoxin; b 23.0 39 0.0013 20.2 1.6 33 27-69 49-81 (85)
73 3dv8_A Transcriptional regulat 22.7 15 0.00053 26.2 -0.3 43 51-93 3-48 (220)
74 1fo5_A Thioredoxin; disulfide 22.5 40 0.0014 20.2 1.6 31 29-69 52-82 (85)
75 2zxd_A Alpha-L-fucosidase, put 21.6 22 0.00074 31.4 0.3 28 30-57 314-345 (455)
76 4f8a_A Potassium voltage-gated 21.5 30 0.001 23.3 0.9 44 50-93 26-72 (160)
77 3eyp_A Putative alpha-L-fucosi 21.3 29 0.00099 30.7 1.0 28 30-57 285-316 (469)
78 1zyb_A Transcription regulator 21.3 34 0.0011 25.1 1.2 46 48-93 15-65 (232)
79 2kld_A Polycystin-2; PC2, PKD2 20.8 78 0.0027 21.9 3.0 33 42-75 60-93 (123)
80 3bsu_A Ribonuclease H1, RNAse 20.8 43 0.0015 21.4 1.5 15 57-71 37-51 (53)
No 1
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=98.22 E-value=3.2e-07 Score=79.98 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=66.2
Q ss_pred CcccccccCcchhhhhhcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhh
Q psy16952 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSG 157 (161)
Q Consensus 78 RG~El~YaG~pIS~V~~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sG 157 (161)
+|++++| | ..+.+.++.+.++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|
T Consensus 144 ~g~~~i~---p-----~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~S-t~aarv~aSt~~d~~savaag 214 (385)
T 2ifc_A 144 MNMPAEL---P-----KPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPAS-TTAGLVAVSTLSDMYSGITAA 214 (385)
T ss_dssp TTCCCCC---C-----CCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCCC---C-----CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHH-HHHHHHHHhcCCcHHHHHHHH
Confidence 5777654 2 467899999999999999889999999999999999999887 899999999999999999999
Q ss_pred ccc
Q psy16952 158 LLT 160 (161)
Q Consensus 158 llt 160 (161)
+.+
T Consensus 215 i~a 217 (385)
T 2ifc_A 215 LAA 217 (385)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 2
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=98.17 E-value=4.7e-07 Score=78.56 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=65.6
Q ss_pred CcccccccCcchhhhhhcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhh
Q psy16952 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSG 157 (161)
Q Consensus 78 RG~El~YaG~pIS~V~~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sG 157 (161)
+|+++.| | ..+++.++.+-++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|
T Consensus 136 ~g~~~i~---p-----~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~S-T~aaRv~aSt~ad~~savaag 206 (373)
T 1vgp_A 136 KGLDIIE---P-----DPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNAS-TFASLVVASTFSDLYSSIVAG 206 (373)
T ss_dssp TTCCCCC---C-----CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCCC---C-----CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchH-HHHHHHHHhcCccHHHHHHHH
Confidence 4777665 3 356789999999999999889999999999999999999877 899999999999999999999
Q ss_pred ccc
Q psy16952 158 LLT 160 (161)
Q Consensus 158 llt 160 (161)
+.+
T Consensus 207 i~a 209 (373)
T 1vgp_A 207 ISA 209 (373)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 3
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=98.17 E-value=4.7e-07 Score=78.61 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=61.1
Q ss_pred hcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
..+++.++.+.++|+.++.++...+.+++++++.||||+..| +|.+.|++.+|.|+.+|+++|+.+
T Consensus 147 ~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~S-t~aarv~aSt~~d~~savaagi~a 212 (371)
T 1aj8_A 147 KEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINAS-TLAVMTVGSTLSDYYSAILAGIGA 212 (371)
T ss_dssp CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChh-HHHHHHHhhcCCcHHHHHHHHHHH
Confidence 357889999999999999889999999999999999999887 899999999999999999999864
No 4
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=98.07 E-value=1e-06 Score=76.50 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=65.7
Q ss_pred CcccccccCcchhhhhhcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhh
Q psy16952 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSG 157 (161)
Q Consensus 78 RG~El~YaG~pIS~V~~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sG 157 (161)
+|++++| | ..+.+.++.+-++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|
T Consensus 142 ~g~~~i~---p-----~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~S-t~aarv~aSt~~d~~savaag 212 (378)
T 1a59_A 142 RGEELIE---P-----REDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNAS-TFTARVITSTLADLHSAVTGA 212 (378)
T ss_dssp TTCCCCC---C-----CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCCC---C-----CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCch-HHHHHHHhhcCCcHHHHHHHH
Confidence 4777665 3 356789999999999998889999999999999999999877 899999999999999999999
Q ss_pred ccc
Q psy16952 158 LLT 160 (161)
Q Consensus 158 llt 160 (161)
+.+
T Consensus 213 i~a 215 (378)
T 1a59_A 213 IGA 215 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 5
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=97.98 E-value=1.8e-06 Score=76.00 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=60.7
Q ss_pred hcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
..+++.++.+.++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|+.+
T Consensus 178 ~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naS-T~aaRv~aSt~ad~~savaagi~a 243 (409)
T 2ibp_A 178 RDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPAS-TFAAHVVASTLSDLYSSVAAAIAA 243 (409)
T ss_dssp CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHhhcCCcHHHHHHHHHHH
Confidence 467889999999999998889999999999999999999877 799999999999999999999864
No 6
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=97.95 E-value=2.2e-06 Score=74.38 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=65.1
Q ss_pred CcccccccCcchhhhhhcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhh
Q psy16952 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSG 157 (161)
Q Consensus 78 RG~El~YaG~pIS~V~~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sG 157 (161)
+|+++.| ...+.+.++.+-++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|
T Consensus 133 ~g~~~i~--------p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~S-t~aarv~aSt~~d~~savaag 203 (363)
T 2c6x_A 133 RGEQAIA--------PSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNAS-TFSARVTLSTESDLVSAVTAA 203 (363)
T ss_dssp TTCCCCC--------CCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCcC--------CCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHH-HHHHHHHHhcCccHHHHHHHH
Confidence 4676554 2357899999999999999889999999999999999999876 889999999999999999999
Q ss_pred ccc
Q psy16952 158 LLT 160 (161)
Q Consensus 158 llt 160 (161)
+.+
T Consensus 204 i~a 206 (363)
T 2c6x_A 204 LGT 206 (363)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 7
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=97.92 E-value=5.6e-06 Score=71.87 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=64.5
Q ss_pred chhhHHHHHHhhCCCChhhhhhhhhhhhhccCC--CceeeeccchhhHHHHHhhhhcCCCCHH-----------HHHHHH
Q psy16952 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKK--PNLILNVDGVIAVAFVDLLRHSGSFTRE-----------EAQEYV 68 (161)
Q Consensus 2 RV~~lk~~~~~~fp~t~~ldyAl~VE~iTt~Kk--~NLILNVDG~Igv~fvDllr~~G~Ft~e-----------Ea~e~i 68 (161)
|+.+||+++++. +..|++++|.+||++.++++ .||..|||+..|+++.+|=-...+||.= .+.|..
T Consensus 266 Ra~~l~~~~~~~-~~~~~~~~a~~le~~~~~~~~~k~l~pNVD~~sg~i~~~lGip~~~~t~lF~i~R~~Gw~AH~~Eq~ 344 (371)
T 1aj8_A 266 RARIFKKYASKL-GDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYV 344 (371)
T ss_dssp HHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHcCCCHHhhhhHHHHhccccHHHHHHHHH
Confidence 899999999998 88999999999999988754 7999999999999999986555555431 444555
Q ss_pred HhhcccCccCcccccccCc
Q psy16952 69 EMGAINGLFRGQELLYAGM 87 (161)
Q Consensus 69 ~~G~lNglFRG~El~YaG~ 87 (161)
+. |.++| --..|-|-
T Consensus 345 ~~---~~i~R-P~~~Y~G~ 359 (371)
T 1aj8_A 345 SH---NRIIR-PRLQYVGE 359 (371)
T ss_dssp TT---CCCCC-CEEEECSC
T ss_pred hc---CCccC-chhhccCC
Confidence 44 57888 44678883
No 8
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=97.83 E-value=3.9e-06 Score=72.74 Aligned_cols=59 Identities=20% Similarity=0.120 Sum_probs=52.0
Q ss_pred chhhHHHHHHhhCCCChhhhhhhhhhhhhccC------CCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSK------KPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~~fp~t~~ldyAl~VE~iTt~K------k~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+.+||+++++.+++.|++++|.+||++..++ +.||..|||+..|+++.+|--...+||
T Consensus 260 Ra~~l~~~a~~~~~~~~~~~~a~~le~~~~~~~g~yf~~k~l~pNVD~~sg~i~~~lG~p~~~~t 324 (363)
T 2c6x_A 260 RAEALRQKAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFT 324 (363)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHSCSSCCCBCTHHHHHHHHHHTTCCGGGHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCCCcChHHHHHHHHHHhCCChhhhh
Confidence 89999999999999999999999999998775 269999999999999988865555554
No 9
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=97.76 E-value=5.8e-06 Score=71.89 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=59.8
Q ss_pred hcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
..+.+.++.+-++|+.++.++...+.+++++++.||||+..|. +.+-|++.+|.|+.+|+++|+.+
T Consensus 148 ~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aaRv~aSt~~d~~savaagi~a 213 (377)
T 1iom_A 148 REDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNAST-FTAIAAFSTETDLYSAITAAVAS 213 (377)
T ss_dssp CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchH-HHHHHHhhcCCcHHHHHHHHHHH
Confidence 3568899999999999988899999999999999999997665 88899999999999999999864
No 10
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=97.73 E-value=3.2e-06 Score=73.67 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=47.7
Q ss_pred chhhHHHHHHhh----CCCChhhhhhhhhhhhhcc--CCCceeeeccchhhHHHHHhhh
Q psy16952 2 RVKIIKEFVLQN----FPTTPLLNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLR 54 (161)
Q Consensus 2 RV~~lk~~~~~~----fp~t~~ldyAl~VE~iTt~--Kk~NLILNVDG~Igv~fvDllr 54 (161)
|+.+||+++++. +++.|+++.|.+||++..+ |+.||..|||+..|+++.+|=-
T Consensus 272 Ra~~L~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~~~k~l~pNVD~~sg~v~~~lGi 330 (385)
T 2ifc_A 272 RAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGF 330 (385)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHGGGTCCBCTTTTHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHcCC
Confidence 899999999988 6789999999999999987 4568999999999999998843
No 11
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=97.73 E-value=7.4e-06 Score=71.50 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=59.6
Q ss_pred ccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 96 NMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 96 ~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
+.+.++.+-++|+.++.++...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|+.+
T Consensus 152 ~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~S-t~tarvvaSt~ad~ysavaagi~a 215 (375)
T 3tqg_A 152 DLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNAS-TFAARVCSATLSDIYSAVTAAIAT 215 (375)
T ss_dssp CSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHH-HHHHHHHHccCCCHHHHHHHHHHh
Confidence 4888999999999998899999999999999999999887 899999999999999999999864
No 12
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=97.73 E-value=9.2e-06 Score=70.44 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=53.1
Q ss_pred chhhHHHHHHhhCCCChhhhhhhhhhhhhccCC-CceeeeccchhhHHHHHhhhhcCCCCH
Q psy16952 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKK-PNLILNVDGVIAVAFVDLLRHSGSFTR 61 (161)
Q Consensus 2 RV~~lk~~~~~~fp~t~~ldyAl~VE~iTt~Kk-~NLILNVDG~Igv~fvDllr~~G~Ft~ 61 (161)
|+.+||+++++.++..|+++.|.+||++..+++ .||..|||+..|+++.+|=-...+||.
T Consensus 259 Ra~~l~~~a~~~~~~~~~~~~a~~le~~~~~~~~k~l~pNVDf~sg~v~~~lGip~~~~t~ 319 (367)
T 2p2w_A 259 RAVFLKRVLQEHFPDSKLFRIASKLEEYIVSNKIKNIYPNVDLYSSVLFEELGFPRNMFTA 319 (367)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTGGGCCBCHHHHHHHHHHHTTCCGGGHHH
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhCCChhhhhh
Confidence 899999999998778899999999999987754 799999999999999998777776664
No 13
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=97.72 E-value=2e-05 Score=69.87 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=45.8
Q ss_pred chhhHHHHHHhhCCCChhhhhhhhhhhhhcc------CCCceeeeccchhhHHHHH
Q psy16952 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTS------KKPNLILNVDGVIAVAFVD 51 (161)
Q Consensus 2 RV~~lk~~~~~~fp~t~~ldyAl~VE~iTt~------Kk~NLILNVDG~Igv~fvD 51 (161)
|+.+|+++++++++..|+++.|.+||++..+ |+.||..|||+..|+++.+
T Consensus 327 Ra~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~ 382 (435)
T 1csh_A 327 RYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQY 382 (435)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Confidence 8999999999999999999999999999854 5579999999999999875
No 14
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=97.71 E-value=9.7e-06 Score=70.55 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=64.0
Q ss_pred CcccccccCcchhhhhhcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhh
Q psy16952 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSG 157 (161)
Q Consensus 78 RG~El~YaG~pIS~V~~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sG 157 (161)
+|+++.| | ..+.+.++.+-++|+.+..++...+.+++++++.||||+..| ++.+-|++.+|-|+.+|+++|
T Consensus 140 ~g~~~i~---p-----~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~S-t~aaRv~aSt~~d~~savaag 210 (378)
T 1vgm_A 140 EGLKPKI---P-----EPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPAS-TTAALVASSTLSDMYSCIVAA 210 (378)
T ss_dssp TTCCCCC---C-----CCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCCC---C-----CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchH-HHHHHHHHhcCCcHHHHHHHH
Confidence 4666554 2 356889999999999998889999999999999999999765 688999999999999999999
Q ss_pred ccc
Q psy16952 158 LLT 160 (161)
Q Consensus 158 llt 160 (161)
+.+
T Consensus 211 i~a 213 (378)
T 1vgm_A 211 LAA 213 (378)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 15
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=97.69 E-value=8.5e-06 Score=70.87 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=52.3
Q ss_pred chhhHHHHHHhh---CCCChhhhhhhhhhhhhcc-CC-CceeeeccchhhHHHHHhhhhcCCCCH
Q psy16952 2 RVKIIKEFVLQN---FPTTPLLNYALEVEKITTS-KK-PNLILNVDGVIAVAFVDLLRHSGSFTR 61 (161)
Q Consensus 2 RV~~lk~~~~~~---fp~t~~ldyAl~VE~iTt~-Kk-~NLILNVDG~Igv~fvDllr~~G~Ft~ 61 (161)
|+.+||+++++. ++..|++++|.+||++..+ ++ .||..|||+..|+++.+|--...+||.
T Consensus 267 Ra~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~k~l~pNVD~~sg~i~~~lG~p~~~~t~ 331 (377)
T 1iom_A 267 RAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTP 331 (377)
T ss_dssp THHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHTTCCGGGHHH
T ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHHHHcCCCHHhhhh
Confidence 899999999987 5889999999999999987 43 689999999999999998766666664
No 16
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=97.68 E-value=8.4e-06 Score=70.90 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=60.1
Q ss_pred hcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
..+.+.++.+-++|+.+..++...+.+++++++.||||+..| ++.+-|++.+|.|+.+|+++|+.+
T Consensus 147 ~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~S-t~aaRv~aSt~ad~~savaagi~a 212 (377)
T 1o7x_A 147 EPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPAS-TTAALVAASTLSDMYSSLTAALAA 212 (377)
T ss_dssp CCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHH-HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChH-HHHHHHHHhcCCcHHHHHHHHHHh
Confidence 356889999999999999889999999999999999999876 689999999999999999999864
No 17
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=97.67 E-value=8.8e-06 Score=70.77 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=52.3
Q ss_pred chhhHHHHHHhh---CCC-Chhhhhhhhhhhhhcc--CCCceeeeccchhhHHHHHhhhhcCCCCH
Q psy16952 2 RVKIIKEFVLQN---FPT-TPLLNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTR 61 (161)
Q Consensus 2 RV~~lk~~~~~~---fp~-t~~ldyAl~VE~iTt~--Kk~NLILNVDG~Igv~fvDllr~~G~Ft~ 61 (161)
|+.+||+++++. ++. .|++++|.+||++..+ |+.||..|||+..|+++.+|--...+||.
T Consensus 267 Ra~~l~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~~~k~l~pNVD~~sg~v~~~lG~p~~~~t~ 332 (377)
T 1o7x_A 267 RAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYMFTA 332 (377)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHHHTCCGGGHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhCCChhhhhh
Confidence 899999999988 566 8999999999999987 34589999999999999998777766664
No 18
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=97.65 E-value=8.6e-06 Score=70.66 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=50.1
Q ss_pred chhhHHHHHHhhC---CCChhhhhhhhhhhhhccCCCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~~f---p~t~~ldyAl~VE~iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+.+||+++++.+ +..|++++|.+||++..++ .||..|||+..|+++.+|--...+||
T Consensus 278 Ra~~l~~~a~~~~~~~~~~~~~~~a~~le~~~~~~-k~l~pNVD~~sg~i~~~lGip~~~~t 338 (378)
T 1a59_A 278 RVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEA-KQIKPNLDYPAGPTYNLMGFDTEMFT 338 (378)
T ss_dssp THHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-HCCCBCTHHHHHHHHHHTTCCGGGHH
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCCChHHHHHHHHHHhCCChhhcc
Confidence 8999999999885 8899999999999998776 68999999999999988865544443
No 19
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=97.60 E-value=1.6e-05 Score=69.05 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=63.4
Q ss_pred chhhHHHHHHhhC---CCC--hhhhhhhhhhhhhccCC--CceeeeccchhhHHHHHhhhhcCCCCHH-----------H
Q psy16952 2 RVKIIKEFVLQNF---PTT--PLLNYALEVEKITTSKK--PNLILNVDGVIAVAFVDLLRHSGSFTRE-----------E 63 (161)
Q Consensus 2 RV~~lk~~~~~~f---p~t--~~ldyAl~VE~iTt~Kk--~NLILNVDG~Igv~fvDllr~~G~Ft~e-----------E 63 (161)
|+.+||+++++.+ +.. |++++|.+||++.++++ .||..|||+..|+++.+|--...+||.= .
T Consensus 263 Ra~~L~~~~~~l~~~~~~~~~~~~~~a~~le~~~~~~~~~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH 342 (373)
T 1vgp_A 263 RARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGIKYLGPKGIYPNVDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAH 342 (373)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHGGGTCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCHHhhhhhHHhhccccHHHH
Confidence 8999999999885 777 99999999999987753 7999999999999999986555555431 3
Q ss_pred HHHHHHhhcccCccCcccccccCc
Q psy16952 64 AQEYVEMGAINGLFRGQELLYAGM 87 (161)
Q Consensus 64 a~e~i~~G~lNglFRG~El~YaG~ 87 (161)
+.|..+ .|.++| --..|-|-
T Consensus 343 ~~Eq~~---~~~i~R-P~~~Y~G~ 362 (373)
T 1vgp_A 343 IMEYIK---DNKIIR-PKAYYKGE 362 (373)
T ss_dssp HHHHGG---GCCCCC-CCCCCCSC
T ss_pred HHHHHh---cCCCcC-ccccccCC
Confidence 444444 357788 34678883
No 20
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=97.60 E-value=1.5e-05 Score=70.15 Aligned_cols=60 Identities=30% Similarity=0.256 Sum_probs=50.9
Q ss_pred chhhHHHHHHhhC---CCC-hhhhhhhhhhhhhccC----CCceeeeccchhhHHHHHhhhhcCCCCH
Q psy16952 2 RVKIIKEFVLQNF---PTT-PLLNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTR 61 (161)
Q Consensus 2 RV~~lk~~~~~~f---p~t-~~ldyAl~VE~iTt~K----k~NLILNVDG~Igv~fvDllr~~G~Ft~ 61 (161)
|+.+||+++++.+ +.. |++++|.+||++.++. +.||..|||+..|+++.+|--...+||.
T Consensus 298 Ra~~L~~~a~~l~~~~~~~g~~~~~a~~le~~~l~~~~~~~k~l~pNVDf~sg~i~~~lGip~~~~t~ 365 (409)
T 2ibp_A 298 RAKIFKEFSRDYVAKFGDPQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTP 365 (409)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCHHHHHTTCCBCGGGTHHHHHHHHTCCGGGHHH
T ss_pred chHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccchhhhhcCCCCChHHHHHHHHHHhCCCHHhhhh
Confidence 8999999999884 666 9999999999998433 3689999999999999998766666654
No 21
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=97.45 E-value=2.7e-05 Score=68.95 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=50.8
Q ss_pred chhhHHHHHHh---hCCCChhhhhhhhhhhhhccCCCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQ---NFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~---~fp~t~~ldyAl~VE~iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+++|++++++ +++..|++++|.++|++..++ .||..|||+..|+++.+|--...+||
T Consensus 311 Ra~~L~~~a~~l~~~~g~~~~~~~a~~le~~~~~~-k~l~pNVDf~sg~i~~~lGip~~~~t 371 (414)
T 3hwk_A 311 RVPTMKRALERVGTVRDGQRWLDIYQVLAAEMASA-TGILPNLDFPTGPAYYLMGFDIASFT 371 (414)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HCCCBCTHHHHHHHHHHHTCCGGGHH
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHhCCCHHHHH
Confidence 89999999985 688899999999999999876 68999999999999999866555555
No 22
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=97.43 E-value=2.2e-05 Score=68.29 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=51.2
Q ss_pred chhhHHHHHHhhC---C-CChhhhhhhhhhhhhcc--CCCceeeeccchhhHHHHHhhhhcCCCCH
Q psy16952 2 RVKIIKEFVLQNF---P-TTPLLNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTR 61 (161)
Q Consensus 2 RV~~lk~~~~~~f---p-~t~~ldyAl~VE~iTt~--Kk~NLILNVDG~Igv~fvDllr~~G~Ft~ 61 (161)
|+.+||+++++.+ + +.|+++.|.+||++..+ |+.||..|||+..|+++.+|--...+||.
T Consensus 268 Ra~~L~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~~~k~l~pNVDf~sg~i~~~lGip~~~~t~ 333 (378)
T 1vgm_A 268 RAKIFKTLAKSFAEKNENVKKYYEIAERIEKLGVDTFGSKHIYPNTDFYSGIVFYALGFPIYMFTS 333 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCBCTTTTHHHHHHHTTCCGGGHHH
T ss_pred chHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHhCCCHHhhhH
Confidence 8899999999874 5 67899999999999887 34589999999999999998766666664
No 23
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=97.41 E-value=3.1e-05 Score=67.57 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=49.0
Q ss_pred chhhHHHHHHhh---CCCChhhhhhhhhhhhhccCCCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQN---FPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~~---fp~t~~ldyAl~VE~iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+++|++++++. ++..|++++|.+||++..++ .||..|||+..|+++.+|=-...+||
T Consensus 269 Ra~~l~~~a~~l~~~~~~~~~~~~a~~le~~~~~~-k~l~pNVDf~sg~i~~~lGip~~~~t 329 (375)
T 3tqg_A 269 RNAIIKSWAQKLAPNAADGYLFDISDAIENTMQDE-KKLFPNLDFYSATAYHFLNIPTKLFT 329 (375)
T ss_dssp HHHHHHHHHHHHTTTSTTTHHHHHHHHHHHHHHHH-HCCCBCHHHHHHHHHHHTTCCGGGHH
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHcCCCHHHHH
Confidence 889999999986 56889999999999998765 58999999999999998844444443
No 24
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=97.37 E-value=4.6e-05 Score=67.53 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred cccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 95 QNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 95 ~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.+.+.++.+-++|+.++..+...+.+++++++.||||...| +|.+-|++.+|.|+.+|+++|+.+
T Consensus 193 ~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaS-T~taRvvaSt~ad~ysavaagi~a 257 (414)
T 3hwk_A 193 SGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNAS-TFAARVVTSTQSDIYSAVTGAIGA 257 (414)
T ss_dssp TTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 46788899999999998889999999999999999999887 699999999999999999999864
No 25
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=97.32 E-value=5.8e-05 Score=67.14 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=47.4
Q ss_pred chhhHHHHHHhh-----CCCChhhhhhhhhhhhhcc----CCCceeeeccchhhHHHHHhhhhcCCC
Q psy16952 2 RVKIIKEFVLQN-----FPTTPLLNYALEVEKITTS----KKPNLILNVDGVIAVAFVDLLRHSGSF 59 (161)
Q Consensus 2 RV~~lk~~~~~~-----fp~t~~ldyAl~VE~iTt~----Kk~NLILNVDG~Igv~fvDllr~~G~F 59 (161)
|.++||+++++. +|+.|+++.|.++|++..+ |+.||..|||+..|+++.+|=-...+|
T Consensus 319 Ra~~Lk~~a~~l~~~~g~~~~~~~~la~~le~~a~~d~~~~~k~l~pNVDfysg~i~~~lGip~~~f 385 (427)
T 3msu_A 319 RATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIERKLFSNVDFYSGIILKAMGIPEDMF 385 (427)
T ss_dssp HHHHHHHHTHHHHHHGGGCSSHHHHHHHHHHHHHC------CCCCCBCHHHHHHHHHHHTTCCGGGH
T ss_pred cHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhcccccccCCCCChHHHHHHHHHHcCCCcccc
Confidence 889999999764 7789999999999999987 467899999999999998874433333
No 26
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=97.31 E-value=3.5e-05 Score=68.02 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=49.3
Q ss_pred chhhHHHHHHhhCC---CChhhhhhhhhhhhhccCCCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQNFP---TTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~~fp---~t~~ldyAl~VE~iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+++|++++++.++ ..|++++|.+||++... +.||..|||+..|+++.+|--...+||
T Consensus 298 Ra~~l~~~a~~l~~~~g~~~~~~~a~~le~~~~~-~k~l~pNVDf~sg~i~~~lGip~~~~t 358 (404)
T 3o8j_A 298 RHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWE-TKKMFPNLDWFSAVSYNMMGVPTEMFT 358 (404)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HHCCCBCTTTHHHHHHHHTTCCGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-hcCCCcChHHHHHHHHHHcCCChHhHH
Confidence 88999999998854 68999999999999865 458999999999999998865555554
No 27
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=97.24 E-value=8.1e-05 Score=65.68 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=59.2
Q ss_pred cccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 95 QNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 95 ~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.+.+.+.-+-++|+.+...+...+.+++++++.||||+..| +|.+-|++.+|.|+.+|+++|+.+
T Consensus 180 ~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~S-t~taRvvaSt~ad~ysavaagi~a 244 (404)
T 3o8j_A 180 DDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNAS-TFTSRVIAGTGSDVYSAIIGAIGA 244 (404)
T ss_dssp CCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 46788888999999888889999999999999999999887 799999999999999999999864
No 28
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=97.16 E-value=3e-05 Score=68.89 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=49.8
Q ss_pred chhhHHHHHHhhCC----CChhhhhhhhhhhhhcc----CCCceeeeccchhhHHHHHhhhhcCCCC
Q psy16952 2 RVKIIKEFVLQNFP----TTPLLNYALEVEKITTS----KKPNLILNVDGVIAVAFVDLLRHSGSFT 60 (161)
Q Consensus 2 RV~~lk~~~~~~fp----~t~~ldyAl~VE~iTt~----Kk~NLILNVDG~Igv~fvDllr~~G~Ft 60 (161)
|+++||+++++.++ ..|+++.|.++|++..+ |+.||..|||+..|+++.+|--...+||
T Consensus 314 Ra~~l~~~a~~l~~~~g~~~~~~~~a~~le~~~~~~~~~~~k~l~pNVDfysg~i~~~lGip~~~ft 380 (426)
T 3l96_A 314 RATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFT 380 (426)
T ss_dssp THHHHHHHHHHHHHHTCSCCSSTTHHHHHHHHHHHCHHHHHHTCCBCHHHHHHHHHHHTTCCTHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccccCCCCchHHHHHHHHHHcCCCcccch
Confidence 89999999987543 78999999999999987 3568999999999999988866655555
No 29
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=96.81 E-value=0.00022 Score=61.78 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=55.5
Q ss_pred hcccCcchhhhhhhhhccCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.++++.++-+-..|+.+. +...+.+++++++.||||...|. +.+-|++.+|-|+.+|+++|+.+
T Consensus 142 ~~~l~~a~nfl~ml~~~~--~~~~~~ld~~LvL~ADHg~NaST-ftaRvvaSt~ad~ysavaagi~a 205 (367)
T 2p2w_A 142 RKDLSHVENFYYMMFGER--NEKIRLLESAFILLMEQDINAST-FAALVIASTLSDLYSCIVGALGA 205 (367)
T ss_dssp CTTSCHHHHHHHHHHSCC--CTTHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCC--hHHHHHHHHHHhHhccCCCchHH-HHHHHHHhcCccHHHHHHHHHHH
Confidence 356788888889999887 66679999999999999997765 88899999999999999999754
No 30
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=96.55 E-value=0.0006 Score=60.45 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=51.8
Q ss_pred cccCcchhhhhhhhhccCChhHHHHhhhhhhhccCC-CCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 95 QNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADH-GPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 95 ~~~GiGgvi~Llwfkrrlp~ya~~fiem~l~~~aDh-GpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.+.+.+.-+-..|+. ..+-..+.+++++++.||| |...| +|.+-|++.+|.|+.+|+++|+.+
T Consensus 203 ~~ls~a~nfl~ml~~--p~~~~~~~ld~~LiLhADHeg~N~S-TftaRvvaSt~ad~ysavaagi~a 266 (435)
T 1csh_A 203 SKLDWSHNFTNMLGY--TDPQFTELMRLYLTIHSDHEGGNVS-AHTSHLVGSALSDPYLSFAAAMNG 266 (435)
T ss_dssp TTSCHHHHHHHHHTC--CCHHHHHHHHHHHHHTSCCCSCSHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC--CChHHHHHHHHHHHHccCCCCCchH-HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345556666667765 3466788999999999999 68877 999999999999999999999864
No 31
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=96.29 E-value=0.00095 Score=59.29 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=47.3
Q ss_pred chhhHHHHHHhhC---C--CChhhhhhhhhhhhhccC----CCceeeeccchhhHHHHHhhhhcCCC
Q psy16952 2 RVKIIKEFVLQNF---P--TTPLLNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSF 59 (161)
Q Consensus 2 RV~~lk~~~~~~f---p--~t~~ldyAl~VE~iTt~K----k~NLILNVDG~Igv~fvDllr~~G~F 59 (161)
|..+||+++++.+ + +.|+++.|.+||++..++ +.||--|||+..|+++-+|=--..+|
T Consensus 322 Ra~iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~~~~~~~k~l~pNVDfysg~i~~~lGiP~~~f 388 (436)
T 2h12_A 322 RAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMF 388 (436)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHSHHHHHTTCCBCTHHHHHHHHHHTTCCGGGH
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhccccCCCcChHHHHHHHHHHhCCChhhh
Confidence 8899999998863 5 789999999999998765 46899999999999987663333333
No 32
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=96.16 E-value=0.0014 Score=58.38 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=54.1
Q ss_pred cccCcchhhhhhhhhc----cCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 95 QNMGIGGVLSLLWFQR----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 95 ~~~GiGgvi~Llwfkr----rlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.+.+...-+-..++.+ ...+...+.+++++++.||||...|. |.+-|++.+|.|+.+|+++|+.+
T Consensus 195 ~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST-~taRvvaSt~ad~ysavaAgi~a 263 (427)
T 3msu_A 195 MEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQNAST-STVRLSGSTGNSPYAAIIAGITA 263 (427)
T ss_dssp TTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCCCChhH-HHHHHHHccCCCHHHHHHHHHHH
Confidence 4566666666666666 66788999999999999999987775 88888899999999999999854
No 33
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=95.93 E-value=0.0021 Score=57.12 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=54.0
Q ss_pred hcccCcchhhhhhhhhc-----cCChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 94 KQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 94 ~~~~GiGgvi~Llwfkr-----rlp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
..+.+.+.-+-..++.+ ...+...+.+++++++.||||+..|. +.+-|++.+|.|+.+|+++|+.+
T Consensus 188 ~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST-~taRvvaSt~ad~ysaiaAgi~a 258 (426)
T 3l96_A 188 RNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNAST-STVRTAGSSGANPFACIAAGIAS 258 (426)
T ss_dssp CTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCSSCHHH-HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCCCCchH-HHHHHHhccCCcHHHHHHHHHHh
Confidence 34567777777777776 56688999999999999999987766 56667788999999999999854
No 34
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=95.58 E-value=0.0037 Score=55.52 Aligned_cols=65 Identities=15% Similarity=0.346 Sum_probs=54.9
Q ss_pred cccCcchhhhhhhhhcc-----CChhHHHHhhhhhhhccCCCCcccCccceeeeeccCCchhHHhhhhccc
Q psy16952 95 QNMGIGGVLSLLWFQRQ-----LPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 160 (161)
Q Consensus 95 ~~~GiGgvi~Llwfkrr-----lp~ya~~fiem~l~~~aDhGpaVsGahntivtaragkdlvssl~sGllt 160 (161)
.+.+...-+-+.++.+. ..+...+.+++++++.||||...| ++.+-|++.+|-|+.+|+++|+.+
T Consensus 197 ~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe~NaS-TftaRvvaSt~ad~ysaiaAgi~a 266 (436)
T 2h12_A 197 NDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNAS-TSTVRLAGSTGANPFACIAAGIAA 266 (436)
T ss_dssp TTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCSSCHH-HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCCCchH-HHHHHHHHhcCccHHHHHHHHHHh
Confidence 45677777777777664 668899999999999999999877 788889999999999999999753
No 35
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=47.73 E-value=15 Score=30.15 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=31.8
Q ss_pred ccCCCceeeeccchhh---HHHHHhhhhcCCCCHHHHHHHHHhhc
Q psy16952 31 TSKKPNLILNVDGVIA---VAFVDLLRHSGSFTREEAQEYVEMGA 72 (161)
Q Consensus 31 t~Kk~NLILNVDG~Ig---v~fvDllr~~G~Ft~eEa~e~i~~G~ 72 (161)
..+||-+|+.|||+.- ..+....+.+..|+.+.++++++-|.
T Consensus 55 ~g~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~ 99 (260)
T 3pct_A 55 KGKKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQ 99 (260)
T ss_dssp ---CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCC
Confidence 4577899999999984 34455666777899999999999875
No 36
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=47.35 E-value=11 Score=23.95 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHh
Q psy16952 59 FTREEAQEYVEM 70 (161)
Q Consensus 59 Ft~eEa~e~i~~ 70 (161)
.|+|||+|+=++
T Consensus 3 LT~~EA~EfH~~ 14 (41)
T 1nkz_B 3 LTAEQSEELHKY 14 (41)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999998653
No 37
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=44.45 E-value=16 Score=30.14 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=33.9
Q ss_pred hccCCCceeeeccchhh---HHHHHhhhhcCCCCHHHHHHHHHhhc
Q psy16952 30 TTSKKPNLILNVDGVIA---VAFVDLLRHSGSFTREEAQEYVEMGA 72 (161)
Q Consensus 30 Tt~Kk~NLILNVDG~Ig---v~fvDllr~~G~Ft~eEa~e~i~~G~ 72 (161)
...|||-+|+.|||+.. ..+..-...+..|+.+.++++++-|.
T Consensus 54 ~~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~ 99 (262)
T 3ocu_A 54 AKGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQ 99 (262)
T ss_dssp CTTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTC
T ss_pred cCCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCC
Confidence 34678899999999984 33455566778899999999998865
No 38
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=42.51 E-value=14 Score=23.93 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHh
Q psy16952 59 FTREEAQEYVEM 70 (161)
Q Consensus 59 Ft~eEa~e~i~~ 70 (161)
+|+|||+|+-++
T Consensus 8 LT~~EA~EfH~~ 19 (45)
T 1lgh_B 8 LTEEEAIAVHDQ 19 (45)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 899999998653
No 39
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.54 E-value=18 Score=24.15 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=26.1
Q ss_pred hhhhcCCC-CHHHHHHHHHhhc--ccCccCcccccccCcchh
Q psy16952 52 LLRHSGSF-TREEAQEYVEMGA--INGLFRGQELLYAGMPIS 90 (161)
Q Consensus 52 llr~~G~F-t~eEa~e~i~~G~--lNglFRG~El~YaG~pIS 90 (161)
+|-..|.+ |+++|+++|.-|- .|| +-..-.|+.++
T Consensus 13 ~l~~~gla~SR~~A~~lI~~G~V~Vng----~~v~kps~~V~ 50 (71)
T 2cqj_A 13 VLLKLRMAQHLQAAVAFVEQGHVRVGP----DVVTDPAFLVT 50 (71)
T ss_dssp HHHHTTCSSSHHHHHHHHHTTCEEETT----BCCCCTTCEEE
T ss_pred HHHHhCCcCCHHHHHHHHHCCcEEECC----EEECCCCCCCC
Confidence 67889999 9999999999994 443 43445565554
No 40
>1xkp_B Chaperone protein SYCN; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=41.05 E-value=8.4 Score=29.60 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=33.1
Q ss_pred hhhhhccCChhHH-HHhhhhhhhc-cCCCCcc------cCccceeeeec
Q psy16952 105 LLWFQRQLPPYVC-KFLEMSLMVT-ADHGPAV------SGAHNTIVCAR 145 (161)
Q Consensus 105 Llwfkrrlp~ya~-~fiem~l~~~-aDhGpaV------sGahntivtar 145 (161)
++|.-|.+|.|.+ +-++..+-+| ++||+.. .|.-|-+.++|
T Consensus 47 ~l~LAr~lp~h~~~~~~~kaL~lchy~~a~plpl~~G~~ge~~Lvl~~~ 95 (124)
T 1xkp_B 47 TLWLARSLAWHRCEDAMVXALTLTAAQXSGALPLRAGWLGESQLVLFVS 95 (124)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHTSGGGCCSSCCEEEEETTTEEEEEEE
T ss_pred EEEEeccCChhhcchHHHHHHHHHhhccCCCceeeccccCCceEEEEEE
Confidence 6899999999999 9999999999 9999764 34445566555
No 41
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=36.97 E-value=20 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHHhhhhcCCCCHHHHHHHHHh
Q psy16952 49 FVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 49 fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
++|-|.+.|.||+||.+++-..
T Consensus 27 lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 27 IMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTS
T ss_pred HHHHHHHCCCCCHHHHHHHHcC
Confidence 6788889999999999998763
No 42
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=36.94 E-value=21 Score=23.81 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHhhhhcCCC---CHHHHHHHHHhhcccCccCcccccccCcchhhh
Q psy16952 49 FVDLLRHSGSF---TREEAQEYVEMGAINGLFRGQELLYAGMPISDV 92 (161)
Q Consensus 49 fvDllr~~G~F---t~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V 92 (161)
..++|+++-.| ++++.+++.+....--+-+||-+...|-|...+
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~ 56 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAF 56 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEE
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceE
Confidence 45777777665 789999999999999999999999999988765
No 43
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=35.36 E-value=24 Score=27.73 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHHhhhhcCCCCHHHHHHHHH
Q psy16952 48 AFVDLLRHSGSFTREEAQEYVE 69 (161)
Q Consensus 48 ~fvDllr~~G~Ft~eEa~e~i~ 69 (161)
+++|-|...|.||+||. |.+.
T Consensus 45 ~LLD~LL~~gvLs~EE~-EiV~ 65 (144)
T 4e9m_A 45 CLVDNLLKNDYFSAEDA-EIVC 65 (144)
T ss_dssp HHHHHHHHTTSSCHHHH-HHHH
T ss_pred HHHHHHHHcCCCCHHHH-HHHh
Confidence 56999999999999999 5553
No 44
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=35.33 E-value=29 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.7
Q ss_pred cchhhHHHHHhhhhcCCCCHHHHHHHHHhhc
Q psy16952 42 DGVIAVAFVDLLRHSGSFTREEAQEYVEMGA 72 (161)
Q Consensus 42 DG~Igv~fvDllr~~G~Ft~eEa~e~i~~G~ 72 (161)
|++|+. |+.=+-++|+|+++|.++.=.||-
T Consensus 17 ~~Fi~~-f~~~i~~s~~F~~~q~~Dm~sI~~ 46 (137)
T 3lrd_A 17 ENFMNS-FMQGLSSMPGFTASQLDNMSTIAQ 46 (137)
T ss_dssp HHHHHH-HHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhcCCCCCHHHHHhHHHHHH
Confidence 566665 888999999999999999988883
No 45
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.52 E-value=35 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.0
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHh
Q psy16952 47 VAFVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 47 v~fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
+.|+=.||+.| ||=+|+.+|++.
T Consensus 6 L~~I~~lr~lG-fsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLG-FSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45777899999 999999999975
No 46
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=33.27 E-value=26 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.9
Q ss_pred HHHHHhhhhcCCC-CHHHHHHHHHhh
Q psy16952 47 VAFVDLLRHSGSF-TREEAQEYVEMG 71 (161)
Q Consensus 47 v~fvDllr~~G~F-t~eEa~e~i~~G 71 (161)
..++|+|-.+|+. |+-||++.|+.|
T Consensus 50 ~~ivdlLv~aGLa~SKsEARRlI~qG 75 (164)
T 2ktl_A 50 KTFSKVLWSAGLVASKSEGQRIINNN 75 (164)
T ss_dssp CSHHHHHHHHTSCSTHHHHHHHHHHT
T ss_pred CcHHHHHHHhCcccCHHHHHHHHHhC
Confidence 3599999999998 899999999998
No 47
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=33.11 E-value=32 Score=24.52 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHHhhhhcCCCCHHHHHHHHHh
Q psy16952 49 FVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 49 fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
++|-|-+.|.||+|| +++.+.
T Consensus 32 lLD~LL~~~VL~~ee-~~I~~~ 52 (98)
T 2nz7_A 32 LVDNLLKNDYFSAED-AEIVCA 52 (98)
T ss_dssp HHHHHHHTTSSCHHH-HHHHHT
T ss_pred HHHHHHHcCCCCHHH-HHHHcc
Confidence 567777999999999 888864
No 48
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=32.91 E-value=11 Score=27.39 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=37.5
Q ss_pred HHHhhhhcCCC---CHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 49 FVDLLRHSGSF---TREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 49 fvDllr~~G~F---t~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
..++|+++-.| ++++.+++.+.+..--+-+|+-+...|-|...++
T Consensus 4 ~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y 51 (231)
T 3e97_A 4 RLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALH 51 (231)
T ss_dssp CHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEE
T ss_pred HHHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEE
Confidence 45677776655 8999999999999999999999999999877654
No 49
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.32 E-value=34 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred cchhhH-HHHHhhhhcCCCCHHHHHHHHHhhccc
Q psy16952 42 DGVIAV-AFVDLLRHSGSFTREEAQEYVEMGAIN 74 (161)
Q Consensus 42 DG~Igv-~fvDllr~~G~Ft~eEa~e~i~~G~lN 74 (161)
||.|.. -+..+|++.| ++++|++++++.--.|
T Consensus 23 dG~I~~~el~~~l~~~g-~~~~~~~~i~~~~D~d 55 (92)
T 1fi6_A 23 NGFIPGSAAKEFFTKSK-LPILELSHIWELSDFD 55 (92)
T ss_dssp TCEEEHHHHHHHHHHHS-SCHHHHHHHHHHHCTT
T ss_pred CCcCcHHHHHHHHHHcC-CCHHHHHHHHHHHCCC
Confidence 676654 4677888888 8899999988764444
No 50
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=30.59 E-value=22 Score=23.46 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHhhhhcCC---CCHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 50 VDLLRHSGS---FTREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 50 vDllr~~G~---Ft~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
.++|+++-. +++++.+++.+....--+-+|+-+...|-|...++
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y 50 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLY 50 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEE
Confidence 455666554 57899999999999999999999999999887753
No 51
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=29.81 E-value=35 Score=22.64 Aligned_cols=46 Identities=13% Similarity=-0.027 Sum_probs=38.1
Q ss_pred HHHHhhhhcCCC---CHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 48 AFVDLLRHSGSF---TREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 48 ~fvDllr~~G~F---t~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
.+.++|+++-.| ++++.+++.+....--+-+|+-+...|-|...++
T Consensus 20 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y 68 (139)
T 3ocp_A 20 LIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVY 68 (139)
T ss_dssp HHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEE
T ss_pred HHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEE
Confidence 345777777666 8899999999999988899999999999876543
No 52
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=29.70 E-value=19 Score=23.67 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHhhhhcCC---CCHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 50 VDLLRHSGS---FTREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 50 vDllr~~G~---Ft~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
.++|+++.. +++++.+++.+....--+-+|+-+...|-|...++
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y 56 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 56 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEE
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEE
Confidence 456666554 58899999999999999999999999999887753
No 53
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=29.56 E-value=41 Score=25.25 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=27.4
Q ss_pred cchhhHHHHHhhhhcC-CCCHHHHHHH----HHhhcccCc
Q psy16952 42 DGVIAVAFVDLLRHSG-SFTREEAQEY----VEMGAINGL 76 (161)
Q Consensus 42 DG~Igv~fvDllr~~G-~Ft~eEa~e~----i~~G~lNgl 76 (161)
.-++|.-+||-|-.++ +=|++||..| ++.|++.-+
T Consensus 46 ~cF~GsdlVdWLl~~~~~~sR~EAv~lg~~Ll~~G~i~hV 85 (127)
T 2cso_A 46 HCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYLQPA 85 (127)
T ss_dssp EEEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTSSEEE
T ss_pred ceeechHHHHHHHHcCCCCCHHHHHHHHHHHHHCCeEEeC
Confidence 4578999999888888 5789998655 688876554
No 54
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=29.30 E-value=24 Score=24.58 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHhhcccCccCccc-------ccccCcchhhhhhc
Q psy16952 59 FTREEAQEYVEMGAINGLFRGQE-------LLYAGMPISDVLKQ 95 (161)
Q Consensus 59 Ft~eEa~e~i~~G~lNglFRG~E-------l~YaG~pIS~V~~~ 95 (161)
+|+||+...++.|.-.|.+.-+| +-+..+++++++.+
T Consensus 3 ~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~ 46 (156)
T 3oi8_A 3 ASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMIT 46 (156)
T ss_dssp CCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEE
T ss_pred CCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhheeee
Confidence 67777777777777777665444 34666777777653
No 55
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.18 E-value=40 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=24.3
Q ss_pred cchhhH-HHHHhhhhcCCCCHHHHHHHHHhhcccC
Q psy16952 42 DGVIAV-AFVDLLRHSGSFTREEAQEYVEMGAING 75 (161)
Q Consensus 42 DG~Igv-~fvDllr~~G~Ft~eEa~e~i~~G~lNg 75 (161)
||.|.. -+..+|+.+| +|++|++++++.--.|+
T Consensus 25 dG~Is~~el~~~l~~~~-l~~~~l~~i~~~~D~d~ 58 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSG-LPDLILGKIWDLADTDG 58 (99)
T ss_dssp SSCCCSHHHHHHHHTSS-SCHHHHHHHHHHHCCSS
T ss_pred CCcCCHHHHHHHHHHcC-CCHHHHHHHHHHHCCCC
Confidence 677654 4667888888 78999999887655543
No 56
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=29.15 E-value=22 Score=28.61 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=20.5
Q ss_pred eeccchhhHHHHHhhhhcCCCCHHHHHHHHHh
Q psy16952 39 LNVDGVIAVAFVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 39 LNVDG~Igv~fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
.|||+ .+|-|. .|.||+||.+++...
T Consensus 147 ~~V~~-----lLD~Ll-~~vit~e~~e~I~a~ 172 (215)
T 2kn6_A 147 TNVEW-----LLDALY-GKVLTDEQYQAVRAE 172 (215)
T ss_dssp CCHHH-----HHHHTT-TTTSCHHHHHHHHTC
T ss_pred ccHHH-----HHHHHH-HhhCCHHHHHHHHcC
Confidence 56666 467777 999999999998754
No 57
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=29.05 E-value=35 Score=24.62 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.6
Q ss_pred HHHhhhhcCCCCHHHHHHHHHh
Q psy16952 49 FVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 49 fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
..|-||+||.+|+++.+|+..-
T Consensus 25 l~~yL~q~~VLt~~deEeI~~~ 46 (93)
T 4i16_A 25 LTPYLRQCKVIDEQDEDEVLNA 46 (93)
T ss_dssp HHHHHHHTTSSCHHHHHHHHSS
T ss_pred HHHHHHHcCCCCHHHHHHHhcC
Confidence 6899999999999999998753
No 58
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=28.78 E-value=15 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.9
Q ss_pred hccCCCceeeec----cchhhHHHHHhhhhcC
Q psy16952 30 TTSKKPNLILNV----DGVIAVAFVDLLRHSG 57 (161)
Q Consensus 30 Tt~Kk~NLILNV----DG~Igv~fvDllr~~G 57 (161)
+.+|-.||+||| ||.|--..++.|+.-|
T Consensus 306 ~VskgGnlLLNvgP~~dG~I~~~~~~~L~~iG 337 (450)
T 2wvv_A 306 AVSMGGNMVVNFGPQADGDFRPEEKAMATAIG 337 (450)
T ss_dssp HHHTTCEEEEEECCCTTSSCCHHHHHHHHHHH
T ss_pred HhcCCceEEEeeCCCCCCCcCHHHHHHHHHHH
Confidence 568899999999 9999999999886555
No 59
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=28.57 E-value=38 Score=29.47 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=40.8
Q ss_pred hhhHHHHHHhhC-CCChhhhhhhhhhhhhc--cCCCceeeeccchhhHHHHHhhhhcCCCCHHHHHHH
Q psy16952 3 VKIIKEFVLQNF-PTTPLLNYALEVEKITT--SKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEY 67 (161)
Q Consensus 3 V~~lk~~~~~~f-p~t~~ldyAl~VE~iTt--~Kk~NLILNVDG~Igv~fvDllr~~G~Ft~eEa~e~ 67 (161)
+++|..|..+.- .=+|-|+||-.+..++. ..-.-||--.++.--+--++|||.+..+|+++...+
T Consensus 128 ~~iL~aWf~~~~TrMNPnl~yaQ~i~G~~~~~gr~~Glid~~~~~~~~~A~elLr~s~~wt~~D~~~~ 195 (382)
T 3nnb_A 128 VDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGM 195 (382)
T ss_dssp HHHHHHHHTCTTTCCCSCCTEEEEBTTBGGGCCCGGGGGGGTTHHHHHHHHHHTTTSSSSCHHHHHHH
T ss_pred HHHHHHHHCCCcccCCchhhHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 456666665422 14577999988887762 222234443444334444569999999999987765
No 60
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.38 E-value=17 Score=32.12 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.6
Q ss_pred hccCCCceeeec----cchhhHHHHHhhhhcC
Q psy16952 30 TTSKKPNLILNV----DGVIAVAFVDLLRHSG 57 (161)
Q Consensus 30 Tt~Kk~NLILNV----DG~Igv~fvDllr~~G 57 (161)
+.+|-.||+||| ||.|--.+++-|+.-|
T Consensus 306 sV~~ngnLLLNVgP~~dG~Ip~~~~~rL~e~G 337 (443)
T 3gza_A 306 SVGRNATLILGLTPDPTGLIPAGDAQRLKEMG 337 (443)
T ss_dssp TTTBTCEEEEEECCCTTSSCCHHHHHHHHHHH
T ss_pred HhcCCceEEEecCcCCCCCcCHHHHHHHHHHH
Confidence 458999999999 9999999999998766
No 61
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=28.35 E-value=22 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=37.9
Q ss_pred HHHHhhhhcCCC---CHHHHHHHHHhhcccCcc-CcccccccCcchhhhh
Q psy16952 48 AFVDLLRHSGSF---TREEAQEYVEMGAINGLF-RGQELLYAGMPISDVL 93 (161)
Q Consensus 48 ~fvDllr~~G~F---t~eEa~e~i~~G~lNglF-RG~El~YaG~pIS~V~ 93 (161)
...++|++.-.| ++++.+++.+....--+- +|+-+...|-+...++
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y 62 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWY 62 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEE
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEE
Confidence 345778887555 899999999999998898 9999999998877754
No 62
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=27.37 E-value=56 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.3
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHH
Q psy16952 47 VAFVDLLRHSGSFTREEAQEYVE 69 (161)
Q Consensus 47 v~fvDllr~~G~Ft~eEa~e~i~ 69 (161)
+.|+-=.+..| ||-||+.+|+.
T Consensus 16 l~LI~~Ak~lG-lsleEIrefL~ 37 (57)
T 1b0n_B 16 VELMVEAKEAN-ISPEEIRKYLL 37 (57)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHH
Confidence 45666778899 99999999986
No 63
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.17 E-value=52 Score=21.53 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=24.7
Q ss_pred cchhhH-HHHHhhhhcCCCCHHHHHHHHHhhccc
Q psy16952 42 DGVIAV-AFVDLLRHSGSFTREEAQEYVEMGAIN 74 (161)
Q Consensus 42 DG~Igv-~fvDllr~~G~Ft~eEa~e~i~~G~lN 74 (161)
||.|-. -+..+|++.| ++++|++++++.--.|
T Consensus 24 dG~I~~~el~~~l~~~g-~~~~~~~~i~~~~D~d 56 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTG-LPSTLLAHIWSLCDTK 56 (95)
T ss_dssp SSEECHHHHHHHHHTTT-CCHHHHHHHHHHHCTT
T ss_pred CCcEeHHHHHHHHHHcC-CCHHHHHHHHHHHCCC
Confidence 677755 4778888888 8999999998865544
No 64
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=26.86 E-value=31 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHhhhhcCCC---CHHHHHHHHHhhcccCccCcccccccCcchhhh
Q psy16952 49 FVDLLRHSGSF---TREEAQEYVEMGAINGLFRGQELLYAGMPISDV 92 (161)
Q Consensus 49 fvDllr~~G~F---t~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V 92 (161)
..++|+++-.| ++++.+++.+....--+-+|+-+...|-|...+
T Consensus 37 ~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~l 83 (187)
T 3gyd_A 37 ILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYL 83 (187)
T ss_dssp HHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEE
T ss_pred HHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeE
Confidence 57889988777 789999999999999999999999999887654
No 65
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=26.52 E-value=31 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHhhhhcCCCCHHHHHHHHHh
Q psy16952 49 FVDLLRHSGSFTREEAQEYVEM 70 (161)
Q Consensus 49 fvDllr~~G~Ft~eEa~e~i~~ 70 (161)
++|-|.++|.||++|.+++-..
T Consensus 26 lld~L~~~~VLt~~~~e~I~~~ 47 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINAQ 47 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTTC
T ss_pred HHHHHHHCCCCCHHHHHHHHcC
Confidence 4566889999999999887653
No 66
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=26.27 E-value=15 Score=26.21 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=5.3
Q ss_pred cCCCCHHHHHHHHHhhcccCccCccc-------ccccCcchhhhhh
Q psy16952 56 SGSFTREEAQEYVEMGAINGLFRGQE-------LLYAGMPISDVLK 94 (161)
Q Consensus 56 ~G~Ft~eEa~e~i~~G~lNglFRG~E-------l~YaG~pIS~V~~ 94 (161)
.+.+|+||+...++.|.-.|.+.-+| +.+..+++++++.
T Consensus 4 ~~~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~ 49 (172)
T 3lhh_A 4 DDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMV 49 (172)
T ss_dssp ---------------------------------------CTTTTSE
T ss_pred cccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHHhCc
Confidence 35689999999999988888776554 3567778877776
No 67
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=25.67 E-value=36 Score=22.55 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.5
Q ss_pred hcCCCCHHHHHHHHHh
Q psy16952 55 HSGSFTREEAQEYVEM 70 (161)
Q Consensus 55 ~~G~Ft~eEa~e~i~~ 70 (161)
+.|-.|++|++++.+.
T Consensus 29 ~~G~iTQ~E~D~I~~y 44 (51)
T 2xf7_A 29 NAGDLTQEEADKIMSY 44 (51)
T ss_dssp HHTSSCHHHHHHHHTS
T ss_pred hcCcccHHHHHHHHhC
Confidence 5688999999998864
No 68
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=25.49 E-value=37 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHhhhhcCCCCHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 49 FVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 49 fvDllr~~G~Ft~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
|.+-+..-..++++|.+++.+.+..--+-+||-+...|-|...++
T Consensus 8 l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y 52 (194)
T 3dn7_A 8 LINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINY 52 (194)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEE
Confidence 344445556689999999999999999999999999999877653
No 69
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=25.14 E-value=54 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred HHhhhhcCCCCHHHHHHHHH
Q psy16952 50 VDLLRHSGSFTREEAQEYVE 69 (161)
Q Consensus 50 vDllr~~G~Ft~eEa~e~i~ 69 (161)
+-.|++-| .|+|||++-++
T Consensus 34 ~~FL~sKG-Lt~~EI~~Al~ 52 (54)
T 3ff5_A 34 RAFLKKKG-LTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHH
Confidence 34688889 99999999765
No 70
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.25 E-value=74 Score=20.14 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=21.2
Q ss_pred cchhhH-HHHHhhhhcCCCCHHHHHHHHHhhc
Q psy16952 42 DGVIAV-AFVDLLRHSGSFTREEAQEYVEMGA 72 (161)
Q Consensus 42 DG~Igv-~fvDllr~~G~Ft~eEa~e~i~~G~ 72 (161)
||.|-. -|..+|+..| ++++|++++++.--
T Consensus 41 ~G~I~~~El~~~l~~~g-~~~~~~~~~~~~~D 71 (91)
T 2pmy_A 41 SGRLEREEFRALCTELR-VRPADAEAVFQRLD 71 (91)
T ss_dssp SSSEEHHHHHHHHHHTT-CCHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHcC-cCHHHHHHHHHHhC
Confidence 566644 4667788888 78888888776533
No 71
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=23.11 E-value=64 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=26.4
Q ss_pred cchhhHHHHHhhhhcCCC-CHHHHHHH----HHhhcccCc
Q psy16952 42 DGVIAVAFVDLLRHSGSF-TREEAQEY----VEMGAINGL 76 (161)
Q Consensus 42 DG~Igv~fvDllr~~G~F-t~eEa~e~----i~~G~lNgl 76 (161)
.-++|.-+||-|-..+.. |++||-.+ ++.|++.=+
T Consensus 36 ~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~i~hV 75 (109)
T 1uhw_A 36 HCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGYLQPA 75 (109)
T ss_dssp EECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTSSEEC
T ss_pred ccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCeEEeC
Confidence 457899999988887744 89998655 677876544
No 72
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=23.01 E-value=39 Score=20.23 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=24.5
Q ss_pred hhhhccCCCceeeeccchhhHHHHHhhhhcCCCCHHHHHHHHH
Q psy16952 27 EKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVE 69 (161)
Q Consensus 27 E~iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft~eEa~e~i~ 69 (161)
+++-...=|.+++ ||-+ |..|..+.++..++++
T Consensus 49 ~~~~v~~~Pt~~~--~G~~--------~~~G~~~~~~l~~~l~ 81 (85)
T 1nho_A 49 IEYGLMAVPAIAI--NGVV--------RFVGAPSREELFEAIN 81 (85)
T ss_dssp GGTCSSCSSEEEE--TTTE--------EEECSSCCHHHHHHHH
T ss_pred HhCCceeeCEEEE--CCEE--------EEccCCCHHHHHHHHH
Confidence 3444445688888 8875 6788889999998886
No 73
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=22.73 E-value=15 Score=26.19 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=33.7
Q ss_pred HhhhhcCC---CCHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 51 DLLRHSGS---FTREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 51 Dllr~~G~---Ft~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
++|+++-. ++++|.+.+.+.+..--+-+||-+...|-|...++
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y 48 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLL 48 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEE
Confidence 34444443 58999999999999999999999999998877553
No 74
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=22.49 E-value=40 Score=20.20 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred hhccCCCceeeeccchhhHHHHHhhhhcCCCCHHHHHHHHH
Q psy16952 29 ITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVE 69 (161)
Q Consensus 29 iTt~Kk~NLILNVDG~Igv~fvDllr~~G~Ft~eEa~e~i~ 69 (161)
+-...-|.+++ ||-+ +..|..+.++..++++
T Consensus 52 ~~v~~~Pt~~~--~G~~--------~~~G~~~~~~l~~~l~ 82 (85)
T 1fo5_A 52 YGIMAVPTIVI--NGDV--------EFIGAPTKEALVEAIK 82 (85)
T ss_dssp TTTCCSSEEEE--TTEE--------ECCSSSSSHHHHHHHH
T ss_pred CCCcccCEEEE--CCEE--------eeecCCCHHHHHHHHH
Confidence 33445678888 8875 6788889999988886
No 75
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=21.56 E-value=22 Score=31.36 Aligned_cols=28 Identities=43% Similarity=0.443 Sum_probs=23.1
Q ss_pred hccCCCceeeec----cchhhHHHHHhhhhcC
Q psy16952 30 TTSKKPNLILNV----DGVIAVAFVDLLRHSG 57 (161)
Q Consensus 30 Tt~Kk~NLILNV----DG~Igv~fvDllr~~G 57 (161)
+.+|-.||+||| ||.|--..++.|+.-|
T Consensus 314 ~VskgGnlLLNvgP~~dG~I~~~~~~~L~eiG 345 (455)
T 2zxd_A 314 VVSKGGNLLLNVGPKGDGTIPDLQKERLLGLG 345 (455)
T ss_dssp HHHTTEEEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeCCCCCCCcCHHHHHHHHHHH
Confidence 457889999999 9999888888886444
No 76
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=21.54 E-value=30 Score=23.27 Aligned_cols=44 Identities=7% Similarity=-0.005 Sum_probs=35.5
Q ss_pred HHhhhhcCC---CCHHHHHHHHHhhcccCccCcccccccCcchhhhh
Q psy16952 50 VDLLRHSGS---FTREEAQEYVEMGAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 50 vDllr~~G~---Ft~eEa~e~i~~G~lNglFRG~El~YaG~pIS~V~ 93 (161)
.++|+++-. +++++.+++.+....--+-+|+-+...|-|...++
T Consensus 26 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y 72 (160)
T 4f8a_A 26 RKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLC 72 (160)
T ss_dssp HHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEE
T ss_pred HHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEE
Confidence 455665544 58999999999999988899999999998876544
No 77
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=21.34 E-value=29 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=24.0
Q ss_pred hccCCCceeeec----cchhhHHHHHhhhhcC
Q psy16952 30 TTSKKPNLILNV----DGVIAVAFVDLLRHSG 57 (161)
Q Consensus 30 Tt~Kk~NLILNV----DG~Igv~fvDllr~~G 57 (161)
+.+|-.||+||| ||.|--..++.|+.-|
T Consensus 285 ~Vs~~gnlLLNvgP~~dG~i~~~~~~~L~~~G 316 (469)
T 3eyp_A 285 SVGRNSVLLLNFPPDRRGLIHSTDSLHAALLK 316 (469)
T ss_dssp TTTBTSEEEEECCCCTTSCCCHHHHHHHHHHH
T ss_pred HhcCCCcEEEccCcCCCCCcCHHHHHHHHHHH
Confidence 567999999999 8998888888888666
No 78
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=21.30 E-value=34 Score=25.13 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=36.8
Q ss_pred HHHHhhhhcCC---CCHHHHHHHHHh--hcccCccCcccccccCcchhhhh
Q psy16952 48 AFVDLLRHSGS---FTREEAQEYVEM--GAINGLFRGQELLYAGMPISDVL 93 (161)
Q Consensus 48 ~fvDllr~~G~---Ft~eEa~e~i~~--G~lNglFRG~El~YaG~pIS~V~ 93 (161)
.+.+.|+++-. ++++|.+++.+. ...--+-+||-+...|-|...++
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y 65 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLC 65 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEE
Confidence 35566666654 479999999998 88888899999999998877654
No 79
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A
Probab=20.85 E-value=78 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=26.1
Q ss_pred cchhhH-HHHHhhhhcCCCCHHHHHHHHHhhcccC
Q psy16952 42 DGVIAV-AFVDLLRHSGSFTREEAQEYVEMGAING 75 (161)
Q Consensus 42 DG~Igv-~fvDllr~~G~Ft~eEa~e~i~~G~lNg 75 (161)
||.|.. -+..+|++.|. |++|++++++.--.||
T Consensus 60 DG~I~~~El~~~l~~lG~-t~~ei~~~~~~~D~d~ 93 (123)
T 2kld_A 60 GGKLNFDELRQDLKGKGH-TDAEIEAIFTKYDQDG 93 (123)
T ss_dssp TTCEEHHHHHHHTTTCCS-SHHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHcCCC
Confidence 688876 47788999998 9999999987654443
No 80
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=20.81 E-value=43 Score=21.43 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHhh
Q psy16952 57 GSFTREEAQEYVEMG 71 (161)
Q Consensus 57 G~Ft~eEa~e~i~~G 71 (161)
+.-|++||++|++.|
T Consensus 37 ~F~t~~eA~~~l~~~ 51 (53)
T 3bsu_A 37 KFATEDEAWAFVRKS 51 (53)
T ss_dssp EESSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhC
Confidence 446899999999765
Done!