RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16952
         (161 letters)



>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 367

 Score = 29.8 bits (66), Expect = 0.14
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 1   MRVKIIKEFVLQNFPTTPLLNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGS 58
           +  K+    + +N         A ++E++         +  N D    + F  L      
Sbjct: 268 IFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYM 327

Query: 59  FT 60
           FT
Sbjct: 328 FT 329


>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus
           [TaxId: 274]}
          Length = 374

 Score = 27.5 bits (60), Expect = 0.75
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 2   RVKIIKEFVLQNFPTT-----PLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHS 56
           R  ++++                +   +E E         +  NVD    V + DL    
Sbjct: 265 RAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSL 324

Query: 57  GSFT 60
             FT
Sbjct: 325 EFFT 328


>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 371

 Score = 27.5 bits (60), Expect = 0.89
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 1   MRVKIIKEFVLQNFPTTPLLNYALEVEKI--TTSKKPNLILNVDGVIAVAFVDLLRHSGS 58
                I +          L   A  +E++      K  + +NVD    + F  +      
Sbjct: 264 DPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIPIEL 323

Query: 59  FT 60
           +T
Sbjct: 324 YT 325


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 56  SGSFTREEAQEYVEMGAINGLFRGQELL----YAGMPISDVLKQNMGIGGV 102
           +G  T +EAQE V+   +    R    L    Y  +   D +     IGG+
Sbjct: 293 AGKITEQEAQEMVDHLVMK--LRMVRFLRTPEYDELFSGDPIWATESIGGM 341


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 53  LRHSGSFTREEAQEYVE-----MGAINGLF-RGQELLYAGMPISDVLKQNMGIGGV 102
             +  + T + AQE ++     +  IN +        + G P+     QN+ +GG 
Sbjct: 295 YENDKNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMY----QNLIVGGQ 346


>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 59

 Score = 24.0 bits (52), Expect = 3.5
 Identities = 2/22 (9%), Positives = 6/22 (27%)

Query: 52 LLRHSGSFTREEAQEYVEMGAI 73
           +      +R  A   +    +
Sbjct: 6  FIAQQLGVSRAIAGREIRGNRV 27


>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
          domain {Haemophilus influenzae [TaxId: 727]}
          Length = 58

 Score = 23.9 bits (52), Expect = 3.6
 Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 52 LLRHSGSFTREEAQEYVEMGAI--NG 75
           +  +   TR +A + +   A+  NG
Sbjct: 7  FIAENVGLTRSQATKAIRQSAVKING 32


>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 160

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 45  IAVAFVDLLRHSGSFTREEAQEYVEM 70
           +   F D++   G     +A +YV+ 
Sbjct: 122 VQNTFYDIVAEFGPMEHTQAVDYVKK 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,701
Number of extensions: 24751
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 11
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)