BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16953
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/487 (62%), Positives = 353/487 (72%), Gaps = 51/487 (10%)
Query: 82 SWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNY 141
S ++ D +LI GG IANFTNVAATFKGIV A+ ++Q L EH+++IFVRR GPNY
Sbjct: 325 SLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNY 384
Query: 142 QEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGKKEIPSE----------------- 184
QEGLR++ EVGKT GIP+ VFG ETHMTAIVGMALG + IP++
Sbjct: 385 QEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGS 444
Query: 185 --TSADGATANFLLPGGQE--------------------------------QTKAIVWGM 210
T A TA+F E TKAIVWGM
Sbjct: 445 TSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWGM 504
Query: 211 QTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNK 270
QTRAVQ MLDFD+VC R EPSVAAMVYPFTGDHK KFYWGHKE+LIPV+K M DAM K+
Sbjct: 505 QTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHP 564
Query: 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330
+ DVL+NFASLRSAYDST+ET+ + QIR+IAIIAEGIPE +TRKL A +KGV+IIGPA
Sbjct: 565 EVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPA 624
Query: 331 TVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEG 390
TVGG+KPGCFKIGNTGGM+DNIL SKLYRPGSVAYVSRSGGMSNELNNIIS+ T+GVYEG
Sbjct: 625 TVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG 684
Query: 391 VAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXXXXXXXXCAALKDKRITKPLVAWC 450
VAIGGDRYPG+TFMDH+LRYQ P VKMI C +K+ R+TKP+V WC
Sbjct: 685 VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWC 744
Query: 451 IGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510
IGTCA+MF+SEVQFGHAG+CAN +ETAV KN++L +AG VP SFD LG+II SVY+DL
Sbjct: 745 IGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDL 804
Query: 511 VSRGDIV 517
V+ G IV
Sbjct: 805 VANGVIV 811
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 MSAKAISEATGKDIINRNLDPNTAAA-KCRFAAVKEETSWAELVRNEPWLESSKLVAKPD 59
MSAKAISE TGK+++ + + +A + ++A V +T WA L+++ PWL S LV KPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 60 QLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANF 104
QLIKRRGKLGL+ VN G +SW+ R+G++ V G + NF
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/316 (73%), Positives = 265/316 (83%)
Query: 202 QTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKK 261
TKAIVWGMQTRAVQ MLDFD+VC R EPSVAAMVYPFTGDHK KFYWGHKE+LIPV+K
Sbjct: 10 HTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKN 69
Query: 262 MEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKE 321
M DAM K+ + DVL+NFASLRSAYDST+ET+ + QIR+IAIIAEGIPE +TRKL A +
Sbjct: 70 MADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQ 129
Query: 322 KGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIIS 381
KGV+IIGPATVGG+KPGCFKIGNTGGM+DNIL SKLYRPGSVAYVSRSGGMSNELNNIIS
Sbjct: 130 KGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIIS 189
Query: 382 KATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXXXXXXXXCAALKDKR 441
+ T+GVYEGVAIGGDRYPG+TFMDH+LRYQ P VKMI C +K+ R
Sbjct: 190 RTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGR 249
Query: 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGD 501
+TKP+V WCIGTCA+MF+SEVQFGHAG+CAN +ETAV KN++L +AG VP SFD LG+
Sbjct: 250 LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGE 309
Query: 502 IIGSVYKDLVSRGDIV 517
II SVY+DLV+ G IV
Sbjct: 310 IIQSVYEDLVANGVIV 325
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/316 (70%), Positives = 253/316 (80%)
Query: 202 QTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKK 261
TKAIVWG QTRAVQ LDFD+VC R EPSVAA VYPFTGDHK KFYWGHKE+LIPV+K
Sbjct: 10 HTKAIVWGXQTRAVQGXLDFDYVCSRDEPSVAAXVYPFTGDHKQKFYWGHKEILIPVFKN 69
Query: 262 MEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKE 321
DA K+ + DVL+NFASLRSAYDST ET + QIR+IAIIAEGIPE +TRKL A +
Sbjct: 70 XADAXRKHPEVDVLINFASLRSAYDSTXETXNYAQIRTIAIIAEGIPEALTRKLIKKADQ 129
Query: 322 KGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIIS 381
KGV+IIGPATVGG+KPGCFKIGNTGG +DNIL SKLYRPGSVAYVSRSGG SNELNNIIS
Sbjct: 130 KGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLYRPGSVAYVSRSGGXSNELNNIIS 189
Query: 382 KATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXXXXXXXXCAALKDKR 441
+ T+GVYEGVAIGGDRYPG+TF DH+LRYQ P VK I C +K+ R
Sbjct: 190 RTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKXIVVLGEIGGTEEYKICRGIKEGR 249
Query: 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGD 501
+TKP+V WCIGTCA+ F+SEVQFGHAG+CAN +ETAV KN++L +AG VP SFD LG+
Sbjct: 250 LTKPIVCWCIGTCATXFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGE 309
Query: 502 IIGSVYKDLVSRGDIV 517
II SVY+DLV+ G IV
Sbjct: 310 IIQSVYEDLVANGVIV 325
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 79/101 (78%)
Query: 82 SWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNY 141
S ++ D +LI GG IANFTNVAATFKGIV A+ ++Q L EH+++IFVRR GPNY
Sbjct: 325 SLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNY 384
Query: 142 QEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGKKEIP 182
QEGLR++ EVGKT GIP+ VFG ETHMTAIVGMALG + IP
Sbjct: 385 QEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIP 425
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 MSAKAISEATGKDIINRNLDPNTAAA-KCRFAAVKEETSWAELVRNEPWLESSKLVAKPD 59
MSAKAISE TGK+++ + + +A + ++A V +T WA L+++ PWL S LV KPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 60 QLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANF 104
QLIKRRGKLGL+ VN G +SW+ R+G++ V G + NF
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 73/92 (79%)
Query: 91 DQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIRE 150
D +LI GG IANFTNVAATFKGIV A+ ++Q L EH+++IFVRR GPNYQEGLR+ E
Sbjct: 334 DGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGE 393
Query: 151 VGKTLGIPLFVFGPETHMTAIVGMALGKKEIP 182
VGKT GIP+ VFG ETH TAIVG ALG + IP
Sbjct: 394 VGKTTGIPIHVFGTETHXTAIVGXALGHRPIP 425
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 2 SAKAISEATGKDIINRNLDPNTAAA-KCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQ 60
SAKAISE TGK+++ + + +A + ++A V +T WA L+++ PWL S LV KPDQ
Sbjct: 2 SAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQ 61
Query: 61 LIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANF 104
LIKRRGKLGL+ VN G +SW+ R+G++ V G + NF
Sbjct: 62 LIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 12/237 (5%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PVY +++A++++ + + + F A D+ E + IR + +I EGIP + T +
Sbjct: 56 VPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVD-AGIRLVVVITEGIPVHDTMRF 114
Query: 316 NLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375
A++KG +IIGP G + PG K+G I+ +++ G VA VSRSG ++ E
Sbjct: 115 VNYARQKGATIIGPNCPGAITPGQAKVG--------IMPGHIFKEGGVAVVSRSGTLTYE 166
Query: 376 LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXXXXXXXXCA 435
++ ++++ G + IGGD G +F + + +Q DP+ + +
Sbjct: 167 ISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAE 226
Query: 436 ALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHV 492
+K TKP++A+ G A E + GHAG+ T K K+L +AG V
Sbjct: 227 MIKKGEFTKPVIAYIAGRTAP---PEKRMGHAGAIIMMGTGTYEGKVKALREAGVEV 280
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP T G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNTPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +K+ +TKP+V + G A + GHAG+ TA K +L
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEA 267
Query: 488 AGAHVPSSFDTLGDIIGSVYK 508
AG S +G+ + +V K
Sbjct: 268 AGVKTVRSLADIGEALKTVLK 288
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP + G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNSPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +K+ +TKP+V + G A + GHAG+ TA K +L
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEA 267
Query: 488 AGAHVPSSFDTLGDIIGSVYK 508
AG S +G+ + +V K
Sbjct: 268 AGVKTVRSLADIGEALKTVLK 288
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 34/310 (10%)
Query: 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI 256
E TKAIV G+ R + ML+ C + V P G + +
Sbjct: 12 ENTKAIVQGITGRQGSFHTKKMLE----CGTK---IVGGVTPGKGGQNVHG--------V 56
Query: 257 PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLN 316
PV+ +++A+ K DA+ V F A D+ E + I I +I E IP + T +
Sbjct: 57 PVFDTVKEAV-KETDANASVIFVPAPFAKDAVFEAID-AGIELIVVITEHIPVHDTMEFV 114
Query: 317 LLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNEL 376
A++ GV IIGP T G P K+G I+ ++ + GSV VSRSG ++ E+
Sbjct: 115 NYAEDVGVKIIGPNTPGIASPKVGKLG--------IIPMEVLKEGSVGMVSRSGTLTYEI 166
Query: 377 NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXXXXXXXXCAA 436
+ I KA GV V IGGD G + + + ++ D E + I
Sbjct: 167 AHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKF 226
Query: 437 LKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF 496
+ +++ KP++ + G A + GHAG+ TA K K+L +AGA+V +
Sbjct: 227 I--EKMKKPVIGYIAGQSAP---EGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNI 281
Query: 497 DTLGDIIGSV 506
+ ++ +
Sbjct: 282 SDIPKLLAGI 291
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNVPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +K+ +TKP+V + G A + GHAG+ TA K +L
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEA 267
Query: 488 AGAHVPSSFDTLGDIIGSVYK 508
AG S +G+ + +V K
Sbjct: 268 AGVKTVRSLADIGEALKTVLK 288
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNCPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +K+ +TKP+V + G A + GHAG+ TA K +L
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEA 267
Query: 488 AGAHVPSSFDTLGDIIGSVYK 508
AG S +G+ + +V K
Sbjct: 268 AGVKTVRSLADIGEALKTVLK 288
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 18/259 (6%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNCPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +K+ +TKP+V + G A + GHAG+ TA K +L
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEA 267
Query: 488 AGAHVPSSFDTLGDIIGSV 506
AG S +G+ + +V
Sbjct: 268 AGVKTVRSLADIGEALKTV 286
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP T G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNTPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCA 455
A +K+ +TKP+V + G A
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNAPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCA 455
A +K+ +TKP+V + G A
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 250 GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP- 308
G + +PV+ + +A++ A V + DS +E + I+ I I EGIP
Sbjct: 44 GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPT 101
Query: 309 -ENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
+ +T K+ L E GV +IGP G + PG KIG I +++PG V VS
Sbjct: 102 LDMLTVKVKL--DEAGVRMIGPNCPGVITPGECKIG--------IQPGHIHKPGKVGIVS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E + G V IGGD PG+ F+D + ++ DP+ + I
Sbjct: 152 RSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCA 455
A +K+ +TKP+V + G A
Sbjct: 212 SAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 250 GHKEVL-IPVYKKMEDAMSKNK-DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307
G EVL +PVY +++A++ ++ DA ++ A + G P I +I EGI
Sbjct: 43 GGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLI---VLITEGI 99
Query: 308 PENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
P L+++ + + +G +GG PG T I+ +++ G V +S
Sbjct: 100 P-----TLDMVRAVEEIKALGSRLIGGNCPGIISAEET---KIGIMPGHVFKRGRVGIIS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E +S+A G V IGGD GTTF D + + DPE + +
Sbjct: 152 RSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +KD + KP+V + G A + GHAG+ + T K ++ A+
Sbjct: 212 SDEEEAAAWVKD-HMKKPVVGFIGGRSAPKGK---RMGHAGAIIMGNVGTPESKLRAFAE 267
Query: 488 AGAHVPSSFDTLGDII 503
AG V + D + +++
Sbjct: 268 AGIPVADTIDEIVELV 283
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 250 GHKEVL-IPVYKKMEDAMSKNK-DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307
G EVL +PVY +++A++ ++ DA ++ A + G P I +I EGI
Sbjct: 43 GGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLI---VLITEGI 99
Query: 308 PENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVS 367
P L+++ + + +G +GG PG T I+ +++ G V +S
Sbjct: 100 P-----TLDMVRAVEEIKALGSRLIGGNCPGIISAEET---KIGIMPGHVFKRGRVGIIS 151
Query: 368 RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIXXXXXXXX 427
RSG ++ E +S+A G V IGGD GTTF D + + DPE + +
Sbjct: 152 RSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211
Query: 428 XXXXXXCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
A +KD + KP+V + G A + GHAG+ + T K ++ A+
Sbjct: 212 SDEEEAAAWVKD-HMKKPVVGFIGGRSAPKGK---RMGHAGAIIMGNVGTPESKLRAFAE 267
Query: 488 AGAHVPSSFDTLGDII 503
AG V + D + +++
Sbjct: 268 AGIPVADTIDEIVELV 283
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 296 QIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILH 354
++ + I EGIP+ +M R + L ++ +IGP G + PG KIG I+
Sbjct: 95 EVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMP 146
Query: 355 SKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP 414
+++ G + VSRSG ++ E + ++ G V IGGD + GT F D + + DP
Sbjct: 147 GHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP 206
Query: 415 EVKMIXXXXXXXXXXXXXXCAALKDKRI---TKPLVAWCIGTCASMFTSEVQFGHAGSCA 471
+ I LK +KP+V++ G A + GHAG+
Sbjct: 207 ATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAP---PGRRMGHAGAII 263
Query: 472 NSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSR 513
A K +L AG V S LG ++YK+ R
Sbjct: 264 AGGKGGAKEKITALQSAGVVVSMSPAQLGT---TIYKEFEKR 302
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 18/218 (8%)
Query: 300 IAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLY 358
+ I EGIP+ +M R + L ++ +IGP G + PG KIG I+ ++
Sbjct: 105 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 156
Query: 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKM 418
+ G + VSRSG ++ E + ++ G V IGGD + GT F D + + DP +
Sbjct: 157 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEG 216
Query: 419 IXXXXXXXXXXXXXXCAALKDKRI---TKPLVAWCIGTCASMFTSEVQFGHAGSCANSDA 475
I LK +KP+V++ G A + GHAG+
Sbjct: 217 IILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAP---PGRRMGHAGAIIAGGK 273
Query: 476 ETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSR 513
A K +L AG V S LG ++YK+ R
Sbjct: 274 GGAKEKITALQSAGVVVSMSPAQLGT---TIYKEFEKR 308
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 300 IAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLY 358
+ I EGIP+ +M R + L ++ +IGP G + PG KIG I+ ++
Sbjct: 105 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 156
Query: 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP 414
+ G + VSRSG ++ E + ++ G V IGGD + GT F D + + DP
Sbjct: 157 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP 212
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 300 IAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLY 358
+ I EGIP+ +M R + L ++ +IGP G + PG KIG I+ ++
Sbjct: 99 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 150
Query: 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP 414
+ G + VSRSG ++ E + ++ G V IGGD + GT F D + + DP
Sbjct: 151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP 206
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 617 IVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKL 675
+V A DL S +V L + G GGA + EFV + K+ +
Sbjct: 186 LVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVE-EFVQKCLKEKRK 244
Query: 676 IMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEK-ITTSKKPNLILNVDGV 734
IMG GHRV +P R +K + ++FP + L A ++E+ I ++K N+ NVD
Sbjct: 245 IMGFGHRVYKTYDP--RAVFLKRVLQEHFPDSKLFRIASKLEEYIVSNKIKNIYPNVDLY 302
Query: 735 IAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMD 781
+V F +L FT LF R +G+ H ++
Sbjct: 303 SSVLFEELGFPRNMFT--------------ALFATARVVGWTAHVIE 335
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVS 628
+ ++G + F R+ P + +++ L++ ADH PA + A + V A DL S
Sbjct: 178 RDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAH--VVASTLSDLYS 235
Query: 629 SLVSGLLTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKG-KLIMGIGHRVKSIN 687
S+ + + + G N+ A++ E V K G +MG+GHRV
Sbjct: 236 SVAAAIAALKGPLHGGANEMAVRNYLEIGTPAKAKEIVEAATKPGGPKLMGVGHRVYKAY 295
Query: 688 NPDMRVKIIKEF----VLQNFPTTPLLNYALEVEKITTS----KKPNLILNVDGVIAVAF 739
+P R KI KEF V + L A +E+ S ++ L NVD +AF
Sbjct: 296 DP--RAKIFKEFSRDYVAKFGDPQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAF 353
Query: 740 VDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGH---YMDQKRL--KQGLYRHPW 794
+ FT +F + R +G++ H Y + R+ + Y P
Sbjct: 354 YYMGIPYEYFT--------------PIFAMSRVVGWVAHVLEYWENNRIFRPRACYIGP- 398
Query: 795 DDISYVLPEQ 804
D+ Y+ EQ
Sbjct: 399 HDLQYIPLEQ 408
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 596 LEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFS 653
++ +L++ DH PA + A +V A D+ SSL + L + G GGA +A QF
Sbjct: 173 MDKALILYTDHEVPASTTA--ALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFI 230
Query: 654 AAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVL----QNFPTTPL 709
D + F +++ + +MG GHRV +P R KI K+ L +N
Sbjct: 231 EIGDPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDP--RAKIFKKLALTLIERNADARRY 288
Query: 710 LNYALEVEK--ITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 767
A ++E+ I + N D + F L FT LF
Sbjct: 289 FEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYMFT--------------ALF 334
Query: 768 VLGRSIGFIGHYMDQKRLKQGLYR 791
L R++G++ H ++ + L R
Sbjct: 335 ALSRTLGWLAHIIEYVEEQHRLIR 358
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 22/204 (10%)
Query: 594 KFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQ 651
K ++ SL++ DH PA + A +V + D+ S +V+ L + G GGA +A Q
Sbjct: 172 KAMDASLILYTDHEVPASTTA--ALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQ 229
Query: 652 FSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRV--KIIKEFVLQNFPTTPL 709
F F ++ K +MG GHRV +P ++ + K F +N
Sbjct: 230 FVEIGSVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKY 289
Query: 710 LNYALEVEK--ITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 767
A +EK + T ++ N D + F L FT LF
Sbjct: 290 YEIAERIEKLGVDTFGSKHIYPNTDFYSGIVFYALGFPIYMFT--------------SLF 335
Query: 768 VLGRSIGFIGHYMDQKRLKQGLYR 791
L R +G++ H ++ + L R
Sbjct: 336 ALSRVLGWLAHIIEYVEEQHRLIR 359
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648
P + ++ +L++ A+HG S I DL S++ + + ++ G R GGA N+A
Sbjct: 168 PEQARLMDAALILHAEHGFNAS-TFTAIAAFSTETDLYSAITAAVASLKGPRHGGA-NEA 225
Query: 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRV-----KIIKEFVLQN 703
++ E+V E K + IMG+GHRV +P V +++ E +
Sbjct: 226 VMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHS 285
Query: 704 FPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAI 763
L E K+ + + NVD V + DL F+ E
Sbjct: 286 KEYQILKIVEEEAGKVLNPR--GIYPNVDFYSGVVYSDL-----GFSLE---------FF 329
Query: 764 NGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
+F + R G++GH ++ + L L R
Sbjct: 330 TPIFAVARISGWVGHILEYQELDNRLLR 357
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 593 CKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQ 651
K ++++L++ DH S ++V A DL SS+V+G+ + G GGA +A
Sbjct: 167 SKAMDVTLILHIDHEMNAS-TFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKM 225
Query: 652 FSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEF 699
F + +N + K + IMG GHRV +P R +I+K++
Sbjct: 226 FKEIGSPEKVNDYILNRLSNKQR-IMGFGHRVYKTYDP--RARILKQY 270
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 596 LEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFS 653
+ +L++ DH PA + A +V D+ S + + L + G GGA A QF
Sbjct: 178 MNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFD 235
Query: 654 AAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIK 697
D ++ F + + K +MG GHRV +P R KI K
Sbjct: 236 EIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDP--RAKIFK 277
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 596 LEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFS 653
+ +L++ DH PA + A +V D+ S + + L + G GGA A QF
Sbjct: 177 MNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFD 234
Query: 654 AAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIK 697
D ++ F + + K +MG GHRV +P R KI K
Sbjct: 235 EIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDP--RAKIFK 276
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 555 GQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614
GQ +Y P +D+ + + + ++ P V + + + ADH S +
Sbjct: 185 GQPFIY---PRNDLSYAENFLHXXFATPCEEYEVNPVVARAXDKIFTLHADHEQNASTS- 240
Query: 615 NTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQ-FSAAYDAGLIPMEFVNEMRKKG 673
+ +G + + + +G+ ++ G N+A ++ IP E+V+ + K
Sbjct: 241 TVRLAGSSGANPFACIAAGIASLWGPAHGGANEACLKXLEEIGSVDNIP-EYVDRAKDKD 299
Query: 674 K--LIMGIGHRVKSINNPDMRV------KIIKEFVLQNFPTTPLLNYALEVEKITTSKK- 724
+ G GHRV +P V +++KE +Q+ PLL+ A E+E+I S +
Sbjct: 300 DPFRLXGFGHRVYKNYDPRATVXRETCHEVLKELNIQD----PLLDVAXELERIALSDEY 355
Query: 725 ---PNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHY 779
L NVD + +L+ G + + +F + R+IG+I H+
Sbjct: 356 FVSKKLYPNVDFYSGI----ILKAIG----------IPVSXFTVIFAISRTIGWIAHW 399
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 599 SLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAAYDA 658
SL++ A+H S VC+ D+ S++ + + T+ G N+AA Y
Sbjct: 179 SLILYAEHEFNAS-TFAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAXDLIXLYKT 237
Query: 659 GLIPMEFVNEMRKK---GKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTP---LLNY 712
P E + +++K +LI G GH V +P R IIK + + P L +
Sbjct: 238 ---PSEAIAGIKRKLANKELIXGFGHAVYRERDP--RNAIIKSWAQKLAPNAADGYLFDI 292
Query: 713 ALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRS 772
+ +E +K L N+D A A+ L + FT +FV R
Sbjct: 293 SDAIENTXQDEK-KLFPNLDFYSATAYHFLNIPTKLFT--------------PIFVXSRV 337
Query: 773 IGFIGHYMDQKR 784
G+ H +Q++
Sbjct: 338 TGWCAHIFEQRK 349
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 579 LSLLWFQRQLP----PYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGL 634
LS+++ + P P + + + L++ ADH S + + G + + + +G+
Sbjct: 206 LSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTS-TVRLAGSTGANPFACIAAGI 264
Query: 635 LTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKK--GKLIMGIGHRVKSINNPDMR 692
+ G N+A ++ A F+ +++ K G +MG GHRV N D R
Sbjct: 265 AALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFGHRV--YKNFDPR 322
Query: 693 VKIIKEFVLQ-----NFPTTPLLNYALEVEKITTS 722
KI+++ + PLL+ A+E+EKI S
Sbjct: 323 AKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALS 357
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 594 KFLEMSLMVTADHGPAVSGAHNTIVCARAGK---DLVSSLVSGLLTI-GDRFGGALNDAA 649
K ++++L++ A+H S T+ G D S++++G+ + G GGA+ +A
Sbjct: 171 KAMDVALILYAEHEINAS----TLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAI 226
Query: 650 IQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPL 709
QF + F +++K K IMG GHRV +P R +I K++ L
Sbjct: 227 KQFMEIGSPEKVEEWFFKALQQKRK-IMGAGHRVYKTYDP--RARIFKKYA-SKLGDKKL 282
Query: 710 LNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLF 767
A +E++ K + +NVD + F + + + +F
Sbjct: 283 FEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMK--------------IPIELYTTIF 328
Query: 768 VLGRSIGFIGH---YMDQKRL 785
+GR G+ H Y+ R+
Sbjct: 329 AMGRIAGWTAHLAEYVSHNRI 349
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 23/195 (11%)
Query: 592 VCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQ 651
V E S+++ A+HG S +V + D+ S++ + + R G N+A +
Sbjct: 214 VVSAFEQSMILYAEHGFNASTFAARVVTS-TQSDIYSAVTGAIGALKGRLHGGANEAVMH 272
Query: 652 FSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLN 711
E++ + + IMG GHRV + D RV +K
Sbjct: 273 DMIEIGDPANAREWLRAKLARKEKIMGFGHRV--YRHGDSRVPTMKR------------- 317
Query: 712 YALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMG----AINGLF 767
+E++ T + L++ V+A + Y MG + +F
Sbjct: 318 ---ALERVGTVRDGQRWLDIYQVLAAEMASATGILPNLDFPTGPAYYLMGFDIASFTPIF 374
Query: 768 VLGRSIGFIGHYMDQ 782
V+ R G+ H M+Q
Sbjct: 375 VMSRITGWTAHIMEQ 389
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 594 KFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFS 653
K LE +++ +HG S + V DLVS++ + L T+ G A +
Sbjct: 165 KALETYMILATEHGMNAS-TFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKML 223
Query: 654 AAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYA 713
++ E +KG+ +MG GHRV +P R + +++ + L+ A
Sbjct: 224 EDIGEKEHAEAYLKEKLEKGERLMGFGHRVYKTKDP--RAEALRQKAEEVAGNDRDLDLA 281
Query: 714 LEVE 717
L VE
Sbjct: 282 LHVE 285
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 277 NFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA----TV 332
N SL ++S T FP AE IP T+KL+ +AKE + +IG +
Sbjct: 37 NIVSLPECFNSPYGTTYFPDY------AEKIPGESTQKLSEVAKESSIYLIGGSIPEEDA 90
Query: 333 GGLKPGCFKIGNTGGMMDNILHSKLYR-----PGSVAY 365
G L C G G ++ + H K++ PG + +
Sbjct: 91 GKLYNTCSVFGPDGSLL--VKHRKIHLFDIDVPGKITF 126
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 747 GSFTREEAQEY-VEMGAINGLFVLGRSIGFIG 777
G+ TREEA++Y V+ G +GL++L +S ++G
Sbjct: 19 GNITREEAEDYLVQGGMSDGLYLLRQSRNYLG 50
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 747 GSFTREEAQEY-VEMGAINGLFVLGRSIGFIG 777
G+ TREEA++Y V+ G +GL++L +S ++G
Sbjct: 18 GNITREEAEDYLVQGGMSDGLYLLRQSRNYLG 49
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 747 GSFTREEAQEY-VEMGAINGLFVLGRSIGFIG 777
G+ TREEA++Y V+ G +GL++L +S ++G
Sbjct: 10 GNITREEAEDYLVQGGMSDGLYLLRQSRNYLG 41
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 176 LGKKEIPSETSADGATANFLLPGGQ-EQTKAIVWGMQ 211
+G KEIP + GA +LPGG EQT ++ GMQ
Sbjct: 37 VGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQ 73
>pdb|1EAP|B Chain B, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 216
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 329 PATVGGLKPGCFKIGNTGGMMDNI-LHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGV 387
P +V L PGC G+T G + K Y P SV SGG+S+ ++ + +G+
Sbjct: 124 PPSVYPLAPGC---GDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSGL 180
Query: 388 Y---EGVAIGGDRYPGTT 402
Y V + G +P T
Sbjct: 181 YTMSSSVTVPGGGWPSAT 198
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 240 TGDHKLKFY--W-GHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQ 296
T D ++FY W GH + L P Y+++ +K++ D +V +A D E GFP
Sbjct: 25 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPT 84
Query: 297 IRSIAIIAEGIP 308
I+ A+G P
Sbjct: 85 IKLYPAGAKGQP 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,047,903
Number of Sequences: 62578
Number of extensions: 942040
Number of successful extensions: 2254
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 52
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)