RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16952
(161 letters)
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase.
Length = 608
Score = 151 bits (382), Expect = 2e-43
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 78 RGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 137
RG+E YAG+P+S +++++ G+G V+SLLWF+R LP Y KF+EM +M+ ADHGP VSGA
Sbjct: 361 RGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVSGA 420
Query: 138 HNTIVCARAGKDLVSSLVSGLLTI 161
HNTIV ARAGKDLVSSLVSGLLTI
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTI 444
Score = 97.6 bits (243), Expect = 3e-24
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 2 RVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 61
RV++++++ +FP+ + YA++VE T SK NL+LNVDG I F+DLL SG FT+
Sbjct: 499 RVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTK 558
Query: 62 EEAQEYVEMGAINGLF 77
+E E VE+G +NGLF
Sbjct: 559 QEIDEIVEIGYLNGLF 574
>gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion
of the single-subunit type ATP-citrate lyase (ACL) and
the C-terminal portion of the large subunit of the
two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to
acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes
an ATP- and a CoA- dependant cleavage of citrate to form
AcCoA and OAA in a multistep reaction, the final step of
which is likely to involve the cleavage of CiCoA to
generate AcCoA and OAA. In fungi, yeast, plants, and
animals ACL is cytosolic and generates AcCoA for
lipogenesis. ACL may be required for fruiting body
maturation in the filamentous fungus Sordaria
macrospore. In several groups of autotrophic prokaryotes
and archaea, ACL carries out the citrate-cleavage
reaction of the reductive tricarboxylic acid (rTCA)
cycle. In the family Aquificaceae this latter reaction
in the rTCA cycle is carried out via a two enzyme system
the second enzyme of which is CCL; the first enzyme is
citryl-CoA synthetase (CCS) which is not included in
this group. Chlorobium limicola ACL is an example of a
two-subunit type ACL. It is comprised of a large and a
small subunit; it has been speculated that the large
subunit arose from a fusion of the small subunit of the
two subunit CCS with CCL. The small ACL subunit is a
homolog of the larger CCS subunit. Mammalian ACL is of
the single-subunit type and may have arisen from the
two-subunit ACL by another gene fusion. Mammalian ACLs
are homotetramers; the ACLs of C. limicola and
Arabidopsis are a heterooctomers (alpha4beta4). In
cancer cells there is a shift in energy metabolism to
aerobic glycolysis, the glycolytic end product pyruvate
enters a truncated TCA cycle generating citrate which is
cleaved in the cytosol by ACL. Inhibiting ACL limits the
in-vitro proliferation and survival of these cancer
cells, reduces in vivo tumor growth, and induces
differentiation.
Length = 227
Score = 96.1 bits (240), Expect = 3e-25
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 86 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 145
G +SD++ + G VL LL R PY + LE L+ ADHGPA AH + A
Sbjct: 1 GYDLSDLIG-KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTAS 59
Query: 146 AG-KDLVSSLVSGLLTI 161
AG +DL S++ +GLL I
Sbjct: 60 AGPEDLQSAVAAGLLGI 76
Score = 68.4 bits (168), Expect = 1e-14
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 1 MRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKP-NLILNVDGVIAVAFVDLLRHSGSF 59
RV + E + P P L+YAL VEK T+ K L LNVDG IA +DL G
Sbjct: 132 PRVPRLLELARELGPAGPHLDYALAVEKALTAAKGKPLPLNVDGAIAAILLDL----GFP 187
Query: 60 TREEAQEYVEMGAINGLF 77
GA+ GLF
Sbjct: 188 P----------GALRGLF 195
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion].
Length = 390
Score = 46.5 bits (111), Expect = 1e-06
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 105 LLWFQRQLP--PYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI 161
L + P P + ++ +L++ ADH S V A G DL + + +G+ +
Sbjct: 169 LYMLFGEPPSPPVEARAMDRALILHADHELNAS-TFTARVVASTGSDLYACIAAGIGAL 226
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase.
Length = 352
Score = 29.4 bits (67), Expect = 0.67
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 2 RVKIIKEF---VLQNFPTTPLLNYALEVEKITTS--KKPNLILNVD 42
R KI+K+F + PLL A ++E++ K+ L NVD
Sbjct: 262 RAKILKKFARELAAELGDDPLLEIAEKIEEVALEDLKEKKLYPNVD 307
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase
(CS)_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). This group is similar to
gram-negative Escherichia coli (Ec) CS (type II, gltA)
and Arabidopsis thaliana (Ath) peroxisomal (Per) CS.
However EcCS and AthPerCS are not found in this group.
The overall CS reaction is thought to proceed through
three partial reactions and involves both closed and
open conformational forms of the enzyme: a) the
carbanion or equivalent is generated from AcCoA by base
abstraction of a proton, b) the nucleophilic attack of
this carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs
are strongly and specifically inhibited by NADH through
an allosteric mechanism. C. aurantiacus is a
gram-negative thermophilic green gliding bacterium, its
CS belonging to this group may be a type I CS; it is not
inhibited by NADH or 2-oxoglutarate and is inhibited by
ATP. Both gram-positive and gram-negative bacteria are
found in this group.
Length = 384
Score = 28.6 bits (64), Expect = 1.5
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 2 RVKIIKEFVLQNFPTT---PLLNYALEVEKIT------TSKKPNLILNVD 42
R +IIK+ + F T PLL+ A+E+EKI S+K L NVD
Sbjct: 275 RARIIKKIADEVFEATGRNPLLDIAVELEKIALEDEYFISRK--LYPNVD 322
>gnl|CDD|151200 pfam10707, YrbL-PhoP_reg, PhoP regulatory network protein YrbL.
This is a family of proteins that are activated by PhoP.
PhoP protein controls the expression of a large number
of genes that mediate adaptation to low Mg2+
environments and/or virulence in several bacterial
species. YbrL is proposed to be acting in a loop
activity with PhoP and PrmA analogous to the
multicomponent loop in Salmonella where the
PhoP-dependent PmrD protein activates the regulatory
protein PmrA, and the activated PmrA then represses
transcription from the PmrD promoter which harbours
binding sites for both the PhoP and PmrA proteins.
Expression of YrbL is induced in low Mg2+ in a
PhoP-dependent fashion and repressed by Fe3+ in a
PmrA-dependent manner.
Length = 199
Score = 28.0 bits (63), Expect = 1.7
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 37 LILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELLYAGMPISDVLKQN 96
I + DG I+ DLL++ G T + A+N + LL + D+ N
Sbjct: 98 RIRDADGNISPTLEDLLKNGG-LTAALRE------ALNEFK--RYLLDNHIVARDLNPHN 148
Query: 97 M 97
+
Sbjct: 149 I 149
>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2
(SH2) domain found in Zeta-chain-associated protein
kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk)
proteins. ZAP-70 and Syk comprise a family of
hematopoietic cell specific protein tyrosine kinases
(PTKs) that are required for antigen and antibody
receptor function. ZAP-70 is expressed in T and natural
killer (NK) cells and Syk is expressed in B cells, mast
cells, polymorphonuclear leukocytes, platelets,
macrophages, and immature T cells. They are required
for the proper development of T and B cells, immune
receptors, and activating NK cells. They consist of two
N-terminal Src homology 2 (SH2) domains and a
C-terminal kinase domain separated from the SH2 domains
by a linker or hinge region. Phosphorylation of both
tyrosine residues within the Immunoreceptor
Tyrosine-based Activation Motifs (ITAM; consensus
sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs
is required for efficient interaction of ZAP-70 and Syk
with the receptor subunits and for receptor function.
ZAP-70 forms two phosphotyrosine binding pockets, one
of which is shared by both SH2 domains. In Syk the two
SH2 domains do not form such a phosphotyrosine-binding
site. The SH2 domains here are believed to function
independently. In addition, the two SH2 domains of Syk
display flexibility in their relative orientation,
allowing Syk to accommodate a greater variety of
spacing sequences between the ITAM phosphotyrosines and
singly phosphorylated non-classical ITAM ligands. This
model contains the N-terminus SH2 domains of both Syk
and Zap70. In general SH2 domains are involved in
signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 104
Score = 27.0 bits (60), Expect = 2.4
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 57 GSFTREEAQEYVEMGAIN-GLF 77
GS TREEA+EY+++ ++ GLF
Sbjct: 6 GSITREEAEEYLKLAGMSDGLF 27
>gnl|CDD|214829 smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl
hydrolases (EC 3.2.1.-) are a widespread group of
enzymes that hydrolyse the glycosidic bond between two
or more carbohydrates, or between a carbohydrate and a
non-carbohydrate moiety. A classification system for
glycosyl hydrolases, based on sequence similarity, has
led to the definition of 85 different families. This
classification is available on the CAZy
(CArbohydrate-Active EnZymes) web site. Because the fold
of proteins is better conserved than their sequences,
some of the families can be grouped in 'clans'. Family
29 encompasses alpha-L-fucosidases, which is a lysosomal
enzyme responsible for hydrolyzing the alpha-1,6-linked
fucose joined to the reducing-end N-acetylglucosamine of
the carbohydrate moieties of glycoproteins. Deficiency
of alpha-L-fucosidase results in the lysosomal storage
disease fucosidosis.
Length = 384
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 30 TTSKKPNLILNV----DGVIAVAFVDLLRHSGSF 59
SK NL+LNV DG I + L G +
Sbjct: 296 IVSKGGNLLLNVGPKADGTIPPEEEERLLEIGKW 329
>gnl|CDD|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance
to organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 359
Score = 27.8 bits (62), Expect = 2.6
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 43 GVIAVAFVDLLRHSGSFTREEAQEY---VEMGAINGLFRGQELLYAGMPISDV 92
G++AV L + Y GL+ G + Y G+ + V
Sbjct: 17 GLLAVLLFVLWLATLPGLPGGTGTYTVTAYFDDAGGLYVGSPVRYRGVKVGKV 69
>gnl|CDD|217277 pfam02901, PFL, Pyruvate formate lyase.
Length = 646
Score = 27.6 bits (62), Expect = 3.0
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 24/60 (40%)
Query: 56 SGSFTREEAQEYVEM-------------GAINGLFRGQELLYAGMPISDVLKQNMGIGGV 102
+G T EEAQE ++ LF +G P QN+ IGG
Sbjct: 294 AGRLTEEEAQELIDCLWIKLREVRFLRTPEYAKLF-------SGYPPF----QNLTIGGQ 342
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 27.2 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 17/53 (32%)
Query: 50 VDLLRHSGSFTREE------------AQEYVEMG----AINGL-FRGQELLYA 85
+DLLR +G E AQE +E I GL + +L A
Sbjct: 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLA 296
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.5 bits (61), Expect = 4.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 19 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEM 70
L N +E +K N I N+ I +L+ SFT E + + E+
Sbjct: 2241 LFNNVVETQKKKLLDNKNKINNIKDKINDKEKELINVDSSFTLESIKTFNEI 2292
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase.
Length = 455
Score = 27.3 bits (61), Expect = 4.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 114 PYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGL 158
P + + L++ ++ ADH S A + +G D +S+ +G+
Sbjct: 242 PRLARLLDLYFIIHADHEGGCSTAAARHLVGSSGVDPYTSVAAGV 286
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate
synthase (CS) gltA and Arabidopsis thaliana (Ath)
peroxisomal (Per) CS_like. CS catalyzes the condensation
of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to
form citrate and coenzyme A (CoA), the first step in the
citric acid cycle (TCA or Krebs cycle). The overall CS
reaction is thought to proceed through three partial
reactions and involves both closed and open
conformational forms of the enzyme: a) the carbanion or
equivalent is generated from AcCoA by base abstraction
of a proton, b) the nucleophilic attack of this
carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs,
including EcCS, are strongly and specifically inhibited
by NADH through an allosteric mechanism. Included in
this group is an NADH-insensitive type II Acetobacter
acetii CS which has retained many of the residues used
by EcCS for NADH binding. C. aurantiacus is a
gram-negative thermophilic green gliding bacterium; its
CS belonging to this group may be a type I CS. It is
not inhibited by NADH or 2-oxoglutarate and is inhibited
by ATP. Both gram-positive and gram-negative bacteria
are found in this group. This group also contains three
Arabidopsis peroxisomal CS proteins, CYS-1, -2, and -3
which participate in the glyoxylate cycle. AthCYS1, in
addition to a peroxisomal targeting sequence, has a
predicted secretory signal peptide; it may be targeted
to both the secretory pathway and the peroxisomes and
perhaps is located in the extracellular matrix. AthCSY1
is expressed only in siliques and specifically in
developing seeds. AthCSY2 and 3 are active during seed
germination and seedling development and are thought to
participate in the beta-oxidation of fatty acids.
Length = 382
Score = 27.0 bits (60), Expect = 4.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 2 RVKIIKEF---VLQNFPTTPLLNYALEVEKITTS----KKPNLILNVD 42
R K+I+E VL PLL A+E+E+I L NVD
Sbjct: 282 RAKVIREILHEVLTEVEKDPLLKVAMELERIALEDEYFVSRKLYPNVD 329
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional.
Length = 263
Score = 26.8 bits (60), Expect = 5.2
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 81 ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNT 140
E+ G + D++ + ++ LL R P + L+ L+ DHG S
Sbjct: 20 EIYVRGYDLEDLIG-KLSFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPS----- 73
Query: 141 IVCAR----AGKDLVSSLVSGLL 159
AR G+ L ++ +GLL
Sbjct: 74 AAAARMTASGGESLQGAVAAGLL 96
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at
the C-terminus. The beta chain has catalytic activity,
while the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 27.0 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 68 VEMGAINGLFRGQELLYAGMPIS 90
+ MG+ +GL RG E++ G PIS
Sbjct: 55 IAMGSTDGLVRGLEVIDTGAPIS 77
>gnl|CDD|202483 pfam02952, Fucose_iso_C, L-fucose isomerase, C-terminal domain.
Length = 140
Score = 26.1 bits (58), Expect = 6.8
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 52 LLRHSGSFTREEAQEYVEMG----AINGLFRG-----QELLYAGMPI 89
L H G+ + +E + M FRG A P+
Sbjct: 6 HLFHCGNAASSDPEENLAMTTQYPIGRTFFRGGGFGSVFGTLAPGPV 52
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the
condensation of acetyl coenzyme A (AcCoA) and
oxalacetate (OAA) to form citrate and coenzyme A (CoA),
the first step in the oxidative citric acid cycle (TCA
or Krebs cycle). Peroxisomal CS is involved in the
glyoxylate cycle. This group also includes CS proteins
which functions as a 2-methylcitrate synthase (2MCS).
2MCS catalyzes the condensation of propionyl-CoA (PrCoA)
and OAA to form 2-methylcitrate and CoA during
propionate metabolism. This group contains proteins
which functions exclusively as either a CS or a 2MCS, as
well as those with relaxed specificity which have dual
functions as both a CS and a 2MCS. The overall CS
reaction is thought to proceed through three partial
reactions and involves both closed and open
conformational forms of the enzyme: a) the carbanion or
equivalent is generated from AcCoA by base abstraction
of a proton, b) the nucleophilic attack of this
carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs
are strongly and specifically inhibited by NADH through
an allosteric mechanism.
Length = 358
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 118 KFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGL 158
K ++++L++ ADH S V A D+ S++ + +
Sbjct: 168 KAMDLALILHADHEGNAS-TFTARVVASTLSDMYSAIAAAI 207
>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein. This model
describes a protein family of unknown function, about
690 residues in length, in which some members show
C-terminal sequence similarity to pfam05362, which is
the Lon protease C-terminal proteolytic domain, from
MEROPS family S16. However, the annotated catalytic
sites of E. coli Lon protease are not conserved in
members of this family. Members have a motif
GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
GxxGxGK[ST] [Hypothetical proteins, Conserved].
Length = 675
Score = 26.3 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 39 LNVDGVIAV-----AFVDLLRHSGSFTREEAQEYVEMGAINGLFRGQELL 83
LN VIAV + LL G +T+++ +E + A+ G R +E L
Sbjct: 403 LNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTY-AMEGRRRVKEQL 451
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 26.0 bits (58), Expect = 9.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 70 MGAINGLFRGQELLYAGMPIS 90
MG+ +GL RG E++ G PIS
Sbjct: 59 MGSTDGLVRGLEVIDTGKPIS 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.399
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,237,571
Number of extensions: 771081
Number of successful extensions: 689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 33
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)