Query psy16953
Match_columns 806
No_of_seqs 570 out of 3099
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02522 ATP citrate (pro-S)-l 100.0 2E-144 5E-149 1241.5 55.9 602 198-800 6-607 (608)
2 KOG1254|consensus 100.0 6E-103 1E-107 846.2 25.6 595 198-800 5-599 (600)
3 PRK05678 succinyl-CoA syntheta 100.0 3.9E-61 8.4E-66 515.4 31.1 278 199-510 5-291 (291)
4 TIGR01019 sucCoAalpha succinyl 100.0 1E-59 2.2E-64 503.3 29.2 269 199-506 3-285 (286)
5 TIGR02717 AcCoA-syn-alpha acet 100.0 6.9E-59 1.5E-63 528.6 26.6 271 198-508 4-289 (447)
6 PTZ00187 succinyl-CoA syntheta 100.0 2.3E-57 4.9E-62 488.0 30.6 282 199-510 26-316 (317)
7 PLN00125 Succinyl-CoA ligase [ 100.0 1.5E-57 3.2E-62 488.3 28.7 272 199-509 9-296 (300)
8 COG0372 GltA Citrate synthase 100.0 5.9E-57 1.3E-61 496.2 17.0 224 561-805 151-382 (390)
9 PRK06224 citrate synthase; Pro 100.0 5.9E-53 1.3E-57 448.4 17.4 245 542-804 5-259 (263)
10 cd06108 Ec2MCS_like Escherichi 100.0 8.9E-53 1.9E-57 463.0 17.6 250 523-804 82-357 (363)
11 cd06116 CaCS_like Chloroflexus 100.0 1.5E-52 3.3E-57 464.2 18.1 256 519-804 84-378 (384)
12 cd06101 citrate_synt Citrate s 100.0 1.8E-52 4E-57 444.3 17.7 234 544-795 7-264 (265)
13 PRK12351 methylcitrate synthas 100.0 1.1E-52 2.5E-57 463.9 16.6 250 523-804 91-369 (378)
14 cd06115 AthCS_per_like Arabido 100.0 1.4E-52 3E-57 467.1 16.3 222 561-804 170-405 (410)
15 PRK14036 citrate synthase; Pro 100.0 3.2E-52 7E-57 461.1 17.0 213 570-804 149-367 (377)
16 cd06102 citrate_synt_like_2 Ci 100.0 6E-52 1.3E-56 441.5 17.5 232 544-801 19-282 (282)
17 cd06117 Ec2MCS_like_1 Subgroup 100.0 4.2E-52 9.1E-57 458.5 16.8 211 571-804 146-360 (366)
18 TIGR01798 cit_synth_I citrate 100.0 1.4E-51 3E-56 459.3 20.7 222 561-804 170-409 (412)
19 PRK14034 citrate synthase; Pro 100.0 9.1E-52 2E-56 456.3 18.4 220 561-804 139-362 (372)
20 PRK14035 citrate synthase; Pro 100.0 5.6E-52 1.2E-56 457.9 16.5 220 561-804 139-362 (371)
21 PRK14037 citrate synthase; Pro 100.0 2.4E-51 5.2E-56 454.2 18.9 222 561-804 139-368 (377)
22 cd06112 citrate_synt_like_1_1 100.0 2.2E-51 4.8E-56 454.6 17.6 221 561-804 140-367 (373)
23 cd06109 BsCS-I_like Bacillus s 100.0 1.7E-51 3.8E-56 451.5 16.3 210 570-801 133-349 (349)
24 PRK12350 citrate synthase 2; P 100.0 4.4E-51 9.6E-56 446.7 19.1 211 570-804 129-349 (353)
25 cd06107 EcCS_AthCS-per_like Es 100.0 1.6E-51 3.6E-56 455.7 15.7 219 561-801 150-382 (382)
26 COG0074 SucD Succinyl-CoA synt 100.0 1.1E-49 2.3E-54 413.3 27.8 283 199-510 5-292 (293)
27 cd06111 DsCS_like Cold-active 100.0 8.8E-51 1.9E-55 448.3 16.9 212 570-804 144-359 (362)
28 TIGR01793 cit_synth_euk citrat 100.0 7.7E-51 1.7E-55 453.6 16.2 260 502-794 121-421 (427)
29 PRK05614 gltA type II citrate 100.0 2.7E-50 5.8E-55 450.4 19.1 220 561-802 183-419 (419)
30 PRK14032 citrate synthase; Pro 100.0 2.3E-50 4.9E-55 453.7 17.9 214 569-802 200-437 (447)
31 PLN02456 citrate synthase 100.0 2.7E-50 5.9E-55 453.4 18.1 221 562-804 210-445 (455)
32 PRK09569 type I citrate syntha 100.0 1.4E-50 3.1E-55 453.1 15.3 211 570-802 201-426 (437)
33 cd06106 ScCit3_like Saccharomy 100.0 3E-50 6.5E-55 449.5 16.9 208 570-794 199-422 (428)
34 PRK12349 citrate synthase 3; P 100.0 2.5E-50 5.4E-55 445.7 15.6 214 570-805 150-367 (369)
35 cd06105 ScCit1-2_like Saccharo 100.0 3E-50 6.6E-55 449.3 16.0 215 561-794 190-418 (427)
36 cd06114 EcCS_like Escherichia 100.0 4.5E-50 9.8E-55 447.1 17.1 218 562-801 166-400 (400)
37 cd06099 CS_ACL-C_CCL Citrate s 100.0 7.8E-50 1.7E-54 412.0 17.4 205 574-795 1-212 (213)
38 PRK14033 citrate synthase; Pro 100.0 5.3E-50 1.2E-54 443.6 16.7 212 570-804 154-369 (375)
39 TIGR01800 cit_synth_II 2-methy 100.0 6.7E-50 1.5E-54 442.8 17.4 219 562-804 137-359 (368)
40 cd06103 ScCS-like Saccharomyce 100.0 1.7E-49 3.7E-54 443.7 16.3 215 562-795 193-421 (426)
41 cd06110 BSuCS-II_like Bacillus 100.0 1.1E-48 2.3E-53 432.1 17.7 209 570-801 144-356 (356)
42 cd06113 citrate_synt_like_1_2 100.0 8.3E-49 1.8E-53 437.7 16.7 212 570-801 171-406 (406)
43 cd06118 citrate_synt_like_1 Ci 100.0 1E-48 2.2E-53 432.8 17.1 208 570-795 144-357 (358)
44 COG1042 Acyl-CoA synthetase (N 100.0 4.9E-48 1.1E-52 447.1 22.5 270 199-508 8-293 (598)
45 PF00285 Citrate_synt: Citrate 100.0 3.9E-49 8.3E-54 436.4 12.1 213 561-792 136-356 (356)
46 cd06100 CCL_ACL-C Citryl-CoA l 100.0 1.2E-47 2.7E-52 399.9 17.6 220 562-799 1-227 (227)
47 KOG1255|consensus 100.0 1E-43 2.3E-48 356.9 23.9 283 199-510 35-326 (329)
48 KOG2617|consensus 100.0 1E-39 2.2E-44 348.9 14.1 273 480-794 128-440 (458)
49 PLN02235 ATP citrate (pro-S)-l 100.0 2.1E-38 4.6E-43 350.6 15.4 177 1-177 1-417 (423)
50 PRK06091 membrane protein FdrA 100.0 6.9E-37 1.5E-41 346.5 21.7 206 256-507 105-316 (555)
51 PF13607 Succ_CoA_lig: Succiny 100.0 2.9E-37 6.4E-42 297.5 10.9 136 360-505 1-137 (138)
52 COG0045 SucC Succinyl-CoA synt 100.0 1.9E-31 4E-36 288.2 14.0 78 4-89 1-78 (387)
53 PLN00124 succinyl-CoA ligase [ 99.9 4.1E-26 8.9E-31 256.2 14.1 79 3-90 27-114 (422)
54 PRK14046 malate--CoA ligase su 99.8 4.7E-19 1E-23 198.9 14.1 79 4-90 1-79 (392)
55 PF13380 CoA_binding_2: CoA bi 99.8 2.2E-19 4.9E-24 168.7 7.4 108 203-337 1-116 (116)
56 KOG1447|consensus 99.8 8.6E-19 1.9E-23 180.0 11.9 80 5-92 21-107 (412)
57 KOG2799|consensus 99.7 1E-18 2.2E-23 185.8 6.8 159 5-186 24-422 (434)
58 PF08442 ATP-grasp_2: ATP-gras 99.7 1.3E-18 2.7E-23 178.4 5.3 80 5-92 1-80 (202)
59 KOG1254|consensus 99.7 3E-18 6.4E-23 188.0 0.4 90 93-183 408-497 (600)
60 TIGR01016 sucCoAbeta succinyl- 99.7 5.5E-16 1.2E-20 174.3 14.5 78 4-89 1-78 (386)
61 PRK00696 sucC succinyl-CoA syn 99.6 2.9E-14 6.3E-19 160.6 19.8 81 4-92 1-81 (388)
62 PF00549 Ligase_CoA: CoA-ligas 99.1 6.1E-10 1.3E-14 109.5 9.9 122 366-490 1-152 (153)
63 COG1832 Predicted CoA-binding 98.9 7.5E-10 1.6E-14 105.2 5.0 110 200-334 14-131 (140)
64 PF02629 CoA_binding: CoA bind 98.2 3.5E-06 7.5E-11 76.7 6.9 89 200-306 1-96 (96)
65 TIGR02717 AcCoA-syn-alpha acet 97.9 0.0029 6.2E-08 73.2 24.8 253 201-507 149-444 (447)
66 PF00549 Ligase_CoA: CoA-ligas 97.9 1.7E-05 3.7E-10 78.3 5.1 86 77-176 58-151 (153)
67 TIGR01016 sucCoAbeta succinyl- 97.2 0.0022 4.7E-08 72.8 11.5 120 359-503 255-381 (386)
68 PRK00696 sucC succinyl-CoA syn 97.2 0.0014 3.1E-08 74.3 9.8 89 75-178 293-384 (388)
69 PRK12349 citrate synthase 3; P 97.1 0.0025 5.3E-08 71.9 10.6 93 542-638 11-105 (369)
70 PRK14046 malate--CoA ligase su 96.9 0.0054 1.2E-07 69.8 11.4 120 359-503 255-381 (392)
71 cd06118 citrate_synt_like_1 Ci 96.9 0.0055 1.2E-07 68.9 11.0 91 544-638 7-99 (358)
72 PRK14036 citrate synthase; Pro 96.7 0.0046 9.9E-08 69.9 8.8 98 536-638 5-104 (377)
73 PF13549 ATP-grasp_5: ATP-gras 96.6 0.0011 2.3E-08 69.7 2.4 77 3-88 7-85 (222)
74 PF01113 DapB_N: Dihydrodipico 96.5 0.0047 1E-07 58.9 6.2 114 204-330 2-123 (124)
75 PLN00124 succinyl-CoA ligase [ 96.5 0.024 5.2E-07 65.0 12.9 118 359-501 290-414 (422)
76 TIGR00036 dapB dihydrodipicoli 96.5 0.014 3.1E-07 62.9 10.4 72 255-331 55-127 (266)
77 COG0045 SucC Succinyl-CoA synt 96.5 0.033 7.2E-07 62.2 12.8 121 359-504 254-381 (387)
78 TIGR01800 cit_synth_II 2-methy 96.4 0.011 2.3E-07 66.8 9.2 62 541-603 4-67 (368)
79 cd06112 citrate_synt_like_1_1 96.4 0.013 2.8E-07 66.3 9.8 96 540-639 5-102 (373)
80 PRK14032 citrate synthase; Pro 96.4 0.012 2.6E-07 67.8 9.7 92 544-640 42-152 (447)
81 PRK14037 citrate synthase; Pro 96.4 0.014 3E-07 66.1 9.8 95 540-638 8-104 (377)
82 cd06109 BsCS-I_like Bacillus s 96.2 0.025 5.5E-07 63.4 10.5 107 542-655 5-113 (349)
83 cd06110 BSuCS-II_like Bacillus 96.2 0.02 4.3E-07 64.4 9.7 92 542-637 5-98 (356)
84 cd06108 Ec2MCS_like Escherichi 96.2 0.026 5.7E-07 63.5 10.5 108 544-655 7-121 (363)
85 PRK06091 membrane protein FdrA 96.2 4.1 8.8E-05 48.3 29.9 345 70-508 101-494 (555)
86 PF01071 GARS_A: Phosphoribosy 96.1 0.0071 1.5E-07 62.2 4.9 67 10-89 5-72 (194)
87 PRK12351 methylcitrate synthas 96.0 0.033 7.1E-07 63.1 10.2 95 541-639 13-109 (378)
88 cd06111 DsCS_like Cold-active 96.0 0.025 5.5E-07 63.7 9.3 91 544-638 7-99 (362)
89 cd06113 citrate_synt_like_1_2 96.0 0.0049 1.1E-07 70.3 3.6 81 557-641 37-123 (406)
90 cd06115 AthCS_per_like Arabido 95.9 0.043 9.3E-07 62.7 10.4 94 541-638 30-125 (410)
91 cd06116 CaCS_like Chloroflexus 95.8 0.045 9.7E-07 62.1 10.0 94 541-638 10-105 (384)
92 PRK14035 citrate synthase; Pro 95.7 0.036 7.7E-07 62.6 9.0 92 542-638 9-102 (371)
93 PRK14033 citrate synthase; Pro 95.7 0.041 8.9E-07 62.3 9.5 94 541-638 14-109 (375)
94 cd06117 Ec2MCS_like_1 Subgroup 95.6 0.065 1.4E-06 60.5 10.3 91 544-638 7-99 (366)
95 TIGR01798 cit_synth_I citrate 95.4 0.066 1.4E-06 61.2 9.6 97 537-638 34-132 (412)
96 PRK09569 type I citrate syntha 95.3 0.098 2.1E-06 60.3 10.7 97 537-637 40-145 (437)
97 PRK14034 citrate synthase; Pro 95.2 0.086 1.9E-06 59.6 9.8 91 544-638 11-102 (372)
98 PLN02456 citrate synthase 95.2 0.067 1.4E-06 61.9 8.9 95 540-638 68-164 (455)
99 cd06105 ScCit1-2_like Saccharo 95.1 0.12 2.5E-06 59.5 10.4 95 540-638 40-144 (427)
100 cd06107 EcCS_AthCS-per_like Es 95.1 0.11 2.3E-06 59.1 10.0 95 541-639 10-106 (382)
101 cd06103 ScCS-like Saccharomyce 95.0 0.22 4.7E-06 57.3 12.3 100 535-639 36-145 (426)
102 PRK00048 dihydrodipicolinate r 95.0 0.15 3.2E-06 54.8 10.4 72 254-331 46-117 (257)
103 COG0151 PurD Phosphoribosylami 94.9 0.049 1.1E-06 61.6 6.6 69 10-91 106-174 (428)
104 COG0289 DapB Dihydrodipicolina 94.9 0.18 4E-06 54.0 10.4 121 203-331 3-126 (266)
105 PLN02235 ATP citrate (pro-S)-l 94.8 0.23 4.9E-06 56.8 11.7 129 359-508 268-417 (423)
106 PRK05614 gltA type II citrate 94.7 0.14 3E-06 58.8 9.8 94 541-638 50-145 (419)
107 PF01408 GFO_IDH_MocA: Oxidore 94.7 0.12 2.7E-06 47.9 7.7 69 254-326 46-116 (120)
108 cd06114 EcCS_like Escherichia 94.5 0.16 3.5E-06 58.0 9.6 95 537-638 29-127 (400)
109 cd06106 ScCit3_like Saccharomy 94.2 0.25 5.4E-06 56.9 10.2 100 536-639 37-145 (428)
110 PLN02775 Probable dihydrodipic 93.7 0.55 1.2E-05 51.2 11.2 116 199-331 8-136 (286)
111 TIGR01793 cit_synth_euk citrat 93.5 0.08 1.7E-06 60.8 4.6 98 537-638 41-147 (427)
112 PRK00885 phosphoribosylamine-- 92.9 0.27 5.8E-06 56.3 7.7 68 9-89 104-171 (420)
113 PRK13790 phosphoribosylamine-- 92.8 0.29 6.4E-06 55.5 7.9 69 8-89 68-136 (379)
114 PF00285 Citrate_synt: Citrate 92.7 0.061 1.3E-06 60.5 2.1 90 542-637 4-97 (356)
115 PF03446 NAD_binding_2: NAD bi 92.6 0.28 6.1E-06 48.7 6.6 109 203-329 2-118 (163)
116 PRK13304 L-aspartate dehydroge 92.3 0.39 8.4E-06 51.8 7.6 69 255-328 48-118 (265)
117 PRK13789 phosphoribosylamine-- 92.1 0.38 8.3E-06 55.5 7.7 69 7-88 108-176 (426)
118 PRK13303 L-aspartate dehydroge 92.1 0.61 1.3E-05 50.4 8.8 68 255-327 48-117 (265)
119 TIGR02130 dapB_plant dihydrodi 91.1 1.3 2.9E-05 48.0 10.1 108 204-331 2-125 (275)
120 COG2344 AT-rich DNA-binding pr 90.7 0.82 1.8E-05 46.7 7.4 94 199-305 81-179 (211)
121 COG0673 MviM Predicted dehydro 90.5 0.79 1.7E-05 50.4 7.9 74 252-330 48-126 (342)
122 TIGR03855 NAD_NadX aspartate d 90.3 0.89 1.9E-05 48.1 7.7 75 255-333 23-100 (229)
123 PLN02257 phosphoribosylamine-- 90.2 0.45 9.8E-06 55.0 5.9 69 8-89 103-171 (434)
124 TIGR02068 cya_phycin_syn cyano 89.5 0.74 1.6E-05 57.8 7.4 68 8-88 214-282 (864)
125 TIGR00877 purD phosphoribosyla 89.0 0.58 1.3E-05 53.6 5.5 69 9-90 106-175 (423)
126 TIGR01761 thiaz-red thiazoliny 88.5 1.5 3.3E-05 49.2 8.3 70 253-327 47-119 (343)
127 PRK14016 cyanophycin synthetas 88.2 1.1 2.4E-05 55.2 7.5 67 9-88 216-283 (727)
128 PF02844 GARS_N: Phosphoribosy 88.1 1.3 2.9E-05 40.9 6.2 86 204-330 2-93 (100)
129 PTZ00142 6-phosphogluconate de 86.9 3.5 7.5E-05 48.3 10.2 115 203-330 2-126 (470)
130 PRK01372 ddl D-alanine--D-alan 86.9 1.3 2.9E-05 48.1 6.5 68 8-88 99-166 (304)
131 cd07018 S49_SppA_67K_type Sign 86.7 1.5 3.3E-05 46.0 6.5 51 402-452 33-87 (222)
132 COG2084 MmsB 3-hydroxyisobutyr 86.5 4.5 9.8E-05 44.3 10.2 110 203-327 1-117 (286)
133 PRK09599 6-phosphogluconate de 86.1 2.3 5E-05 46.6 7.8 109 204-327 2-116 (301)
134 PRK06395 phosphoribosylamine-- 85.8 1.6 3.4E-05 50.6 6.7 68 9-88 107-178 (435)
135 PRK13302 putative L-aspartate 85.2 1.8 4E-05 46.9 6.5 73 256-334 55-128 (271)
136 PRK13301 putative L-aspartate 84.9 5.2 0.00011 43.3 9.6 114 202-329 2-120 (267)
137 PRK12350 citrate synthase 2; P 84.6 0.7 1.5E-05 52.0 3.0 49 542-591 7-57 (353)
138 cd07022 S49_Sppa_36K_type Sign 84.4 2 4.4E-05 44.7 6.2 55 401-455 28-85 (214)
139 PRK12490 6-phosphogluconate de 84.0 3.8 8.2E-05 44.9 8.4 107 204-327 2-116 (299)
140 TIGR01745 asd_gamma aspartate- 83.8 4.4 9.5E-05 45.9 8.8 116 204-334 2-137 (366)
141 PRK02471 bifunctional glutamat 82.9 2.5 5.4E-05 52.3 7.0 82 9-99 490-584 (752)
142 PRK05479 ketol-acid reductoiso 81.8 2.7 5.8E-05 47.0 6.1 124 201-343 16-144 (330)
143 PRK11579 putative oxidoreducta 81.4 4.7 0.0001 44.9 8.0 68 256-326 50-118 (346)
144 PLN02350 phosphogluconate dehy 81.4 7.7 0.00017 45.8 10.0 117 201-330 5-132 (493)
145 TIGR01161 purK phosphoribosyla 80.2 3.3 7.2E-05 46.2 6.3 67 9-88 100-167 (352)
146 cd00394 Clp_protease_like Case 80.0 3.6 7.7E-05 40.5 5.8 53 402-456 15-70 (161)
147 COG1042 Acyl-CoA synthetase (N 80.0 3.7 7.9E-05 49.5 6.8 178 255-469 309-490 (598)
148 COG0616 SppA Periplasmic serin 79.9 3.2 6.9E-05 46.1 5.9 79 362-456 60-141 (317)
149 TIGR01435 glu_cys_lig_rel glut 79.8 3.7 8.1E-05 50.5 6.9 69 9-86 477-545 (737)
150 PRK09288 purT phosphoribosylgl 79.6 3.2 6.9E-05 46.9 5.9 65 11-88 117-182 (395)
151 TIGR00872 gnd_rel 6-phosphoglu 79.1 5.8 0.00013 43.4 7.6 107 204-328 2-116 (298)
152 PRK15059 tartronate semialdehy 78.7 9 0.0002 41.9 8.9 108 204-328 2-116 (292)
153 PRK10446 ribosomal protein S6 78.6 5.5 0.00012 43.5 7.2 67 9-87 101-167 (300)
154 TIGR03103 trio_acet_GNAT GNAT- 78.6 4.6 0.0001 48.2 7.1 67 8-88 298-365 (547)
155 COG1810 Uncharacterized protei 78.5 19 0.00042 37.8 10.6 117 203-338 2-121 (224)
156 TIGR00706 SppA_dom signal pept 78.4 5.4 0.00012 41.3 6.7 53 403-455 18-73 (207)
157 PF13535 ATP-grasp_4: ATP-gras 77.5 3.6 7.9E-05 40.5 5.0 67 9-88 6-72 (184)
158 cd07014 S49_SppA Signal peptid 77.4 4.4 9.5E-05 40.8 5.6 55 402-456 26-84 (177)
159 PRK10206 putative oxidoreducta 77.4 7 0.00015 43.8 7.7 68 256-326 50-118 (344)
160 TIGR01501 MthylAspMutase methy 77.1 8.3 0.00018 37.6 7.1 70 262-331 45-119 (134)
161 PRK05784 phosphoribosylamine-- 76.9 4 8.7E-05 48.0 5.9 58 8-78 110-167 (486)
162 TIGR00514 accC acetyl-CoA carb 76.8 4 8.7E-05 47.3 5.8 68 9-87 117-184 (449)
163 TIGR02144 LysX_arch Lysine bio 76.1 7.1 0.00015 41.8 7.1 62 11-85 91-152 (280)
164 COG0136 Asd Aspartate-semialde 76.1 12 0.00027 41.7 8.9 118 203-334 2-136 (334)
165 PF08443 RimK: RimK-like ATP-g 75.7 1.5 3.2E-05 44.7 1.6 64 11-86 7-70 (190)
166 cd07023 S49_Sppa_N_C Signal pe 75.7 5.2 0.00011 41.4 5.7 54 402-455 21-78 (208)
167 COG2185 Sbm Methylmalonyl-CoA 75.4 9.3 0.0002 37.6 6.9 70 256-331 46-124 (143)
168 cd07019 S49_SppA_1 Signal pept 75.0 5.2 0.00011 41.6 5.5 54 402-455 25-82 (211)
169 TIGR01692 HIBADH 3-hydroxyisob 75.0 9.2 0.0002 41.6 7.7 100 213-328 10-113 (288)
170 PLN02712 arogenate dehydrogena 75.0 15 0.00034 44.9 10.3 76 201-293 368-446 (667)
171 PF02593 dTMP_synthase: Thymid 74.9 8.5 0.00018 40.5 7.0 75 262-337 42-117 (217)
172 PRK06111 acetyl-CoA carboxylas 74.2 5.2 0.00011 46.1 5.8 68 9-87 117-184 (450)
173 PLN02819 lysine-ketoglutarate 74.0 9.4 0.0002 48.9 8.3 71 259-338 636-708 (1042)
174 PRK12767 carbamoyl phosphate s 72.4 7.1 0.00015 42.8 6.1 65 11-88 115-181 (326)
175 PRK11559 garR tartronate semia 71.9 16 0.00034 39.7 8.6 109 203-327 3-118 (296)
176 TIGR00768 rimK_fam alpha-L-glu 71.5 11 0.00023 40.0 7.1 63 12-87 93-155 (277)
177 KOG2741|consensus 71.0 13 0.00028 41.6 7.5 69 256-327 58-127 (351)
178 PRK07206 hypothetical protein; 70.9 7.5 0.00016 44.3 6.0 65 12-89 113-180 (416)
179 COG0372 GltA Citrate synthase 70.5 5.1 0.00011 45.8 4.4 64 535-600 16-81 (390)
180 TIGR00705 SppA_67K signal pept 70.2 6.7 0.00014 47.3 5.6 82 359-456 306-391 (584)
181 TIGR01142 purT phosphoribosylg 69.8 8 0.00017 43.5 5.9 66 10-88 103-169 (380)
182 TIGR00873 gnd 6-phosphoglucona 69.8 22 0.00048 41.7 9.6 111 205-330 2-123 (467)
183 PRK15461 NADH-dependent gamma- 69.4 18 0.00038 39.6 8.3 109 203-327 2-117 (296)
184 PRK09287 6-phosphogluconate de 69.3 28 0.0006 40.8 10.3 106 211-330 2-114 (459)
185 TIGR01205 D_ala_D_alaTIGR D-al 69.1 9 0.0002 41.8 6.0 72 7-88 105-179 (315)
186 PRK10949 protease 4; Provision 69.1 7.6 0.00016 47.1 5.8 81 359-455 324-408 (618)
187 cd06335 PBP1_ABC_ligand_bindin 68.9 60 0.0013 35.8 12.5 167 270-447 41-223 (347)
188 KOG1447|consensus 68.9 15 0.00033 39.5 7.2 95 359-455 281-380 (412)
189 cd06558 crotonase-like Crotona 68.7 14 0.00031 37.1 7.0 82 442-540 92-175 (195)
190 PRK12833 acetyl-CoA carboxylas 67.5 9.1 0.0002 44.7 5.9 68 8-86 119-186 (467)
191 PRK08591 acetyl-CoA carboxylas 66.9 9.5 0.00021 44.1 5.9 68 9-87 117-184 (451)
192 PRK14618 NAD(P)H-dependent gly 66.4 24 0.00052 39.0 8.7 111 202-330 4-136 (328)
193 COG1712 Predicted dinucleotide 66.3 33 0.00071 36.5 8.9 71 255-329 47-118 (255)
194 TIGR00640 acid_CoA_mut_C methy 65.9 19 0.0004 34.9 6.7 64 262-331 46-114 (132)
195 TIGR01369 CPSaseII_lrg carbamo 65.5 14 0.0003 47.8 7.4 64 12-88 674-737 (1050)
196 PRK08462 biotin carboxylase; V 65.5 11 0.00024 43.6 6.0 67 9-86 119-185 (445)
197 TIGR01505 tartro_sem_red 2-hyd 65.5 22 0.00049 38.5 8.1 109 204-328 1-116 (291)
198 KOG0237|consensus 65.5 9.5 0.00021 45.2 5.3 81 10-108 111-191 (788)
199 PRK12815 carB carbamoyl phosph 65.4 9 0.0002 49.5 5.7 65 12-89 133-197 (1068)
200 PTZ00431 pyrroline carboxylate 65.2 17 0.00037 38.9 7.0 95 202-315 3-101 (260)
201 PRK05472 redox-sensing transcr 64.9 21 0.00045 37.1 7.4 88 201-305 83-179 (213)
202 PF02786 CPSase_L_D2: Carbamoy 64.5 12 0.00026 39.2 5.5 67 10-87 4-70 (211)
203 PRK06019 phosphoribosylaminoim 63.8 13 0.00028 42.1 6.0 64 11-87 104-168 (372)
204 PF13460 NAD_binding_10: NADH( 63.7 20 0.00043 35.4 6.7 86 205-305 1-98 (183)
205 PLN02735 carbamoyl-phosphate s 63.6 16 0.00035 47.4 7.5 66 10-88 705-770 (1102)
206 cd07373 2A5CPDO_A The alpha su 63.6 2.2E+02 0.0048 30.8 16.2 148 367-535 87-241 (271)
207 PLN02948 phosphoribosylaminoim 63.3 14 0.00031 44.4 6.6 67 9-88 123-190 (577)
208 PRK08654 pyruvate carboxylase 62.5 13 0.00028 44.0 5.8 69 9-88 117-185 (499)
209 TIGR03189 dienoyl_CoA_hyt cycl 62.1 16 0.00036 39.0 6.2 83 441-540 87-170 (251)
210 PF07991 IlvN: Acetohydroxy ac 61.9 15 0.00032 37.1 5.3 91 201-309 3-99 (165)
211 PRK05294 carB carbamoyl phosph 61.9 11 0.00025 48.6 5.7 65 12-89 674-738 (1066)
212 PLN02256 arogenate dehydrogena 61.8 30 0.00065 38.2 8.3 76 201-293 35-113 (304)
213 PRK06072 enoyl-CoA hydratase; 61.6 17 0.00038 38.6 6.2 83 442-541 88-171 (248)
214 cd06347 PBP1_ABC_ligand_bindin 61.5 1.6E+02 0.0034 31.7 13.9 151 287-447 57-221 (334)
215 PRK07634 pyrroline-5-carboxyla 60.8 26 0.00057 36.7 7.4 115 202-331 4-124 (245)
216 cd06367 PBP1_iGluR_NMDA N-term 60.1 2.3E+02 0.0051 31.2 15.2 159 281-453 48-230 (362)
217 KOG2617|consensus 60.0 23 0.00051 40.2 6.9 96 544-645 70-177 (458)
218 PRK05784 phosphoribosylamine-- 59.8 31 0.00067 40.7 8.4 48 283-333 56-103 (486)
219 TIGR03649 ergot_EASG ergot alk 59.8 57 0.0012 34.8 9.9 22 284-305 84-105 (285)
220 PRK07511 enoyl-CoA hydratase; 59.8 16 0.00034 39.2 5.5 83 441-540 96-180 (260)
221 cd01485 E1-1_like Ubiquitin ac 59.8 65 0.0014 33.2 9.9 118 201-335 18-150 (198)
222 PRK07178 pyruvate carboxylase 59.6 16 0.00035 42.7 6.0 67 9-86 116-182 (472)
223 TIGR00705 SppA_67K signal pept 59.3 12 0.00026 45.1 5.0 91 402-492 80-181 (584)
224 COG1086 Predicted nucleoside-d 58.8 1.4E+02 0.0031 35.9 13.3 182 86-307 152-378 (588)
225 cd01492 Aos1_SUMO Ubiquitin ac 58.7 58 0.0012 33.6 9.2 118 201-335 20-147 (197)
226 PRK06598 aspartate-semialdehyd 58.6 54 0.0012 37.3 9.7 62 268-333 64-137 (369)
227 TIGR01470 cysG_Nterm siroheme 58.5 1E+02 0.0022 32.1 11.1 87 201-326 8-97 (205)
228 cd01491 Ube1_repeat1 Ubiquitin 58.2 37 0.00081 37.3 8.1 113 201-336 18-143 (286)
229 PLN02858 fructose-bisphosphate 58.2 33 0.00072 45.6 9.0 118 201-334 3-129 (1378)
230 TIGR01369 CPSaseII_lrg carbamo 58.1 15 0.00033 47.4 5.9 65 12-89 132-196 (1050)
231 PRK06545 prephenate dehydrogen 58.1 43 0.00094 37.7 8.9 110 204-329 2-118 (359)
232 PRK02186 argininosuccinate lya 57.4 16 0.00035 46.2 5.9 66 10-88 110-175 (887)
233 PRK06142 enoyl-CoA hydratase; 57.4 30 0.00064 37.3 7.2 81 441-540 107-191 (272)
234 PRK06023 enoyl-CoA hydratase; 57.3 29 0.00063 36.9 7.1 16 441-456 95-110 (251)
235 cd02072 Glm_B12_BD B12 binding 57.1 34 0.00074 33.1 6.7 70 262-331 43-117 (128)
236 PRK14570 D-alanyl-alanine synt 56.7 19 0.00041 40.8 5.8 73 7-89 129-205 (364)
237 PRK06688 enoyl-CoA hydratase; 56.5 32 0.00069 36.7 7.2 83 441-540 94-178 (259)
238 cd06338 PBP1_ABC_ligand_bindin 56.3 1.5E+02 0.0032 32.3 12.7 156 284-451 59-230 (345)
239 COG0439 AccC Biotin carboxylas 56.1 19 0.00042 41.9 5.7 71 9-90 117-187 (449)
240 PRK10949 protease 4; Provision 55.7 15 0.00032 44.6 4.9 88 402-492 99-200 (618)
241 PLN02712 arogenate dehydrogena 55.6 53 0.0011 40.4 9.7 92 201-309 51-147 (667)
242 PRK05586 biotin carboxylase; V 55.6 21 0.00045 41.4 6.0 67 9-86 117-183 (447)
243 PRK14569 D-alanyl-alanine synt 55.5 21 0.00045 39.1 5.6 66 7-88 98-163 (296)
244 PRK05864 enoyl-CoA hydratase; 55.4 26 0.00057 37.9 6.4 81 441-540 107-192 (276)
245 TIGR02712 urea_carbox urea car 55.3 18 0.0004 47.2 6.0 66 9-87 116-182 (1201)
246 PRK13789 phosphoribosylamine-- 55.1 42 0.00092 38.8 8.4 46 284-332 56-101 (426)
247 PLN02383 aspartate semialdehyd 55.0 68 0.0015 36.1 9.7 115 201-332 6-140 (344)
248 PRK07827 enoyl-CoA hydratase; 54.9 35 0.00075 36.5 7.2 84 441-541 99-183 (260)
249 TIGR01296 asd_B aspartate-semi 54.9 41 0.00089 37.7 8.0 83 204-298 1-87 (339)
250 cd07020 Clp_protease_NfeD_1 No 54.5 33 0.00072 34.9 6.6 51 403-456 18-74 (187)
251 PRK05809 3-hydroxybutyryl-CoA 54.3 32 0.0007 36.8 6.8 83 441-540 95-179 (260)
252 PLN02664 enoyl-CoA hydratase/d 54.2 48 0.001 35.9 8.2 84 441-541 109-194 (275)
253 COG0075 Serine-pyruvate aminot 54.1 87 0.0019 35.9 10.4 81 357-440 76-160 (383)
254 PRK04690 murD UDP-N-acetylmura 54.0 70 0.0015 37.4 10.0 88 74-178 331-418 (468)
255 PRK05869 enoyl-CoA hydratase; 53.6 29 0.00063 36.4 6.2 83 441-540 97-181 (222)
256 PLN02888 enoyl-CoA hydratase 53.3 37 0.00081 36.6 7.1 83 441-540 97-181 (265)
257 COG1171 IlvA Threonine dehydra 53.1 3.7E+02 0.0081 30.5 14.9 215 258-510 60-278 (347)
258 PLN02657 3,8-divinyl protochlo 53.0 3.1E+02 0.0067 31.2 14.9 24 200-223 58-85 (390)
259 TIGR00465 ilvC ketol-acid redu 52.6 27 0.00059 38.8 6.0 114 202-334 3-121 (314)
260 cd01391 Periplasmic_Binding_Pr 52.5 2.5E+02 0.0055 28.0 14.3 189 256-455 16-220 (269)
261 PRK07327 enoyl-CoA hydratase; 52.5 29 0.00063 37.4 6.1 83 441-540 104-188 (268)
262 PRK00094 gpsA NAD(P)H-dependen 52.4 32 0.0007 37.5 6.6 62 256-321 59-122 (325)
263 PRK08139 enoyl-CoA hydratase; 52.4 20 0.00042 38.7 4.8 83 441-540 102-185 (266)
264 TIGR00337 PyrG CTP synthase. C 52.4 2.5E+02 0.0055 33.6 14.1 88 78-174 119-222 (525)
265 PRK08463 acetyl-CoA carboxylas 52.3 26 0.00056 41.1 6.1 68 9-86 116-183 (478)
266 PLN02735 carbamoyl-phosphate s 52.3 21 0.00046 46.3 5.8 67 10-88 147-213 (1102)
267 PRK06190 enoyl-CoA hydratase; 52.1 31 0.00068 37.0 6.3 82 442-540 93-176 (258)
268 PRK09674 enoyl-CoA hydratase-i 51.9 37 0.00081 36.2 6.8 84 441-541 90-175 (255)
269 PRK07502 cyclohexadienyl dehyd 51.9 55 0.0012 35.8 8.3 112 203-330 7-124 (307)
270 PRK06495 enoyl-CoA hydratase; 51.6 44 0.00095 35.7 7.3 81 441-540 95-176 (257)
271 PF00070 Pyr_redox: Pyridine n 51.2 21 0.00047 30.7 4.0 55 93-160 1-58 (80)
272 PRK05980 enoyl-CoA hydratase; 51.2 32 0.0007 36.7 6.2 83 442-541 99-183 (260)
273 cd06342 PBP1_ABC_LIVBP_like Ty 51.1 3.4E+02 0.0074 29.1 14.6 149 288-447 58-220 (334)
274 TIGR02853 spore_dpaA dipicolin 51.1 98 0.0021 33.9 10.0 138 160-338 126-271 (287)
275 KOG0409|consensus 51.0 63 0.0014 35.8 8.2 111 201-327 34-152 (327)
276 cd06268 PBP1_ABC_transporter_L 50.9 1.7E+02 0.0038 30.1 11.6 153 284-448 54-221 (298)
277 PRK09076 enoyl-CoA hydratase; 50.6 39 0.00084 36.2 6.7 81 441-540 93-177 (258)
278 PRK08252 enoyl-CoA hydratase; 50.6 29 0.00064 37.0 5.8 83 441-540 89-173 (254)
279 TIGR00640 acid_CoA_mut_C methy 50.2 95 0.0021 30.0 8.6 86 74-177 39-125 (132)
280 PRK05294 carB carbamoyl phosph 50.1 35 0.00077 44.2 7.3 65 12-89 133-197 (1066)
281 PRK07680 late competence prote 49.9 39 0.00085 36.3 6.6 94 204-309 2-101 (273)
282 PRK06210 enoyl-CoA hydratase; 49.3 56 0.0012 35.2 7.7 82 441-541 106-191 (272)
283 cd06374 PBP1_mGluR_groupI Liga 49.1 2.9E+02 0.0063 32.1 14.2 85 358-446 184-274 (472)
284 COG1748 LYS9 Saccharopine dehy 48.9 78 0.0017 36.4 9.0 108 203-327 2-120 (389)
285 COG2185 Sbm Methylmalonyl-CoA 48.8 1.2E+02 0.0025 30.1 8.9 89 73-178 48-136 (143)
286 cd07021 Clp_protease_NfeD_like 48.4 45 0.00098 33.9 6.4 49 405-456 20-71 (178)
287 PRK12815 carB carbamoyl phosph 48.3 26 0.00057 45.3 5.8 63 12-87 675-737 (1068)
288 cd07013 S14_ClpP Caseinolytic 48.3 35 0.00077 34.0 5.5 53 402-456 16-71 (162)
289 PRK08260 enoyl-CoA hydratase; 48.3 39 0.00085 37.0 6.4 80 442-540 112-195 (296)
290 PRK06494 enoyl-CoA hydratase; 48.2 37 0.0008 36.4 6.0 84 441-541 92-177 (259)
291 cd00419 Ferrochelatase_C Ferro 48.1 40 0.00087 32.7 5.7 49 284-332 78-134 (135)
292 PLN02600 enoyl-CoA hydratase 48.0 49 0.0011 35.2 7.0 83 441-540 86-170 (251)
293 PRK14572 D-alanyl-alanine synt 47.8 41 0.00089 37.7 6.6 74 7-88 130-204 (347)
294 PRK06127 enoyl-CoA hydratase; 47.4 50 0.0011 35.6 6.9 83 441-540 104-188 (269)
295 PRK07509 enoyl-CoA hydratase; 47.3 59 0.0013 34.8 7.4 84 441-541 100-185 (262)
296 PRK05870 enoyl-CoA hydratase; 47.0 35 0.00076 36.3 5.6 81 441-540 93-177 (249)
297 PF10727 Rossmann-like: Rossma 47.0 48 0.001 32.0 6.0 108 201-326 9-122 (127)
298 TIGR02326 transamin_PhnW 2-ami 46.7 1.5E+02 0.0032 32.9 10.8 86 358-448 75-164 (363)
299 cd07015 Clp_protease_NfeD Nodu 46.4 51 0.0011 33.5 6.4 37 413-451 27-66 (172)
300 PRK14852 hypothetical protein; 45.9 70 0.0015 40.9 8.6 120 201-334 331-460 (989)
301 cd07034 TPP_PYR_PFOR_IOR-alpha 45.9 1.7E+02 0.0037 28.5 9.9 147 286-450 3-158 (160)
302 PRK07260 enoyl-CoA hydratase; 45.9 58 0.0013 34.7 7.1 83 441-540 96-180 (255)
303 PRK09245 enoyl-CoA hydratase; 45.8 53 0.0011 35.2 6.8 83 441-540 101-185 (266)
304 PF10087 DUF2325: Uncharacteri 45.5 74 0.0016 28.8 6.7 46 269-315 48-93 (97)
305 PRK05995 enoyl-CoA hydratase; 45.5 46 0.00099 35.6 6.3 33 441-474 97-129 (262)
306 PF05368 NmrA: NmrA-like famil 45.5 80 0.0017 32.6 8.0 51 284-336 54-107 (233)
307 PRK08762 molybdopterin biosynt 45.3 67 0.0014 36.5 7.9 118 201-334 134-261 (376)
308 cd06267 PBP1_LacI_sugar_bindin 45.1 2.2E+02 0.0048 28.9 11.2 145 286-443 45-202 (264)
309 KOG1680|consensus 45.0 32 0.0007 37.4 4.9 126 401-541 67-210 (290)
310 PRK06144 enoyl-CoA hydratase; 45.0 64 0.0014 34.6 7.3 83 441-540 100-185 (262)
311 PRK08140 enoyl-CoA hydratase; 45.0 45 0.00097 35.7 6.1 83 441-540 97-181 (262)
312 PRK05674 gamma-carboxygeranoyl 44.9 37 0.00079 36.6 5.4 33 441-474 99-131 (265)
313 PRK08138 enoyl-CoA hydratase; 44.7 53 0.0012 35.2 6.6 83 441-540 96-180 (261)
314 PRK08040 putative semialdehyde 44.4 65 0.0014 36.2 7.4 91 201-307 3-100 (336)
315 cd04509 PBP1_ABC_transporter_G 44.3 3.8E+02 0.0081 27.6 17.1 48 113-160 22-71 (299)
316 PRK08507 prephenate dehydrogen 44.2 1.2E+02 0.0026 32.6 9.4 75 204-294 2-80 (275)
317 cd06332 PBP1_aromatic_compound 44.2 2.7E+02 0.0059 29.8 12.2 150 285-447 53-218 (333)
318 PRK08223 hypothetical protein; 43.9 84 0.0018 34.6 8.0 119 201-334 26-155 (287)
319 PRK07658 enoyl-CoA hydratase; 43.7 46 0.001 35.5 5.9 83 441-540 92-176 (257)
320 cd02071 MM_CoA_mut_B12_BD meth 43.6 78 0.0017 29.8 6.9 84 218-331 23-111 (122)
321 PRK07799 enoyl-CoA hydratase; 43.5 66 0.0014 34.5 7.1 83 441-540 98-182 (263)
322 cd01493 APPBP1_RUB Ubiquitin a 43.5 1.1E+02 0.0024 35.6 9.3 119 201-336 19-150 (425)
323 PRK07659 enoyl-CoA hydratase; 43.4 57 0.0012 34.9 6.6 81 441-540 96-180 (260)
324 PRK05981 enoyl-CoA hydratase; 43.4 58 0.0013 34.9 6.7 83 441-540 101-185 (266)
325 PRK07110 polyketide biosynthes 43.4 64 0.0014 34.4 6.9 83 441-540 92-176 (249)
326 TIGR03301 PhnW-AepZ 2-aminoeth 43.2 1.8E+02 0.0039 31.7 10.7 86 358-448 71-160 (355)
327 TIGR03210 badI 2-ketocyclohexa 43.2 35 0.00075 36.5 4.9 82 442-540 93-176 (256)
328 TIGR01929 menB naphthoate synt 43.1 50 0.0011 35.4 6.1 83 441-540 95-179 (259)
329 PRK07938 enoyl-CoA hydratase; 43.1 43 0.00094 35.7 5.6 81 441-540 92-173 (249)
330 PLN02460 indole-3-glycerol-pho 42.8 28 0.0006 39.1 4.1 118 258-384 168-310 (338)
331 TIGR02356 adenyl_thiF thiazole 42.5 1E+02 0.0023 31.7 8.2 119 201-335 20-148 (202)
332 PRK07657 enoyl-CoA hydratase; 42.5 81 0.0018 33.7 7.6 83 441-540 95-179 (260)
333 PRK11423 methylmalonyl-CoA dec 42.5 70 0.0015 34.3 7.1 83 441-540 94-178 (261)
334 PRK05198 2-dehydro-3-deoxyphos 42.3 2.9E+02 0.0062 30.2 11.4 26 136-161 61-86 (264)
335 cd06349 PBP1_ABC_ligand_bindin 42.2 4.8E+02 0.01 28.3 14.7 197 234-447 3-220 (340)
336 PTZ00314 inosine-5'-monophosph 42.0 3.7E+02 0.008 31.9 13.5 105 207-338 235-357 (495)
337 PRK08258 enoyl-CoA hydratase; 41.8 54 0.0012 35.5 6.2 83 441-540 111-196 (277)
338 PLN02695 GDP-D-mannose-3',5'-e 41.8 5.2E+02 0.011 29.0 14.3 21 286-306 118-138 (370)
339 PRK01966 ddl D-alanyl-alanine 41.7 48 0.001 36.9 5.9 73 6-88 122-195 (333)
340 PF01210 NAD_Gly3P_dh_N: NAD-d 41.6 1.1E+02 0.0023 30.2 7.7 48 256-307 57-106 (157)
341 COG0240 GpsA Glycerol-3-phosph 40.9 1.2E+02 0.0026 34.0 8.7 61 256-321 59-122 (329)
342 PF01094 ANF_receptor: Recepto 40.7 3.5E+02 0.0076 28.9 12.4 160 281-452 36-215 (348)
343 PF00158 Sigma54_activat: Sigm 40.4 63 0.0014 32.4 6.0 109 405-520 13-126 (168)
344 PRK13403 ketol-acid reductoiso 40.2 1E+02 0.0022 34.6 8.0 89 201-308 15-109 (335)
345 PLN02591 tryptophan synthase 40.2 3.1E+02 0.0068 29.5 11.5 68 257-327 65-135 (250)
346 PRK07854 enoyl-CoA hydratase; 39.9 92 0.002 33.0 7.5 85 441-542 84-170 (243)
347 cd06343 PBP1_ABC_ligand_bindin 39.6 5.5E+02 0.012 28.2 15.2 135 305-448 80-230 (362)
348 PLN03214 probable enoyl-CoA hy 39.5 88 0.0019 34.0 7.4 83 441-540 105-190 (278)
349 cd06379 PBP1_iGluR_NMDA_NR1 N- 39.4 5.3E+02 0.011 28.7 13.9 81 358-445 152-241 (377)
350 cd06330 PBP1_Arsenic_SBP_like 39.3 3.7E+02 0.0081 29.2 12.5 200 234-448 3-228 (346)
351 PRK07396 dihydroxynaphthoic ac 39.1 65 0.0014 34.8 6.3 83 441-540 105-189 (273)
352 COG2129 Predicted phosphoester 39.0 92 0.002 33.1 7.0 70 76-152 15-87 (226)
353 PRK07679 pyrroline-5-carboxyla 38.6 1.5E+02 0.0033 31.9 9.1 100 203-314 4-109 (279)
354 PRK05617 3-hydroxyisobutyryl-C 38.6 36 0.00079 38.2 4.3 33 441-474 98-130 (342)
355 TIGR03200 dearomat_oah 6-oxocy 38.5 71 0.0015 36.3 6.5 17 525-541 191-207 (360)
356 TIGR01921 DAP-DH diaminopimela 38.5 1.3E+02 0.0028 33.8 8.5 72 259-338 51-124 (324)
357 cd06356 PBP1_Amide_Urea_BP_lik 38.5 5.2E+02 0.011 28.2 13.4 150 287-448 57-219 (334)
358 PRK11880 pyrroline-5-carboxyla 37.9 61 0.0013 34.5 5.8 96 203-311 3-101 (267)
359 PRK02261 methylaspartate mutas 37.8 1.8E+02 0.0038 28.3 8.4 74 256-331 41-121 (137)
360 COG1646 Predicted phosphate-bi 37.7 3.1E+02 0.0066 29.5 10.5 148 283-440 28-188 (240)
361 PRK06728 aspartate-semialdehyd 36.9 1.6E+02 0.0035 33.3 9.1 114 201-333 4-134 (347)
362 PRK14874 aspartate-semialdehyd 36.8 1.7E+02 0.0036 32.8 9.2 81 203-297 2-88 (334)
363 PRK00436 argC N-acetyl-gamma-g 36.5 92 0.002 35.0 7.1 48 258-309 57-104 (343)
364 cd01971 Nitrogenase_VnfN_like 36.3 5E+02 0.011 30.0 13.3 152 282-449 71-237 (427)
365 PRK13957 indole-3-glycerol-pho 36.1 68 0.0015 34.5 5.7 100 287-396 116-232 (247)
366 PRK14806 bifunctional cyclohex 36.1 1.3E+02 0.0029 37.1 9.1 110 203-327 4-119 (735)
367 PRK08272 enoyl-CoA hydratase; 36.0 90 0.002 34.3 6.9 16 441-456 125-140 (302)
368 TIGR02280 PaaB1 phenylacetate 36.0 71 0.0015 34.1 5.9 83 441-540 91-175 (256)
369 PRK01018 50S ribosomal protein 36.0 84 0.0018 28.9 5.6 41 285-326 21-61 (99)
370 COG4693 PchG Oxidoreductase (N 35.9 61 0.0013 35.5 5.1 70 254-327 49-120 (361)
371 PF03709 OKR_DC_1_N: Orn/Lys/A 35.7 95 0.0021 29.1 6.0 71 370-451 3-75 (115)
372 PRK07468 enoyl-CoA hydratase; 35.6 68 0.0015 34.4 5.7 83 441-540 98-181 (262)
373 PRK05862 enoyl-CoA hydratase; 35.6 48 0.001 35.4 4.5 32 441-473 92-123 (257)
374 PRK06395 phosphoribosylamine-- 35.5 1.5E+02 0.0033 34.4 8.9 46 284-332 53-98 (435)
375 CHL00194 ycf39 Ycf39; Provisio 35.3 2.5E+02 0.0055 30.5 10.3 88 204-305 2-110 (317)
376 PRK14851 hypothetical protein; 35.1 1.3E+02 0.0029 37.1 8.6 119 201-333 42-170 (679)
377 PRK12435 ferrochelatase; Provi 34.9 65 0.0014 35.8 5.5 49 284-332 233-289 (311)
378 PLN02858 fructose-bisphosphate 34.8 1.1E+02 0.0024 40.9 8.4 112 201-328 323-443 (1378)
379 cd01483 E1_enzyme_family Super 34.7 2.3E+02 0.0051 27.0 8.8 115 204-334 1-125 (143)
380 PLN02921 naphthoate synthase 34.7 76 0.0016 35.5 6.0 32 442-474 160-191 (327)
381 PF13407 Peripla_BP_4: Peripla 34.4 1.1E+02 0.0024 31.6 7.0 45 285-331 44-88 (257)
382 PRK06524 biotin carboxylase-li 34.3 74 0.0016 37.6 6.0 72 7-89 142-215 (493)
383 cd00755 YgdL_like Family of ac 34.2 1.7E+02 0.0036 31.2 8.2 157 201-393 10-181 (231)
384 PRK14620 NAD(P)H-dependent gly 34.1 1.8E+02 0.0038 32.1 8.9 51 256-309 58-111 (326)
385 PRK08290 enoyl-CoA hydratase; 34.1 75 0.0016 34.7 5.8 80 441-540 116-198 (288)
386 PRK12999 pyruvate carboxylase; 34.0 64 0.0014 42.2 6.0 67 9-86 121-187 (1146)
387 COG0269 SgbH 3-hexulose-6-phos 34.0 54 0.0012 34.6 4.3 68 46-118 123-212 (217)
388 cd06300 PBP1_ABC_sugar_binding 33.8 3.6E+02 0.0078 28.0 10.8 45 285-331 49-93 (272)
389 PRK06349 homoserine dehydrogen 33.8 73 0.0016 36.9 5.9 80 256-337 58-137 (426)
390 PRK14619 NAD(P)H-dependent gly 33.7 1.5E+02 0.0033 32.5 8.1 78 202-309 4-87 (308)
391 COG0059 IlvC Ketol-acid reduct 33.7 55 0.0012 36.3 4.5 91 201-309 17-113 (338)
392 PRK13601 putative L7Ae-like ri 33.3 99 0.0021 27.6 5.3 45 285-330 13-57 (82)
393 PF01118 Semialdhyde_dh: Semia 33.3 1.4E+02 0.0031 27.8 6.9 36 268-307 65-100 (121)
394 PRK06563 enoyl-CoA hydratase; 33.3 1.5E+02 0.0032 31.6 7.8 83 441-540 90-174 (255)
395 cd06333 PBP1_ABC-type_HAAT_lik 33.1 6.1E+02 0.013 27.1 12.7 81 362-448 135-219 (312)
396 PF03807 F420_oxidored: NADP o 33.0 64 0.0014 28.5 4.2 75 204-292 1-81 (96)
397 PF03435 Saccharop_dh: Sacchar 32.8 1.1E+02 0.0024 34.5 7.1 65 256-327 55-119 (386)
398 PRK03369 murD UDP-N-acetylmura 32.4 1.8E+02 0.0039 34.2 9.0 88 73-179 335-451 (488)
399 PRK13602 putative ribosomal pr 32.0 1.2E+02 0.0026 26.9 5.7 42 285-327 16-57 (82)
400 PRK07877 hypothetical protein; 31.9 3.7E+02 0.0081 33.5 11.7 176 129-327 11-225 (722)
401 PRK09120 p-hydroxycinnamoyl Co 31.8 80 0.0017 34.2 5.5 46 442-492 103-148 (275)
402 PF01113 DapB_N: Dihydrodipico 31.8 1.7E+02 0.0037 27.6 7.1 87 362-455 2-103 (124)
403 cd01967 Nitrogenase_MoFe_alpha 31.7 5.2E+02 0.011 29.4 12.4 148 281-448 71-236 (406)
404 cd07016 S14_ClpP_1 Caseinolyti 30.9 1.2E+02 0.0026 29.8 6.2 49 403-456 20-71 (160)
405 cd06344 PBP1_ABC_ligand_bindin 30.7 5.5E+02 0.012 27.8 12.0 170 269-448 39-222 (332)
406 PRK08655 prephenate dehydrogen 30.6 1.3E+02 0.0029 34.9 7.4 107 204-329 2-115 (437)
407 KOG3505|consensus 30.5 56 0.0012 26.6 2.9 43 375-424 9-51 (55)
408 cd06336 PBP1_ABC_ligand_bindin 30.5 5.8E+02 0.013 27.9 12.2 171 269-449 44-226 (347)
409 PF14871 GHL6: Hypothetical gl 30.4 84 0.0018 30.5 4.8 48 286-333 3-67 (132)
410 cd04509 PBP1_ABC_transporter_G 30.3 6.1E+02 0.013 26.0 13.8 153 285-449 55-225 (299)
411 COG0436 Aspartate/tyrosine/aro 30.1 1.5E+02 0.0032 34.0 7.5 75 256-331 120-204 (393)
412 cd06332 PBP1_aromatic_compound 30.0 7.1E+02 0.015 26.6 16.3 50 112-161 21-70 (333)
413 PRK08462 biotin carboxylase; V 30.0 2.4E+02 0.0052 32.6 9.4 48 285-335 65-113 (445)
414 cd06339 PBP1_YraM_LppC_lipopro 29.9 3.4E+02 0.0074 29.8 10.2 161 234-412 3-177 (336)
415 cd06362 PBP1_mGluR Ligand bind 29.8 5.8E+02 0.013 29.2 12.5 82 358-443 170-256 (452)
416 PRK09275 aspartate aminotransf 29.8 5.5E+02 0.012 30.8 12.4 170 141-333 92-286 (527)
417 PTZ00106 60S ribosomal protein 29.7 1.1E+02 0.0023 28.8 5.2 42 285-327 30-71 (108)
418 cd07362 HPCD_like Class III ex 29.5 6.3E+02 0.014 27.4 11.9 135 369-509 91-230 (272)
419 PF10100 DUF2338: Uncharacteri 29.1 1.2E+02 0.0026 35.0 6.3 52 256-311 71-125 (429)
420 PRK10820 DNA-binding transcrip 29.1 1.3E+02 0.0028 35.8 7.1 126 383-518 199-329 (520)
421 TIGR01235 pyruv_carbox pyruvat 29.1 85 0.0019 41.0 5.9 68 9-87 117-184 (1143)
422 PRK13535 erythrose 4-phosphate 29.0 1.5E+02 0.0032 33.5 7.0 51 250-305 70-123 (336)
423 PRK12491 pyrroline-5-carboxyla 29.0 1.5E+02 0.0031 32.2 6.9 100 203-314 3-107 (272)
424 COG0541 Ffh Signal recognition 28.8 2.2E+02 0.0047 33.3 8.4 130 168-320 52-209 (451)
425 PF00289 CPSase_L_chain: Carba 28.7 74 0.0016 29.8 4.0 46 283-331 61-107 (110)
426 PRK09461 ansA cytoplasmic aspa 28.5 2.1E+02 0.0045 32.2 8.2 74 404-497 223-301 (335)
427 cd06359 PBP1_Nba_like Type I p 28.5 7.8E+02 0.017 26.6 12.8 77 360-442 134-211 (333)
428 cd06375 PBP1_mGluR_groupII Lig 28.5 2.3E+02 0.0049 33.0 8.9 84 360-447 174-262 (458)
429 cd06270 PBP1_GalS_like Ligand 28.5 5.8E+02 0.013 26.3 11.3 158 282-449 41-212 (268)
430 cd06340 PBP1_ABC_ligand_bindin 28.3 7.5E+02 0.016 27.0 12.7 136 305-447 76-229 (347)
431 PRK06928 pyrroline-5-carboxyla 28.1 1.6E+02 0.0035 31.8 7.1 99 204-314 3-108 (277)
432 PRK12478 enoyl-CoA hydratase; 28.0 1.1E+02 0.0024 33.7 5.8 16 441-456 110-125 (298)
433 KOG2799|consensus 28.0 48 0.001 37.4 2.9 95 359-455 285-384 (434)
434 PRK11382 frlB fructoselysine-6 28.0 3E+02 0.0065 30.7 9.4 107 282-409 29-139 (340)
435 COG0287 TyrA Prephenate dehydr 27.8 2.4E+02 0.0052 30.9 8.3 111 202-328 3-120 (279)
436 COG2984 ABC-type uncharacteriz 27.7 9.1E+02 0.02 27.1 13.8 155 129-327 32-192 (322)
437 cd06360 PBP1_alkylbenzenes_lik 27.7 7.8E+02 0.017 26.4 15.5 52 112-164 21-72 (336)
438 TIGR01850 argC N-acetyl-gamma- 27.6 1.8E+02 0.0038 32.8 7.5 44 261-309 61-104 (346)
439 cd06352 PBP1_NPR_GC_like Ligan 27.5 6.4E+02 0.014 27.9 12.0 171 269-449 41-226 (389)
440 COG0151 PurD Phosphoribosylami 27.3 1.6E+02 0.0036 34.0 7.1 44 283-330 50-94 (428)
441 TIGR01768 GGGP-family geranylg 27.2 3.3E+02 0.0071 28.9 8.9 153 285-448 16-184 (223)
442 cd07371 2A5CPDO_AB The alpha a 27.2 5.5E+02 0.012 27.8 10.9 130 369-507 86-222 (268)
443 cd07110 ALDH_F10_BADH Arabidop 27.2 7.6E+02 0.016 28.6 12.9 130 359-510 146-290 (456)
444 PRK08321 naphthoate synthase; 27.1 76 0.0017 34.9 4.4 31 441-472 133-163 (302)
445 TIGR01408 Ube1 ubiquitin-activ 26.7 1.6E+02 0.0035 38.1 7.6 113 201-336 23-150 (1008)
446 PRK05690 molybdopterin biosynt 26.7 2.5E+02 0.0055 29.9 8.2 114 201-333 31-157 (245)
447 COG2313 IndA Uncharacterized e 26.6 8.6E+02 0.019 26.5 12.4 158 289-457 17-195 (310)
448 PRK12483 threonine dehydratase 26.6 5.8E+02 0.013 30.6 11.8 194 279-509 91-287 (521)
449 PF13407 Peripla_BP_4: Peripla 26.4 5.4E+02 0.012 26.4 10.5 90 80-177 111-202 (257)
450 PRK07475 hypothetical protein; 26.3 3.3E+02 0.0073 29.0 9.0 136 283-448 65-224 (245)
451 PRK03580 carnitinyl-CoA dehydr 25.9 1.1E+02 0.0024 32.8 5.3 83 441-540 92-176 (261)
452 PRK05583 ribosomal protein L7A 25.8 1.6E+02 0.0035 27.4 5.6 44 285-329 22-65 (104)
453 TIGR03570 NeuD_NnaD sugar O-ac 25.8 2.5E+02 0.0054 27.8 7.6 84 204-304 1-91 (201)
454 COG0157 NadC Nicotinate-nucleo 25.8 4.3E+02 0.0094 29.0 9.6 153 111-327 106-259 (280)
455 PRK13252 betaine aldehyde dehy 25.6 8.2E+02 0.018 28.7 12.9 129 359-510 168-311 (488)
456 PRK06476 pyrroline-5-carboxyla 25.5 2.4E+02 0.0053 29.9 7.8 99 204-315 2-104 (258)
457 PRK08788 enoyl-CoA hydratase; 25.4 2.1E+02 0.0046 31.3 7.4 83 441-540 119-203 (287)
458 PF01972 SDH_sah: Serine dehyd 25.3 7.3E+02 0.016 27.4 11.1 90 403-495 77-180 (285)
459 PF06230 DUF1009: Protein of u 25.3 69 0.0015 33.8 3.4 62 255-328 153-214 (214)
460 COG1023 Gnd Predicted 6-phosph 25.3 2E+02 0.0043 31.2 6.7 113 205-335 3-124 (300)
461 PTZ00345 glycerol-3-phosphate 25.2 4.2E+02 0.0092 30.2 10.0 50 256-309 81-134 (365)
462 PRK08259 enoyl-CoA hydratase; 25.1 1.5E+02 0.0033 31.6 6.1 46 441-491 91-136 (254)
463 PRK14568 vanB D-alanine--D-lac 24.9 1.1E+02 0.0023 34.2 5.2 64 9-87 134-197 (343)
464 TIGR03376 glycerol3P_DH glycer 24.6 3.3E+02 0.0071 30.7 8.9 50 256-310 70-122 (342)
465 PRK13802 bifunctional indole-3 24.6 1.1E+02 0.0024 37.8 5.5 91 288-384 126-233 (695)
466 KOG2733|consensus 24.5 1E+02 0.0022 35.0 4.7 65 260-329 75-143 (423)
467 PRK02228 V-type ATP synthase s 24.4 5E+02 0.011 23.8 8.6 77 204-305 2-79 (100)
468 COG1064 AdhP Zn-dependent alco 24.4 6E+02 0.013 28.8 10.7 83 198-296 163-253 (339)
469 cd06359 PBP1_Nba_like Type I p 24.2 9.3E+02 0.02 26.0 15.5 50 112-161 21-70 (333)
470 TIGR00877 purD phosphoribosyla 24.2 2.2E+02 0.0048 32.5 7.7 46 283-331 51-96 (423)
471 cd06268 PBP1_ABC_transporter_L 24.2 7.8E+02 0.017 25.2 16.7 50 112-162 21-72 (298)
472 KOG2774|consensus 24.0 6.6E+02 0.014 27.2 10.2 191 199-424 41-257 (366)
473 PRK08328 hypothetical protein; 23.9 3.9E+02 0.0084 28.2 8.9 116 201-335 26-155 (231)
474 cd01828 sialate_O-acetylestera 23.9 2.6E+02 0.0056 27.1 7.1 68 58-135 20-93 (169)
475 PF03447 NAD_binding_3: Homose 23.8 67 0.0015 29.7 2.8 69 256-327 45-115 (117)
476 PRK13479 2-aminoethylphosphona 23.7 5.8E+02 0.013 28.1 10.7 86 358-448 77-166 (368)
477 PF00899 ThiF: ThiF family; I 23.6 2.9E+02 0.0064 26.1 7.3 116 201-333 1-127 (135)
478 cd00757 ThiF_MoeB_HesA_family 23.6 3E+02 0.0064 28.9 7.9 117 201-333 20-146 (228)
479 cd06327 PBP1_SBP_like_1 Peripl 23.4 9.6E+02 0.021 25.9 13.4 69 113-182 23-92 (334)
480 cd06335 PBP1_ABC_ligand_bindin 23.4 9.9E+02 0.021 26.1 17.2 72 112-184 21-95 (347)
481 PF08659 KR: KR domain; Inter 23.4 5.6E+02 0.012 25.5 9.6 87 363-455 3-93 (181)
482 TIGR03025 EPS_sugtrans exopoly 23.3 2E+02 0.0044 33.2 7.2 64 437-510 297-360 (445)
483 PRK06683 hypothetical protein; 23.3 2.1E+02 0.0045 25.4 5.6 42 285-327 16-57 (82)
484 TIGR01804 BADH glycine betaine 23.2 6.5E+02 0.014 29.3 11.4 116 373-510 176-303 (467)
485 PRK15116 sulfur acceptor prote 23.2 7E+02 0.015 27.2 10.7 62 262-325 114-192 (268)
486 PRK06186 hypothetical protein; 23.1 1.2E+02 0.0025 32.4 4.6 72 256-335 14-93 (229)
487 cd06348 PBP1_ABC_ligand_bindin 23.0 9.8E+02 0.021 25.9 13.2 187 112-325 21-218 (344)
488 COG0565 LasT rRNA methylase [T 23.0 3E+02 0.0065 29.7 7.6 56 202-267 4-71 (242)
489 PLN02409 serine--glyoxylate am 23.0 5.1E+02 0.011 29.4 10.3 77 357-436 80-162 (401)
490 PRK00087 4-hydroxy-3-methylbut 22.9 1.5E+03 0.032 27.9 16.9 218 255-510 53-300 (647)
491 COG3268 Uncharacterized conser 22.9 1.2E+02 0.0025 34.3 4.7 66 266-335 68-135 (382)
492 COG0028 IlvB Thiamine pyrophos 22.9 1.4E+03 0.03 27.6 20.6 142 361-509 374-520 (550)
493 PRK07417 arogenate dehydrogena 22.8 2.1E+02 0.0046 30.8 6.8 94 204-314 2-100 (279)
494 KOG2012|consensus 22.8 1.4E+02 0.0029 37.5 5.5 144 201-369 36-192 (1013)
495 cd07017 S14_ClpP_2 Caseinolyti 22.7 1.9E+02 0.0041 29.0 6.0 63 390-456 11-80 (171)
496 PF07085 DRTGG: DRTGG domain; 22.7 1.5E+02 0.0034 26.9 4.9 44 281-328 47-90 (105)
497 PRK05920 aromatic acid decarbo 22.7 3.7E+02 0.0081 28.1 8.2 44 292-337 126-170 (204)
498 COG1024 CaiD Enoyl-CoA hydrata 22.7 1.6E+02 0.0034 31.4 5.7 16 441-456 96-111 (257)
499 PRK05562 precorrin-2 dehydroge 22.6 6E+02 0.013 27.0 9.8 89 200-327 23-114 (223)
500 cd01966 Nitrogenase_NifN_1 Nit 22.6 6.8E+02 0.015 28.9 11.2 155 278-449 63-252 (417)
No 1
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.2e-144 Score=1241.53 Aligned_cols=602 Identities=53% Similarity=0.928 Sum_probs=576.6
Q ss_pred CCCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 198 GGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.|+++|+.+|||++.+++|.|+||+|+|+|++|||.+.||| ..+|+||||||.+++++|+|.|++||+.+++++++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~~~vi 84 (608)
T PLN02522 6 LFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINP-GSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTADVFIN 84 (608)
T ss_pred eecCCceeEEEcCcHHHHHhhhccceeccCCCCeeEEEEcC-CCCcceeEecCCEeeCccccchHHHHHHhCCCCcEEEE
Confidence 38899999999999999999999999999999999999999 55899999999999999999999999999989999999
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCC
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKL 357 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~ 357 (806)
|+||+++.++++|+|.++|||.+||||+||+|.++++|+++|+++|+||+||||+|++||+++++|++.+...+..+...
T Consensus 85 fvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~~~~~~ 164 (608)
T PLN02522 85 FASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKL 164 (608)
T ss_pred eCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccCcccccccccccccccCcCC
Confidence 99999999999999998999999999999999999999999999999999999999999998899876654333444345
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
++||+||+|||||+|++++++++.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+|||+..+++|++++
T Consensus 165 ~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~ 244 (608)
T PLN02522 165 YRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL 244 (608)
T ss_pred CCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHH
Confidence 78999999999999999999999999999999999999977789999999999999999999999999888889999999
Q ss_pred HhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccc
Q psy16953 438 KDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIV 517 (806)
Q Consensus 438 r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~ 517 (806)
++++++||||+||+|||++++++++++|||||++|++..|+++|+++|||+|+++++|++||++.++.++++|+.+|+|+
T Consensus 245 ~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~~~~~ 324 (608)
T PLN02522 245 KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKII 324 (608)
T ss_pred HHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhCCcee
Confidence 99889999999999999965578999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccchHHhhcccccccccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHH
Q psy16953 518 PQPELPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLE 597 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~r~~~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~ 597 (806)
|.+|+|||..||||+||+|+|++||+++|+|+|||.+++++.||||||+|++++++||+++|++||+|++|+++++++||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~~~ld 404 (608)
T PLN02522 325 PVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIE 404 (608)
T ss_pred ecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhcccccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCccc
Q psy16953 598 MSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIM 677 (806)
Q Consensus 598 ~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~alG~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ip 677 (806)
++||++||||+|+||+|++|+++||++|+|+|++|||+++||+||||++.|++||+++.+++.+++++|++++++|++||
T Consensus 405 ~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~~~Ip 484 (608)
T PLN02522 405 MCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVP 484 (608)
T ss_pred HHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCCCccc
Confidence 99999999999999978999999999999999999999999999999999999999998666689999999999999999
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhh
Q psy16953 678 GIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEY 757 (806)
Q Consensus 678 GfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~ 757 (806)
|||||+|+.+++|||+++|++++++++..++++++++++|+++.+++++|+||||||+|+++++||+|+++||++|+.||
T Consensus 485 GFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e~~~~ 564 (608)
T PLN02522 485 GIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEI 564 (608)
T ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCcccccccc
Confidence 99999997778899999999999999889999999999999877767899999999999999999999999999999999
Q ss_pred hhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceec
Q psy16953 758 VEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYV 800 (806)
Q Consensus 758 i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~ 800 (806)
|.+++++++|++||++||+||++||+++++++||++|++|+|+
T Consensus 565 ~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~ 607 (608)
T PLN02522 565 VEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYT 607 (608)
T ss_pred ccccccceEEEeehHHHHHHHHHHHHHhhCCcccCchhhcccc
Confidence 9999999999999999999999999999999999999999996
No 2
>KOG1254|consensus
Probab=100.00 E-value=5.5e-103 Score=846.23 Aligned_cols=595 Identities=67% Similarity=1.039 Sum_probs=584.0
Q ss_pred CCCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 198 GGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.|+.+||.+|||++.|++| +|.|+.|+|.+.+| +...+.|++|||.++|.+|+|+++.+++-+||+.++.++
T Consensus 5 lfe~dtKAi~~~~q~ravq-------lckr~~psVaa~~~-~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~ 76 (600)
T KOG1254|consen 5 LFEYDTKAIVWGMQQRAVQ-------LCKRHFPSVAAIIY-FTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPW 76 (600)
T ss_pred hhhccchHhhhhhhhhhhh-------hhhccCccceeeec-ccccchhheecCCceEEeechhhHHHHHhcCcccceeec
Confidence 4889999999999999988 79999999999999 888889999999999999999999999999999999999
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCC
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKL 357 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~ 357 (806)
|++-+.++...++...+.+++.+.|+++|.+|++.++++..+++.+..++||-|.|++.|+|+++|||+|+.+++...+.
T Consensus 77 faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~kl 156 (600)
T KOG1254|consen 77 FASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNSKL 156 (600)
T ss_pred hhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
++||+|++||.||+|++++++...+...|....+.+|+++|++.++.|++-.+++||.+|.|++..|+|+..|.+|+++.
T Consensus 157 yR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~ 236 (600)
T KOG1254|consen 157 YRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLEAN 236 (600)
T ss_pred cCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccc
Q psy16953 438 KDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIV 517 (806)
Q Consensus 438 r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~ 517 (806)
++.+.+||+|+|++|+|+.+|..+.+++|+|+.+.....++++++++++.+|+.+++++++|....+..++.++..|.+.
T Consensus 237 k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvv 316 (600)
T KOG1254|consen 237 KEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVV 316 (600)
T ss_pred hcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccchHHhhcccccccccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHH
Q psy16953 518 PQPELPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLE 597 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~r~~~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~ 597 (806)
|.+|+|||..|||++||+|+|++|++.+++|+|++.+|.+++|+|.++...+.++++..+.+.++|++++.+++..++||
T Consensus 317 p~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie 396 (600)
T KOG1254|consen 317 PKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIE 396 (600)
T ss_pred CcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhcccccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCccc
Q psy16953 598 MSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIM 677 (806)
Q Consensus 598 ~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~alG~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ip 677 (806)
.|+++.+|||+.+|.++.+.+++++++|+++++++||++.|+++||+.+.+.+++.+.++++..+++++.++++.+.+||
T Consensus 397 ~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfggald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~ 476 (600)
T KOG1254|consen 397 ICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGGALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVY 476 (600)
T ss_pred HHhhccCCCCceeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcchhhHHHHhcChhhhccCchHHHhhhhhCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhh
Q psy16953 678 GIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEY 757 (806)
Q Consensus 678 GfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~ 757 (806)
|.|||+.+..|||-|+.+|+++++++|+..|++++|.++|+++++|++||.+|||+++|++|.||.+++|+||.||++||
T Consensus 477 Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~k~~nlilnvdg~i~~~fvd~l~~~g~ft~~e~~e~ 556 (600)
T KOG1254|consen 477 GIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTSKKPNLILNVDGAIAVLFVDLLRNSGMFTKEEADEY 556 (600)
T ss_pred CCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeeccCCCCEEEeccchhHHHHHHHHhccCCccHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceec
Q psy16953 758 VEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYV 800 (806)
Q Consensus 758 i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~ 800 (806)
|..+++++||+++|++|+|+|+++|++++|++|||+||||+|+
T Consensus 557 i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrhpwdd~~y~ 599 (600)
T KOG1254|consen 557 INIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRHPWDDISYV 599 (600)
T ss_pred eecccccceEEeeeecchhhhhccHhhhhCccccCCchhhhhc
Confidence 9999999999999999999999999999999999999999997
No 3
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=3.9e-61 Score=515.37 Aligned_cols=278 Identities=28% Similarity=0.390 Sum_probs=240.3
Q ss_pred CCCCceEEEEccCh----hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC--CC
Q psy16953 199 GQEQTKAIVWGMQT----RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN--KD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~----r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~--~D 271 (806)
++.+|+|+|||+++ +.++||+++|| . .+|||||+. |++++ |+|||+|++| +|+. ||
T Consensus 5 ~~~~~~~~v~~~~~~~g~~~l~~l~~~g~---------~-~v~pVnp~~------~~~~v~G~~~y~sv~d-lp~~~~~D 67 (291)
T PRK05678 5 INKDTKVIVQGITGKQGTFHTEQMLAYGT---------N-IVGGVTPGK------GGTTVLGLPVFNTVAE-AVEATGAN 67 (291)
T ss_pred ecCCCeEEEeCCCchHHHHHHHHHHHCCC---------C-EEEEECCCC------CCCeEeCeeccCCHHH-HhhccCCC
Confidence 78999999999965 46999999999 8 999999982 02455 7999999999 8997 99
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDN 351 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~ 351 (806)
++|| ++|+..+++++++|.++|||.+||+|+||+++++++|+++|+++|+|++||||+|++||. .+++.+
T Consensus 68 lAvi---~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~-------~~~~~~ 137 (291)
T PRK05678 68 ASVI---YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPG-------ECKIGI 137 (291)
T ss_pred EEEE---EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccc-------cceeee
Confidence 9999 779999999999999999999999999999888889999999999999999999999998 344445
Q ss_pred ccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 352 ILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 352 ~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
|.+ ..++||+||+|||||+++.++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+| ++++
T Consensus 138 ~~~-~~~~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE--~~~~~ 214 (291)
T PRK05678 138 MPG-HIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGE--IGGSA 214 (291)
T ss_pred cCC-CCCCCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe--cCCcH
Confidence 543 346799999999999999999999999999999999999995556999999999999999999999999 7776
Q ss_pred HH-HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHh
Q psy16953 431 YE-VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 431 ~~-f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~ 509 (806)
++ .++.+++ +++||||+||+|||++ .|++ +|||||++++...++.+|+++|||+|+++++|++||++.++.+++.
T Consensus 215 ~~~a~~~~~~-~~~KPVV~lk~Grs~~-~g~~--~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~ 290 (291)
T PRK05678 215 EEEAAEYIKA-NVTKPVVGYIAGVTAP-PGKR--MGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKG 290 (291)
T ss_pred HHHHHHHHHH-cCCCCEEEEEecCCCC-CCCc--ccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHcc
Confidence 44 2222322 2589999999999994 1443 5999999944444455599999999999999999999999999876
Q ss_pred h
Q psy16953 510 L 510 (806)
Q Consensus 510 L 510 (806)
|
T Consensus 291 ~ 291 (291)
T PRK05678 291 L 291 (291)
T ss_pred C
Confidence 4
No 4
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=1e-59 Score=503.33 Aligned_cols=269 Identities=29% Similarity=0.439 Sum_probs=237.0
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC--CC
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN--KD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~--~D 271 (806)
++.+|+|+|+|++++. +++|+.+|| . .+++|||+. |++++ |+|||+|++| +|+. ||
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~---------~-~v~~V~p~~------~~~~v~G~~~y~sv~d-lp~~~~~D 65 (286)
T TIGR01019 3 LDKDTKVIVQGITGSQGSFHTEQMLAYGT---------N-IVGGVTPGK------GGTTVLGLPVFDSVKE-AVEETGAN 65 (286)
T ss_pred ecCCCcEEEecCCcHHHHHHHHHHHhCCC---------C-EEEEECCCC------CcceecCeeccCCHHH-HhhccCCC
Confidence 6789999999999986 779999998 7 999999982 13566 6999999999 8997 89
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDN 351 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~ 351 (806)
++++ ++|+..+++++++|.++|||.+||+|+||+|.+|++|+++|+++|+||+||||+|++||. .+++.+
T Consensus 66 lavi---~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Giin~~-------~~~~~~ 135 (286)
T TIGR01019 66 ASVI---FVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGIITPG-------ECKIGI 135 (286)
T ss_pred EEEE---ecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceEEccc-------ccceee
Confidence 9999 778999999999999999999999999999999999999999999999999999999998 456666
Q ss_pred ccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 352 ILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 352 ~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
|.+ ..++||+||+|||||+++.++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+| ++++
T Consensus 136 ~~~-~~~~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE--~~~~~ 212 (286)
T TIGR01019 136 MPG-HIHKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGE--IGGSA 212 (286)
T ss_pred ccc-cCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe--cCCch
Confidence 654 346799999999999999999999999999999999999995556999999999999999999999999 7666
Q ss_pred HH-HHHHHHhcCCCCCEEEEEeCcCc-CcCcccccccccCCcC----CCCcccHHHHHHHHHHcCCcccCChhhHHHHHH
Q psy16953 431 YE-VCAALKDKRITKPLVAWCIGTCA-SMFTSEVQFGHAGSCA----NSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIG 504 (806)
Q Consensus 431 ~~-f~~a~r~~~~~KPVV~lk~Grs~-~~~g~~aa~sHtGala----g~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~ 504 (806)
++ .++.+++ .++||||++|+|||+ . |++ +|||||++ |++++ |+++|||+|+++++|++||++.++
T Consensus 213 ~~~~~~~~~~-~~~KPVV~lk~Grs~~~--g~~--~sHTGala~~~~g~~~~----~~aa~rqaGvi~v~~~~el~d~l~ 283 (286)
T TIGR01019 213 EEEAADFIKQ-NMSKPVVGFIAGATAPP--GKR--MGHAGAIISGGKGTAES----KIEALEAAGVTVVKSPSDIGELLA 283 (286)
T ss_pred HHHHHHHHHh-cCCCCEEEEEecCCCCc--ccc--ccchhhhhcCCCCCHHH----HHHHHHHCCCeEeCCHHHHHHHHH
Confidence 33 2222322 378999999999998 4 443 59999999 55555 999999999999999999999988
Q ss_pred HH
Q psy16953 505 SV 506 (806)
Q Consensus 505 al 506 (806)
++
T Consensus 284 ~~ 285 (286)
T TIGR01019 284 EI 285 (286)
T ss_pred Hh
Confidence 75
No 5
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=6.9e-59 Score=528.61 Aligned_cols=271 Identities=20% Similarity=0.321 Sum_probs=250.5
Q ss_pred CCCCCceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC
Q psy16953 198 GGQEQTKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN 269 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~ 269 (806)
.|+|+ +|+|+|++.+ .++||+++|| +|+||||||++ +++ |+|||+|++| +|+.
T Consensus 4 l~~p~-siavvGaS~~~~~~g~~~~~~l~~~gf---------~g~v~~Vnp~~--------~~i~G~~~~~sl~~-lp~~ 64 (447)
T TIGR02717 4 LFNPK-SVAVIGASRDPGKVGYAIMKNLIEGGY---------KGKIYPVNPKA--------GEILGVKAYPSVLE-IPDP 64 (447)
T ss_pred ccCCC-EEEEEccCCCCCchHHHHHHHHHhCCC---------CCcEEEECCCC--------CccCCccccCCHHH-CCCC
Confidence 36666 5889999744 4899999999 99999999995 556 6999999999 8999
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH------HHHHHHHHHHHHcCCeEEccCccccccCCccccc
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE------NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIG 343 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E------~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig 343 (806)
||+++| ++|+..+++++++|.++|+|.++|+|+||+| ++|++|+++|+++|+|++||||+|++||.
T Consensus 65 ~Dlavi---~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~----- 136 (447)
T TIGR02717 65 VDLAVI---VVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTH----- 136 (447)
T ss_pred CCEEEE---ecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCC-----
Confidence 999998 6788999999999999999999999999998 46899999999999999999999999998
Q ss_pred cCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEE
Q psy16953 344 NTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLG 423 (806)
Q Consensus 344 ~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~ 423 (806)
.+++.+|.+. .++||+||+|||||+++.++++|+.++|+|||++||+||+ +|+++.|+|+||.+||+||+|++|+
T Consensus 137 --~~l~~~~~~~-~~~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~--~d~~~~d~l~~l~~D~~t~~I~ly~ 211 (447)
T TIGR02717 137 --IKLNATFAPT-MPKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNK--ADIDESDLLEYLADDPDTKVILLYL 211 (447)
T ss_pred --CCeeeecCCC-CCCCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCch--hhCCHHHHHHHHhhCCCCCEEEEEe
Confidence 5677777654 4679999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccCCcch-HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHH
Q psy16953 424 EVGGVEE-YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502 (806)
Q Consensus 424 Eigg~~d-~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~ 502 (806)
| +++| ++|++++|+++++||||++|+|||+. |+++++|||||++|+|.+ |+++|||+|+++++|++||++.
T Consensus 212 E--~~~~~~~f~~aa~~a~~~KPVv~~k~Grs~~--g~~aa~sHtgalag~~~~----~~a~~~~~Gv~~~~~~~el~~~ 283 (447)
T TIGR02717 212 E--GIKDGRKFLKTAREISKKKPIVVLKSGTSEA--GAKAASSHTGALAGSDEA----YDAAFKQAGVIRADSIEELFDL 283 (447)
T ss_pred c--CCCCHHHHHHHHHHHcCCCCEEEEecCCChh--hhhhhhhccccccChHHH----HHHHHHHCCeEEeCCHHHHHHH
Confidence 9 9999 99999999998899999999999998 899999999999999987 9999999999999999999999
Q ss_pred HHHHHH
Q psy16953 503 IGSVYK 508 (806)
Q Consensus 503 ~~all~ 508 (806)
++.+..
T Consensus 284 ~~~l~~ 289 (447)
T TIGR02717 284 ARLLSN 289 (447)
T ss_pred HHHHhc
Confidence 976543
No 6
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=2.3e-57 Score=488.00 Aligned_cols=282 Identities=29% Similarity=0.451 Sum_probs=241.1
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--cccccccHHHHhccC--C
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSKN--K 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y~sv~daip~~--~ 270 (806)
++++|+|+|||++++. .+.|++|| |++.|.|.|-..+ .+.. |+|||+|++| +|+. +
T Consensus 26 ~~~~t~v~vqGitg~~g~~h~~~~~~yg-------t~iv~GV~Pgkgg--------~~v~~~Gvpvy~sv~e-a~~~~~~ 89 (317)
T PTZ00187 26 VNKNTKVICQGITGKQGTFHTEQAIEYG-------TKMVGGVNPKKAG--------TTHLKHGLPVFATVKE-AKKATGA 89 (317)
T ss_pred EcCCCeEEEecCCChHHHHHHHHHHHhC-------CcEEEEECCCCCC--------ceEecCCccccCCHHH-HhcccCC
Confidence 7899999999999986 67999988 7888888777643 3444 7999999999 6887 8
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHH-HcCCeEEccCccccccCCccccccCCCCc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAK-EKGVSIIGPATVGGLKPGCFKIGNTGGMM 349 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~-~~giriiGPN~~Gii~p~~~~ig~~~g~~ 349 (806)
|+++| |+ |+..+++++++|.++|||.+||+|+||||.+..++.++++ ++|+||+||||+|++||+.+++|
T Consensus 90 D~avI--~V-Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~g------ 160 (317)
T PTZ00187 90 DASVI--YV-PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIG------ 160 (317)
T ss_pred CEEEE--ec-CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccc------
Confidence 88887 44 6667777788888899999999999999988888877765 58999999999999999866655
Q ss_pred ccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 350 DNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
++|...++||+||+|||||+|++++++++.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+||..
T Consensus 161 --i~p~~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~ 238 (317)
T PTZ00187 161 --IMPGHIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTA 238 (317)
T ss_pred --cCCcCCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCch
Confidence 345455789999999999999999999999999999999999999777999999999999999999999999988887
Q ss_pred hHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHh
Q psy16953 430 EYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 430 d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~ 509 (806)
+++-.+.+++..++||||+||+|||++ ..+.+|||||++.....++++|+++|+|+|+++++|++||.+.++.+++.
T Consensus 239 e~~aa~fi~~~~~~KPVVa~~aGrsap---~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~ 315 (317)
T PTZ00187 239 EEEAAEWIKNNPIKKPVVSFIAGITAP---PGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKK 315 (317)
T ss_pred hHHHHHHHHhhcCCCcEEEEEecCCCC---CCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHh
Confidence 644334444445789999999999985 23446999999955555566699999999999999999999999998876
Q ss_pred h
Q psy16953 510 L 510 (806)
Q Consensus 510 L 510 (806)
+
T Consensus 316 ~ 316 (317)
T PTZ00187 316 K 316 (317)
T ss_pred c
Confidence 5
No 7
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=1.5e-57 Score=488.27 Aligned_cols=272 Identities=27% Similarity=0.442 Sum_probs=237.1
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC--CC
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN--KD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~--~D 271 (806)
.+.+++|+|+|++++. .+.|++|| |++.+.| ||++ |++++ |+|||+|++| +|+. ||
T Consensus 9 ~~~~~~v~~~gi~~~~~~~~~~~~~~yg-------t~~~~gV---~p~~------~~~~i~G~~~y~sv~d-lp~~~~~D 71 (300)
T PLN00125 9 VDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGV---TPKK------GGTEHLGLPVFNTVAE-AKAETKAN 71 (300)
T ss_pred ecCCCeEEEecCCCHHHHHHHHHHHHhC-------CcEEEEE---CCCC------CCceEcCeeccCCHHH-HhhccCCC
Confidence 6789999999999986 77999998 6777665 5553 13566 6999999999 8987 79
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHH-HHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPEN-MTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMD 350 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~-~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~ 350 (806)
++|| ++|+..+++++++|.++|||.+||+|+||+|. +++++.++||++|+||+||||+|++||. .+++.
T Consensus 72 lAvI---~vPa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~-------~~~~~ 141 (300)
T PLN00125 72 ASVI---YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-------ECKIG 141 (300)
T ss_pred EEEE---ecCHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeeccc-------cccee
Confidence 9998 67889999999999999999999999999996 5677777899999999999999999998 34444
Q ss_pred cccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc-
Q psy16953 351 NILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE- 429 (806)
Q Consensus 351 ~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~- 429 (806)
++.+ ..++||+||+|||||+++.++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+|.||..
T Consensus 142 ~~~~-~~~~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~ 220 (300)
T PLN00125 142 IMPG-YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAE 220 (300)
T ss_pred ecCC-CCCCCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchH
Confidence 4443 24679999999999999999999999999999999999999999999999999999999999999999954444
Q ss_pred -h-HHHHHHHHhcCCCCCEEEEEeCcCc-CcCcccccccccCCcC----CCCcccHHHHHHHHHHcCCcccCChhhHHHH
Q psy16953 430 -E-YEVCAALKDKRITKPLVAWCIGTCA-SMFTSEVQFGHAGSCA----NSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502 (806)
Q Consensus 430 -d-~~f~~a~r~~~~~KPVV~lk~Grs~-~~~g~~aa~sHtGala----g~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~ 502 (806)
| ++|+++++ ++||||+||+|||+ . |++ +|||||++ |++.+ |+++|||+|+++++|++||+++
T Consensus 221 ~d~~~f~~aa~---~~KPVV~lk~Grs~~~--g~~--~sHTGala~~~~G~~~~----~~a~~rq~Gvi~v~~~~el~~~ 289 (300)
T PLN00125 221 EDAAAFIKESG---TEKPVVAFIAGLTAPP--GRR--MGHAGAIVSGGKGTAQD----KIKALREAGVTVVESPAKIGVA 289 (300)
T ss_pred HHHHHHHHHhc---CCCCEEEEEecCCCCC--CCC--ccchhhhhcCCCCCHHH----HHHHHHHCCCeEeCCHHHHHHH
Confidence 7 88888765 48999999999997 4 444 59999997 55555 9999999999999999999999
Q ss_pred HHHHHHh
Q psy16953 503 IGSVYKD 509 (806)
Q Consensus 503 ~~all~~ 509 (806)
++.+++.
T Consensus 290 ~~~~~~~ 296 (300)
T PLN00125 290 MLEVFKE 296 (300)
T ss_pred HHHHHHh
Confidence 9999865
No 8
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=5.9e-57 Score=496.20 Aligned_cols=224 Identities=25% Similarity=0.359 Sum_probs=200.4
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCCh-HHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-c
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPP-YVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-G 638 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~-~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G 638 (806)
.|.+... ..+++||++||++||+|.+|++ ..+++||++||||||||+|+|| ||+||++||++|+|+|++|||++| |
T Consensus 151 ~g~~~i~-p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe~NAST-ftarvvaST~sd~ys~i~agi~aL~G 228 (390)
T COG0372 151 RGEPPIA-PDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHELNAST-FTARVVASTGSDLYACIAAGIGALKG 228 (390)
T ss_pred cCCCCcc-CCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHhcCCcHHHHHHHHHHHcCC
Confidence 3544422 2457899999999999999994 9999999999999999999999 999999999999999999999999 9
Q ss_pred cccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCC---CChHHHHHHH
Q psy16953 639 DRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFP---TTPLLNYALE 715 (806)
Q Consensus 639 ~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ 715 (806)
|+||||||+|++||+|+.+..+++++||++.+++|++|||||||||+ ++|||+++|+++++++.. +.++++++.+
T Consensus 229 PlHGGAne~v~~ml~ei~~~~~~~~~~v~~~l~~~~~imGFGHRVYk--~~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~ 306 (390)
T COG0372 229 PLHGGANEAVMKMLEEIGSSGESAEAYVRKALDRKERIMGFGHRVYK--NYDPRAKVLKELAEKLGKELGDLKLYEIAEE 306 (390)
T ss_pred CccCChHHHHHHHHHHHcccchhHHHHHHHHHhCCCCcCCCCCCCCC--CCCchHHHHHHHHHHHHhhcCchhHHHHHHH
Confidence 99999999999999999765556999999999999999999999997 579999999999999953 3479999999
Q ss_pred HHHHHhcC---CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 716 VEKITTSK---KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 716 ve~~~~~~---~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
+|+++.+. .++++||||||+|++|..||+|.. ++|+||++||++||+||++||+..+++|+||
T Consensus 307 ~e~~~l~~~~~~k~l~PNvDfysg~v~~~lGiP~~--------------~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRP 372 (390)
T COG0372 307 LEEIALEDLGFEKKLYPNVDFYSGIVYRALGIPTD--------------MFTPLFAIARTVGWIAHWIEQKEDGNKIIRP 372 (390)
T ss_pred HHHHHHHhhhcccCCCCccccchHHHHHHcCCCHH--------------hhhhhhhhhhHHHHHHHHHHHHhccCCccCC
Confidence 99988651 468999999999999999985544 5568999999999999999999977899999
Q ss_pred CCCcceecCCCCC
Q psy16953 793 PWDDISYVLPEQY 805 (806)
Q Consensus 793 ~~~~i~Y~gp~~~ 805 (806)
++ .|+||+..
T Consensus 373 r~---~Y~G~~~r 382 (390)
T COG0372 373 RA---LYTGPEER 382 (390)
T ss_pred hh---hhcCcccc
Confidence 96 59999863
No 9
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=5.9e-53 Score=448.40 Aligned_cols=245 Identities=25% Similarity=0.351 Sum_probs=221.2
Q ss_pred ccccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 542 KPASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 542 ~~~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
+..+|.|+|++.++++++|||||+.|+++ +.||.++|++||+|+.|++++.+.|+++|+++||||+++|| |++|+++|
T Consensus 5 ~~~~~~T~i~~~~~~~l~yrG~~~~dL~~-~~sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg~~~St-~aar~~as 82 (263)
T PRK06224 5 KTKWWRTSISDVTPEEIYVRGYDLEDLIG-KLSFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPSA-AAARMTAS 82 (263)
T ss_pred CCCCCceeeeeecCCeeEECCccHHHHhh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHh
Confidence 45799999999999999999999999986 69999999999999999999999999999999999999999 99999999
Q ss_pred cCCChHHHHHHhhcccccccCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHH
Q psy16953 622 AGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAAYDA-------GLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVK 694 (806)
Q Consensus 622 a~adl~~avaagl~alG~~hGGA~~~a~~~l~e~~~~-------~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~ 694 (806)
|++|+++|++||++++||+||||+++|++||+++... .++++++|++.++++++|||||||+|+ ++|||++
T Consensus 83 t~~~l~~av~agl~a~G~~hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~--~~DPRa~ 160 (263)
T PRK06224 83 GGESLQGAVAAGLLALGSVHGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHK--PVDPRAP 160 (263)
T ss_pred cCccHHHHHHHHHhhcccccCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCC--CCCchHH
Confidence 9999999999999999999999999999999999732 135677999999999999999999996 4699999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhcC-CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhh
Q psy16953 695 IIKEFVLQNFPTTPLLNYALEVEKITTSK-KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSI 773 (806)
Q Consensus 695 ~L~~~~~~~~~~~~~~~~a~~ve~~~~~~-~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~ 773 (806)
+|+++++++...+++++++.++++++.+. .++++|||||++|+++++||+|. ++++++|+++|++
T Consensus 161 ~L~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~Nvd~~~a~l~~~lG~p~--------------~~~~~lf~~~R~~ 226 (263)
T PRK06224 161 RLLALAREAGVAGRHCRLAEALEAALAAAKGKPLPLNVDGAIAAILADLGFPP--------------ALARGLFVISRAA 226 (263)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHcCCCh--------------HHHhHHHHHHHHH
Confidence 99999999988899999999999988663 35699999999999999998433 4557999999999
Q ss_pred hhHHhHHHHhhcC--CCcccCCCCcceecCCCC
Q psy16953 774 GFIGHYMDQKRLK--QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 774 G~iAH~~Eq~~~~--~~i~Rp~~~~i~Y~gp~~ 804 (806)
||+||++||++++ .+++||+++++.|+||+.
T Consensus 227 G~~AH~~Eq~~~~~~~r~~~~~~~~~~Y~G~~~ 259 (263)
T PRK06224 227 GLVAHVWEELQQPIGFRIWDPAEEAVEYTGPPP 259 (263)
T ss_pred HHHHHHHHHHhCCCCcCCCCChhhcceecCCCC
Confidence 9999999999864 255566788899999975
No 10
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=8.9e-53 Score=463.01 Aligned_cols=250 Identities=24% Similarity=0.275 Sum_probs=214.0
Q ss_pred CCCCCcccchHHhhcccccccccceecccccccc----------------------ccccCCCCccccccCCCCHHHHHH
Q psy16953 523 PPPTVPMDYSWARELGLIRKPASFMTSICDERGQ----------------------ELLYAGMPISDVLKQNMGIGGVLS 580 (806)
Q Consensus 523 P~~~~PMd~~~a~~~g~~r~~~~~~t~i~d~~~~----------------------~i~~~G~~i~~~i~~~~s~~~~~~ 580 (806)
|+..|||++ ++...+..++...+... +....+.++... .+++||++||+
T Consensus 82 p~~~hpm~~--------L~~~vs~l~~~d~~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~~~~~~p~-~~~~s~a~nfl 152 (363)
T cd06108 82 PKDSHPMDV--------MRTGCSMLGCLEPENEFSQQYEIAIRLLAIFPSILLYWYHYSHSGKRIETE-TDEDSIAGHFL 152 (363)
T ss_pred CCCCChHHH--------HHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-CCCCCHHHHHH
Confidence 999999997 55555555544432110 111124455322 34689999999
Q ss_pred HHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHHHHHhcCC
Q psy16953 581 LLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFSAAYDAG 659 (806)
Q Consensus 581 ~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l~e~~~~~ 659 (806)
+|++|++|++.+.++||++|||+||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++. +.
T Consensus 153 ~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St-~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l~~i~-~~ 230 (363)
T cd06108 153 HLLHGKKPGELEIKAMDVSLILYAEHEFNAST-FAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELIERFK-SP 230 (363)
T ss_pred HHhcCCCCCHHHHHHHHHHhhhhccCCCcchH-HHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhC-CH
Confidence 99999999999999999999999999999999 999999999999999999999999 9999999999999999986 46
Q ss_pred CCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCCCccCcHhHHHH
Q psy16953 660 LIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKPNLILNVDGVIA 736 (806)
Q Consensus 660 ~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~~l~pNvD~~~a 736 (806)
++++++|++++++|++|||||||+|+. .|||+++|+++++++. +.+++++++.++|+++.+. ++++||||||+|
T Consensus 231 ~~~~~~v~~~l~~~~~i~GFGHrvyk~--~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~~-~~l~pNvD~~sa 307 (363)
T cd06108 231 EEAEQGLLEKLERKELIMGFGHRVYKE--GDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWEE-KKLFPNLDFYSA 307 (363)
T ss_pred HHHHHHHHHHHhcCCeecCCCCCCCCC--CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCCCcChHHHHH
Confidence 789999999999999999999999974 6999999999999873 5689999999999988664 589999999999
Q ss_pred HHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 737 VAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 737 ~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
+++++||+|. ++++++|++||++||+||++||+.. +.++||+ ..|+||..
T Consensus 308 ~l~~~lG~p~--------------~~~t~iF~i~R~~Gw~AH~~Eq~~~-~~~iRP~---~~Y~G~~~ 357 (363)
T cd06108 308 SAYHFCGIPT--------------ELFTPIFVMSRVTGWAAHIMEQRAN-NRLIRPS---ADYIGPEP 357 (363)
T ss_pred HHHHHcCCCh--------------hhhhhHHHHHHHHHHHHHHHHHHhc-CCCcCcc---ceecCCCC
Confidence 9999998544 4557899999999999999999975 7999998 46999854
No 11
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=1.5e-52 Score=464.18 Aligned_cols=256 Identities=22% Similarity=0.323 Sum_probs=214.4
Q ss_pred CCCCCCCCCcccchHHhhcccccccccceecccccc-----c-------cc----------ccc---CCCCccccccCCC
Q psy16953 519 QPELPPPTVPMDYSWARELGLIRKPASFMTSICDER-----G-------QE----------LLY---AGMPISDVLKQNM 573 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r~~~~~~t~i~d~~-----~-------~~----------i~~---~G~~i~~~i~~~~ 573 (806)
.+..|+++|||++ +++..+.+++..++. . -+ ..| .|.+.... ++++
T Consensus 84 l~~~p~~~hPM~~--------L~~~vs~l~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~~~p-~~~l 154 (384)
T cd06116 84 MDGFRYDAHPMGI--------LISSVAALSTFYPEAKNIGDEEQRNKQIIRLIGKMPTIAAFAYRHRLGLPYVLP-DNDL 154 (384)
T ss_pred HHhcCcCCCcHHH--------HHHHHHhhhhcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC-CCCC
Confidence 4445999999997 555555555443221 0 00 112 36544332 5679
Q ss_pred CHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHH
Q psy16953 574 GIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALND 647 (806)
Q Consensus 574 s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~ 647 (806)
||++||++|+++. +|++...++||++||||||||+|+|| ||+|+++||++|+|+|++||++++ ||+||||+++
T Consensus 155 s~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~ST-faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~ 233 (384)
T cd06116 155 SYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCST-SAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEA 233 (384)
T ss_pred CHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCchh-HHHhhhhccCCCHHHHHHHHHHhccCCcccchHHH
Confidence 9999999999987 78899999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcC-
Q psy16953 648 AAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSK- 723 (806)
Q Consensus 648 a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~- 723 (806)
|++||+++. +.++++++|++.++++++|||||||+|+. .|||+++|+++++++. ..+++++++.++|+++.+.
T Consensus 234 v~~~l~ei~-~~~~~~~~v~~~~~~~~ri~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~~~~~ 310 (384)
T cd06116 234 VLRMLQQIG-SPKNIPDFIETVKQGKERLMGFGHRVYKN--YDPRARIIKKIADEVFEATGRNPLLDIAVELEKIALEDE 310 (384)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHhcCCcccCCCCCCCCC--CChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Confidence 999999986 56789999999999999999999999974 5999999999999884 4578999999999966432
Q ss_pred ---CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcC-CCcccCCCCccee
Q psy16953 724 ---KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLK-QGLYRHPWDDISY 799 (806)
Q Consensus 724 ---~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~-~~i~Rp~~~~i~Y 799 (806)
+++++||||||+|+++++||+|. ++++++|++||++||+||++||++.+ .+++||+ ..|
T Consensus 311 ~~~~k~l~pNvD~ysa~l~~~lGip~--------------~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~---~~Y 373 (384)
T cd06116 311 YFISRKLYPNVDFYSGLIYQALGFPT--------------EAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPR---QVY 373 (384)
T ss_pred hhcccCCCCChHHHHHHHHHHhCCCh--------------hhccchhhhhhhchHHHHHHHHHhCcCCcccCcc---ccc
Confidence 47899999999999999998544 45578999999999999999999864 6899998 469
Q ss_pred cCCCC
Q psy16953 800 VLPEQ 804 (806)
Q Consensus 800 ~gp~~ 804 (806)
+||..
T Consensus 374 ~G~~~ 378 (384)
T cd06116 374 TGPRD 378 (384)
T ss_pred cCCCC
Confidence 99853
No 12
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=1.8e-52 Score=444.34 Aligned_cols=234 Identities=24% Similarity=0.344 Sum_probs=207.7
Q ss_pred ccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCC---------------ChHHHHHHHHHhhhccCC
Q psy16953 544 ASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQL---------------PPYVCKFLEMSLMVTADH 606 (806)
Q Consensus 544 ~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~---------------~~~~~~~l~~~Lvl~ADH 606 (806)
...+|.|+...++ .++||||||.|+.+ +.+|.++.++||+|+.| ++.++++||++||++|||
T Consensus 7 ~~~~t~is~id~~~g~l~yRGy~i~dL~~-~~~f~ev~~LL~~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDH 85 (265)
T cd06101 7 AALESEISVIDGDEGGLRYRGYPIEELAE-NSSFEEVAYLLLTGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADH 85 (265)
T ss_pred ceeeeEEEEEeCCCCEEEECCeeHHHHHh-cCCHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCC
Confidence 3456666665554 69999999998886 68999999999988875 678899999999999999
Q ss_pred CCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHHHHHhcC-CCCHHHHHHHHHhcCCcccccCCCCC
Q psy16953 607 GPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFSAAYDA-GLIPMEFVNEMRKKGKLIMGIGHRVK 684 (806)
Q Consensus 607 g~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l~e~~~~-~~~~~~~v~~~~~~~~~ipGfGH~vy 684 (806)
|+|+|| |++|+++||++|+|+|++||++++ ||+||||++.+++||+++.+. .++++++|.+.++++++|||||||+|
T Consensus 86 g~naST-~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~~~~~~~~~v~~~~~~~~~i~GFGH~vy 164 (265)
T cd06101 86 EGNAST-FTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTPKNEPAEAYIRKKLNSKRVLMGFGHRVY 164 (265)
T ss_pred CCchHH-HHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCccccccHHHHHHHHHhcCCCccCCCCCCC
Confidence 999999 899999999999999999999999 999999999999999999642 26889999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhcCC--CCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhh
Q psy16953 685 SINNPDMRVKIIKEFVLQNFP---TTPLLNYALEVEKITTSKK--PNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVE 759 (806)
Q Consensus 685 ~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ve~~~~~~~--~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~ 759 (806)
+. .|||++.|+++++++.. .+++++++.++|+++.+.. ++++||||||+|+++++||+|.
T Consensus 165 ~~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvd~~~a~v~~~lG~p~------------- 229 (265)
T cd06101 165 KK--YDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYEKKLYPNVDFYSGVLYKAMGFPT------------- 229 (265)
T ss_pred CC--CCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHhCCCh-------------
Confidence 74 69999999999999864 5899999999999886643 6899999999999999998544
Q ss_pred ccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCC
Q psy16953 760 MGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWD 795 (806)
Q Consensus 760 ~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~ 795 (806)
++++++|+++|++||+||++||+.++.+++||+..
T Consensus 230 -~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~ 264 (265)
T cd06101 230 -ELFTPLFAVSRAVGWLAHLIEQREDGQRIIRPRAE 264 (265)
T ss_pred -HhhhhHHHHHhHhHHHHHHHHHHhcCCCccCCCcc
Confidence 44568999999999999999999886699999853
No 13
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=1.1e-52 Score=463.91 Aligned_cols=250 Identities=24% Similarity=0.302 Sum_probs=213.1
Q ss_pred CCCCCcccchHHhhcccccccccceecccccccc-------------------------ccccCCCCccccccCCCCHHH
Q psy16953 523 PPPTVPMDYSWARELGLIRKPASFMTSICDERGQ-------------------------ELLYAGMPISDVLKQNMGIGG 577 (806)
Q Consensus 523 P~~~~PMd~~~a~~~g~~r~~~~~~t~i~d~~~~-------------------------~i~~~G~~i~~~i~~~~s~~~ 577 (806)
|+.+|||+. +++..+.++++.++..+ +...+|.++.. -.+++||++
T Consensus 91 p~~~hPM~~--------L~~~vs~l~~~d~~~~~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~~~~~~p-~~~~ls~a~ 161 (378)
T PRK12351 91 PAAAHPMDV--------MRTGVSVLGCLLPEKEDHNFSGARDIADRLLASLGSILLYWYHYSHNGRRIEV-ETDDDSIGG 161 (378)
T ss_pred CccCCHHHH--------HHHHHHhhcccCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC-CCCcCCHHH
Confidence 999999997 55555555554433110 01113455531 133589999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHHHHHh
Q psy16953 578 VLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFSAAY 656 (806)
Q Consensus 578 ~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l~e~~ 656 (806)
||++|++|++|++.++++||++||||||||+|+|| ||+|+++||++|+|+|++||++++ ||+||||++.|++||+++.
T Consensus 162 Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST-~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~ml~~i~ 240 (378)
T PRK12351 162 HFLHLLHGKKPSESWVKAMHTSLILYAEHEFNAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYD 240 (378)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHH-HHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 899999999999999999999999 9999999999999999985
Q ss_pred cCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCCCccCcHhH
Q psy16953 657 DAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKPNLILNVDG 733 (806)
Q Consensus 657 ~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~~l~pNvD~ 733 (806)
+.++++++|++.+++|++|||||||+|+. .|||+++|+++++++. +.++++++++++|+++.+. ++++|||||
T Consensus 241 -~~~~~~~~v~~~l~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~~-k~l~pNvD~ 316 (378)
T PRK12351 241 -TPDEAEADIRRRVENKEVVIGFGHPVYTI--SDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWEE-KKMFPNLDW 316 (378)
T ss_pred -CHHHHHHHHHHHHhCCCccccCCCCCCCC--CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCCChHH
Confidence 56789999999999999999999999974 5999999999999863 4579999999999988664 489999999
Q ss_pred HHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 734 VIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 734 ~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
|+|+++++||+|. ++++++|++||++||+||++||++. +.++||+. .|+||..
T Consensus 317 ysg~l~~~lG~p~--------------~~~t~lF~~sR~~Gw~AH~~Eq~~~-~~~iRP~~---~Y~G~~~ 369 (378)
T PRK12351 317 FSAVSYHMMGVPT--------------AMFTPLFVISRTTGWAAHVIEQRQD-NKIIRPSA---NYTGPED 369 (378)
T ss_pred HHHHHHHHcCCCH--------------HhhhhHHHHHHHHHHHHHHHHHHhc-CCccCCcc---eecCCCC
Confidence 9999999998544 4456899999999999999999976 68999984 6999854
No 14
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=1.4e-52 Score=467.05 Aligned_cols=222 Identities=21% Similarity=0.258 Sum_probs=197.6
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
.|.+.... ++++||++||++|+++. +|++..+++||++||||||||+|+|| ||+|+++||++|+|+|++||++
T Consensus 170 ~g~~~~~p-~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~~naST-faarv~aSt~ad~ysav~agi~ 247 (410)
T cd06115 170 AGRPPNLP-SQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHEMNCST-AAVRHLASSGVDVYTAVAGAVG 247 (410)
T ss_pred cCCCCcCC-CCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccCCCchH-HHHHHHHhcCCCHHHHHHHHHh
Confidence 35554322 45789999999999987 78889999999999999999999999 9999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHH
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLN 711 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~ 711 (806)
++ ||+||||+++|++||+++. +.++++++|++++++|++|||||||+|+. .|||+++|+++++++. +.+++++
T Consensus 248 aL~GplHGGA~e~v~~~l~ei~-~~~~~~~~v~~~~~~~~ri~GFGHrvYk~--~DPRa~~L~~~~~~l~~~~~~~~~~~ 324 (410)
T cd06115 248 ALYGPLHGGANEAVLRMLAEIG-TVENIPAFIEGVKNRKRKLSGFGHRVYKN--YDPRAKIIKKLADEVFEIVGKDPLIE 324 (410)
T ss_pred hccCCcccchHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCcccCCCCCCCCC--CCccHHHHHHHHHHHHhhcCCcHHHH
Confidence 99 9999999999999999995 56799999999999999999999999975 5999999999999974 4579999
Q ss_pred HHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcC-
Q psy16953 712 YALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLK- 786 (806)
Q Consensus 712 ~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~- 786 (806)
++.++|+++.+. +++++||||||+|+++++||+|. ++++++|++||++||+|||+||+..+
T Consensus 325 ~a~~~e~~~~~~~~~~~k~l~pNVD~ysa~l~~~lG~p~--------------~~~t~lFa~sR~~Gw~AH~~Eq~~~~~ 390 (410)
T cd06115 325 IAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPT--------------DFFPVLFAIPRMAGYLAHWRESLDDPD 390 (410)
T ss_pred HHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHcCCCh--------------HhhhhHHHHHhhhhHHHHHHHHHhCCC
Confidence 999999976442 36899999999999999998544 45578999999999999999999864
Q ss_pred CCcccCCCCcceecCCCC
Q psy16953 787 QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 787 ~~i~Rp~~~~i~Y~gp~~ 804 (806)
++++||+. .|+||..
T Consensus 391 ~~i~RP~~---~Y~G~~~ 405 (410)
T cd06115 391 TKIMRPQQ---LYTGVWL 405 (410)
T ss_pred CcccCccc---ccCCCCC
Confidence 68999984 6999854
No 15
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=3.2e-52 Score=461.10 Aligned_cols=213 Identities=20% Similarity=0.307 Sum_probs=195.5
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||++||++|++|++|++.++++||++||+|||||+|+|| ||+|+++||++|+|+|++||++++ ||+||||+++|
T Consensus 149 ~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST-~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v 227 (377)
T PRK14036 149 RDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINAST-FSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDV 227 (377)
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHHccCccccChHHHH
Confidence 4679999999999999999999999999999999999999999 999999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcC--
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSK-- 723 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~-- 723 (806)
++||+++. +.+++++||++.+++|++|||||||+|+. .|||+++|+++++++. ..++++++++++|+++.+.
T Consensus 228 ~~ml~~i~-~~~~~~~~v~~~~~~~~~i~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~ 304 (377)
T PRK14036 228 LAMLEEIG-SVENVRPYLDERLANKQKIMGFGHREYKV--KDPRATILQKLAEELFARFGHDEYYEIALELERVAEERLG 304 (377)
T ss_pred HHHHHHhC-ChhhHHHHHHHHHHCCCceecCCCCCCCC--CCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Confidence 99999985 56899999999999999999999999975 5999999999999874 5789999999999988653
Q ss_pred CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCC
Q psy16953 724 KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPE 803 (806)
Q Consensus 724 ~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~ 803 (806)
+++++||||||+|+++++||+|. ++++++|++||++||+||++||+.. +.++||+. .|+||.
T Consensus 305 ~k~l~pNvD~~sa~l~~~lGip~--------------~~~t~lf~~sR~~Gw~AH~~Eq~~~-~~l~RP~~---~Y~G~~ 366 (377)
T PRK14036 305 PKGIYPNVDFYSGLVYRKLGIPR--------------DLFTPIFAIARVAGWLAHWREQLGA-NRIFRPTQ---IYTGSH 366 (377)
T ss_pred cCCCCcChHHHHHHHHHHcCCCh--------------hhhhhHHHHHhHHHHHHHHHHHHhc-CcccCCCc---eecCCC
Confidence 46899999999999999998544 4557899999999999999999985 79999984 599995
Q ss_pred C
Q psy16953 804 Q 804 (806)
Q Consensus 804 ~ 804 (806)
.
T Consensus 367 ~ 367 (377)
T PRK14036 367 N 367 (377)
T ss_pred C
Confidence 4
No 16
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=6e-52 Score=441.48 Aligned_cols=232 Identities=25% Similarity=0.306 Sum_probs=213.5
Q ss_pred ccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCC-------------------------------ChHH
Q psy16953 544 ASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQL-------------------------------PPYV 592 (806)
Q Consensus 544 ~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~-------------------------------~~~~ 592 (806)
..|.|.|+...+++++|||+|+.++++ +.+|.++..++|+++.| ++.+
T Consensus 19 ~~~~t~It~i~~~~~~yRG~da~~L~~-~~~~e~va~LLw~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (282)
T cd06102 19 PVLESAITLITEGRLFYRGRDAVELAE-TATLEEVAALLWDGDEAARLLRLLAAALLGAAPSDAPVHRRLARAWGLDPAA 97 (282)
T ss_pred ceEEeeeEEEeCCeeEEcCccHHHHHh-cCCHHHHHHHHHcCCchHHHHHHHHHHhccCCCCcccHHHHHHHHhcCCHHH
Confidence 478999999988999999999988886 68999999999999988 7888
Q ss_pred HHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q psy16953 593 CKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRK 671 (806)
Q Consensus 593 ~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~ 671 (806)
+++||++||++||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+ .++++++|+++++
T Consensus 98 ~~~l~~~LVL~ADHgln~St-~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~-~~~~~~~v~~~l~ 175 (282)
T cd06102 98 ADLLRRALVLLADHELNAST-FAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEALR-AGDAEAAVRERLR 175 (282)
T ss_pred HHHHHHHHHHHhccCCCcHH-HHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 99999999999999999999 899999999999999999999999 99999999999999999964 5689999999999
Q ss_pred cCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCCh
Q psy16953 672 KGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTR 751 (806)
Q Consensus 672 ~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ 751 (806)
+|++|||||||+|+ +.|||+++|+++++++.. ++++++.++|+++.+. ++++|||||++++++++||+|.
T Consensus 176 ~g~~ipGFGH~vy~--~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~~-~gl~pNvD~a~a~l~~~lG~p~----- 245 (282)
T cd06102 176 RGEALPGFGHPLYP--DGDPRAAALLAALRPLGP--AAPPAARALIEAARAL-TGARPNIDFALAALTRALGLPA----- 245 (282)
T ss_pred cCCcccCCCCCCCC--CCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH-HCCCCChHHHHHHHHHHcCCCh-----
Confidence 99999999999996 469999999999999876 9999999999988664 4799999999999999998544
Q ss_pred HHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecC
Q psy16953 752 EEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVL 801 (806)
Q Consensus 752 ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~g 801 (806)
++++++|++||++||+||++||+++ +.++||+. .|+|
T Consensus 246 ---------~~~~~lF~~~R~~GwiAH~~Eq~~~-~~liRP~~---~Y~G 282 (282)
T cd06102 246 ---------GAAFALFALGRSAGWIAHALEQRAQ-GKLIRPRA---RYVG 282 (282)
T ss_pred ---------hhcchHHHHHHHHHHHHHHHHHHhc-CCCcCCCc---ccCC
Confidence 4557999999999999999999997 79999995 5876
No 17
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=4.2e-52 Score=458.55 Aligned_cols=211 Identities=23% Similarity=0.291 Sum_probs=192.8
Q ss_pred CCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHH
Q psy16953 571 QNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAA 649 (806)
Q Consensus 571 ~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~ 649 (806)
+++||++||++|++|++|++.+.++||++|||+||||+|+|| ||+|+++||++|+|+|++||++++ ||+||||++.|+
T Consensus 146 ~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST-~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~ 224 (366)
T cd06117 146 DDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAF 224 (366)
T ss_pred CcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHH-HHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHH
Confidence 358999999999999999999999999999999999999999 999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCCC
Q psy16953 650 IQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKPN 726 (806)
Q Consensus 650 ~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~~ 726 (806)
+||+++. +.+++++++++++++|++|||||||+|+. .|||+++|+++++++. ...++++++.++|+++.+. ++
T Consensus 225 ~~l~~i~-~~~~~~~~i~~~~~~~~~i~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~~-k~ 300 (366)
T cd06117 225 EIQQRYE-SADEAEADIRRRVENKEVVIGFGHPVYTI--ADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWEE-KK 300 (366)
T ss_pred HHHHHhC-CHHHHHHHHHHHHhcCCcccCCCCCCCCC--CCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-hC
Confidence 9999985 46789999999999999999999999975 5999999999999985 4578899999999988654 48
Q ss_pred ccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 727 LILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 727 l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
++||||||+|+++++||+|.+ +++++|++||++||+||++||++. +.++||+. .|+||..
T Consensus 301 l~pNvD~~s~~l~~~lG~p~~--------------~~t~lf~isR~~Gw~AH~~Eq~~~-~~~~RP~~---~Y~G~~~ 360 (366)
T cd06117 301 MFPNLDWFSAVSYHMMGVPTA--------------MFTPLFVIARTTGWSAHIIEQRQD-GKIIRPSA---NYTGPED 360 (366)
T ss_pred CCcCcHHHHHHHHHHcCcChh--------------hhhHHHHHHHHHHHHHHHHHHHhc-CCCccccc---eecCCCC
Confidence 999999999999999985444 456899999999999999999885 79999984 5999854
No 18
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=1.4e-51 Score=459.29 Aligned_cols=222 Identities=23% Similarity=0.350 Sum_probs=195.6
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
+|.+.... ++++||++||++|++|. +|++..+++||++||||||||+|+|| |++|+++||++|+|+|++||++
T Consensus 170 ~g~~~i~p-~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST-faaRv~aSt~ad~ysav~agi~ 247 (412)
T TIGR01798 170 IGQPFVYP-RNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHEQNAST-STVRLAGSSGANPFACIAAGIA 247 (412)
T ss_pred CCCCCcCC-CCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCCCCccc-ceeeeeecCCCCHHHHHHHHhh
Confidence 45544322 45789999999999997 78888999999999999999999999 9999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcC--CcccccCCCCCCCCCCChHHHHHHHHHHHhC-----CCC
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKG--KLIMGIGHRVKSINNPDMRVKIIKEFVLQNF-----PTT 707 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~--~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~-----~~~ 707 (806)
++ ||+||||+++|++||+++. +++++++||+++++++ ++|||||||+|+. .|||+++|+++++++. ..+
T Consensus 248 aL~GplHGGA~e~v~~ml~ei~-~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~--~DPRa~~L~~~a~~l~~~~g~~~~ 324 (412)
T TIGR01798 248 ALWGPAHGGANEAALKMLEEIG-SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKN--YDPRAKVMRETCHEVLKELGLHDD 324 (412)
T ss_pred hccCccccchHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCccccCCCCCCCCC--CCccHHHHHHHHHHHHHHcCCCcc
Confidence 99 9999999999999999995 4679999999999888 4999999999974 6999999999988762 247
Q ss_pred hHHHHHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHh
Q psy16953 708 PLLNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQK 783 (806)
Q Consensus 708 ~~~~~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~ 783 (806)
+++++++++|+++.+. +++++||||||+|+++++||+|.+ +++++|++||++||+|||+||+
T Consensus 325 ~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~--------------~~t~lFaisR~~Gw~AH~~Eq~ 390 (412)
T TIGR01798 325 PLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKAMGIPTS--------------MFTVIFALARTVGWISHWSEMI 390 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHHcCCChh--------------hhhhHHHHHhhhhHHHHHHHHH
Confidence 8999999999966432 468999999999999999985554 4568999999999999999999
Q ss_pred hcC-CCcccCCCCcceecCCCC
Q psy16953 784 RLK-QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 784 ~~~-~~i~Rp~~~~i~Y~gp~~ 804 (806)
..+ ++|+||+. .|+||..
T Consensus 391 ~~~~~~l~RP~~---~Y~G~~~ 409 (412)
T TIGR01798 391 SDPGQKIGRPRQ---LYTGEEQ 409 (412)
T ss_pred hCCCCcccCchh---ccCCCCC
Confidence 864 69999984 6999975
No 19
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=9.1e-52 Score=456.34 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=198.1
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... .++++||++||++|++|++|++.++++||++||++||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 139 ~g~~~~~-p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST-~aaRv~aSt~~d~ysav~agi~al~Gp 216 (372)
T PRK14034 139 KGLDPVE-PRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNAST-FTARVCVATLSDVYSGITAAIGALKGP 216 (372)
T ss_pred CCCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccH-HHHHHHhccCCcHHHHHHHHhcccCCC
Confidence 3544332 25679999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEV 716 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~v 716 (806)
+||||++.|++||+++. +.++++++|++.+++|++|||||||+|+. .|||+++|+++++++. +.+++++++.++
T Consensus 217 lHGGA~e~~~~~l~~i~-~~~~~~~~v~~~~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~ 293 (372)
T PRK14034 217 LHGGANENVMKMLTEIG-EEENVESYIHNKLQNKEKIMGFGHRVYRQ--GDPRAKHLREMSKRLTVLLGEEKWYNMSIKI 293 (372)
T ss_pred ccCCHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCcccCCCCCCCC--CCcCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999996 46789999999999999999999999974 6999999999999885 457999999999
Q ss_pred HHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCc
Q psy16953 717 EKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDD 796 (806)
Q Consensus 717 e~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~ 796 (806)
|+++.+. ++++||||||+|+++++||+|. ++++++|++||++||+||++||+.. ++++||+
T Consensus 294 e~~~~~~-k~l~pNvD~~~a~l~~~lG~p~--------------~~~t~lf~i~R~~Gw~AH~~Eq~~~-~~l~Rp~--- 354 (372)
T PRK14034 294 EEIVTKE-KGLPPNVDFYSASVYHCLGIDH--------------DLFTPIFAISRMSGWLAHILEQYEN-NRLIRPR--- 354 (372)
T ss_pred HHHHHHc-CCCCCChHHHHHHHHHHcCCCh--------------HhccchhHHHhHHHHHHHHHHHHhc-CCccCCC---
Confidence 9988664 5899999999999999998544 4557899999999999999999986 7999998
Q ss_pred ceecCCCC
Q psy16953 797 ISYVLPEQ 804 (806)
Q Consensus 797 i~Y~gp~~ 804 (806)
..|+||..
T Consensus 355 ~~Y~G~~~ 362 (372)
T PRK14034 355 ADYVGPTH 362 (372)
T ss_pred ceecCCCC
Confidence 46999854
No 20
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=5.6e-52 Score=457.87 Aligned_cols=220 Identities=20% Similarity=0.220 Sum_probs=198.4
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... .++++||++||++|++|++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 139 ~g~~~~~-p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST-~aaRv~aSt~ad~~sav~Agi~al~Gp 216 (371)
T PRK14035 139 QGKEPLK-PRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNAST-FTARCAVSSLSDMYSGVVAAVGSLKGP 216 (371)
T ss_pred CCCCCCC-CCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHhccCc
Confidence 4554432 24578999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEV 716 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~v 716 (806)
+||||++.|++||+++. +.+++++||++++++|++|||||||+|+. .|||+++|+++++++. ..+++++++.++
T Consensus 217 lHGGA~e~v~~~l~~i~-~~~~~~~~v~~~~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~i 293 (371)
T PRK14035 217 LHGGANERVMDMLSEIR-SIGDVDAYLDEKFANKEKIMGFGHRVYKD--GDPRAKYLREMSRKITKGTGREELFEMSVKI 293 (371)
T ss_pred cccChHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCcccCCCCCCCCC--CCccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999999999996 46799999999999999999999999974 6999999999999985 567999999999
Q ss_pred HHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCc
Q psy16953 717 EKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDD 796 (806)
Q Consensus 717 e~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~ 796 (806)
|+++.+. ++++||||||+|+++++||+|. ++++++|++||++||+||++||++. ++|+||+.
T Consensus 294 e~~~~~~-k~l~pNvD~~s~~l~~~lG~p~--------------~~~t~lf~i~R~~Gw~AH~~Eq~~~-~~l~RP~~-- 355 (371)
T PRK14035 294 EKRMKEE-KGLIPNVDFYSATVYHVMGIPH--------------DLFTPIFAVSRVAGWIAHILEQYKD-NRIMRPRA-- 355 (371)
T ss_pred HHHHHHh-cCCCCChHHHHHHHHHHcCCCh--------------HhhhhHHHHHhHHHHHHHHHHHHhc-CCccCCCc--
Confidence 9988664 5899999999999999998544 4557899999999999999999985 79999994
Q ss_pred ceecCCCC
Q psy16953 797 ISYVLPEQ 804 (806)
Q Consensus 797 i~Y~gp~~ 804 (806)
.|+||..
T Consensus 356 -~Y~G~~~ 362 (371)
T PRK14035 356 -KYIGETN 362 (371)
T ss_pred -cccCCCC
Confidence 6999953
No 21
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-51 Score=454.15 Aligned_cols=222 Identities=24% Similarity=0.287 Sum_probs=195.5
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
.|.+.... ++++||++||++|++|+.|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 139 ~g~~~~~p-~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST-~aarv~aSt~ad~ysav~agi~al~Gp 216 (377)
T PRK14037 139 EGNKPRIP-EPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPAST-TAALVAASTLSDMYSCITAALAALKGP 216 (377)
T ss_pred cCCCCCCC-CCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHh-HHHHHhhccCCCHHHHHHHHHHhccCc
Confidence 45555432 4579999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhc-CCcccccCCCCCCCCCCChHHHHHHHHHHHhC---C-CChHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKK-GKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---P-TTPLLNYAL 714 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~-~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~-~~~~~~~a~ 714 (806)
+||||+++|++||+++. +.+++.+|+++.+.+ +++|||||||+|+. .|||+++|+++++++. + .+++++++.
T Consensus 217 lHGGA~e~v~~~l~ei~-~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~--~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~ 293 (377)
T PRK14037 217 LHGGAAEEAFKQFVEIG-DPNNVEMWFNDKIINGKKRLMGFGHRVYKT--YDPRAKIFKELAETLIERNSEAKKYFEIAQ 293 (377)
T ss_pred ccCChHHHHHHHHHHhc-ChhhHHHHHHHHHhcCCCeecCCCCCCCCC--CCccHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 99999999999999985 467889999876554 48999999999974 6999999999999974 2 478999999
Q ss_pred HHHHHHhcC--CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTSK--KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~~--~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+. .++++||||||+|+++++||+|. ++++++|++||++||+||++||+.++++++||
T Consensus 294 ~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~--------------~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP 359 (377)
T PRK14037 294 KLEELGIKQFGSKGIYPNTDFYSGIVFYALGFPV--------------YMFTALFALSRTLGWLAHIIEYVEEQHRLIRP 359 (377)
T ss_pred HHHHHHHHHhhccCCCCChHHHHHHHHHHcCCCh--------------hhcchhHHhhhhhHHHHHHHHHHhcCCccccC
Confidence 999987542 46899999999999999998544 45578999999999999999999876799999
Q ss_pred CCCcceecCCCC
Q psy16953 793 PWDDISYVLPEQ 804 (806)
Q Consensus 793 ~~~~i~Y~gp~~ 804 (806)
+. .|+||..
T Consensus 360 ~~---~Y~G~~~ 368 (377)
T PRK14037 360 RA---LYVGPEH 368 (377)
T ss_pred cc---eecCCCC
Confidence 84 6999864
No 22
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=2.2e-51 Score=454.62 Aligned_cols=221 Identities=20% Similarity=0.296 Sum_probs=199.0
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+.... ++++||++||++|++|++|++..+++||++||++||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 140 ~g~~~~~p-~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~ST-faaRvvaSt~ad~~s~~~aai~al~Gp 217 (373)
T cd06112 140 NGDDPIEP-RPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNAST-FSALVTGSTLADPYAVISSAIGTLSGP 217 (373)
T ss_pred CCCCCcCC-CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHhccCc
Confidence 56554332 4679999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCC----CChHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFP----TTPLLNYALE 715 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~----~~~~~~~a~~ 715 (806)
+||||+++|++||+++. +.+++++||++.+++|++|||||||+|+. .|||+++|+++++++.. .+++++++.+
T Consensus 218 lHGGA~e~~~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GfGH~vyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~ 294 (373)
T cd06112 218 LHGGANEDVLEMLEEIG-SPENVKAYLDKKLANKQKIWGFGHRVYKT--KDPRATILQKLAEDLFAKMGELSKLYEIALE 294 (373)
T ss_pred cccchHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCeeeCCCCccCCC--CCcHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 99999999999999985 56799999999999999999999999975 59999999999999853 5789999999
Q ss_pred HHHHHhcC--CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCC
Q psy16953 716 VEKITTSK--KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHP 793 (806)
Q Consensus 716 ve~~~~~~--~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~ 793 (806)
+|+++.+. +++++||||||+|+++++||+|. ++++++|++||++||+||++||+.. ++++||+
T Consensus 295 ~e~~~~~~~~~k~l~pNvd~~s~~l~~~lG~p~--------------~~~t~lF~isR~~Gw~AH~~Eq~~~-~~l~RP~ 359 (373)
T cd06112 295 VERLCEELLGHKGVYPNVDFYSGIVYKELGIPA--------------DLFTPIFAVARVAGWLAHWKEQLGD-NRIFRPT 359 (373)
T ss_pred HHHHHHHHhCcCCCCcChHHHHHHHHHHhCcCh--------------HhhchHHHHHhHHHHHHHHHHHHhc-cCccCCC
Confidence 99988663 46899999999999999998544 4557899999999999999999986 7899999
Q ss_pred CCcceecCCCC
Q psy16953 794 WDDISYVLPEQ 804 (806)
Q Consensus 794 ~~~i~Y~gp~~ 804 (806)
. .|+||..
T Consensus 360 ~---~YvG~~~ 367 (373)
T cd06112 360 Q---IYIGEID 367 (373)
T ss_pred c---eecCCCC
Confidence 4 6999954
No 23
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=1.7e-51 Score=451.49 Aligned_cols=210 Identities=23% Similarity=0.257 Sum_probs=192.6
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||++||++|++|++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|
T Consensus 133 ~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST-~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v 211 (349)
T cd06109 133 DPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNAST-FTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPV 211 (349)
T ss_pred CCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchh-hHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHH
Confidence 4578999999999999999999999999999999999999999 899999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc------
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTS------ 722 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~~~------ 722 (806)
++||+++. +.+++++||++.+++|++|||||||+|+. .|||+++|+++++++...++++++++++|+++.+
T Consensus 212 ~~~l~ei~-~~~~~~~~v~~~l~~~~~i~GfGH~vyk~--~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~ 288 (349)
T cd06109 212 LDMLDAIG-TPENAEAWLREALARGERLMGFGHRVYRV--RDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYK 288 (349)
T ss_pred HHHHHHhC-ChhhHHHHHHHHHHcCCeecCCCCCCCCC--CCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999996 46789999999999999999999999975 5999999999999999889999999999986532
Q ss_pred CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecC
Q psy16953 723 KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVL 801 (806)
Q Consensus 723 ~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~g 801 (806)
..++++||||||+|+++++||+|. ++++++|++||++||+||++||++. +.++||+. .|+|
T Consensus 289 ~~r~l~pNvD~~sg~l~~~lGip~--------------~~~t~lF~isR~~Gw~AH~~Eq~~~-~~~~RP~~---~Y~G 349 (349)
T cd06109 289 PGRPLETNVEFYTALLLEALGLPR--------------EAFTPTFAAGRTAGWTAHVLEQART-GRLIRPQS---RYVG 349 (349)
T ss_pred CCCCCCCCchhhHHHHHHHhCCCh--------------hhhhhHHHHHhHHHHHHHHHHHHhc-CCCcCCCc---ccCC
Confidence 146899999999999999998544 4557899999999999999999985 79999995 5776
No 24
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=4.4e-51 Score=446.69 Aligned_cols=211 Identities=23% Similarity=0.284 Sum_probs=194.0
Q ss_pred cCCCCHHHHHHHHHhcC---CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChH
Q psy16953 570 KQNMGIGGVLSLLWFQR---QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~---~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~ 645 (806)
++++||++||++|++|. +|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+
T Consensus 129 ~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg~naST-faaRv~aSt~adlysav~agi~aL~GplHGGA~ 207 (353)
T PRK12350 129 QREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHGMNAST-FTARVIASTGADVAAALSGAIGALSGPLHGGAP 207 (353)
T ss_pred CCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCCCCcch-HHHHHHhccCCcHHHHHHHHHhhcCCCcccChH
Confidence 45789999999999998 88999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc---
Q psy16953 646 NDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTS--- 722 (806)
Q Consensus 646 ~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~~~--- 722 (806)
+.|++||+++. +++++++||++++++|++|||||||+|+. .|||+++|+++++++. +++++++.++|+++.+
T Consensus 208 e~v~~ml~ei~-~~~~~~~~v~~~l~~~~ri~GFGHrvYk~--~DPRa~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~ 282 (353)
T PRK12350 208 ARVLPMLDAVE-RTGDARGWVKGALDRGERLMGFGHRVYRA--EDPRARVLRATAKRLG--APRYEVAEAVEQAALAELR 282 (353)
T ss_pred HHHHHHHHHhC-ChhhHHHHHHHHHHCCCccccCCCCCCCC--CCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHH
Confidence 99999999995 57899999999999999999999999974 5999999999999986 6999999999998755
Q ss_pred C---CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCccee
Q psy16953 723 K---KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISY 799 (806)
Q Consensus 723 ~---~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y 799 (806)
+ +++|+||||||+|+++++||+|.++ ++++|++||++||+||++||++. +.++||+. .|
T Consensus 283 ~~~~~r~l~pNVDfysa~v~~~lGip~~~--------------ft~lFai~R~~Gw~AH~~Eq~~~-~~i~RP~~---~Y 344 (353)
T PRK12350 283 ERRPDRPLETNVEFWAAVLLDFAGVPAHM--------------FTAMFTCGRTAGWSAHILEQKRT-GRLVRPSA---RY 344 (353)
T ss_pred HhcCCCCCCcChHHHHHHHHHHcCcChhh--------------hcchHHhhhHHHHHHHHHHHHhc-CCCcCCCc---ce
Confidence 1 4689999999999999999865554 56899999999999999999986 79999984 69
Q ss_pred cCCCC
Q psy16953 800 VLPEQ 804 (806)
Q Consensus 800 ~gp~~ 804 (806)
+||..
T Consensus 345 ~G~~~ 349 (353)
T PRK12350 345 VGPAP 349 (353)
T ss_pred eCCCC
Confidence 99975
No 25
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=1.6e-51 Score=455.72 Aligned_cols=219 Identities=22% Similarity=0.282 Sum_probs=194.7
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
+|.+.... ++++||++||++|+++. +|++..+++||++||||||||+|+|| |++|+++||++|+|+|++||++
T Consensus 150 ~g~~~~~P-~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST-~aaRv~aSt~ad~~s~v~aai~ 227 (382)
T cd06107 150 IGRPFVYP-RANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHEMNCST-SAARHTGSSLADPISCMAAAIA 227 (382)
T ss_pred CCCCCCCC-CCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccCCcchh-HHHHHHHhcCCcHHHHHHHHHh
Confidence 45544332 56799999999999986 48889999999999999999999999 8999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHH
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLN 711 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~ 711 (806)
++ ||+||||+++|++||+++. +.++++++|++++++|++|||||||+|+. .|||+.+|+++++++. ..+++++
T Consensus 228 al~GplHGGA~e~v~~~l~ei~-~~~~~~~~v~~~~~~~~ri~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~ 304 (382)
T cd06107 228 ALYGPLHGGANEAALKMLREIG-TPENVPAFIERVKNGKRRLMGFGHRVYKN--YDPRAKVIREILHEVLTEVEKDPLLK 304 (382)
T ss_pred hccCCcccchHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCCcCCCCCCCCCC--CCccHHHHHHHHHHHHHhcCCcHHHH
Confidence 99 9999999999999999996 56789999999999999999999999974 5999999999999885 3589999
Q ss_pred HHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcC-
Q psy16953 712 YALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLK- 786 (806)
Q Consensus 712 ~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~- 786 (806)
++.++|+++.++ .++++||||||+|+++++||+|. ++++++|++||++||+|||+||+..+
T Consensus 305 ~a~~ie~~~~~~~~~~~k~l~pNvD~~sa~~~~~lG~p~--------------~~~t~lf~~sR~~Gw~AH~~Eq~~~~~ 370 (382)
T cd06107 305 VAMELERIALEDEYFVSRKLYPNVDFYSGFIYKALGFPP--------------EFFTVLFAVARTSGWMAHWREMMEDPL 370 (382)
T ss_pred HHHHHHHHHHHHhhhccCCCCcChHHHHHHHHHHcCCCh--------------hhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999965432 46899999999999999998544 45578999999999999999999876
Q ss_pred CCcccCCCCcceecC
Q psy16953 787 QGLYRHPWDDISYVL 801 (806)
Q Consensus 787 ~~i~Rp~~~~i~Y~g 801 (806)
++|+||+. .|+|
T Consensus 371 ~~i~RP~~---~Y~G 382 (382)
T cd06107 371 QRIWRPRQ---VYTG 382 (382)
T ss_pred CceeCccc---ccCC
Confidence 69999995 5876
No 26
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-49 Score=413.29 Aligned_cols=283 Identities=34% Similarity=0.558 Sum_probs=260.5
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCee
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dla 273 (806)
++++||++|+|++++. .+.|++||+ ++.|.+.|-... .++ ++|+|.+++||+.++ +.+
T Consensus 5 ~~k~tkvivqGitg~~gtfh~~~~l~yGt-------~~V~GvtPgkgG---------~~~~g~PVf~tV~EA~~~~-~a~ 67 (293)
T COG0074 5 LNKDTKVIVQGITGKQGTFHTEQMLAYGT-------KIVGGVTPGKGG---------QTILGLPVFNTVEEAVKET-GAN 67 (293)
T ss_pred ecCCCeEEEeccccccchHHHHHHHHhCC-------ceeecccCCCCc---------eEEcCccHHHHHHHHHHhh-CCC
Confidence 7899999999999885 678999985 466777666644 455 699999999998887 566
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccccc
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNIL 353 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~ 353 (806)
+.+||++|+++.++++|++. +|++.++|||+|+|..++.++.+++++.|+|++||||.|++.|++++|| ++
T Consensus 68 ~svI~Vp~~~aadai~EAid-a~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiG--------im 138 (293)
T COG0074 68 ASVIFVPPPFAADAILEAID-AGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIG--------IM 138 (293)
T ss_pred EEEEecCcHHHHHHHHHHHh-CCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCCCCccCcCCcceee--------ec
Confidence 66669999999999999998 8999999999999999999999999999999999999999999999998 77
Q ss_pred ccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHH
Q psy16953 354 HSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEV 433 (806)
Q Consensus 354 ~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f 433 (806)
|.+.++||+|++||+||++++++...+++.|+|+|.+|++|+|++.+++|.|+|+.|++||+|++|++.+||||..|++-
T Consensus 139 p~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~A 218 (293)
T COG0074 139 PGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEA 218 (293)
T ss_pred hhhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhh
Q psy16953 434 CAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L 510 (806)
++++++-..+||||+|.+|++++ ..+.++|+||+......|+..|.++|+.+|+.+++++.++.+.++.++..+
T Consensus 219 A~~i~~~~~~KPVVa~iaG~tap---~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 219 AEYIKANATRKPVVAYIAGRTAP---EGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred HHHHHHhccCCCEEEEEeccCCC---ccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 88888833449999999999997 899999999999999999999999999999999999999999998887654
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=8.8e-51 Score=448.28 Aligned_cols=212 Identities=21% Similarity=0.252 Sum_probs=193.7
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||++||++|++|..|++.++++||++|||+||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.+
T Consensus 144 ~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St-~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~ 222 (362)
T cd06111 144 DSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNAST-FTARVITSTLSDIYSAITGAIGALKGPLHGGANEAV 222 (362)
T ss_pred CCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhH-HHHHHHHccCCCHHHHHHHHHhhccCccccchHHHH
Confidence 4578999999999999999999999999999999999999999 899999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCC
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKP 725 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~ 725 (806)
++||+++. +.++++++|++.+++|++|||||||+|+. .|||+++|+++++++. ..+++++++.++++++.+. +
T Consensus 223 ~~~l~ei~-~~~~~~~~v~~~~~~~~~l~GFGH~vyk~--~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~-~ 298 (362)
T cd06111 223 MHMMLEID-DPEKAAQWMLDALARKEKVMGFGHRVYKS--GDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVAA-K 298 (362)
T ss_pred HHHHHHhC-ChhhHHHHHHHHHhcCCceecCCCCCCCC--CCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHh-c
Confidence 99999986 46789999999999999999999999974 5999999999988773 3568999999999988664 4
Q ss_pred CccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 726 NLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 726 ~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
+++||||||+|+++++||+|. ++++++|++||++||+||++||++. ++++||+. .|+||..
T Consensus 299 ~l~pNvD~~~a~l~~~lG~p~--------------~~~~~lf~~~R~~Gw~AH~~Eq~~~-~~l~Rp~~---~Y~G~~~ 359 (362)
T cd06111 299 GIKPNLDFPAGPAYYLMGFDI--------------DFFTPIFVMARITGWTAHIMEQRAD-NALIRPLS---EYNGPEQ 359 (362)
T ss_pred CCCCChHHHHHHHHHHcCcCh--------------hhhhhHHHHHHHHHHHHHHHHHHHc-CCcccCCc---eeeCCCC
Confidence 899999999999999998544 4557899999999999999999986 69999984 6999975
No 28
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=7.7e-51 Score=453.57 Aligned_cols=260 Identities=22% Similarity=0.241 Sum_probs=215.6
Q ss_pred HHHHHHHhhhhCCccccCCCCCCCCCcccchH--------------Hhhcccccccccceeccccccc------------
Q psy16953 502 IIGSVYKDLVSRGDIVPQPELPPPTVPMDYSW--------------ARELGLIRKPASFMTSICDERG------------ 555 (806)
Q Consensus 502 ~~~all~~L~~~g~i~~~~~~P~~~~PMd~~~--------------a~~~g~~r~~~~~~t~i~d~~~------------ 555 (806)
.+..+++.+ |+++|||+... +|..| +.+..+|...+++...
T Consensus 121 ~v~~~i~~~------------p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~-~~~~~~~~~~~e~~~~LiAk~P~i~A~~ 187 (427)
T TIGR01793 121 HVYKTIDAL------------PVTLHPMAQFATAVMALQVESEFAKAYAKG-IHKTKYWEYTYEDSMDLIAKLPTVAAYI 187 (427)
T ss_pred HHHHHHHhC------------CCCCCHHHHHHHHHHhcccccchhhhcccC-ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777 99999999533 23334 4455566655555421
Q ss_pred ccccc-CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHh
Q psy16953 556 QELLY-AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSG 633 (806)
Q Consensus 556 ~~i~~-~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaag 633 (806)
.+..+ .|.++. .++++||++||++||++ |++...++||++|||||||| +|+|| ||+|+++||++|+|+|++||
T Consensus 188 yr~~~~~g~~i~--p~~~l~~a~Nfl~Ml~~--~~~~~~~~l~~~LiLhADHeg~NaST-faarvvaSt~ad~y~~v~Ag 262 (427)
T TIGR01793 188 YRNMYKDGQSIS--IDDSKDYSANFAHMLGY--DSPSFQELMRLYLTIHSDHEGGNVSA-HTGHLVGSALSDPYLSFAAA 262 (427)
T ss_pred HHHHhcCCCccC--CCCCccHHHHHHHHhcC--CCHHHHHHHHHHHhhhcccccccchh-HHHHHhhccCCCHHHHHHHH
Confidence 11112 455532 36789999999999975 78889999999999999999 89999 99999999999999999999
Q ss_pred hccc-ccccCChHHHHHHHHHHHhc------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCC
Q psy16953 634 LLTI-GDRFGGALNDAAIQFSAAYD------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPT 706 (806)
Q Consensus 634 l~al-G~~hGGA~~~a~~~l~e~~~------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~ 706 (806)
+++| ||+||||+++|++||+++.+ +.+++++||++.+++|++|||||||||+. .|||+.+|++++++....
T Consensus 263 i~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr~--~DPRa~~l~~~~~~~~~~ 340 (427)
T TIGR01793 263 LNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLRK--TDPRYICQREFALKHLPD 340 (427)
T ss_pred HhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--CCCCcHHHHHHHHHHcCC
Confidence 9999 99999999999999999853 44678899999999999999999999974 699999999999998888
Q ss_pred ChHHHHHHHHHHHHh----c--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHH
Q psy16953 707 TPLLNYALEVEKITT----S--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYM 780 (806)
Q Consensus 707 ~~~~~~a~~ve~~~~----~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~ 780 (806)
+++++++.++++++. + +.++++||||||+|++++.||+|. .++++++|++||++||+||++
T Consensus 341 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~-------------~~~~t~lFavsR~~Gw~AH~i 407 (427)
T TIGR01793 341 DPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTE-------------ARYYTVLFGVSRALGILSQLI 407 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCc-------------hhhhhhHhhhhccchHHHHHH
Confidence 999999999998652 1 346899999999999999998542 245678999999999999999
Q ss_pred HHhhcCCCcccCCC
Q psy16953 781 DQKRLKQGLYRHPW 794 (806)
Q Consensus 781 Eq~~~~~~i~Rp~~ 794 (806)
||+..+.+|+||++
T Consensus 408 eq~~~~~~I~RP~s 421 (427)
T TIGR01793 408 WDRALGLPLERPKS 421 (427)
T ss_pred HHHHcCCCccCCcc
Confidence 99988889999985
No 29
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=2.7e-50 Score=450.36 Aligned_cols=220 Identities=23% Similarity=0.328 Sum_probs=192.3
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
.|.+... .++++||++||++|++|. +|++..+++||++||||||||+|+|| |++|+++||++|+|+|++||++
T Consensus 183 ~g~~~~~-p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~~n~ST-fa~RvvaSt~adlysav~agi~ 260 (419)
T PRK05614 183 IGQPFVY-PRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHEQNAST-STVRLAGSSGANPFACIAAGIA 260 (419)
T ss_pred CCCCCCC-CCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCCCCcch-HHHhhhhccCCCHHHHHHHHHh
Confidence 4555432 245789999999999986 56778899999999999999999999 9999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHh--cCCcccccCCCCCCCCCCChHHHHHHHHHHHh----CCCCh
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRK--KGKLIMGIGHRVKSINNPDMRVKIIKEFVLQN----FPTTP 708 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~--~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~----~~~~~ 708 (806)
++ ||+||||++.|++||+++. +.+++++|+++.++ +|++|||||||+|+. .|||+++|+++++++ ...++
T Consensus 261 aL~GplHGGA~e~v~~~l~~i~-~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~--~DPRa~~l~~~a~~l~~~~~~~~~ 337 (419)
T PRK05614 261 ALWGPAHGGANEAVLKMLEEIG-SVDNIPEFIARAKDKNDGFRLMGFGHRVYKN--YDPRAKIMRETCHEVLKELGLNDP 337 (419)
T ss_pred hcCCCcccChHHHHHHHHHHhC-CchhHHHHHHHHHhccCCccccCCCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCcH
Confidence 99 9999999999999999995 56899999999976 456999999999974 699999999999865 23789
Q ss_pred HHHHHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhh
Q psy16953 709 LLNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKR 784 (806)
Q Consensus 709 ~~~~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~ 784 (806)
++++++++|+++.++ +++++||||||+|+++.+||+|.+ +++++|++||++||+|||+||++
T Consensus 338 ~~~ia~~ie~~~~~~~~~~~r~l~pNvD~~s~~l~~~lG~p~~--------------~~t~lFa~~R~~Gw~AH~~Eq~~ 403 (419)
T PRK05614 338 LLEVAMELEEIALNDEYFIERKLYPNVDFYSGIILKALGIPTS--------------MFTVIFALARTVGWIAHWNEMHS 403 (419)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcChHHHHHHHHHHcCcChh--------------hhcchHHhHhHHHHHHHHHHHHh
Confidence 999999999975442 478999999999999999985544 45689999999999999999998
Q ss_pred c-CCCcccCCCCcceecCC
Q psy16953 785 L-KQGLYRHPWDDISYVLP 802 (806)
Q Consensus 785 ~-~~~i~Rp~~~~i~Y~gp 802 (806)
. +++++||+. .|+|.
T Consensus 404 ~~~~~iiRPr~---~Y~G~ 419 (419)
T PRK05614 404 DPEQKIGRPRQ---LYTGY 419 (419)
T ss_pred ccCCcccCCCc---cccCC
Confidence 6 468999995 58884
No 30
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=2.3e-50 Score=453.68 Aligned_cols=214 Identities=21% Similarity=0.294 Sum_probs=189.6
Q ss_pred ccCCCCHHHHHHHHHhcC-CCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChH
Q psy16953 569 LKQNMGIGGVLSLLWFQR-QLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645 (806)
Q Consensus 569 i~~~~s~~~~~~~ll~g~-~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~ 645 (806)
.++++||++||++|++|+ +|++.++++||++|||||||| +|+|| ||+|+++||++|+|+|++||++++ ||+||||+
T Consensus 200 p~~~ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naST-faaRv~aSt~ad~ysavaagi~aL~GplHGGA~ 278 (447)
T PRK14032 200 PKPELSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGAN 278 (447)
T ss_pred CCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhH-HHHHHHHccCCcHHHHHHHHHHhccCccccCHH
Confidence 356899999999999998 888999999999999999999 79999 999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHh-----cCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHH
Q psy16953 646 NDAAIQFSAAYD------AGLIPMEFVNEMRK-----KGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLN 711 (806)
Q Consensus 646 ~~a~~~l~e~~~------~~~~~~~~v~~~~~-----~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~ 711 (806)
++|++||+++.+ +.+++++|+++.++ ++++|||||||+|+. .|||+++|+++++++. +..++++
T Consensus 279 e~v~~~l~ei~~~~~~~~s~~~v~~~v~~~l~~~~~~~~~ri~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~g~~~~~~ 356 (447)
T PRK14032 279 IKVMEMFEDIKENVKDWEDEDEIADYLTKILNKEAFDKSGLIYGMGHAVYTI--SDPRAVILKKFAEKLAKEKGREEEFN 356 (447)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCCcccCCCCCCCCC--CCccHHHHHHHHHHHHHHcCCchHHH
Confidence 999999999963 34567889998886 568999999999974 5999999999999884 3466788
Q ss_pred HHHHHHHHHhc-------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhh
Q psy16953 712 YALEVEKITTS-------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKR 784 (806)
Q Consensus 712 ~a~~ve~~~~~-------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~ 784 (806)
++.++|+++.+ +.++++||||||+|+++++||+|.+ +++++|++||++||+||++||+.
T Consensus 357 ~~~~~e~~~~~~~~~~~~~~k~l~pNVDfysa~i~~~lGip~~--------------~~t~lFaisR~~Gw~AH~~Eq~~ 422 (447)
T PRK14032 357 LYEKIEKLAPELIAEERGIYKGVSANVDFYSGFVYDMLGIPEE--------------LYTPLFAIARIVGWSAHRIEELV 422 (447)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcChhhHHHHHHHHcCCChh--------------hhhhhHHHHhHHHHHHHHHHHHh
Confidence 88888876532 2468999999999999999985444 45689999999999999999996
Q ss_pred cCCCcccCCCCcceecCC
Q psy16953 785 LKQGLYRHPWDDISYVLP 802 (806)
Q Consensus 785 ~~~~i~Rp~~~~i~Y~gp 802 (806)
.+++++||+. .|+||
T Consensus 423 ~~~~i~RP~~---~YvG~ 437 (447)
T PRK14032 423 NGGKIIRPAY---KSVLE 437 (447)
T ss_pred cCCceecccc---eeeCC
Confidence 6689999994 69999
No 31
>PLN02456 citrate synthase
Probab=100.00 E-value=2.7e-50 Score=453.43 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=195.5
Q ss_pred CCCccccccCCCCHHHHHHHHHhc-----CCCChHHHHHHHHHhhhccCCCCCCcccceeeeee-ccCCChHHHHHHhhc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQ-----RQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCA-RAGKDLVSSLVSGLL 635 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g-----~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~a-Sa~adl~~avaagl~ 635 (806)
|.+... .++++||++||++|+++ .+|++..+++||++||||||||+|+|| |++|+++ ||++|+|+|++||++
T Consensus 210 g~~~~~-P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiLhADHe~n~ST-~aar~~a~St~ad~ysavaAgi~ 287 (455)
T PLN02456 210 GRGPVI-PDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFIIHADHEGGCST-AAARHLVGSSGVDPYTSVAAGVN 287 (455)
T ss_pred CCCCCC-CCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHeeeccCCCCchh-HHHHHHHhccCCCHHHHHHHHhh
Confidence 555432 35689999999999998 468889999999999999999999999 8888877 999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHh---CCCChHHH
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQN---FPTTPLLN 711 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~---~~~~~~~~ 711 (806)
+| ||+||||+++|++||+++. +.+++++||++.+++|++|||||||||+ +.|||+++|+++++++ ...+|+++
T Consensus 288 aL~GPlHGGA~e~v~~~l~ei~-~~~~v~~~v~~~l~~~~~l~GFGHrvyk--~~DPRa~~L~~~a~~l~~~~~~~~~~~ 364 (455)
T PLN02456 288 ALAGPLHGGANEAVLKMLKEIG-TVENIPEYVEGVKNSKKVLPGFGHRVYK--NYDPRAKCIREFALEVFKHVGDDPLFK 364 (455)
T ss_pred hcCCCcccChHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCcccCCCCCCCC--CCCCCHHHHHHHHHHHHHhcCCCHHHH
Confidence 99 9999999999999999995 5678999999999999999999999997 4699999999999976 46789999
Q ss_pred HHHHHHHHHhc----CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcC-
Q psy16953 712 YALEVEKITTS----KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLK- 786 (806)
Q Consensus 712 ~a~~ve~~~~~----~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~- 786 (806)
++.++|+++.. ++++++||||||+|+++..||+|. ++++++|++||++||+|||+||+..+
T Consensus 365 ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~lGip~--------------~~~t~lFaisR~~Gw~AH~~E~~~~~~ 430 (455)
T PLN02456 365 VASALEEVALLDEYFKVRKLYPNVDFYSGVLLRALGFPE--------------EFFTVLFAVSRAAGYLSQWDEALGLPD 430 (455)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHcCcCh--------------hhccchhhhhhHHHHHHHHHHHHhCCc
Confidence 99999997522 357899999999999999998554 45578999999999999999999864
Q ss_pred CCcccCCCCcceecCCCC
Q psy16953 787 QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 787 ~~i~Rp~~~~i~Y~gp~~ 804 (806)
++|+||+. .|+||..
T Consensus 431 ~ri~RP~~---~Y~G~~~ 445 (455)
T PLN02456 431 ERIMRPKQ---VYTGEWL 445 (455)
T ss_pred ccccCCCc---cccCCCc
Confidence 59999994 5999854
No 32
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.4e-50 Score=453.06 Aligned_cols=211 Identities=21% Similarity=0.203 Sum_probs=189.0
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALND 647 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~ 647 (806)
++++||++||++||++. +...++||++|||||||| +|+|| ||+|+++||++|+|+|++||++++ ||+||||+++
T Consensus 201 ~~~ls~a~NFl~Ml~~~---~~~~~~l~~~LiL~ADHe~~naST-faaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~ 276 (437)
T PRK09569 201 DPELDYGANFAHMIGQP---KPYKDVARMYFILHSDHESGNVSA-HTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQE 276 (437)
T ss_pred CCCcCHHHHHHHHhcCC---chHHHHHHHHHhhhhccCCCcchH-HHHHHHhccCCCHHHHHHHHHHhccCCccCCchHH
Confidence 56899999999999874 455899999999999999 79999 999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhc-------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy16953 648 AAIQFSAAYD-------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKIT 720 (806)
Q Consensus 648 a~~~l~e~~~-------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~ 720 (806)
|++||+++.+ +.++++++|++.++++++|||||||+|+. .|||+.+|+++++++...+++++++.++|+++
T Consensus 277 v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvyk~--~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~ 354 (437)
T PRK09569 277 VLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVLRK--TDPRYTAQREFCLKHLPDDPLFKLVAMIFEVA 354 (437)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCCCC--CCCchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999998863 34688899999999999999999999974 59999999999999988899999999999865
Q ss_pred hc------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCC
Q psy16953 721 TS------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794 (806)
Q Consensus 721 ~~------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~ 794 (806)
.+ +.++++||||||+|+++++||+|. .++++++|++||++||+||++||+..+++++||+.
T Consensus 355 ~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~-------------~~~~t~lFaisR~~Gw~AH~iEq~~~~~~i~RP~~ 421 (437)
T PRK09569 355 PGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKE-------------WDFYTVLFGVGRALGVMANITWDRGLGYAIERPKS 421 (437)
T ss_pred HHHHHHhcccCCCCCChHHHHHHHHHHcCCCc-------------hhhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCcc
Confidence 32 246899999999999999998542 24557899999999999999999987779999994
Q ss_pred CcceecCC
Q psy16953 795 DDISYVLP 802 (806)
Q Consensus 795 ~~i~Y~gp 802 (806)
.|+||
T Consensus 422 ---~Y~G~ 426 (437)
T PRK09569 422 ---VTTEM 426 (437)
T ss_pred ---ccchH
Confidence 69987
No 33
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=3e-50 Score=449.48 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=185.7
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALND 647 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~ 647 (806)
++++||++||++|+ |..|++...++||++|||||||| +|+|| ||+|+++||++|+|+|++||++++ ||+||||+++
T Consensus 199 ~~~ls~a~NFL~Ml-g~~p~~~~~~~l~~~LiL~ADHeg~NaST-faarvvaST~ad~ysav~agi~aL~GPlHGGAne~ 276 (428)
T cd06106 199 DPEVDWSYNFTSML-GYGDNLDFVDLLRLYIALHGDHEGGNVSA-HTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQE 276 (428)
T ss_pred CCCcCHHHHHHHHh-CCCCChHHHHHHHHHHhhhcccCCccchH-HHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHH
Confidence 56899999999999 77788899999999999999999 89999 999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhc------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Q psy16953 648 AAIQFSAAYD------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF--PTTPLLNYALEVEKI 719 (806)
Q Consensus 648 a~~~l~e~~~------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~--~~~~~~~~a~~ve~~ 719 (806)
|++||+++.+ +.+++++||++.+++|++|||||||||+. .|||+++|+++++++. ..+++++++.++|++
T Consensus 277 v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk~--~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~ 354 (428)
T cd06106 277 VLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLRK--PDPRFTALMEFAQTRPELENDPVVQLVQKLSEI 354 (428)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9998877632 24688999999999999999999999975 5999999999999884 357999999999986
Q ss_pred Hhc------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCC
Q psy16953 720 TTS------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHP 793 (806)
Q Consensus 720 ~~~------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~ 793 (806)
+.+ +.++++||||||+|+++..||+|.+ .+++++|++||++||+||++||+..+.+|+||+
T Consensus 355 ~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~-------------~~ft~lFaisR~~GW~AHi~eq~~~~~~I~RP~ 421 (428)
T cd06106 355 APGVLTEHGKTKNPFPNVDAASGVLFYHYGIREF-------------LYYTVIFGVSRALGPLTQLVWDRILGLPIERPK 421 (428)
T ss_pred HHHHHHHhccccCCCCCchhHHHHHHHHcCCChh-------------hcchHHHHHHHHHHHHHHHHHHHhCCCCCcCCC
Confidence 532 2468999999999999999985542 345689999999999999999997778999998
Q ss_pred C
Q psy16953 794 W 794 (806)
Q Consensus 794 ~ 794 (806)
.
T Consensus 422 s 422 (428)
T cd06106 422 S 422 (428)
T ss_pred c
Confidence 5
No 34
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=2.5e-50 Score=445.70 Aligned_cols=214 Identities=21% Similarity=0.227 Sum_probs=192.9
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
+++++|++||++|++|.+|++.++++||++|||+||||+|+|| ||+|+++||++|+|+|++|||+++ ||+||||++.|
T Consensus 150 ~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaSt-fa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~ 228 (369)
T PRK12349 150 LKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNST-FTARVIASTQSDLYGALTGAVASLKGSLHGGANEAV 228 (369)
T ss_pred CcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHH-HHHHHHHccCccHHHHHHHHHHhccCccccChHHHH
Confidence 4578999999999999999999999999999999999999999 999999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCC
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKP 725 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~ 725 (806)
++||+++. +.++++++|++.+++|++|||||||+|+. +.|||+++|++.++++. +..+++++++++|+++.+. +
T Consensus 229 ~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GFGH~vy~~-~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~-~ 305 (369)
T PRK12349 229 MYMLLEAG-TVEKFEELLQKKLYNKEKIMGFGHRVYMK-KMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEKE-K 305 (369)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCcccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh-c
Confidence 99999985 46789999999999999999999999942 35999999999988774 3457888998999888654 4
Q ss_pred CccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCCC
Q psy16953 726 NLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQY 805 (806)
Q Consensus 726 ~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~~ 805 (806)
+++||||||+|+++++||+|. ++++++|++||++||+||++||++. +.++||+ ..|+||...
T Consensus 306 gl~pNvD~~~a~l~~~lG~p~--------------~~~~~lf~i~R~~Gw~AH~~Eq~~~-~~l~RP~---~~Y~G~~~~ 367 (369)
T PRK12349 306 GLYPNLDYYAAPVYWMLGIPI--------------QLYTPIFFSSRTVGLCAHVIEQHAN-NRLFRPR---VNYIGERHV 367 (369)
T ss_pred CCCCCcHHHHHHHHHHcCCCh--------------hhhhHHHHHHHHHHHHHHHHHHHhc-CCCcccc---ceeeCCCcC
Confidence 899999999999999998544 4557899999999999999999986 7999998 469999753
No 35
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=3e-50 Score=449.34 Aligned_cols=215 Identities=22% Similarity=0.275 Sum_probs=189.8
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-c
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-G 638 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G 638 (806)
+|.+... .++++||++||++||++. ++...++||++|||||||| +|+|| ||+|+++||++|+|+|++||+++| |
T Consensus 190 ~g~~~~~-pd~~ls~a~Nfl~Ml~~~--~~~~~~~l~~~lvLhADHeg~NaST-faarvvaSt~ad~ysav~agi~aL~G 265 (427)
T cd06105 190 RGGKIIA-IDSNLDWSANFANMLGYT--DPQFTELMRLYLTIHSDHEGGNVSA-HTTHLVGSALSDPYLSFAAAMNGLAG 265 (427)
T ss_pred CCCCcCC-CCCCcCHHHHHHHHhcCC--CHHHHHHHHHHHhhhccccCccchH-HHHHHHhccCCCHHHHHHHHHhhcCC
Confidence 4655432 256899999999999864 3778999999999999999 89999 999999999999999999999999 9
Q ss_pred cccCChHHHHHHHHHHHhc------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHH
Q psy16953 639 DRFGGALNDAAIQFSAAYD------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNY 712 (806)
Q Consensus 639 ~~hGGA~~~a~~~l~e~~~------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~ 712 (806)
|+||||+++|++||.++.+ +.+++++||++.+++|++|||||||+|+. .|||+.+|+++++++.+.++++++
T Consensus 266 plHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~--~DPRa~~lk~~~~~~~~~~~~~~~ 343 (427)
T cd06105 266 PLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRK--TDPRYTCQREFALKHLPNDPLFKL 343 (427)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--CCCCcHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999988753 34577899999999999999999999975 599999999999999888999999
Q ss_pred HHHHHHHHhc------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcC
Q psy16953 713 ALEVEKITTS------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLK 786 (806)
Q Consensus 713 a~~ve~~~~~------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~ 786 (806)
+.++|+++.+ +.++++||||||+|++++.||+|. .++++++|++||++||+||++||+..+
T Consensus 344 ~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~-------------~~~ft~lFa~sR~~GW~AH~~Eq~~~~ 410 (427)
T cd06105 344 VSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTE-------------MNYYTVLFGVSRALGVLSQLIWDRALG 410 (427)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCc-------------hhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999986532 246999999999999999998652 234568999999999999999999888
Q ss_pred CCcccCCC
Q psy16953 787 QGLYRHPW 794 (806)
Q Consensus 787 ~~i~Rp~~ 794 (806)
++|+||+.
T Consensus 411 ~~I~RP~s 418 (427)
T cd06105 411 LPLERPKS 418 (427)
T ss_pred CCccCCcc
Confidence 89999985
No 36
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=4.5e-50 Score=447.07 Aligned_cols=218 Identities=24% Similarity=0.309 Sum_probs=192.2
Q ss_pred CCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhcc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 636 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~a 636 (806)
|.++.. .++++||++||++|++|+ +|++...++||++||||||||+|+|| ||+|+++||++|+|+|++|||++
T Consensus 166 g~~~~~-p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~~n~ST-faaRv~aSt~adl~sav~agl~a 243 (400)
T cd06114 166 GQPFIY-PDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHEQNAST-STVRMVGSSGANLFASISAGIAA 243 (400)
T ss_pred CCCCCC-CCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCCCcchH-HHHHHHhccCCcHHHHHHHHHHh
Confidence 554432 256799999999999988 78889999999999999999999999 99999999999999999999999
Q ss_pred c-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcC--CcccccCCCCCCCCCCChHHHHHHHHHHHh----CCCChH
Q psy16953 637 I-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKG--KLIMGIGHRVKSINNPDMRVKIIKEFVLQN----FPTTPL 709 (806)
Q Consensus 637 l-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~--~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~----~~~~~~ 709 (806)
+ ||+||||++.|++||.++. +.++++++|++.++++ ++|||||||+|+. .|||+++|+++++++ ...+++
T Consensus 244 l~GplHGGA~~~v~~~l~~i~-~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~--~DPRa~~L~~~~~~l~~~~~~~~~~ 320 (400)
T cd06114 244 LWGPLHGGANEAVLEMLEEIG-SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKN--YDPRAKILKKTCDEVLAELGKDDPL 320 (400)
T ss_pred ccCCcccChHHHHHHHHHHhc-CcccHHHHHHHHHhcCCCccccCCCCCCCCC--CCccHHHHHHHHHHHHHHhCCCcHH
Confidence 9 9999999999999999996 4579999999999987 5999999999974 599999999998875 245789
Q ss_pred HHHHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhc
Q psy16953 710 LNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRL 785 (806)
Q Consensus 710 ~~~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~ 785 (806)
+++++++|+++.++ +++++||||||+|+++++||+|. ++++++|++||++||+||++||++.
T Consensus 321 ~~~~~~ie~~~~~~~~~~~~~l~pNvD~~~a~l~~~lG~p~--------------~~~~~lFa~sR~~Gw~AH~~Eq~~~ 386 (400)
T cd06114 321 LEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRALGIPT--------------EMFTVLFALGRTPGWIAQWREMHED 386 (400)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHcCCCh--------------HhhhhhHHHHhHHHHHHHHHHHHhC
Confidence 99999999965432 47899999999999999998544 4557899999999999999999987
Q ss_pred C-CCcccCCCCcceecC
Q psy16953 786 K-QGLYRHPWDDISYVL 801 (806)
Q Consensus 786 ~-~~i~Rp~~~~i~Y~g 801 (806)
+ ++++||+. .|+|
T Consensus 387 ~~~~liRP~~---~YvG 400 (400)
T cd06114 387 PELKIGRPRQ---LYTG 400 (400)
T ss_pred CCCceeCccc---ccCC
Confidence 3 58999985 5876
No 37
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=7.8e-50 Score=411.97 Aligned_cols=205 Identities=21% Similarity=0.318 Sum_probs=187.2
Q ss_pred CHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHH
Q psy16953 574 GIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQF 652 (806)
Q Consensus 574 s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l 652 (806)
||++||++|++|++|++.++++||++||+++|||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.+++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St-~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHEGNAST-FTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhh-HHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999999999999999999999999999999998 999999999999999999999999 999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcC--CCC
Q psy16953 653 SAAYDAG-LIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPT---TPLLNYALEVEKITTSK--KPN 726 (806)
Q Consensus 653 ~e~~~~~-~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~---~~~~~~a~~ve~~~~~~--~~~ 726 (806)
+++.+.. +++.++|++.++++++|||||||+|+ ++|||+++|+++++++... ++++++++++|+++.+. .++
T Consensus 80 ~e~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~--~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~r~ 157 (213)
T cd06099 80 EEIGTPKNEPAEAYIRKKLESKRVIMGFGHRVYK--KYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYEKK 157 (213)
T ss_pred HHhCCcccccHHHHHHHHHhCCCcccCCCCCCCC--CCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9996421 68899999999999999999999996 4699999999999998644 49999999999988664 358
Q ss_pred ccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCC
Q psy16953 727 LILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWD 795 (806)
Q Consensus 727 l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~ 795 (806)
++||||||+|+++++||+|. ++++++|+++|++||+||++||+.++.+++||+..
T Consensus 158 l~~Nvd~~~a~l~~~lG~p~--------------~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~ 212 (213)
T cd06099 158 LYPNVDFYSGVLYKAMGFPT--------------ELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSE 212 (213)
T ss_pred CCCChHHHHHHHHHHcCcCH--------------HhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCccc
Confidence 99999999999999998544 45578999999999999999999986699999854
No 38
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=5.3e-50 Score=443.55 Aligned_cols=212 Identities=22% Similarity=0.270 Sum_probs=193.8
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||++||++|++|.+|++.++++||++|||+||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||++.|
T Consensus 154 ~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~St-faaRv~aSt~adl~~av~agl~al~GplHGGA~e~~ 232 (375)
T PRK14033 154 RSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNAST-FTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAV 232 (375)
T ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHH-HHHHHHhccCCCHHHHHHHHHhhccCccccChHHHH
Confidence 4578999999999999999999999999999999999999999 899999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCC
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKP 725 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~ 725 (806)
++||+++. +.++++++|++.+++|++|||||||+|+. .|||+++|++.++++. ..+++++++.++|+++.+. +
T Consensus 233 ~~~l~ei~-~~~~~~~~v~~~~~~~~~l~GFGH~vyk~--~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~-~ 308 (375)
T PRK14033 233 MHTMLEIG-DPARAAEWLRDALARKEKVMGFGHRVYKH--GDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAEA-T 308 (375)
T ss_pred HHHHHHhC-ChhHHHHHHHHHHhCCCceecCCCCCCCC--CCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-h
Confidence 99999986 46789999999999999999999999974 5999999999988874 4578999999999988664 5
Q ss_pred CccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 726 NLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 726 ~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
+++||||||+|+++++||+|. ++++++|++||++||+||++||+++ ++++||+. .|+||..
T Consensus 309 gl~pNvD~~~a~l~~~lGip~--------------~~~~~lf~~~R~~Gw~AH~~Eq~~~-~~l~RP~~---~YvG~~~ 369 (375)
T PRK14033 309 GIKPNLDFPAGPAYYLMGFDI--------------DFFTPIFVMSRITGWTAHIMEQRAS-NALIRPLS---EYNGPEQ 369 (375)
T ss_pred CCCCCcHHHHHHHHHHcCcCc--------------hhhhHHHHHHHHHHHHHHHHHHHhc-CCccccCc---eecCCCC
Confidence 899999999999999998544 4557899999999999999999986 69999985 6999864
No 39
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=6.7e-50 Score=442.85 Aligned_cols=219 Identities=21% Similarity=0.265 Sum_probs=196.5
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDR 640 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~ 640 (806)
|.+.... .++++|++||++|++|.+|++..+++||++|||+||||+|+|| |++|+++||++|+|+|++|||+++ ||+
T Consensus 137 g~~~~~p-~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St-~aaRv~aSt~adl~~av~agl~al~Gp~ 214 (368)
T TIGR01800 137 GLEIVAP-KEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNAST-FAARVAASTLSDMYSAITAAIGALKGPL 214 (368)
T ss_pred CCCCcCC-CCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHH-HHHHHHhccCCCHHHHHHHHHhhcCCcc
Confidence 4444322 3468999999999999999999999999999999999999999 899999999999999999999999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHH
Q psy16953 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVE 717 (806)
Q Consensus 641 hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve 717 (806)
||||++.|++||.++. +.++++++|++.+++|++|||||||+|+. .|||+++|+++++++. ..+++++++.++|
T Consensus 215 HGGA~~~~~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GfGH~vy~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~ 291 (368)
T TIGR01800 215 HGGANEAVMAMLDEIG-DPDKAEAWIRKALENKERIMGFGHRVYKT--YDPRAKILKEYAKKLSAKEGDSKWYEIAERLE 291 (368)
T ss_pred ccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHCCCccCCCCCCCCCC--CCchHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 9999999999999986 45789999999999999999999999974 6999999999999974 5688999999999
Q ss_pred HHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcc
Q psy16953 718 KITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDI 797 (806)
Q Consensus 718 ~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i 797 (806)
+++.+. ++++||||||+|+++++||+| .++++++|++||++||+||++||++. ++++||+ .
T Consensus 292 ~~~~~~-~~l~pNvD~~~a~l~~~lg~p--------------~~~~~~lf~~~R~~Gw~AH~~Eq~~~-~~l~Rp~---~ 352 (368)
T TIGR01800 292 DVMEKE-KGIYPNVDFYSGSVYYSMGIP--------------TDLFTPIFAMSRVSGWTAHIIEQVEN-NRLIRPR---A 352 (368)
T ss_pred HHHHHh-cCCCCChHHHHHHHHHHcCcC--------------HHHhhhHHHHHHHHHHHHHHHHHHhc-CCccCcc---c
Confidence 988764 589999999999999999843 45567999999999999999999975 7899998 4
Q ss_pred eecCCCC
Q psy16953 798 SYVLPEQ 804 (806)
Q Consensus 798 ~Y~gp~~ 804 (806)
.|+||..
T Consensus 353 ~Y~G~~~ 359 (368)
T TIGR01800 353 DYVGPEE 359 (368)
T ss_pred cccCCCC
Confidence 6999864
No 40
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.7e-49 Score=443.73 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=189.3
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
|.+... .++++||++||++||.+. ++..+++||++|||||||| +|+|| ||+|+++||++|+|+|++||++++ ||
T Consensus 193 g~~~~~-p~~~ls~aeNfl~ml~~~--~~~~~~~l~~~LiL~ADHe~~NaST-faaRvvaSt~ad~ysav~agi~aL~Gp 268 (426)
T cd06103 193 GGEIGA-IDSKLDWSANFAHMLGYE--DEEFTDLMRLYLTLHSDHEGGNVSA-HTSHLVGSALSDPYLSFSAALNGLAGP 268 (426)
T ss_pred CCCccC-CCCCcCHHHHHHHHhCCC--CHHHHHHHHHHHhhhhccCCccchH-HHHHHHhccCCCHHHHHHHHHhhcCCC
Confidence 655433 256899999999999543 3678899999999999999 79999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhc------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYD------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYA 713 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a 713 (806)
+||||++.|++||+++.+ +.++++++|++++++|++|||||||+|+. .|||+++|+++++++...+++++++
T Consensus 269 lHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk~--~DPRa~~L~~~~~~~~~~~~~~~~a 346 (426)
T cd06103 269 LHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLRK--TDPRFTCQREFALKHLPDDPLFKLV 346 (426)
T ss_pred cccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCCC--CCCchHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999998752 35688999999999999999999999975 5999999999999998889999999
Q ss_pred HHHHHHHhc------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCC
Q psy16953 714 LEVEKITTS------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQ 787 (806)
Q Consensus 714 ~~ve~~~~~------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~ 787 (806)
.++|+++.+ +.++++||||||+|++++.||+|. .++++++|++||++||+||++||++.+.
T Consensus 347 ~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~-------------~~~ft~lFa~sR~~Gw~AH~~Eq~~~~~ 413 (426)
T cd06103 347 AQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTE-------------PQYYTVLFGVSRALGVLAQLVWSRALGL 413 (426)
T ss_pred HHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCCh-------------hhhhhHHHhHhhcchHHHHHHHHHhCCC
Confidence 999986642 246899999999999999998542 2355789999999999999999998888
Q ss_pred CcccCCCC
Q psy16953 788 GLYRHPWD 795 (806)
Q Consensus 788 ~i~Rp~~~ 795 (806)
+|+||+.-
T Consensus 414 ~i~RP~s~ 421 (426)
T cd06103 414 PIERPKSM 421 (426)
T ss_pred CCCCCCcc
Confidence 89999853
No 41
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=1.1e-48 Score=432.12 Aligned_cols=209 Identities=20% Similarity=0.208 Sum_probs=192.5
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||+++|++|++|++|++...++||++||++||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.+
T Consensus 144 ~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~St-fa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~ 222 (356)
T cd06110 144 DPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHELNAST-FAARVVASTLSDMYSAVTAAIGALKGPLHGGANERV 222 (356)
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhH-HHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHH
Confidence 4578999999999999999999999999999999999999999 899999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCC
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKP 725 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~ 725 (806)
++||+++. +.++++++|+++++++++|||||||+|+. .|||+++|+++++++. +.+++++++.++|+++.+. +
T Consensus 223 ~~~l~~~~-~~~~~~~~v~~~~~~~~~i~GfGH~vy~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~-~ 298 (356)
T cd06110 223 MKMLLEIG-SVDNVAAYVKDKLANKEKIMGFGHRVYKT--GDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRDE-K 298 (356)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHhcCCeecCCCCccCCC--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-c
Confidence 99999985 56789999999999999999999999974 5999999999999984 4679999999999988765 5
Q ss_pred CccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecC
Q psy16953 726 NLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVL 801 (806)
Q Consensus 726 ~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~g 801 (806)
|++||||+|+|+++++||+| .++++++|++||++||+||++||+++ +.++||+. .|+|
T Consensus 299 ~l~pNvd~~~a~l~~~lg~p--------------~~~~~~lf~i~R~~Gw~AH~~Eq~~~-~~iiRP~~---~Y~G 356 (356)
T cd06110 299 GLNPNVDFYSASVYYMLGIP--------------VDLFTPIFAISRVSGWCAHILEQYFN-NRLIRPRA---EYVG 356 (356)
T ss_pred CCCcChHHHHHHHHHHcCcC--------------hhhhhHHHHHHHHHHHHHHHHHHHHc-CCccCCcc---ccCC
Confidence 89999999999999999844 45567899999999999999999986 79999995 5876
No 42
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=8.3e-49 Score=437.69 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=188.3
Q ss_pred cCCCCHHHHHHHHHhc-CCCChHHHHHHHHHhhhccCCC-CCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHH
Q psy16953 570 KQNMGIGGVLSLLWFQ-RQLPPYVCKFLEMSLMVTADHG-PAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALN 646 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g-~~~~~~~~~~l~~~Lvl~ADHg-~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~ 646 (806)
++++||++||++|++| ++|++.++++||++|||||||| +|+|| ||+|+++||++|+|+|++||++++ ||+||||++
T Consensus 171 ~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST-~aaRv~aSt~ad~~~avaagi~al~GplHGGA~e 249 (406)
T cd06113 171 QPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANI 249 (406)
T ss_pred CCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHH
Confidence 5689999999999998 5888899999999999999999 89999 999999999999999999999999 999999999
Q ss_pred HHHHHHHHHhc------CCCCHHHHHHHHHhcC-----CcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHH
Q psy16953 647 DAAIQFSAAYD------AGLIPMEFVNEMRKKG-----KLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNY 712 (806)
Q Consensus 647 ~a~~~l~e~~~------~~~~~~~~v~~~~~~~-----~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~ 712 (806)
+|++||+++.+ +.+++++|+++.++++ ++|||||||+|+. .|||+++|+++++++. ..++++++
T Consensus 250 ~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~ 327 (406)
T cd06113 250 KVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTL--SDPRAVVLKKYARSLAKEKGREEEFAL 327 (406)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCC--CCccHHHHHHHHHHHHHhcCcchHHHH
Confidence 99999999963 3557788999988776 5999999999975 5999999999999884 34679999
Q ss_pred HHHHHHHHh-------cCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhc
Q psy16953 713 ALEVEKITT-------SKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRL 785 (806)
Q Consensus 713 a~~ve~~~~-------~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~ 785 (806)
+.++|+++. .+.++++||||||+|+++++||+|. ++++++|++||++||+||++||+.+
T Consensus 328 ~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~--------------~~~t~lF~isR~~Gw~AH~~Eq~~~ 393 (406)
T cd06113 328 YERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQ--------------ELYTPLFAVARIVGWCAHRIEELLN 393 (406)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCCh--------------hhhhhHHHHHhHHHHHHHHHHHHhc
Confidence 999998652 2346899999999999999998544 4557899999999999999999977
Q ss_pred CCCcccCCCCcceecC
Q psy16953 786 KQGLYRHPWDDISYVL 801 (806)
Q Consensus 786 ~~~i~Rp~~~~i~Y~g 801 (806)
++.++||+. .|+|
T Consensus 394 ~~~l~RP~~---~Y~G 406 (406)
T cd06113 394 SGRIIRPAY---KYVG 406 (406)
T ss_pred CCceecccc---ccCC
Confidence 789999995 5876
No 43
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1e-48 Score=432.81 Aligned_cols=208 Identities=23% Similarity=0.297 Sum_probs=191.4
Q ss_pred cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHH
Q psy16953 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDA 648 (806)
Q Consensus 570 ~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a 648 (806)
++++||++||++|++|++|++.++++||++||++||||+|+|| |++|+++||++|+|+|++||++++ ||+||||++.|
T Consensus 144 ~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~St-fa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~ 222 (358)
T cd06118 144 DPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNAST-FTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAV 222 (358)
T ss_pred CCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHH
Confidence 4578999999999999999999999999999999999999999 999999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhcCC-
Q psy16953 649 AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFP---TTPLLNYALEVEKITTSKK- 724 (806)
Q Consensus 649 ~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ve~~~~~~~- 724 (806)
++||+++. +.+++++++++.+++|++|||||||+|+. .|||+.+|+++++++.. .+++++++.++|+++.+.+
T Consensus 223 ~~~l~~~~-~~~~~~~~i~~~l~~~~~i~GfGH~vyk~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 299 (358)
T cd06118 223 LKMLLEIG-TPENVEAYIWKKLANKRRIMGFGHRVYKT--YDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVLG 299 (358)
T ss_pred HHHHHHhC-CchHHHHHHHHHHhcCCeecCCCCCCCCC--CCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Confidence 99999996 45789999999999999999999999974 69999999999999854 5899999999999886643
Q ss_pred -CCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCC
Q psy16953 725 -PNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWD 795 (806)
Q Consensus 725 -~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~ 795 (806)
++++||||||+|+++++||+|. ++++++|++||++||+||++||+..+.+++||+..
T Consensus 300 ~r~l~pNvd~~~~~l~~~lg~p~--------------~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~ 357 (358)
T cd06118 300 EKGIYPNVDFYSGVVYKALGFPT--------------ELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAE 357 (358)
T ss_pred CCCCCcChHHHHHHHHHHcCcCH--------------HHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCccc
Confidence 5899999999999999998544 45578999999999999999999986699999853
No 44
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=4.9e-48 Score=447.06 Aligned_cols=270 Identities=23% Similarity=0.329 Sum_probs=251.5
Q ss_pred CCCCceEEEEccChhH-------HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQTRA-------VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~-------~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~ 270 (806)
|.|+ +|+|+|.+.+. ++||+++| +|+||||||++ +++ |++||+|++| +|+.+
T Consensus 8 ~~p~-svavigas~~~~~vg~~i~~nL~~~g----------~g~i~PVnp~~--------~~v~G~~ay~s~~~-lp~~~ 67 (598)
T COG1042 8 FAPK-SIAVIGASERPGKLGYEILRNLLEYG----------QGKIYPVNPKY--------DEVLGVKAYTSVAD-LPDAP 67 (598)
T ss_pred hCCc-eEEEeeccCCcchhHHHHHHHHHhcC----------CCceEecCccc--------cccccccccchHhh-CCCCC
Confidence 5555 78999998773 78999887 89999999996 456 6999999999 99999
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH------HHHHHHHHHHHHcCCeEEccCccccccCCcccccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE------NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGN 344 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E------~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~ 344 (806)
|++++ ++|+..+++++++|.++||+.+|++++||.| +.++++++.|+++++|++||||+|++++.
T Consensus 68 dlav~---~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~------ 138 (598)
T COG1042 68 DLAVI---VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPI------ 138 (598)
T ss_pred CeeEE---EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEeccccccccccc------
Confidence 99999 7899999999999999999999999999998 46788889999999999999999999998
Q ss_pred CCCCcccccccCCCC-CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEE
Q psy16953 345 TGGMMDNILHSKLYR-PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLG 423 (806)
Q Consensus 345 ~~g~~~~~~~~~~~~-~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~ 423 (806)
.|++++|.|..... +|+++++||||+++..+++|..+.++|+|+++|.||. +|+++.|+++|+.+|+.||+|.+|+
T Consensus 139 -~glna~f~p~~~~~~~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~--ad~~~~d~~~~~~~D~~tk~i~Ly~ 215 (598)
T COG1042 139 -IGLNATFDPVFGLGRGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNA--ADRDESDLLEYLADDPRTKAIGLYI 215 (598)
T ss_pred -cccccccCcccccccCCCeEEEEechHHHHhccchhhhcCCceeEEEeecch--hhcCchHhHHHHhhCccceEEEEEe
Confidence 67899998864332 8999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccCCcch-HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHH
Q psy16953 424 EVGGVEE-YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502 (806)
Q Consensus 424 Eigg~~d-~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~ 502 (806)
| +++| ++|++++++..++||||++|+||+.. |++++.||||+++|++.+ |+++|+|+|++++++++||++.
T Consensus 216 E--~~~~~r~fl~~a~~~~~~kpii~lk~gr~~~--~akAa~shTgslag~~~~----y~Aa~~~agvir~~~~~elf~~ 287 (598)
T COG1042 216 E--GVKDGRKFLNAARAAERKKPIIALKAGRSEA--GAKAAASHTGSLAGSDEA----YDAAFKQAGVIRVESIEELFDA 287 (598)
T ss_pred c--cchhHHHHHHHHHHHhcCCCEEEEeccCCHH--HHHHHhcccccccccchh----hHHHHHhhCceeccChHHHHHH
Confidence 9 9999 99999999999999999999999999 999999999999999998 9999999999999999999999
Q ss_pred HHHHHH
Q psy16953 503 IGSVYK 508 (806)
Q Consensus 503 ~~all~ 508 (806)
++.+..
T Consensus 288 ~k~l~~ 293 (598)
T COG1042 288 AKALSH 293 (598)
T ss_pred HHHhcc
Confidence 988753
No 45
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=3.9e-49 Score=436.36 Aligned_cols=213 Identities=27% Similarity=0.354 Sum_probs=177.8
Q ss_pred CCCCccccccCCCCHHHHHHHHH--hcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLW--FQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI- 637 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll--~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al- 637 (806)
+|.+..+. .+++||++||++|| +|++|++.+.++||++||++||||+|+|| |++|+++||++|+|+|++||++++
T Consensus 136 ~g~~~~~p-~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St-~aaR~~aSt~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 136 RGQPPIPP-DPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPST-FAARVAASTGADLYSAVAAGLAALS 213 (356)
T ss_dssp TTS-------TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHH-HHHHHHHTTT--HHHHHHHHHHHHC
T ss_pred CCCCcccc-ccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccc-hhhhhhhccCcchhHHHHhhhhhcc
Confidence 46655443 34799999999999 88999999999999999999999999999 999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHH
Q psy16953 638 GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYAL 714 (806)
Q Consensus 638 G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~ 714 (806)
||+||||+++|++||+++. ++++++++|+++++++++|||||||+|+. .|||+++|+++++++. ..+++++++.
T Consensus 214 G~~hgga~~~~~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GfGH~vy~~--~DPRa~~l~~~~~~~~~~~~~~~~~~~~~ 290 (356)
T PF00285_consen 214 GPLHGGANEAAMRMLQEIG-SPENVEEYVEERLAKGERIPGFGHRVYKN--GDPRAEALLALARELGEEFPDGPLVELAE 290 (356)
T ss_dssp STTTTTHHHHHHHHHHHHS-SGGGHHHHHHHHHHTTSTTTTBCESSSSS----HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHH-hhHHHHHHHHHHHhccccccccCCCcCCC--CCCChHHHHHHHHHhhhccCCCHHHHHHH
Confidence 9999999999999999994 57899999999999999999999999974 6999999999999998 8999999999
Q ss_pred HHHHHHhc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+ ++++++||||||+|+++.+||+ |.++++++|++||++||+||++||++.+++|+||
T Consensus 291 ~ie~~~~~~~~~~~l~pNvd~~~a~l~~~lG~--------------p~~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 291 AIEEAAPEDFKERKLYPNVDFYSAALLRALGF--------------PPELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHHHHHHHHHHHHTESB-THHHHHHHHHHTT----------------GGGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHhhccccCchhhHHHHHHHHHhc--------------chhhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 99999876 2347999999999999999983 4566789999999999999999999967899998
No 46
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=1.2e-47 Score=399.91 Aligned_cols=220 Identities=49% Similarity=0.735 Sum_probs=200.0
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCC-CCcccceeeeeeccC-CChHHHHHHhhccccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGP-AVSGAHNTIVCARAG-KDLVSSLVSGLLTIGD 639 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~-~~St~~aarv~aSa~-adl~~avaagl~alG~ 639 (806)
|||+.|+++ +.||.++|++||+|+.|++.+.++|+.+|++++|||+ |+|| +++|+++||+ +|+++|++||++++||
T Consensus 1 G~~~~dL~~-~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St-~aar~~astg~~~~~~~vaag~~a~G~ 78 (227)
T cd06100 1 GYDLSDLIG-KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSA-HAARLTASAGPEDLQSAVAAGLLGIGD 78 (227)
T ss_pred CCCHHHHHh-CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHcCCccHHHHHHHHHhccCC
Confidence 789998886 7999999999999999999999999999999999999 9999 9999999999 9999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcCC----CCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAG----LIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALE 715 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~----~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ 715 (806)
+||||++.+++|++++.+.. +++.++|++.++++++|||||||+|+ ++|||++.|+++++++...+|+++++.+
T Consensus 79 ~hgga~e~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~--~~DPRa~~L~~~~~~~~~~~~~~~~~~~ 156 (227)
T cd06100 79 RFGGAGEGAARLFKEAVDSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHK--NPDPRVPRLLELARELGPAGPHLDYALA 156 (227)
T ss_pred cccChHHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999997532 68999999999999999999999996 4699999999999999888899999999
Q ss_pred HHHHHhcC-CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCC
Q psy16953 716 VEKITTSK-KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794 (806)
Q Consensus 716 ve~~~~~~-~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~ 794 (806)
+|+++.+. .++++||||||+|+++++||+ |+++++++|+++|++||+||++||++.+.+..|-+|
T Consensus 157 ~~~~~~~~~~~~l~~Nvd~~~a~~~~~lG~--------------p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~~~~~~~ 222 (227)
T cd06100 157 VEKALTAAKGKPLPLNVDGAIAAILLDLGF--------------PPGALRGLFVLGRSPGLIAHALEEKRLGQPLYRHPW 222 (227)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 99988664 236999999999999999983 334567999999999999999999987644444479
Q ss_pred Cccee
Q psy16953 795 DDISY 799 (806)
Q Consensus 795 ~~i~Y 799 (806)
++|.|
T Consensus 223 ~~i~y 227 (227)
T cd06100 223 DDIEY 227 (227)
T ss_pred hhccC
Confidence 88887
No 47
>KOG1255|consensus
Probab=100.00 E-value=1e-43 Score=356.86 Aligned_cols=283 Identities=30% Similarity=0.465 Sum_probs=251.6
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc-CCCee
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK-NKDAD 273 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~-~~Dla 273 (806)
+|++|+|+++|++++. .+.+++|| +++.|.+.|-..+ .+.+|+|+|.|++||..+ .+|..
T Consensus 35 ink~TkVi~QGfTGKqgTFHs~q~~eYg-------Tk~VgG~~pkK~G--------t~HLG~PVF~sV~eA~~~t~a~As 99 (329)
T KOG1255|consen 35 INKDTKVICQGFTGKQGTFHSQQALEYG-------TKVVGGVNPKKGG--------TTHLGLPVFNSVAEAKKETGADAS 99 (329)
T ss_pred ecCCceEEEecccCCccceeHHHHHHhC-------CceeeccCCCcCc--------ccccCchhhhhHHHHHHhhCCCce
Confidence 7899999999999985 67889988 6888887666644 577889999999998665 35655
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHH-HcCCeEEccCccccccCCccccccCCCCcccc
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAK-EKGVSIIGPATVGGLKPGCFKIGNTGGMMDNI 352 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~-~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~ 352 (806)
|| |+||+.+..++.|+++ +.|+.+|+|++|+|++++.++..+.. +...|++||||.|||+|+++||| +
T Consensus 100 vI--yVPpp~Aa~aI~eaie-aEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIG--------I 168 (329)
T KOG1255|consen 100 VI--YVPPPFAAAAIEEAIE-AEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIG--------I 168 (329)
T ss_pred EE--EeCChhHHHHHHHHHh-ccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeec--------c
Confidence 55 8999888888777776 89999999999999999998876554 57799999999999999999999 8
Q ss_pred cccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHH
Q psy16953 353 LHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYE 432 (806)
Q Consensus 353 ~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~ 432 (806)
+|.....+|.|++||+||++.++.+..-.+-|+|+|.+|++|+|++.+++|.|+|+.|.+||+|+.|+|.+||||..|++
T Consensus 169 mPg~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~ 248 (329)
T KOG1255|consen 169 MPGHIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEE 248 (329)
T ss_pred cccccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHhc---CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHh
Q psy16953 433 VCAALKDK---RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 433 f~~a~r~~---~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~ 509 (806)
-++.+++. ...||||.+.+|.+++ ..+.++|+||+......+|..+-++|+.+||++++|+..|...+...+.+
T Consensus 249 AA~flk~~nSg~~~kPVvsFIAG~tAp---pGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~ 325 (329)
T KOG1255|consen 249 AAEFLKEYNSGSTAKPVVSFIAGVTAP---PGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLK 325 (329)
T ss_pred HHHHHHHhccCCCCCceeEEeecccCC---CcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHh
Confidence 66666663 3689999999999997 88999999999988889999999999999999999999998877665554
Q ss_pred h
Q psy16953 510 L 510 (806)
Q Consensus 510 L 510 (806)
+
T Consensus 326 ~ 326 (329)
T KOG1255|consen 326 L 326 (329)
T ss_pred c
Confidence 4
No 48
>KOG2617|consensus
Probab=100.00 E-value=1e-39 Score=348.93 Aligned_cols=273 Identities=21% Similarity=0.250 Sum_probs=230.5
Q ss_pred HHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccccCCCCCCCCCccc--------------chHHhhccccccccc
Q psy16953 480 VKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQPELPPPTVPMD--------------YSWARELGLIRKPAS 545 (806)
Q Consensus 480 ~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~~~~~~P~~~~PMd--------------~~~a~~~g~~r~~~~ 545 (806)
.+...+.+-+ ++++.+..+++++ |.+.|||. ++.||..| +.|..+
T Consensus 128 ~~~~~~a~rs--------~vP~~v~~~idsm------------P~d~HPM~q~~~a~~al~~~s~fa~ay~~G-~~k~~y 186 (458)
T KOG2617|consen 128 ALSFELAQRS--------AVPQGVLDMIDSM------------PKDLHPMAQLAAAVLALKIFSPFAKAYLRG-IGKYKY 186 (458)
T ss_pred HHHHHHHHhc--------cccHHHHHHHHhC------------CcccchHHHHHHHHHhccccccchhhhhhc-cchhhc
Confidence 3555555544 2344455556666 99999998 56789999 999999
Q ss_pred ceeccccccc---c----------ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcc
Q psy16953 546 FMTSICDERG---Q----------ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSG 612 (806)
Q Consensus 546 ~~t~i~d~~~---~----------~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St 612 (806)
|..+++|+.. . ++.-+|.+++ ++++||++||..|+.-. .++.+++++.++++|+|||.++++
T Consensus 187 w~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~~---~~~~dys~Nf~~mlg~~--~~~f~~lmrly~~iHadHE~gnVs 261 (458)
T KOG2617|consen 187 WQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPKP---DPNLDYSANFARMLGSR--QPDFAQLMRLYVGIHADHEGGNVS 261 (458)
T ss_pred ccccHHHHHHHHHhccHHHHHHHHHHhcCCCCCC---CcccchhHhHHHHHccC--ChHHHHHHHHeeeeecccccCcHH
Confidence 9999999842 1 1222344444 45799999999987533 467899999999999999999999
Q ss_pred cceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHHHHH----HHhc--CCCCHHHHHHHHHhcCCcccccCCCCCC
Q psy16953 613 AHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAIQFS----AAYD--AGLIPMEFVNEMRKKGKLIMGIGHRVKS 685 (806)
Q Consensus 613 ~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~~l~----e~~~--~~~~~~~~v~~~~~~~~~ipGfGH~vy~ 685 (806)
+|+.++++|+. |+|.+++||+++| ||+||+|+|++++||. |+.+ +.++..+|++..+..++.||||||++++
T Consensus 262 Ah~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr 340 (458)
T KOG2617|consen 262 AHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLR 340 (458)
T ss_pred HHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccccc
Confidence 99999999999 9999999999999 9999999999999998 6642 4678899999999999999999999996
Q ss_pred CCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhh
Q psy16953 686 INNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKIT----TS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVE 759 (806)
Q Consensus 686 ~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~----~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~ 759 (806)
++|||+..+++++.+.++.+|++++...++++. ++ +++|++||||+++|+++..+| +++
T Consensus 341 --~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yG-----l~e-------- 405 (458)
T KOG2617|consen 341 --KTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYG-----LPE-------- 405 (458)
T ss_pred --CCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcC-----CcH--------
Confidence 689999999999999999999999999998876 22 467999999999999999997 332
Q ss_pred ccccceehhhhhhhhhHHhHHHHhhcCCCcccCCC
Q psy16953 760 MGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794 (806)
Q Consensus 760 ~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~ 794 (806)
.-++++||.++|++|.++|.+|.+..+.||.||..
T Consensus 406 ~~fyTVLFgVsRa~Gvlsqliw~ralg~pieRPks 440 (458)
T KOG2617|consen 406 LFFYTVLFGVSRALGVLSQLIWDRALGLPIERPKS 440 (458)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhCCcccCccc
Confidence 24568999999999999999999999999999974
No 49
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.1e-38 Score=350.59 Aligned_cols=177 Identities=46% Similarity=0.780 Sum_probs=157.6
Q ss_pred CcccccchhchHHHHHhhCC-CCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHH
Q psy16953 1 MSAKAISEATGKDIINRNLD-PNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKG 79 (806)
Q Consensus 1 ms~k~i~Ey~~K~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e 79 (806)
||+|+|||||||+||++|+. .+.++.|...+.++..+.+.++.++++||+..++|||||||+|||||+||||++.|++|
T Consensus 1 ~~~~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~E 80 (423)
T PLN02235 1 MARKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
T ss_pred CCcccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHH
Confidence 99999999999999999944 33344444443334444555666789999988899999999999999999999999999
Q ss_pred HHHHHHHHcCCee-------------------------------------------------------------------
Q psy16953 80 AQSWISERMGKDQ------------------------------------------------------------------- 92 (806)
Q Consensus 80 ~~~~~~~~~g~~i------------------------------------------------------------------- 92 (806)
|++|++++||+++
T Consensus 81 a~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~gl~~ 160 (423)
T PLN02235 81 VATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTS 160 (423)
T ss_pred HHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCCCCCH
Confidence 9999999999984
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fg 240 (423)
T PLN02235 161 EICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240 (423)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 241 r~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~ii 320 (423)
T PLN02235 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV 320 (423)
T ss_pred CCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHH
Confidence
Q ss_pred ------------EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEE
Q psy16953 93 ------------VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLF 160 (806)
Q Consensus 93 ------------~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~ 160 (806)
..+||||||+|||+||+||+||++|++++..++...++||||||.|||++||+++|++.+++.|+||+
T Consensus 321 l~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~ 400 (423)
T PLN02235 321 IDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIE 400 (423)
T ss_pred HhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEE
Confidence 35899999999999999999999999998888888999999999999999999999988888899999
Q ss_pred EeCCcchHHHHHHHHhc
Q psy16953 161 VFGPETHMTAIVGMALG 177 (806)
Q Consensus 161 ~~~~~~~m~~~~~~a~~ 177 (806)
+|++||||++||++|++
T Consensus 401 ~~~~~~~m~~a~~~av~ 417 (423)
T PLN02235 401 VYGPEATMTGICKQAID 417 (423)
T ss_pred EeCCCCCHHHHHHHHHh
Confidence 99999999999999998
No 50
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=6.9e-37 Score=346.50 Aligned_cols=206 Identities=17% Similarity=0.263 Sum_probs=176.3
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.++|++..+.+|+. |+++| ++|+..+++++++|.++| +.++|+|+||+.++|++|+++|+++|+||+|||| |++
T Consensus 105 ~~t~~~a~~~lpe~-DLAvI---sVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmGPNC-G~~ 178 (555)
T PRK06091 105 VRRWDSACQKLPDA-NLALI---SVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAREKGLLVMGPDC-GTA 178 (555)
T ss_pred cccHHHHHhcCCCC-CEEEE---ecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHHHcCCEEECCCC-hhh
Confidence 44555544335554 88888 567888899999999999 6799999999999999999999999999999999 766
Q ss_pred cCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCC----CCCCHHHHHHHhh
Q psy16953 336 KPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRY----PGTTFMDHILRYQ 411 (806)
Q Consensus 336 ~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~----~d~~~~D~l~~l~ 411 (806)
+. .|++.+|.+. ++||+||+|||||+++.++++|+.++|+|||++||+||+.+ .|+++.|+|+||.
T Consensus 179 ~i--------~gl~lsF~~~--~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~ 248 (555)
T PRK06091 179 MI--------AGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLS 248 (555)
T ss_pred hh--------cCCcccccCC--CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHh
Confidence 63 3566667543 46999999999999999999999999999999999999943 3899999999999
Q ss_pred cCCCccEEEEEEccC--CcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC
Q psy16953 412 ADPEVKMIVLLGEVG--GVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG 489 (806)
Q Consensus 412 ~Dp~Tk~I~ly~Eig--g~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG 489 (806)
+||+|++|++|+|++ +++ ++|+++++++ +||||++|+|+++. |+ +|+|
T Consensus 249 ~DP~TkvIvly~kppaE~v~-~~fl~aar~~--~KPVVvlk~Grs~~--g~-------------------------~q~G 298 (555)
T PRK06091 249 ADEKSEVIAFVSKPPAEAVR-LKIINAMKAT--GKPVVALFLGYTPA--VA-------------------------RDEN 298 (555)
T ss_pred hCCCCcEEEEEEecCchHHH-HHHHHHHhhC--CCCEEEEEecCCch--hh-------------------------hcCC
Confidence 999999999999321 666 4999999985 89999999999997 32 8999
Q ss_pred CcccCChhhHHHHHHHHH
Q psy16953 490 AHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 490 vi~v~~~~EL~~~~~all 507 (806)
+++++|++|+.+.+..+.
T Consensus 299 Vi~a~tleEl~~~A~~la 316 (555)
T PRK06091 299 VWFASTLDEAARLACLLS 316 (555)
T ss_pred eEEeCCHHHHHHHHHHHh
Confidence 999999999999998765
No 51
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=2.9e-37 Score=297.50 Aligned_cols=136 Identities=27% Similarity=0.389 Sum_probs=98.6
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHH
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALK 438 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r 438 (806)
||+||+|||||+++.++++++.++|+|||++||+||+ +|+++.|+|+||.+||+||+|++|+| +++| ++|+++++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~--~dv~~~d~l~~~~~D~~t~~I~ly~E--~~~d~~~f~~~~~ 76 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNE--ADVDFADLLEYLAEDPDTRVIVLYLE--GIGDGRRFLEAAR 76 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT---SSS-HHHHHHHHCT-SS--EEEEEES----S-HHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCcc--ccCCHHHHHHHHhcCCCCCEEEEEcc--CCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999 89999999999999999999999999 9999 99999999
Q ss_pred hcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHH
Q psy16953 439 DKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGS 505 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~a 505 (806)
++++.||||+||+|||+. |++++.||||+++|++.+ |+++|+|+|+++++|++||++.++.
T Consensus 77 ~a~~~KPVv~lk~Grt~~--g~~aa~sHTgslag~~~~----~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 77 RAARRKPVVVLKAGRTEA--GARAAASHTGSLAGDDAV----YDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp HHCCCS-EEEEE-----------------------HHH----HHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred HHhcCCCEEEEeCCCchh--hhhhhhccCCcccCcHHH----HHHHHHHcCceEECCHHHHHHHHHh
Confidence 998779999999999998 999999999999999988 9999999999999999999998753
No 52
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=99.97 E-value=1.9e-31 Score=288.24 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=74.4
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
|+|||||||+||.+|++ |++ ++.+ +++++|+...+..|+..++|||+|+|.|||||+|+||+++|++||++|
T Consensus 1 M~lhEYqaKelf~~~Gi--Pvp-~g~v-----~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~ 72 (387)
T COG0045 1 MNLHEYQAKELFAKYGI--PVP-PGYV-----ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEA 72 (387)
T ss_pred CcHHHHHHHHHHHHcCC--CCC-Ccee-----eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHH
Confidence 68999999999999999 998 7777 899999999888888889999999999999999999999999999999
Q ss_pred HHHHcC
Q psy16953 84 ISERMG 89 (806)
Q Consensus 84 ~~~~~g 89 (806)
+++++|
T Consensus 73 a~~~lg 78 (387)
T COG0045 73 AEEILG 78 (387)
T ss_pred HHHHhC
Confidence 999999
No 53
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=99.93 E-value=4.1e-26 Score=256.18 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=73.3
Q ss_pred ccccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhcccccc--CCCeEEccCccccccCcc-------Cceee
Q psy16953 3 AKAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLE--SSKLVAKPDQLIKRRGKL-------GLIKV 73 (806)
Q Consensus 3 ~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~--~~~~VvKpd~l~~~RGK~-------Glv~l 73 (806)
.|+|||||+|+||++|+. |++ ++.+ ++|++|+.+++++|+ ..++|+|+|+|.|+|||+ |+|++
T Consensus 27 ~m~l~EyqaK~LL~~~GI--pvp-~~~v-----a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l 98 (422)
T PLN00124 27 RLNIHEYQGAELMSKYGV--NVP-KGAA-----ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHI 98 (422)
T ss_pred ccCCCHHHHHHHHHHcCC--CCC-Ccee-----eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEE
Confidence 579999999999999999 888 7777 889999999998886 679999999999999977 99999
Q ss_pred cCCHHHHHHHHHHHcCC
Q psy16953 74 NTDFKGAQSWISERMGK 90 (806)
Q Consensus 74 ~~~~~e~~~~~~~~~g~ 90 (806)
+.+ +|+++++++++|+
T Consensus 99 ~~~-eea~~aa~~il~~ 114 (422)
T PLN00124 99 VKK-DKAEELAGKMLGQ 114 (422)
T ss_pred CCH-HHHHHHHHHHhcc
Confidence 987 9999999999998
No 54
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=99.79 E-value=4.7e-19 Score=198.85 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=74.7
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
|+|||||+|+||.+|++ |++ +..+ ++|++|+.++...|+..++|||+|+|+++|||+|+|+++.|++|++++
T Consensus 1 m~l~E~eak~lL~~yGI--pvp-~~~~-----~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a 72 (392)
T PRK14046 1 MDIHEYQAKELLASFGV--AVP-RGAL-----AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDA 72 (392)
T ss_pred CCCcHHHHHHHHHHcCC--CCC-CceE-----ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHH
Confidence 68999999999999999 888 7777 899999999999999767899999999999999999999999999999
Q ss_pred HHHHcCC
Q psy16953 84 ISERMGK 90 (806)
Q Consensus 84 ~~~~~g~ 90 (806)
+++++++
T Consensus 73 ~~~ll~~ 79 (392)
T PRK14046 73 AEDLLGK 79 (392)
T ss_pred HHHHhcc
Confidence 9999998
No 55
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.78 E-value=2.2e-19 Score=168.74 Aligned_cols=108 Identities=18% Similarity=0.332 Sum_probs=85.0
Q ss_pred ceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeE
Q psy16953 203 TKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADV 274 (806)
Q Consensus 203 t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlav 274 (806)
++++|+|.+.+ .+++|++.|| +||||||++ +++ |++||+|++| +|+.+|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~-----------~v~~Vnp~~--------~~i~G~~~y~sl~e-~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY-----------EVYPVNPKG--------GEILGIKCYPSLAE-IPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT------------EEEEESTTC--------SEETTEE-BSSGGG-CSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC-----------EEEEECCCc--------eEECcEEeeccccC-CCCCCCEEE
Confidence 47999998855 4889999877 899999995 667 6999999999 899999999
Q ss_pred EEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccC
Q psy16953 275 LVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKP 337 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p 337 (806)
+ +.|+..+++++++|.++|+|.++++++ ..++++.++|+++|+|++||||+|+++|
T Consensus 61 v---~~~~~~~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 61 V---CVPPDKVPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp E----S-HHHHHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEESS-HHHHHT
T ss_pred E---EcCHHHHHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCCcceEEcC
Confidence 8 778899999999999999999998887 5788899999999999999999999876
No 56
>KOG1447|consensus
Probab=99.78 E-value=8.6e-19 Score=179.98 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=71.0
Q ss_pred ccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCcc-------CceeecCCH
Q psy16953 5 AISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKL-------GLIKVNTDF 77 (806)
Q Consensus 5 ~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~-------Glv~l~~~~ 77 (806)
.+.|||+|+||.+|++ .++ ++.+ .++..|+.++...++....|||+|.|.|+|||. |+|.+.++.
T Consensus 21 NLqEfQSK~~l~k~Gv--~vQ-~F~V-----a~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k 92 (412)
T KOG1447|consen 21 NLQEFQSKEILSKNGV--RVQ-RFFV-----ADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDK 92 (412)
T ss_pred cHHHhhhHHHHHhcCe--eEE-EEEE-----ecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCH
Confidence 4689999999999988 665 5555 788888988888898888999999999999985 899999999
Q ss_pred HHHHHHHHHHcCCee
Q psy16953 78 KGAQSWISERMGKDQ 92 (806)
Q Consensus 78 ~e~~~~~~~~~g~~i 92 (806)
.++-+.++++.|..+
T Consensus 93 ~~vl~l~~qMIG~rL 107 (412)
T KOG1447|consen 93 NVVLQLAKQMIGYRL 107 (412)
T ss_pred hHHHHHHHHHHhhhh
Confidence 999999999999877
No 57
>KOG2799|consensus
Probab=99.75 E-value=1e-18 Score=185.84 Aligned_cols=159 Identities=26% Similarity=0.268 Sum_probs=145.9
Q ss_pred ccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCcc-------CceeecCCH
Q psy16953 5 AISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKL-------GLIKVNTDF 77 (806)
Q Consensus 5 ~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~-------Glv~l~~~~ 77 (806)
.||||.+-+||++|++ .++ ++.+ +.|+|||-+...-|++..+|||+|+|.|+|||. |+||+..++
T Consensus 24 ~~hey~~~~ll~~~Gv--~vp-~g~v-----A~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p 95 (434)
T KOG2799|consen 24 GIHEYRSAALLRKYGI--NVP-LGYV-----AKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSP 95 (434)
T ss_pred hHHHHHHHHHHHHcCC--CCC-CCcc-----cCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeCh
Confidence 5899999999999988 776 5555 899999999999999999999999999999995 899999999
Q ss_pred HHHHHHHHHHcCCee-----------------------------------------------------------------
Q psy16953 78 KGAQSWISERMGKDQ----------------------------------------------------------------- 92 (806)
Q Consensus 78 ~e~~~~~~~~~g~~i----------------------------------------------------------------- 92 (806)
+|+++...+++|+.+
T Consensus 96 ~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k 175 (434)
T KOG2799|consen 96 QEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIK 175 (434)
T ss_pred HHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhc
Confidence 999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 176 ~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~fR 255 (434)
T KOG2799|consen 176 KPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFR 255 (434)
T ss_pred ccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 256 q~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVGg~Atve~v~eaf~li 335 (434)
T KOG2799|consen 256 QKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVEQVREAFSLI 335 (434)
T ss_pred hhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCCcHHHHHHHHHHH
Confidence
Q ss_pred --------EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC
Q psy16953 93 --------VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP 164 (806)
Q Consensus 93 --------~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~ 164 (806)
+..||||||.+||-+|. ||+.|.|+ .+.++|||||+.|||.++|..++.++ |+-|..|++
T Consensus 336 tsd~kv~ailvnifGgi~rCDvia~---Giv~aar~-----l~~~ipiv~rlqgt~v~~ak~~i~~s----gmri~~~de 403 (434)
T KOG2799|consen 336 TSDKKVMAILVNIFGGIMRCDVIAF---GIVLAARE-----LELNIPIVVRLQGTRVEAAKPIINTS----GMRIRSFDE 403 (434)
T ss_pred hcChhHHHHHHHHhcCeeeccceec---chhhhhhh-----hhcCCCEEEEecCCchhhhhhhHhhc----CceEEechh
Confidence 45689999999999994 99999999 78899999999999999999999999 688899999
Q ss_pred cchHHHHHHHHhcCCCCCCCCC
Q psy16953 165 ETHMTAIVGMALGKKEIPSETS 186 (806)
Q Consensus 165 ~~~m~~~~~~a~~~~~~~~~~~ 186 (806)
+.++++|+++...+-....
T Consensus 404 ---ldeaa~~~v~~S~ivela~ 422 (434)
T KOG2799|consen 404 ---LDEAAKKAVGGSTIVELAS 422 (434)
T ss_pred ---hhHHhhhhcccchHHHHhh
Confidence 9999999998877655443
No 58
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=99.74 E-value=1.3e-18 Score=178.40 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=71.7
Q ss_pred ccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 5 AISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 5 ~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
+|||||||+||++|++ |++ ++.+ ++|++|+.++++||+..++|||||+|+|||||+||||++.|++||++|+
T Consensus 1 ~l~EyqaK~ll~~~gi--~vp-~g~~-----a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a 72 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGI--PVP-RGVV-----ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAA 72 (202)
T ss_dssp BE-HHHHHHHHHCTT-------SEEE-----ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHcCC--CCC-Ceee-----cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHH
Confidence 6999999999999999 888 8888 8999999999999999899999999999999999999999999999999
Q ss_pred HHHcCCee
Q psy16953 85 SERMGKDQ 92 (806)
Q Consensus 85 ~~~~g~~i 92 (806)
++++|+++
T Consensus 73 ~~mlg~~l 80 (202)
T PF08442_consen 73 KEMLGKTL 80 (202)
T ss_dssp HTTTTSEE
T ss_pred HHHhCCce
Confidence 99999998
No 59
>KOG1254|consensus
Probab=99.69 E-value=3e-18 Score=187.99 Aligned_cols=90 Identities=28% Similarity=0.404 Sum_probs=85.3
Q ss_pred EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCcchHHHHH
Q psy16953 93 VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPETHMTAIV 172 (806)
Q Consensus 93 ~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~~~m~~~~ 172 (806)
+|+.++|||+||+..+++|.+|+.+|.++..++.. .+.+++|+.|+||++|+.-|+..++..++|++++|.+-+|+.++
T Consensus 408 ~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfgg-ald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~Gighriksi~ 486 (600)
T KOG1254|consen 408 AVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGG-ALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVYGIGHRIKSIN 486 (600)
T ss_pred eeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcc-hhhHHHHhcChhhhccCchHHHhhhhhCCCceecCCcceeeccC
Confidence 99999999999999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCC
Q psy16953 173 GMALGKKEIPS 183 (806)
Q Consensus 173 ~~a~~~~~~~~ 183 (806)
...++......
T Consensus 487 n~d~rv~~lk~ 497 (600)
T KOG1254|consen 487 NPDKRVEILKA 497 (600)
T ss_pred CcccchhhHHH
Confidence 88888776543
No 60
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.66 E-value=5.5e-16 Score=174.33 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=70.9
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
|+++||++|+||++|+. |++ +..+ .+|.+|+.+....++..++|||||+|.|+|||+|+|+++.|.+|++++
T Consensus 1 m~L~E~~aK~ll~~~GI--pvp-~~~~-----~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a 72 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGI--PVP-RGYV-----ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAA 72 (386)
T ss_pred CCCcHHHHHHHHHHcCC--CCC-Ccee-----eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHH
Confidence 58999999999999999 887 6666 578999998888888679999999999999999999999999999999
Q ss_pred HHHHcC
Q psy16953 84 ISERMG 89 (806)
Q Consensus 84 ~~~~~g 89 (806)
++++++
T Consensus 73 ~~~l~~ 78 (386)
T TIGR01016 73 AEKLLG 78 (386)
T ss_pred HHHHhc
Confidence 988876
No 61
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.60 E-value=2.9e-14 Score=160.57 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=74.5
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
|+++||++|+||.+|++ |++ +..+ ++|.+|+.+...+++..++|||||.|.++|||+|+|+++.|++|++++
T Consensus 1 m~l~e~~ak~lL~~~gI--pvp-~~~~-----~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a 72 (388)
T PRK00696 1 MNLHEYQAKELFAKYGV--PVP-RGIV-----ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREF 72 (388)
T ss_pred CCCCHHHHHHHHHHcCC--CCC-CCee-----eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHH
Confidence 68999999999999999 888 6777 889999999999994479999999999999999999999999999999
Q ss_pred HHHHcCCee
Q psy16953 84 ISERMGKDQ 92 (806)
Q Consensus 84 ~~~~~g~~i 92 (806)
+++++++.+
T Consensus 73 ~~~i~~~~~ 81 (388)
T PRK00696 73 AKQILGMTL 81 (388)
T ss_pred HHHhhccce
Confidence 999998754
No 62
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.06 E-value=6.1e-10 Score=109.54 Aligned_cols=122 Identities=30% Similarity=0.382 Sum_probs=97.1
Q ss_pred EeCChhHHHHHHHHHHhc--------------CCceeEEEeecCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q psy16953 366 VSRSGGMSNELNNIISKA--------------TNGVYEGVAIGGDRYP---------GTTFMDHILRYQADPEVKMIVLL 422 (806)
Q Consensus 366 vSQSG~l~~~l~~~~~~~--------------g~G~s~~vs~Gn~~~~---------d~~~~D~l~~l~~Dp~Tk~I~ly 422 (806)
++.||+|+++.++.+++. |.+.+.++.+|++.|. ...+.|.|+.+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999776 78999999999999999999999
Q ss_pred EccC-Ccch---HHHHHHHHhcC---CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC
Q psy16953 423 GEVG-GVEE---YEVCAALKDKR---ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA 490 (806)
Q Consensus 423 ~Eig-g~~d---~~f~~a~r~~~---~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv 490 (806)
+|+| |--+ ..+++++++.. ++||||++..|+.+. .+..+.|.+.|.......+....++++.+|+
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d---pq~~~~~~~~L~~~G~~v~~s~~~A~~~A~a 152 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD---PQGRMGQAGALEDAGVIVAESNAQAARAAGA 152 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH---TTSCHHHHHHHHCTTCSCHHHHHHHHHHHTH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC---CCCcHHHHHHHHhCCCcccccHHHHHHHcCC
Confidence 9977 4444 45778888776 899999999999997 4455566655554444444555555555543
No 63
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=98.94 E-value=7.5e-10 Score=105.23 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCCceEEEEccChhH-------HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCC
Q psy16953 200 QEQTKAIVWGMQTRA-------VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKD 271 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~-------~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~D 271 (806)
+...+|+|+|+|.++ .+.|++.|| +|+||||++. | ++| |.+||+|++| +|+++|
T Consensus 14 ~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY-----------~ViPVNP~~~-----~-~eiLG~k~y~sL~d-Ipe~ID 75 (140)
T COG1832 14 KSAKTIAVVGASDKPDRPSYRVAKYLQQKGY-----------RVIPVNPKLA-----G-EEILGEKVYPSLAD-IPEPID 75 (140)
T ss_pred HhCceEEEEecCCCCCccHHHHHHHHHHCCC-----------EEEeeCcccc-----h-HHhcCchhhhcHHh-CCCCCc
Confidence 345689999998664 889999999 9999999753 2 455 6999999999 999998
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
+.-+ |- +++.++++++++.+.|+| ++.+.-|+.- ++..+.+++.|+.++==-|+.+
T Consensus 76 iVdv--FR-~~e~~~~i~~eal~~~~k-v~W~QlGi~n---~ea~~~~~~aG~~vV~nrCi~~ 131 (140)
T COG1832 76 IVDV--FR-RSEAAPEVAREALEKGAK-VVWLQLGIRN---EEAAEKARDAGLDVVMDRCIMI 131 (140)
T ss_pred EEEE--ec-ChhhhHHHHHHHHhhCCC-eEEEecCcCC---HHHHHHHHHhCcHHHHHhhHHH
Confidence 7555 65 667889999998889987 4556777632 1245566777887765555543
No 64
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.19 E-value=3.5e-06 Score=76.68 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=63.6
Q ss_pred CCCceEEEEccChhHHH----hhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC--CCe
Q psy16953 200 QEQTKAIVWGMQTRAVQ----SMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN--KDA 272 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~~~----~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~--~Dl 272 (806)
|++++++|||+++.-.+ .....|| . .-.++-++|+. +| +++ ++|+|.++++ +.+. +|.
T Consensus 1 nk~~~v~ivGag~~G~a~~~~~~~~~g~-------~-i~~~~dv~~~~-----~G-~~i~gipV~~~~~~-l~~~~~i~i 65 (96)
T PF02629_consen 1 NKKTNVIIVGAGNLGRALLYNGFSMRGF-------G-IVAVFDVDPEK-----IG-KEIGGIPVYGSMDE-LEEFIEIDI 65 (96)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHHCE-------C-EEEEEEECTTT-----TT-SEETTEEEESSHHH-HHHHCTTSE
T ss_pred CCCCeEEEECCCCcHHHHHHhHHHHcCC-------C-CEEEEEcCCCc-----cC-cEECCEEeeccHHH-hhhhhCCCE
Confidence 57899999999977322 1222333 1 23788999973 34 566 5999999999 6776 788
Q ss_pred eEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC
Q psy16953 273 DVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~~gvk~~viis~G 306 (806)
+++ ++|+..+.++.++|.++|||.++++|+|
T Consensus 66 aii---~VP~~~a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 66 AII---TVPAEAAQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp EEE---ES-HHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred EEE---EcCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 877 4577777777777777999999999986
No 65
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.89 E-value=0.0029 Score=73.21 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=139.2
Q ss_pred CCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 201 EQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 201 ~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+.-.|.++..|+.....+++..- .|. .|-=+-|+-+ .+..+ -+..+-+.+-+.++.-+|++++-
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~--~~g----~g~s~~vs~G---------n~~d~-~~~d~l~~l~~D~~t~~I~ly~E 212 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAE--KNG----VGFSYFVSLG---------NKADI-DESDLLEYLADDPDTKVILLYLE 212 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHH--hcC----CCcceEEECC---------chhhC-CHHHHHHHHhhCCCCCEEEEEec
Confidence 34569999988876444443210 000 2333334432 11111 11222222445566666655654
Q ss_pred Ch---hhHHHHHHHhcCCCCCEEEEEcCCCCHHH--------------HHHHHHHHHHcCCeEEccCccccccCCccccc
Q psy16953 281 LR---SAYDSTIETLGFPQIRSIAIIAEGIPENM--------------TRKLNLLAKEKGVSIIGPATVGGLKPGCFKIG 343 (806)
Q Consensus 281 ~~---~~~~~~le~~~~~gvk~~viis~Gf~E~~--------------~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig 343 (806)
.- ...-++.+.+. .+-+ +|++-.|-.+.- .+-..++.++.|+..+ -+.--+++-.
T Consensus 213 ~~~~~~~f~~aa~~a~-~~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~----- 284 (447)
T TIGR02717 213 GIKDGRKFLKTAREIS-KKKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLA----- 284 (447)
T ss_pred CCCCHHHHHHHHHHHc-CCCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHH-----
Confidence 32 23344444444 3544 666666655521 1223345667775443 1111111110
Q ss_pred cCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeE---------------EEeecCCCCCCC-------
Q psy16953 344 NTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYE---------------GVAIGGDRYPGT------- 401 (806)
Q Consensus 344 ~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~---------------~vs~Gn~~~~d~------- 401 (806)
..+.....++-.+||+||-||+.+..+.|.+.+.|+-+-. ..+.+|- .|+
T Consensus 285 ------~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NP--lDl~~~~~~~ 356 (447)
T TIGR02717 285 ------RLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNP--VDVLGDATPE 356 (447)
T ss_pred ------HHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCC--EecCCCCCHH
Confidence 0122122344567999999999999999999999976552 3455554 333
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhc--C-CCCCEEEEEeCcCcCcCcccccccccCCcCCCCccc
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDK--R-ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAET 477 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~--~-~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~ 477 (806)
.+.+.++.+.+||++++|++..=.++..+ ..+++++.++ + .+|||++.-.|....
T Consensus 357 ~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg~~~--------------------- 415 (447)
T TIGR02717 357 RYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGGKSV--------------------- 415 (447)
T ss_pred HHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCCccH---------------------
Confidence 56789999999999999986543333433 3444444432 1 389997764431111
Q ss_pred HHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 478 AVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 478 a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
......|+++|+...+++++-...+..++
T Consensus 416 -~~~~~~L~~~Gip~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 416 -DPAKRILEENGIPNYTFPERAVKALSALY 444 (447)
T ss_pred -HHHHHHHHhCCCCccCCHHHHHHHHHHHH
Confidence 12556789999999999998766665443
No 66
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=97.86 E-value=1.7e-05 Score=78.35 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCC-eeE--EEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHH-----HHHHHH
Q psy16953 77 FKGAQSWISERMGK-DQV--VLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQ-----EGLRII 148 (806)
Q Consensus 77 ~~e~~~~~~~~~g~-~i~--~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~-----eG~~~l 148 (806)
.+...++++..+.. +++ ++|+++||.+|+++|. ++++++++... ...++|||+|+.|||.+ ++.++|
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~---~l~~a~~~~~~--~~~~~pvVa~v~GT~~dpq~~~~~~~~L 132 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAA---GLIPAIKEAKA--EGRKKPVVARVCGTNADPQGRMGQAGAL 132 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHH---HHHHHHSHCTH--TTT-SEEEEEEESTTCHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHH---HHHHHHHhccc--cCCCCcEEEEeeeecCCCCCcHHHHHHH
Confidence 45667777776664 454 4568999999999996 89999999322 23899999999999999 999999
Q ss_pred HHhcccCCccEEEeCCcchHHHHHHHHh
Q psy16953 149 REVGKTLGIPLFVFGPETHMTAIVGMAL 176 (806)
Q Consensus 149 ~~~g~~~g~~i~~~~~~~~m~~~~~~a~ 176 (806)
++.| +.++.+ ..+|++.|.
T Consensus 133 ~~~G------~~v~~s---~~~A~~~A~ 151 (153)
T PF00549_consen 133 EDAG------VIVAES---NAQAARAAG 151 (153)
T ss_dssp HCTT------CSCHHH---HHHHHHHHT
T ss_pred HhCC------Cccccc---HHHHHHHcC
Confidence 9997 556666 777777764
No 67
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.20 E-value=0.0022 Score=72.77 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=90.7
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAAL 437 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~ 437 (806)
..|+|++++.+|+++...+|.+...|.-...++.+|+. ...-.+.+.++-+.+||++++|++++- |++.+ ..+++.+
T Consensus 255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~-a~~~~~~~al~~l~~dp~vd~ilv~i~-gg~~~~~~va~~i 332 (386)
T TIGR01016 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGG-ASAERVREALKLVLSDKSVKVVFINIF-GGITRCDLVAKGL 332 (386)
T ss_pred cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCC-CCHHHHHHHHHHHHcCCCCCEEEEECC-CCCCCHHHHHHHH
Confidence 47999999999999999999999999988999999876 244567889999999999999998764 56665 4555554
Q ss_pred Hhc----CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--CcccCChhhHHHHH
Q psy16953 438 KDK----RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--AHVPSSFDTLGDII 503 (806)
Q Consensus 438 r~~----~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--vi~v~~~~EL~~~~ 503 (806)
.++ ..+|||++.-.|.... .....|+++| +...+++++....+
T Consensus 333 ~~a~~~~~~~kPvvv~~~g~~~~-----------------------~~~~~L~~~G~~ip~~~~~~~Av~~~ 381 (386)
T TIGR01016 333 VEALKEVGVNVPVVVRLEGTNVE-----------------------EGKKILAESGLNIIFATSMEEAAEKA 381 (386)
T ss_pred HHHHHhcCCCCcEEEEeCCccHH-----------------------HHHHHHHHcCCCccccCCHHHHHHHH
Confidence 443 2349997765542221 1556789999 88888887754443
No 68
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.19 E-value=0.0014 Score=74.31 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHcCCe-e--EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHh
Q psy16953 75 TDFKGAQSWISERMGKD-Q--VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREV 151 (806)
Q Consensus 75 ~~~~e~~~~~~~~~g~~-i--~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~ 151 (806)
.+.+..++-++..+..+ + =+++++||+++|+.+|+ +|++++++ .+.++||++++.|++.++++++|++.
T Consensus 293 ~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~---~i~~~~~~-----~~~~kPvv~~~~g~~~~~~~~~L~~~ 364 (388)
T PRK00696 293 ATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAE---GIIAAVKE-----VGVTVPLVVRLEGTNVELGKKILAES 364 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHH---HHHHHHHh-----cCCCCcEEEEeCCCCHHHHHHHHHHC
Confidence 35556666666666432 3 33457899999999995 79999887 34688999999999999999999998
Q ss_pred cccCCccEEEeCCcchHHHHHHHHhcC
Q psy16953 152 GKTLGIPLFVFGPETHMTAIVGMALGK 178 (806)
Q Consensus 152 g~~~g~~i~~~~~~~~m~~~~~~a~~~ 178 (806)
|+|+.+|.+ +++|++.+.++
T Consensus 365 ----Gi~ip~f~~---pe~A~~al~~~ 384 (388)
T PRK00696 365 ----GLNIIAADT---LDDAAQKAVEA 384 (388)
T ss_pred ----CCCceecCC---HHHHHHHHHHH
Confidence 799999999 99999887754
No 69
>PRK12349 citrate synthase 3; Provisional
Probab=97.11 E-value=0.0025 Score=71.89 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=70.0
Q ss_pred ccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeee
Q psy16953 542 KPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVC 619 (806)
Q Consensus 542 ~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~ 619 (806)
--...+|.|+...+ ..++||||++.|+.+ +.+|.++++++|+|+.|++.+.+.++..| .+|+.-++......-.
T Consensus 11 g~~~~~S~IS~id~~~g~L~YRGydi~dLa~-~~sFeeva~LL~~G~LP~~~e~~~f~~~L---~~~~~~p~~v~~~l~~ 86 (369)
T PRK12349 11 GVIAAETKISFLDTVKGEIVIQGYDLIELSK-TKEYLDIVHLLLEEHLPNEDEKATLEKKL---KEEYAVPEGVFNILKA 86 (369)
T ss_pred CCeeeeeeceeEeCCCCEEEECCccHHHHHc-cCCHHHHHHHHHCCCCCCHHHHHHHHHHH---HhccCCCHHHHHHHHh
Confidence 34455677776643 569999999988886 68999999999999999999999999998 6888877763333222
Q ss_pred eccCCChHHHHHHhhcccc
Q psy16953 620 ARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 620 aSa~adl~~avaagl~alG 638 (806)
....+++...+.+++.+++
T Consensus 87 ~p~~~~pm~~l~~~vs~l~ 105 (369)
T PRK12349 87 LPKETHPMDGLRTGVSALA 105 (369)
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 2235677777877777773
No 70
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.93 E-value=0.0054 Score=69.76 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAAL 437 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~ 437 (806)
..|+|++++-.++++...+|.+...|-....++.+|+. ...-.+.+.++-+.+||++++|++.+= |++.+ ..+++.+
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~-a~~e~~~~aL~~ll~Dp~VdaVlv~i~-ggi~~~~~vA~~I 332 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGG-ASPERVAKAFRLVLSDRNVKAILVNIF-AGINRCDWVAEGV 332 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCC-CCHHHHHHHHHHHHcCCCCCEEEEEcC-CCCCCHHHHHHHH
Confidence 46999999999999999999999999888899999876 245667899999999999999998664 66665 5555555
Q ss_pred Hhc----CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC--cccCChhhHHHHH
Q psy16953 438 KDK----RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA--HVPSSFDTLGDII 503 (806)
Q Consensus 438 r~~----~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv--i~v~~~~EL~~~~ 503 (806)
.++ ..+|||++.-.|.... .....|+++|+ ...+|++|-...+
T Consensus 333 i~a~~~~~~~kPvvv~l~G~~~e-----------------------~~~~iL~~~Gipvf~~~~~~~a~~~~ 381 (392)
T PRK14046 333 VQAAREVGIDVPLVVRLAGTNVE-----------------------EGRKILAESGLPIITADTLAEAAEKA 381 (392)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHH-----------------------HHHHHHHHcCCCeeecCCHHHHHHHH
Confidence 443 2579997765442221 15667889995 5555555544433
No 71
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=96.90 E-value=0.0055 Score=68.92 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=66.2
Q ss_pred ccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
....|.|+...++ .+.|||+++.|+.+ +.+|.++.+++|+|+.|++.+.+.++..| .+|+.-++......-.-.
T Consensus 7 ~v~~s~is~id~~~g~l~YRG~~i~dL~~-~~~feeva~LL~~G~lP~~~el~~f~~~L---~~~~~~p~~v~~~~~~~p 82 (358)
T cd06118 7 KAKETSISYIDGDEGILRYRGYDIEELAE-KSSFEEVAYLLLYGKLPTKEELAEFKKKL---ASHRALPEHVVEILDLLP 82 (358)
T ss_pred eeeeeeeeEEeCCCCeEEECCccHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHH---HHccCCCHHHHHHHHhcC
Confidence 3445666665444 69999999988886 68999999999999999998888899888 678876655222211112
Q ss_pred cCCChHHHHHHhhcccc
Q psy16953 622 AGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 622 a~adl~~avaagl~alG 638 (806)
...++...+.+++++++
T Consensus 83 ~~~~pm~~l~~~~~~l~ 99 (358)
T cd06118 83 KNAHPMDVLRTAVSALG 99 (358)
T ss_pred CCCChHHHHHHHHHhhh
Confidence 35677777777777773
No 72
>PRK14036 citrate synthase; Provisional
Probab=96.75 E-value=0.0046 Score=69.87 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=70.4
Q ss_pred hcccccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCccc
Q psy16953 536 ELGLIRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGA 613 (806)
Q Consensus 536 ~~g~~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~ 613 (806)
.-| ++.-...+|.|+...++ .+.||||+|.|+++ +.+|.+++++||+|+.|++.+.+.++..|. +|..-+...
T Consensus 5 ~~G-l~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~-~~~Feev~~LLl~G~lP~~~el~~f~~~L~---~~~~lp~~v 79 (377)
T PRK14036 5 RPG-LEGVPATQSSISYVDGQKGILEYRGYPIEELAE-KSSFLETAYLLIWGELPTAEELEEFEQEVR---MHRRVKYRI 79 (377)
T ss_pred CCc-cCCCeeeeeeceEEECCCCEEEECCccHHHHHc-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHHH
Confidence 345 45666778888887654 47899999988886 689999999999999999999999999984 343333221
Q ss_pred ceeeeeeccCCChHHHHHHhhcccc
Q psy16953 614 HNTIVCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 614 ~aarv~aSa~adl~~avaagl~alG 638 (806)
....-......++...+.+++++++
T Consensus 80 ~~~i~~~p~~~hpm~~L~~~vs~l~ 104 (377)
T PRK14036 80 RDMMKCFPETGHPMDALQASAAALG 104 (377)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 2221112224677888888888774
No 73
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.61 E-value=0.0011 Score=69.71 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=52.9
Q ss_pred ccccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCc-cccccCccCceeecC-CHHHH
Q psy16953 3 AKAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQ-LIKRRGKLGLIKVNT-DFKGA 80 (806)
Q Consensus 3 ~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~-l~~~RGK~Glv~l~~-~~~e~ 80 (806)
+..+.|+++|+||..|+. +++ +..+ ++|++|+..++.|++ .|+|+|... -+--+-..|+|.||- |.+++
T Consensus 7 ~~~L~e~e~~~lL~~yGI--~~~-~~~~-----~~~~~ea~~~a~~ig-~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 7 RGWLTEAEAKELLAAYGI--PVP-PTRL-----VTSAEEAVAAAEEIG-FPVVLKIVSPDIAHKSDVGGVRLNLNSPEEV 77 (222)
T ss_dssp --EE-HHHHHHHHHTTT---------EE-----ESSHHHHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHHH
T ss_pred CCccCHHHHHHHHHHcCc--CCC-CeeE-----eCCHHHHHHHHHHhC-CCEEEEEecCCCCcCCCCCcEEECCCCHHHH
Confidence 356889999999999999 887 7777 899999999999998 799999862 133467889999987 67777
Q ss_pred HHHHHHHc
Q psy16953 81 QSWISERM 88 (806)
Q Consensus 81 ~~~~~~~~ 88 (806)
++..+++.
T Consensus 78 ~~a~~~l~ 85 (222)
T PF13549_consen 78 REAFERLR 85 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 74
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.55 E-value=0.0047 Score=58.85 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred eEEEEccChhH----HHhhhh-cccccccCCCcccceeEeec-CCCcccc--cccceeecccccccHHHHhccCCCeeEE
Q psy16953 204 KAIVWGMQTRA----VQSMLD-FDFVCRRSEPSVAAMVYPFT-GDHKLKF--YWGHKEVLIPVYKKMEDAMSKNKDADVL 275 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~-~gf~~~~~~~~~~g~iypvn-p~~~~~~--~~g~~~i~~p~y~sv~daip~~~Dlavi 275 (806)
||+|+|.++|. .+.+.+ .++ .+.|.+-.-+ +..++.+ .-|....++++|.+++++ -+.+|+.|-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-------~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~-~~~~DVvID 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-------ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEEL-LEEADVVID 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-------EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHH-TTH-SEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHh-cccCCEEEE
Confidence 78999998875 333333 333 2233333322 1111111 112234568999999995 544876555
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
|. -++.+.+.++.|.+.|++ +|+-|.||.++..++|.+++++.+ -++-||
T Consensus 74 --fT-~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~l~~~a~~~~-vl~a~N 123 (124)
T PF01113_consen 74 --FT-NPDAVYDNLEYALKHGVP-LVIGTTGFSDEQIDELEELAKKIP-VLIAPN 123 (124)
T ss_dssp --ES--HHHHHHHHHHHHHHT-E-EEEE-SSSHHHHHHHHHHHTTTSE-EEE-SS
T ss_pred --cC-ChHHhHHHHHHHHhCCCC-EEEECCCCCHHHHHHHHHHhccCC-EEEeCC
Confidence 55 556788889999888887 667799999888899999887722 445555
No 75
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.55 E-value=0.024 Score=65.02 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=93.6
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----V 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----f 433 (806)
..|+|+.+.--++++.+.+|.+...|--...|..+|+.. ..-.+...++-+..||++|+|++-+ .||+.. .. +
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNI-fGGI~~cd~iA~gi 367 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNI-FGGIMKCDVIASGI 367 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEe-cCCccchHHHHHHH
Confidence 459999999999999999999999999999999999983 4456778889999999999999966 578876 33 5
Q ss_pred HHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--CcccCChhhHHH
Q psy16953 434 CAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--AHVPSSFDTLGD 501 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--vi~v~~~~EL~~ 501 (806)
.+++++...++|||+=-.|+... .=...|+++| ++.++|++|-..
T Consensus 368 i~a~~~~~~~~pivvRl~Gtn~~-----------------------~g~~~l~~~~~~~~~~~~l~~A~~ 414 (422)
T PLN00124 368 VNAAKQVGLKVPLVVRLEGTNVD-----------------------QGKRILKESGMTLITAEDLDDAAE 414 (422)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHH-----------------------HHHHHHHhCCCCeEEcCCHHHHHH
Confidence 55666666789999977777664 1456888999 556666665443
No 76
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.52 E-value=0.014 Score=62.89 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=56.2
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe-EEccCc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS-IIGPAT 331 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir-iiGPN~ 331 (806)
++++|.++++ +...+|++|. |. ++....+.++.|.+.|++ +|+-+.|+.+++.++|.++|+++|+. +++||.
T Consensus 55 gv~~~~d~~~-l~~~~DvVId--fT-~p~~~~~~~~~al~~g~~-vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 55 GVPVTDDLEA-VETDPDVLID--FT-TPEGVLNHLKFALEHGVR-LVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred CceeeCCHHH-hcCCCCEEEE--CC-ChHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 5889999999 6555776555 55 666777788888879976 66667799999999999999998874 467884
No 77
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.46 E-value=0.033 Score=62.17 Aligned_cols=121 Identities=22% Similarity=0.305 Sum_probs=99.5
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----V 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----f 433 (806)
..|+|+.+.-.++++.+.+|.+...|---..|..+|+..-.+ .+...++.+..||.+|+|.+-+ .||+-. .. .
T Consensus 254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e-~v~~a~~~il~d~~vk~IfVNI-fGGI~rcD~vA~GI 331 (387)
T COG0045 254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAE-RVKEAFKLILSDPNVKAIFVNI-FGGITRCDEVAEGI 331 (387)
T ss_pred ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHH-HHHHHHHHHhcCCCccEEEEEE-ccCcCccHHHHHHH
Confidence 359999999999999999999999999999999999985333 3888999999999999999988 788876 33 5
Q ss_pred HHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--CcccCChhhHHHHHH
Q psy16953 434 CAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--AHVPSSFDTLGDIIG 504 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--vi~v~~~~EL~~~~~ 504 (806)
.+++++...++|+|+=-.|++.. . =...++++| +..+++++|....+-
T Consensus 332 i~Al~e~~~~vPlVVRL~GtN~e-------------------~----Gk~iL~esg~~i~~~~~l~~aa~k~v 381 (387)
T COG0045 332 IAALKEVGVNVPLVVRLEGTNVE-------------------E----GKRILAESGLNIIAADDLDEAAEKAV 381 (387)
T ss_pred HHHHHhcCCCCCEEEEcCCCCHH-------------------H----HHHHHHHcCCceEecccHHHHHHHHH
Confidence 56677767889999988888775 1 456899999 788888877665543
No 78
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=96.44 E-value=0.011 Score=66.82 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=51.9
Q ss_pred cccccceeccccccccc--cccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhc
Q psy16953 541 RKPASFMTSICDERGQE--LLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVT 603 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~~--i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ 603 (806)
+--...+|.|+...+++ +.|||||+.|+++ +.+|.+++++||+|+.|++.+.+.++..|.-+
T Consensus 4 ~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~-~~~feeva~LL~~G~lP~~~e~~~f~~~l~~~ 67 (368)
T TIGR01800 4 EGVIADETALSTIDGSEGILTYRGYDIEDLAE-HASFEEVAYLLLHGKLPTRSELRKFKTELAKL 67 (368)
T ss_pred CCCeeeeeeceEEECCcceEEECCeeHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 34455678888887777 8999999998886 68999999999999999999989999887543
No 79
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=96.44 E-value=0.013 Score=66.28 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=68.3
Q ss_pred ccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-...+|.|+...++ .+.||||+|.|+.+ +.+|.++++++|+|+.|++.+.+.++..|.-. ..-+.......
T Consensus 5 l~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~-~~~Feev~~LLl~G~lP~~~el~~~~~~L~~~---~~lp~~v~~~i 80 (373)
T cd06112 5 LAGVPAAESSISYIDGKNGILEYRGYDIEELAE-YSSFEEVALLLLDGDLPTAAELEEFDKELRQH---RRVKYNIRDMM 80 (373)
T ss_pred cCCCeeeeeeceEEeCCCCEEEECCccHHHHhc-CCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHHHHHHH
Confidence 34445667888877654 47899999988886 68999999999999999999999999999544 22222212221
Q ss_pred eeeccCCChHHHHHHhhccccc
Q psy16953 618 VCARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG~ 639 (806)
-.....+++...+.+++.+++.
T Consensus 81 ~~~p~~~hpm~~L~~~vs~l~~ 102 (373)
T cd06112 81 KCFPETGHPMDMLQATVAALGM 102 (373)
T ss_pred HhCCCCCCHHHHHHHHHHhhhc
Confidence 1222336788888888888853
No 80
>PRK14032 citrate synthase; Provisional
Probab=96.43 E-value=0.012 Score=67.82 Aligned_cols=92 Identities=24% Similarity=0.265 Sum_probs=66.8
Q ss_pred ccceeccccccc------------cccccCCCCccccccCCC------CHHHHHHHHHhcCCCChHHHHHHHHHhhhccC
Q psy16953 544 ASFMTSICDERG------------QELLYAGMPISDVLKQNM------GIGGVLSLLWFQRQLPPYVCKFLEMSLMVTAD 605 (806)
Q Consensus 544 ~~~~t~i~d~~~------------~~i~~~G~~i~~~i~~~~------s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~AD 605 (806)
..-.|+|++..+ ..+.||||+|.|+.+ +. +|.+++++||+|+.|+..+.+.|+..|.-+.+
T Consensus 42 ~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dLa~-~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~ 120 (447)
T PRK14032 42 LVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDLVN-GFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRE 120 (447)
T ss_pred EEeeeEEeeeeceeecCCcccCCCCceeECCccHHHHHh-hcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 345666666544 348999999998886 44 89999999999999999999999999955544
Q ss_pred CCCCCcccceeeeeecc-CCChHHHHHHhhcccccc
Q psy16953 606 HGPAVSGAHNTIVCARA-GKDLVSSLVSGLLTIGDR 640 (806)
Q Consensus 606 Hg~~~St~~aarv~aSa-~adl~~avaagl~alG~~ 640 (806)
-+.. +...+..+. ..++-..+.++++++|..
T Consensus 121 ---lp~~-~v~~~i~~~p~~hPM~~L~a~vsaL~~~ 152 (447)
T PRK14032 121 ---LPDG-FTRDMILKAPSKDIMNSLARSVLALYSY 152 (447)
T ss_pred ---CCHH-HHHHHHHhCCCcCHHHHHHHHHHhhhhc
Confidence 2222 222222222 358999999999999643
No 81
>PRK14037 citrate synthase; Provisional
Probab=96.41 E-value=0.014 Score=66.08 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=65.4
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-...+|.|+.-.+ ..+.||||+|.|+.+ +.+|.++++++|+|+.|++.+.+.|+..|.-+.. +.... ....
T Consensus 8 L~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~-~~~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~--lp~~v-~~~~ 83 (377)
T PRK14037 8 LENVIIKVTNLTFIDGEKGILRYRGYNIEDLVN-YGSYEETIYLMLYGELPTKKELNDLKEKLNEEYE--VPQEV-IDSI 83 (377)
T ss_pred CCCCeeeeeeceEEeCCCCEEEECCccHHHHHc-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCHHH-HHHH
Confidence 3444556677776653 358899999988886 6899999999999999999999999999854321 22221 2211
Q ss_pred eeeccCCChHHHHHHhhcccc
Q psy16953 618 VCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG 638 (806)
-..-...++...+.+++++++
T Consensus 84 ~~~p~~~hpm~~l~~~vs~l~ 104 (377)
T PRK14037 84 YLMPRDSDAIGLMEAAFAALA 104 (377)
T ss_pred HhCCccCCcHHHHHHHHHhhh
Confidence 111123577777887777775
No 82
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=96.23 E-value=0.025 Score=63.36 Aligned_cols=107 Identities=20% Similarity=0.153 Sum_probs=71.5
Q ss_pred ccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeee
Q psy16953 542 KPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVC 619 (806)
Q Consensus 542 ~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~ 619 (806)
--...+|.|+...+ ..+.||||+|.|+.. +.+|-++.++||+|+.|++.+.+-+..-|.-... +.... ....-.
T Consensus 5 gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~-~~~feev~~LLl~G~lP~~~el~~f~~~l~~~~~--lp~~v-~~~~~~ 80 (349)
T cd06109 5 GVVAAETVLSDVDGEAGRLIIRGYSVEDLAG-SASFEDVAALLWNGFFPDLPELEEFRAALAAARA--LPDVV-AALLPA 80 (349)
T ss_pred CceeeeeeceeEeCCCCeEEECCccHHHHHh-hCCHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--CCHHH-HHHHHh
Confidence 34556778887765 358999999999886 6899999999999999998888888777754321 11111 111111
Q ss_pred eccCCChHHHHHHhhcccccccCChHHHHHHHHHHH
Q psy16953 620 ARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAA 655 (806)
Q Consensus 620 aSa~adl~~avaagl~alG~~hGGA~~~a~~~l~e~ 655 (806)
- ...++...+.+++.+++.. ...+.+.+++..+
T Consensus 81 ~-~~~~pm~~l~~~~s~~~~~--~~~~~a~~liA~~ 113 (349)
T cd06109 81 L-AGLDPMDALRALLALLPDS--PDLATALRLLAAA 113 (349)
T ss_pred C-CCcCHHHHHHHHHHhcCch--hHHHHHHHHHHHH
Confidence 1 4567888888888887543 1245555555543
No 83
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=96.22 E-value=0.02 Score=64.41 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=63.0
Q ss_pred ccccceeccccccccc--cccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeee
Q psy16953 542 KPASFMTSICDERGQE--LLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVC 619 (806)
Q Consensus 542 ~~~~~~t~i~d~~~~~--i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~ 619 (806)
--...+|.|+...+++ +.|||+|+.|+++ +.+|.++++++|+|+.|++.+.+.++..|. .|..-+.......-.
T Consensus 5 g~~~~~T~IS~id~~~g~L~yRG~di~dL~~-~~~feeva~LL~~G~lP~~~e~~~f~~~l~---~~~~~p~~v~~~~~~ 80 (356)
T cd06110 5 GVIAADSKISYIDGDAGILIYRGYDIHDLAE-NSTFEEVAYLLWNGELPTAEELDAFKAQLA---AERELPAEIIDLLKL 80 (356)
T ss_pred CCeeeeeeceEEECCCCeEEECCeeHHHHHh-cCCHHHHHHHHHcCcCCCHHHHHHHHHhhh---hccCCCHHHHHHHHh
Confidence 3455577887777765 6899999998886 689999999999999999999999999883 333333321111111
Q ss_pred eccCCChHHHHHHhhccc
Q psy16953 620 ARAGKDLVSSLVSGLLTI 637 (806)
Q Consensus 620 aSa~adl~~avaagl~al 637 (806)
-...+++...+.++++++
T Consensus 81 ~p~~~~pm~~l~~~v~~l 98 (356)
T cd06110 81 LPKDAHPMDVLRTAVSAL 98 (356)
T ss_pred CCCCCCchHHHHHHHHhh
Confidence 112456666666666665
No 84
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=96.20 E-value=0.026 Score=63.52 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=67.9
Q ss_pred ccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
.--+|+|++..++ .+.||||+|.|+.. +.+|-++.++||+|+.|++++.+-++..|.-+ ..-+-.+....-...
T Consensus 7 ~~~~t~is~id~~~g~L~yRGy~i~dLa~-~~sfeeva~LLl~G~lPt~~el~~f~~~L~~~---~~lp~~v~~~i~~~p 82 (363)
T cd06108 7 VAGQTAISTVGKGGKGLTYRGYDIEDLAE-NATFEEVAYLLLYGKLPTRKQLDAYKTKLVAL---RRLPAALKTVLELIP 82 (363)
T ss_pred eeeeeeCceEeCCCCEEEECCccHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHHHHHHHHhCC
Confidence 4456777776554 58999999999886 67999999999999999998888888777432 221111111111112
Q ss_pred cCCChHHHHHHhhccccccc-----CChHHHHHHHHHHH
Q psy16953 622 AGKDLVSSLVSGLLTIGDRF-----GGALNDAAIQFSAA 655 (806)
Q Consensus 622 a~adl~~avaagl~alG~~h-----GGA~~~a~~~l~e~ 655 (806)
..+++...+.+++++++-.. -...+.+.+++..+
T Consensus 83 ~~~hpm~~L~~~vs~l~~~d~~~~~~~~~~~a~rlia~~ 121 (363)
T cd06108 83 KDSHPMDVMRTGCSMLGCLEPENEFSQQYEIAIRLLAIF 121 (363)
T ss_pred CCCChHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 23567777777777663211 12234556665544
No 85
>PRK06091 membrane protein FdrA; Validated
Probab=96.18 E-value=4.1 Score=48.32 Aligned_cols=345 Identities=16% Similarity=0.148 Sum_probs=181.7
Q ss_pred ceeecCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHH
Q psy16953 70 LIKVNTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIR 149 (806)
Q Consensus 70 lv~l~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~ 149 (806)
.+..-++|+++.+.+.+. ++=++.+- ...|++ -+.+|++. ...++|=-.|... +-.+.|+
T Consensus 101 ~~~~~~t~~~a~~~lpe~---DLAvIsVP-----a~~v~~---al~ea~~~--------G~~viI~S~gfg~-~~E~~L~ 160 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDA---NLALISVA-----GEYAAE---LAEQALDR--------NLNVMMFSDNVTL-EDEIRLK 160 (555)
T ss_pred CCcccccHHHHHhcCCCC---CEEEEecC-----HHHHHH---HHHHHHHc--------CCeEEEEcCCCCH-HHHHHHH
Confidence 344566888877665542 44333322 333332 13334433 2345555566643 3334455
Q ss_pred HhcccCCccEEEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChhHHHhhhhcccccccCC
Q psy16953 150 EVGKTLGIPLFVFGPETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSE 229 (806)
Q Consensus 150 ~~g~~~g~~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~ 229 (806)
+..++.| +.+.||+. .+..+ .. -..+|. +.+ +.-+|.+++.|+...+.++...- +.+
T Consensus 161 e~Ar~~G--lrvmGPNC-G~~~i------~g---------l~lsF~-~~~-~~G~IgiVSQSGtl~~~v~~~a~---~~G 217 (555)
T PRK06091 161 TRAREKG--LLVMGPDC-GTAMI------AG---------TPLAFA-NVM-PEGNIGVIGASGTGIQELCSQIA---LAG 217 (555)
T ss_pred HHHHHcC--CEEECCCC-hhhhh------cC---------Cccccc-CCC-CCCCEEEEeCcHHHHHHHHHHHH---HcC
Confidence 5545555 56788866 22111 00 112221 222 35579999999986554443210 000
Q ss_pred CcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeEEEeec-CChhhH-HHHHHHhcCCCCCEEEEEcCC
Q psy16953 230 PSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADVLVNFA-SLRSAY-DSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 230 ~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlavivi~~-~~~~~~-~~~le~~~~~gvk~~viis~G 306 (806)
.|--+-|+-+.. -+ .+++ ++-.-.-++- +.+.|+.-+|+++. +|++.+ ..+++++.+.+-+-+++.++.
T Consensus 218 ---iG~S~~Vs~Gn~-Dl---s~~~ggi~~~D~L~~-L~~DP~TkvIvly~kppaE~v~~~fl~aar~~~KPVVvlk~Gr 289 (555)
T PRK06091 218 ---EGITHAIGLGGR-DL---SAEVGGISALTALEM-LSADEKSEVIAFVSKPPAEAVRLKIINAMKATGKPVVALFLGY 289 (555)
T ss_pred ---CCeEEEEECCCC-cc---ccccCCCCHHHHHHH-HhhCCCCcEEEEEEecCchHHHHHHHHHHhhCCCCEEEEEecC
Confidence 233333332210 00 0123 2333333333 66677777766655 333333 467777666666655555543
Q ss_pred CCH----------HHHHHHHHHHHHcC-CeEEccCccccccCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHH
Q psy16953 307 IPE----------NMTRKLNLLAKEKG-VSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375 (806)
Q Consensus 307 f~E----------~~~~~l~~~a~~~g-iriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~ 375 (806)
.+. ...+++.+.|.... ......+ +- .+..+.|==.--.|+++++
T Consensus 290 s~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~---~~---------------------~~~~~~irGly~GGTL~~E 345 (555)
T PRK06091 290 TPAVARDENVWFASTLDEAARLACLLSRVTAQRNA---IL---------------------PVSQGFICGLYTGGTLAAE 345 (555)
T ss_pred CchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc---cc---------------------cccCCeeEEEecCchHHHH
Confidence 332 23455555554322 1111110 00 1222233333447999999
Q ss_pred HHHHHHhcCCcee----------------EEEeecCCCC------CCCCH---HHHHHHhhcCCCccEEEEEEc--cCCc
Q psy16953 376 LNNIISKATNGVY----------------EGVAIGGDRY------PGTTF---MDHILRYQADPEVKMIVLLGE--VGGV 428 (806)
Q Consensus 376 l~~~~~~~g~G~s----------------~~vs~Gn~~~------~d~~~---~D~l~~l~~Dp~Tk~I~ly~E--igg~ 428 (806)
.. .+.+...++. .+|..|-|.| +-+|. .+.|.-..+||+|.+|++=.. .|+.
T Consensus 346 a~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~VillD~vlGyGah 424 (555)
T PRK06091 346 AA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGAT 424 (555)
T ss_pred HH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEEEeeeccCCC
Confidence 88 6655554433 4666666522 23333 355666678999999998655 4566
Q ss_pred ch--HHHHHHHHhcC------CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHH
Q psy16953 429 EE--YEVCAALKDKR------ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLG 500 (806)
Q Consensus 429 ~d--~~f~~a~r~~~------~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~ 500 (806)
.| ..++.++++++ +.-+||+...|+-.. .+ .-..-.+.|+++|+++++|-.+..
T Consensus 425 ~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D--pQ----------------~~~~q~~~L~~aGv~v~~sn~~a~ 486 (555)
T PRK06091 425 ADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD--PQ----------------CRSQQIATLEDAGIAVVDSLPEAT 486 (555)
T ss_pred CChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC--Cc----------------CHHHHHHHHHhCCeEEEcCcHHHH
Confidence 66 56777766642 446777788887665 11 112256799999999999999988
Q ss_pred HHHHHHHH
Q psy16953 501 DIIGSVYK 508 (806)
Q Consensus 501 ~~~~all~ 508 (806)
..+..+..
T Consensus 487 ~~a~~~~~ 494 (555)
T PRK06091 487 LLAAALIR 494 (555)
T ss_pred HHHHHHhh
Confidence 88877664
No 86
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.10 E-value=0.0071 Score=62.16 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=53.4
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCe-EEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKL-VAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~-VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
-+|+++.+|.+ |.. +.+. .+|.++|.+.-.-.. .++ |||||=|..++| |.+..|.+||.+++++++
T Consensus 5 faK~fm~~~~I--PTa-~~~~-----f~~~~~A~~~l~~~~-~p~~ViKadGla~GKG----V~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 5 FAKEFMKRYGI--PTA-KYKV-----FTDYEEALEYLEEQG-YPYVVIKADGLAAGKG----VVIADDREEALEALREIF 71 (194)
T ss_dssp HHHHHHHHTT---SB---EEE-----ESSHHHHHHHHHHHS-SSEEEEEESSSCTTTS----EEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCC-CeeE-----ECCHHHHHHHHHhcC-CCceEEccCCCCCCCE----EEEeCCHHHHHHHHHHhc
Confidence 48999999988 665 5555 789999988555555 355 999999998865 999999999999999998
Q ss_pred C
Q psy16953 89 G 89 (806)
Q Consensus 89 g 89 (806)
.
T Consensus 72 ~ 72 (194)
T PF01071_consen 72 V 72 (194)
T ss_dssp T
T ss_pred c
Confidence 6
No 87
>PRK12351 methylcitrate synthase; Provisional
Probab=96.03 E-value=0.033 Score=63.06 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=67.1
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
.--..-.|.||+..++ .+.||||+|.|+.. +.+|-++.++||+|+.|+..+.+-++.-|.- |..-+-......-
T Consensus 13 ~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~-~~~feeva~LL~~G~LP~~~el~~f~~~L~~---~~~lp~~v~~~i~ 88 (378)
T PRK12351 13 SGVVAGNTALCTVGKSGNDLHYRGYDILDLAE-HCEFEEVAHLLVHGKLPTQAELAAYKTKLKA---LRGLPAAVKTVLE 88 (378)
T ss_pred CCeeeccccCeeEecCCCEEEECCccHHHHHh-cCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3445567888887654 58999999999886 6799999999999999999888888888743 3332222121111
Q ss_pred eeccCCChHHHHHHhhccccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG~ 639 (806)
.....+++...+.+++++++.
T Consensus 89 ~~p~~~hPM~~L~~~vs~l~~ 109 (378)
T PRK12351 89 AIPAAAHPMDVMRTGVSVLGC 109 (378)
T ss_pred hCCccCCHHHHHHHHHHhhcc
Confidence 122246788888888888853
No 88
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=96.02 E-value=0.025 Score=63.66 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=61.1
Q ss_pred ccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
.--+|.|+...++ .+.|||||+.|+.+ +.+|.++++++|+|+.|++.+.+.++.-| .+|+.-+.......-.-.
T Consensus 7 ~~~~s~Is~i~~~~g~L~yRG~di~dLa~-~~~feeva~LL~~G~lP~~~e~~~f~~~l---~~~~~lp~~~~~~~~~~p 82 (362)
T cd06111 7 VADTTAISKVMPETNSLTYRGYPVQDLAE-NCSFEEVAYLLWNGELPNAAQLAEFSQRE---RSYRRLDRNLLSLIASLP 82 (362)
T ss_pred eEecccceEEECCCCeEEECCccHHHHHc-cCCHHHHHHHHHCCCCCCHHHHHHHHHHH---HHccCCCHHHHHHHHhCC
Confidence 3345667666553 67999999988886 68999999999999999998888888877 344433333111111111
Q ss_pred cCCChHHHHHHhhcccc
Q psy16953 622 AGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 622 a~adl~~avaagl~alG 638 (806)
..+++...+.+++.+++
T Consensus 83 ~~~~pm~~l~~~vs~l~ 99 (362)
T cd06111 83 KNCHPMDVLRTAVSVLG 99 (362)
T ss_pred CCCChHHHHHHHHHHhh
Confidence 23566666777766663
No 89
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=96.01 E-value=0.0049 Score=70.31 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=59.4
Q ss_pred ccccCCCCccccccC-----CCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeecc-CCChHHHH
Q psy16953 557 ELLYAGMPISDVLKQ-----NMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARA-GKDLVSSL 630 (806)
Q Consensus 557 ~i~~~G~~i~~~i~~-----~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa-~adl~~av 630 (806)
.+.||||+|.|+... +.+|.+++++||+|+.|++++.+.|+..|.-+ ..-++. +...+..+. ..++-..+
T Consensus 37 ~L~yRGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~-~~~~~i~~~p~~hpM~~L 112 (406)
T cd06113 37 KLYYRGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILSSY---RTLPDN-FVEDVILKAPSKDIMNKL 112 (406)
T ss_pred eeeECCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH-HHHHHHHhCCCcCHHHHH
Confidence 589999999988852 13899999999999999999999999999443 333332 222122332 25888999
Q ss_pred HHhhccccccc
Q psy16953 631 VSGLLTIGDRF 641 (806)
Q Consensus 631 aagl~alG~~h 641 (806)
.++++++|...
T Consensus 113 ~a~v~~l~~~~ 123 (406)
T cd06113 113 QRSVLALYSYD 123 (406)
T ss_pred HHHHHhccccC
Confidence 99999886544
No 90
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=95.87 E-value=0.043 Score=62.72 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=66.4
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
+.-..-+|.|+...++ .+.||||+|.|+.. +.+|-++.++||+|+-|++.+.+-|+.-|. .|..-+.......-
T Consensus 30 ~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~-~~~feEv~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~v~~~i~ 105 (410)
T cd06115 30 LNTAVVRSKISYIDGDKGILRYRGYPIEELAE-KSTFLEVAYLLIYGNLPTKSQLSDWEFAVS---QHTAVPTGVLDMIK 105 (410)
T ss_pred CCceEEEeeCeeEeCCCCeEEECCccHHHHHh-cCCHHHHHHHHHcCCCcCHHHHHHHHHHHH---HccCCCHHHHHHHH
Confidence 4445667788777665 47899999999886 579999999999999999988888888884 33333333122211
Q ss_pred eeccCCChHHHHHHhhcccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG 638 (806)
.....+++...+.+++++++
T Consensus 106 ~~p~~~hPM~~L~~~vs~l~ 125 (410)
T cd06115 106 SFPHDAHPMGMLVSAISALS 125 (410)
T ss_pred hCCCCCCHHHHHHHHHHHHh
Confidence 22234678888887777774
No 91
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=95.78 E-value=0.045 Score=62.10 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=66.7
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
..-..-+|+|+...++ .+.||||+|.|+.. +.+|-|+.++||+|+-|+.++.+.|..-|. .|..-+-......-
T Consensus 10 ~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~-~~~feEv~yLLl~G~lPt~~el~~f~~~L~---~~~~lp~~v~~~l~ 85 (384)
T cd06116 10 LNTASCKSAITYIDGEKGILRYRGYPIEQLAE-QSSYLEVAYLLLHGELPTKERLAQWVYDIT---RHTMTHENLKKFMD 85 (384)
T ss_pred CCeeEEeeEeeeEeCCCCeEEECCccHHHHhc-cCCHHHHHHHHHCCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHH
Confidence 4446667888887665 47899999999886 679999999999999999988888888773 44433332122211
Q ss_pred eeccCCChHHHHHHhhcccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG 638 (806)
.-.-.+++...+.+++.+++
T Consensus 86 ~~p~~~hPM~~L~~~vs~l~ 105 (384)
T cd06116 86 GFRYDAHPMGILISSVAALS 105 (384)
T ss_pred hcCcCCCcHHHHHHHHHhhh
Confidence 11234677788888888774
No 92
>PRK14035 citrate synthase; Provisional
Probab=95.75 E-value=0.036 Score=62.62 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=64.8
Q ss_pred ccccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeee-
Q psy16953 542 KPASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCA- 620 (806)
Q Consensus 542 ~~~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~a- 620 (806)
.-..-+|+|++..++.+.||||+|.|+.. +-+|-++.++||+|+.|++.+.+-+..-|.- |..-+-..... +..
T Consensus 9 ~v~~~~s~Is~id~~~L~YRGy~i~dLa~-~~~Feeva~LLl~G~lP~~~el~~f~~~L~~---~~~lp~~v~~~-i~~~ 83 (371)
T PRK14035 9 GVIAAETKISSIIDSQLTYAGYDIDDLAE-NASFEEVIFLLWNYRLPTEEELAHLKGKLRK---YMTLNDRVYQH-FEEY 83 (371)
T ss_pred CceEeeeeeeEecCCEeEECCccHHHHHh-cCCHHHHHHHHHCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHH-HHhc
Confidence 34556788888888889999999999886 5799999999999999999888888877753 22222221111 111
Q ss_pred -ccCCChHHHHHHhhcccc
Q psy16953 621 -RAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 621 -Sa~adl~~avaagl~alG 638 (806)
...+++-..+.+++.+++
T Consensus 84 ~~~~~hpm~~l~~~vs~l~ 102 (371)
T PRK14035 84 STDHVHPMTALRTSVSYLA 102 (371)
T ss_pred CCcCCCHHHHHHHHHHHHh
Confidence 123667777777777764
No 93
>PRK14033 citrate synthase; Provisional
Probab=95.74 E-value=0.041 Score=62.26 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
+--.-..|.|+...++ .+.|||+++.|+.+ +.+|.++++++|+|+.|++.+.+.++..|. .|..-+.......-
T Consensus 14 ~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~-~~sfeeva~LL~~G~lP~~~el~~f~~~l~---~~~~~p~~v~~~~~ 89 (375)
T PRK14033 14 AGVVVDTTAISKVVPETNSLTYRGYPVQDLAA-RCSFEEVAYLLWNGELPTDAELALFSQRER---AYRRLDRSVLSLID 89 (375)
T ss_pred CCceEeeccCeEEECCCCeEEECCccHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHH
Confidence 4445567778777664 67999999988886 689999999999999999988888888763 22222222111111
Q ss_pred eeccCCChHHHHHHhhcccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG 638 (806)
..-...++...+.+++.+++
T Consensus 90 ~~p~~~~pm~~l~~~vs~l~ 109 (375)
T PRK14033 90 KLPTTCHPMDVVRTAVSYLG 109 (375)
T ss_pred hCCCCCCHHHHHHHHHHHhc
Confidence 11223566666666666663
No 94
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=95.60 E-value=0.065 Score=60.46 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=64.7
Q ss_pred ccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
..-.|.||+..++ .+.||||+|.|+.. +.+|-++.++||+|+.|++.+.+-+..-|.- |..-+.......-...
T Consensus 7 ~~~~T~is~v~~~~g~L~YRGy~i~dLa~-~~~FEeva~LL~~G~lPt~~el~~f~~~L~~---~~~lp~~v~~~i~~~p 82 (366)
T cd06117 7 AAGNTALCTVGRSGNDLHYRGYDILDLAE-KCEFEEVAHLLVHGKLPTKSELAAYKTKLKS---LRGLPANVKTALEQLP 82 (366)
T ss_pred eEecccCeeeecccCEEEECCccHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHhCC
Confidence 4456788877654 68999999999886 6899999999999999999888888888743 3332222122111222
Q ss_pred cCCChHHHHHHhhcccc
Q psy16953 622 AGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 622 a~adl~~avaagl~alG 638 (806)
..+++...+.+++++++
T Consensus 83 ~~~hpm~~l~~~vs~l~ 99 (366)
T cd06117 83 AAAHPMDVMRTGVSVLG 99 (366)
T ss_pred ccCCHHHHHHHHHhhhc
Confidence 34678888888888884
No 95
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=95.39 E-value=0.066 Score=61.24 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=66.1
Q ss_pred cccccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| +..-..-+|.|+...++ .+.||||+|.|+.. +-+|.+++++||+|+-|++++.+-|..-|.- |..-+....
T Consensus 34 ~G-L~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~-~~~feEv~yLLl~G~LPt~~el~~f~~~L~~---~~~lp~~v~ 108 (412)
T TIGR01798 34 PG-FTSTASCESKITFIDGDKGILLYRGYPIDQLAT-KSDYLEVCYLLLNGELPTAEQKDEFDDTVTR---HTMVHEQVT 108 (412)
T ss_pred CC-CCCceeEeeeCeeEeCCCCEEEECCccHHHHhc-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHHHH
Confidence 35 34445667788877665 47899999999886 5799999999999999999888888888843 332222212
Q ss_pred eeeeeeccCCChHHHHHHhhcccc
Q psy16953 615 NTIVCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 615 aarv~aSa~adl~~avaagl~alG 638 (806)
...-.---..++...+.+++++++
T Consensus 109 ~~i~~~p~~~hPM~~L~~~vs~l~ 132 (412)
T TIGR01798 109 RFFNGFRRDAHPMAVMVGVVGALS 132 (412)
T ss_pred HHHHhCCCcCChHHHHHHHHHHHh
Confidence 111111122577777877777774
No 96
>PRK09569 type I citrate synthase; Reviewed
Probab=95.33 E-value=0.098 Score=60.28 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=67.9
Q ss_pred cccccccccceeccccccccc-cccCCCCccccccCC--------CCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC
Q psy16953 537 LGLIRKPASFMTSICDERGQE-LLYAGMPISDVLKQN--------MGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG 607 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~~-i~~~G~~i~~~i~~~--------~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg 607 (806)
-| ++--...+|.|+...+++ +.||||+|.|+.... -+|-+++++||+|+-|++++.+.|..-|.- |.
T Consensus 40 ~G-L~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~---~~ 115 (437)
T PRK09569 40 GG-ARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKK---RQ 115 (437)
T ss_pred cc-ccCCeecceeceeecCCCceeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cC
Confidence 45 566667777787765543 889999999988631 289999999999999999888888888843 33
Q ss_pred CCCcccceeeeeeccCCChHHHHHHhhccc
Q psy16953 608 PAVSGAHNTIVCARAGKDLVSSLVSGLLTI 637 (806)
Q Consensus 608 ~~~St~~aarv~aSa~adl~~avaagl~al 637 (806)
.-+.......-.-...+++...+.++++++
T Consensus 116 ~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l 145 (437)
T PRK09569 116 NVPQYVIDAIRALPRDSHPMVMLSVGILAM 145 (437)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 323221322222233478888888888886
No 97
>PRK14034 citrate synthase; Provisional
Probab=95.25 E-value=0.086 Score=59.61 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=62.3
Q ss_pred ccceeccccccccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec-c
Q psy16953 544 ASFMTSICDERGQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR-A 622 (806)
Q Consensus 544 ~~~~t~i~d~~~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS-a 622 (806)
..-+|.|++..++.+.||||+|.|+.. +.+|-++.++||+|+.|++.+.+-+..-|.-+.. -+-......-.-. .
T Consensus 11 ~~~~s~is~i~~~~L~YRGy~i~dLa~-~~~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~---lp~~v~~~l~~~p~~ 86 (372)
T PRK14034 11 VATTSSVSSIIDDTLTYVGYNIDDLAE-NASFEEVVYLLWHRKLPNKQELAEFKEQLSENAK---VPGEIIEHLKQYDLK 86 (372)
T ss_pred eEeeeEeeccCCCeEEECCccHHHHhc-cCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcC---CCHHHHHHHHhCCCc
Confidence 445678887777789999999999886 6799999999999999998888777777754422 1211011100011 1
Q ss_pred CCChHHHHHHhhcccc
Q psy16953 623 GKDLVSSLVSGLLTIG 638 (806)
Q Consensus 623 ~adl~~avaagl~alG 638 (806)
.+++-..+.+++.++|
T Consensus 87 ~~hpm~~l~~~vs~l~ 102 (372)
T PRK14034 87 KVHPMSVLRTAISMLG 102 (372)
T ss_pred CcCHHHHHHHHHHhhc
Confidence 2577777777777774
No 98
>PLN02456 citrate synthase
Probab=95.20 E-value=0.067 Score=61.94 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=66.2
Q ss_pred ccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-...+|.|+...++ .+.||||+|+|+.. +.+|-+++++||+|+.|+.++.+-++.-|. +|..-+..+....
T Consensus 68 l~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~-~~~feevayLLl~G~LPt~~el~~f~~~L~---~~~~lp~~v~~~i 143 (455)
T PLN02456 68 YRNTAPVLSEISLIDGDEGILRFRGYPIEELAE-KSPFEEVAYLLLYGNLPTKEQLADWEAELR---QHSAVPEHVLDVI 143 (455)
T ss_pred cCCceeeeeeceEEeCCCCEEEECCccHHHHHh-cCCHHHHHHHHHcCcCCCHHHHHHHHHHHH---HhcCCCHHHHHHH
Confidence 34445567777776653 47899999999876 689999999999999999988888888773 4444333212111
Q ss_pred eeeccCCChHHHHHHhhcccc
Q psy16953 618 VCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG 638 (806)
-.-...+++-..+.+++++++
T Consensus 144 ~~~p~~~hPM~~L~~~vsal~ 164 (455)
T PLN02456 144 DALPHDAHPMTQLVSGVMALS 164 (455)
T ss_pred HhCCCcCCcHHHHHHHHHhhh
Confidence 112223677888888888874
No 99
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=95.08 E-value=0.12 Score=59.48 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=67.1
Q ss_pred ccccccceeccccccccc-cccCCCCccccccCCCC---------HHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCC
Q psy16953 540 IRKPASFMTSICDERGQE-LLYAGMPISDVLKQNMG---------IGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPA 609 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~~~-i~~~G~~i~~~i~~~~s---------~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~ 609 (806)
++...+..|.|+.-.+++ +.||||+|.|+.. +.+ |-+++++||+|.-|++.+.+-|+.-|.-+ +.-
T Consensus 40 l~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~-~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~---~~l 115 (427)
T cd06105 40 MRGIKGLVWETSVLDPEEGIRFRGLSIPECQK-LLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAAR---AAL 115 (427)
T ss_pred CCCceecceeceeEcCCCCeEECCccHHHHHh-hCcccccccccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCC
Confidence 566677777777766544 8899999999875 454 88999999999999998888888888543 222
Q ss_pred CcccceeeeeeccCCChHHHHHHhhcccc
Q psy16953 610 VSGAHNTIVCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 610 ~St~~aarv~aSa~adl~~avaagl~alG 638 (806)
+.......-......+|...+.+++++++
T Consensus 116 p~~v~~~i~~~p~~~hPM~~L~~~vsaL~ 144 (427)
T cd06105 116 PSHVVTMLDNFPTNLHPMSQLSAAITALN 144 (427)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Confidence 22212221122233688889999998884
No 100
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=95.08 E-value=0.11 Score=59.08 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=67.2
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
.--..-+|+|+...++ .+.||||+|.|+.. +-+|-++.++||+|+-|+..+.+.|..-|.-+ ..-+.......-
T Consensus 10 ~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~-~~~feev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~v~~~i~ 85 (382)
T cd06107 10 LNTAVCESSITYIDGDKGILLYRGYPIEQLAE-SSTYEEVAYLLLWGELPTQEQYDEFQRRLSEH---MMVPESVHRLIQ 85 (382)
T ss_pred CCeeeEeeeCeeEeCCCCeEEECCccHHHHHh-cCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---cCCCHHHHHHHH
Confidence 3445567788877665 47899999999886 57899999999999999998888888877544 332222122222
Q ss_pred eeccCCChHHHHHHhhccccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG~ 639 (806)
.-...+++...+.++++++|.
T Consensus 86 ~~p~~~hPM~~L~~~vs~l~~ 106 (382)
T cd06107 86 TFPRDAHPMGILCAGLSALSA 106 (382)
T ss_pred hCCCCCCcHHHHHHHHHhhcc
Confidence 222347888888888888854
No 101
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=95.02 E-value=0.22 Score=57.31 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=70.2
Q ss_pred hhcccccccccceecccccccc-ccccCCCCccccccCCC--------C-HHHHHHHHHhcCCCChHHHHHHHHHhhhcc
Q psy16953 535 RELGLIRKPASFMTSICDERGQ-ELLYAGMPISDVLKQNM--------G-IGGVLSLLWFQRQLPPYVCKFLEMSLMVTA 604 (806)
Q Consensus 535 ~~~g~~r~~~~~~t~i~d~~~~-~i~~~G~~i~~~i~~~~--------s-~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~A 604 (806)
+.-| ++--...+|.|+...++ .+.||||+|.|+.. +. + |-++.++||+|+-|++++.+-|...|.-
T Consensus 36 ~~~G-L~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~-~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~-- 111 (426)
T cd06103 36 VIGG-MRGMKGLVYETSVLDPDEGIRFRGKTIPECQE-LLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWAK-- 111 (426)
T ss_pred hccC-cCCCeeeeeeCeeEcCCCCeEECCccHHHHHh-hCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Confidence 4556 56667778888877654 37899999999886 33 3 8789999999999999888888888863
Q ss_pred CCCCCCcccceeeeeeccCCChHHHHHHhhccccc
Q psy16953 605 DHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 605 DHg~~~St~~aarv~aSa~adl~~avaagl~alG~ 639 (806)
|..-+-......-..-...++...+.+++++++.
T Consensus 112 -~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (426)
T cd06103 112 -RAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQS 145 (426)
T ss_pred -cCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccc
Confidence 3332222122211222336899999999999853
No 102
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.00 E-value=0.15 Score=54.76 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=51.6
Q ss_pred ecccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
.+++.|.++++++ ..+|+++. |+ ++....+.++.|.++|++.+ +-+.||.+++.++|.+.+++.+ .++-||.
T Consensus 46 ~~i~~~~dl~~ll-~~~DvVid--~t-~p~~~~~~~~~al~~G~~vv-igttG~s~~~~~~l~~aa~~~~-v~~s~n~ 117 (257)
T PRK00048 46 LGVAITDDLEAVL-ADADVLID--FT-TPEATLENLEFALEHGKPLV-IGTTGFTEEQLAELEEAAKKIP-VVIAPNF 117 (257)
T ss_pred CCccccCCHHHhc-cCCCEEEE--CC-CHHHHHHHHHHHHHcCCCEE-EECCCCCHHHHHHHHHHhcCCC-EEEECcc
Confidence 3578899999954 45776544 55 54556778888888998754 5588999999999999664444 5566664
No 103
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.049 Score=61.56 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=56.1
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
-+|+++++|.+ |-. .... .+|++++.+--...+ .++|||||=|.++-| |++..|.+||++.+.++|-
T Consensus 106 faK~fm~k~~I--Pta-~y~~-----f~~~e~a~ayi~~~g-~piVVKadGLaaGKG----V~V~~~~eeA~~a~~~~l~ 172 (428)
T COG0151 106 FAKDFMKKYGI--PTA-EYEV-----FTDPEEAKAYIDEKG-APIVVKADGLAAGKG----VIVAMTLEEAEAAVDEMLE 172 (428)
T ss_pred HHHHHHHHcCC--Ccc-cccc-----cCCHHHHHHHHHHcC-CCEEEecccccCCCC----eEEcCCHHHHHHHHHHHHh
Confidence 47999999988 522 3333 568888888777777 589999999998764 9999999999999999987
Q ss_pred Ce
Q psy16953 90 KD 91 (806)
Q Consensus 90 ~~ 91 (806)
.+
T Consensus 173 ~~ 174 (428)
T COG0151 173 GN 174 (428)
T ss_pred hc
Confidence 64
No 104
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.89 E-value=0.18 Score=53.96 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=73.9
Q ss_pred ceEEEEccChhHHHhhhhcccccccCCCcccceeEeecC-CCc--ccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTG-DHK--LKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp-~~~--~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
-||+|.|.++|.-+.+++.= -....-.+.+.+---.. ..+ -...-|...+++|+.+++.. ....+| |+|=|.
T Consensus 3 iki~V~Ga~GRMG~~ii~~v--~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~-~~~~~D--V~IDFT 77 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAV--LEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLL-VKADAD--VLIDFT 77 (266)
T ss_pred ceEEEEcCCChHHHHHHHHH--hcCCCceEEEEEecCCccccccchhhhccccccCceeecchhh-cccCCC--EEEECC
Confidence 47999999998755444321 00001122222211110 000 00112334567999999666 344455 455587
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
.| +.....++-|.+.+++ .||=|.||.++..++|.+++++-+ -++-||.
T Consensus 78 ~P-~~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~v~-vv~a~Nf 126 (266)
T COG0289 78 TP-EATLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEKVP-VVIAPNF 126 (266)
T ss_pred Cc-hhhHHHHHHHHHcCCC-eEEECCCCCHHHHHHHHHHHhhCC-EEEeccc
Confidence 77 5677889999889976 777899999999999999998844 4567773
No 105
>PLN02235 ATP citrate (pro-S)-lyase
Probab=94.83 E-value=0.23 Score=56.81 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCCCHHHHHHHhh----cCCCccEEEEEEccCCcch-H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGTTFMDHILRYQ----ADPEVKMIVLLGEVGGVEE-Y 431 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~~~D~l~~l~----~Dp~Tk~I~ly~Eigg~~d-~ 431 (806)
..|+|+.+.--|+++...+|.+...|. -...|.-+|+.+ ..-...+.+.-+. .||++|+|++-+ .||+.+ -
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnI-fGGI~rcd 345 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLI-GGGIANFT 345 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEE-ecccccch
Confidence 459999999999999999999999884 488999999973 3445566666665 799999998888 689986 3
Q ss_pred H-------HHHHHHhcC-----CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--CcccCChh
Q psy16953 432 E-------VCAALKDKR-----ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--AHVPSSFD 497 (806)
Q Consensus 432 ~-------f~~a~r~~~-----~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--vi~v~~~~ 497 (806)
. +.+++++.. .++|||+=..|++.. ..-...+.++++.| +...+.-.
T Consensus 346 ~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~e-------------------eG~~il~e~~~~~gl~i~~~~~~~ 406 (423)
T PLN02235 346 DVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQ-------------------KGLAKMRALGEEIGVPIEVYGPEA 406 (423)
T ss_pred hhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHH-------------------HHHHHHHHhHHhcCCcEEEeCCCC
Confidence 3 445666653 478999977777664 11122455566999 56666222
Q ss_pred hHHHHHHHHHH
Q psy16953 498 TLGDIIGSVYK 508 (806)
Q Consensus 498 EL~~~~~all~ 508 (806)
+|-++++.+.+
T Consensus 407 ~m~~a~~~av~ 417 (423)
T PLN02235 407 TMTGICKQAID 417 (423)
T ss_pred CHHHHHHHHHh
Confidence 45555554443
No 106
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=94.72 E-value=0.14 Score=58.83 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=64.1
Q ss_pred cccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
..-....|.|+...++ .+.||||++.++.. +-+|.++.++||+|+-|++.+.+.+..-|. .|..-+.......-
T Consensus 50 ~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~-~~~feEva~LLl~G~LP~~~el~~f~~~L~---~~~~lp~~v~~~i~ 125 (419)
T PRK05614 50 TSTASCESKITYIDGDKGILLYRGYPIEQLAE-KSDFLEVCYLLLYGELPTAEQKAEFDTTVT---RHTMVHEQLKRFFR 125 (419)
T ss_pred CCceeeeeeceeEeCCCCEEEECCccHHHHHh-cCCHHHHHHHHHcCcCCCHHHHHHHHHhHh---hccCCCHHHHHHHH
Confidence 3445667788777654 57899999999886 579999999999999999888888887663 33332222121111
Q ss_pred eeccCCChHHHHHHhhcccc
Q psy16953 619 CARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 619 ~aSa~adl~~avaagl~alG 638 (806)
.--..+++...+.+++.+++
T Consensus 126 ~~p~~~hPM~~L~~~vs~l~ 145 (419)
T PRK05614 126 GFRRDAHPMAVLCGVVGALS 145 (419)
T ss_pred hcCCCCCHHHHHHHHHHHHh
Confidence 11124677788888777774
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.67 E-value=0.12 Score=47.90 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=45.6
Q ss_pred ecccccccHHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 254 VLIPVYKKMEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 254 i~~p~y~sv~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
.++++|.|+.+.+.. .+|+++| +. |...-.+.++.|.++|+ .+++=-. ....++.++|.+.++++|..+
T Consensus 46 ~~~~~~~~~~~ll~~~~~D~V~I--~t-p~~~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 46 YGIPVYTDLEELLADEDVDAVII--AT-PPSSHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp TTSEEESSHHHHHHHTTESEEEE--ES-SGGGHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred hcccchhHHHHHHHhhcCCEEEE--ec-CCcchHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 358899999994442 4555555 55 44455555555555887 4444322 445588899999999999765
No 108
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=94.51 E-value=0.16 Score=58.03 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred cccccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++--...+|.|+...+ ..++||||++.++.. +.+|-++.++||+|+.|++++.+-+..-|.-. ..-+....
T Consensus 29 ~G-L~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~-~~sfEEva~LL~~G~lP~~~el~~f~~~L~~~---~~lp~~v~ 103 (400)
T cd06114 29 PG-FMNTASCESAITYIDGEKGILRYRGYPIEQLAE-KSSFLEVCYLLLYGELPTAEQLQEFREEITRH---TLVHEQMK 103 (400)
T ss_pred CC-CCCceeEeeeCeEEeCCCCEEEECCccHHHHHh-cCCHHHHHHHHHcCcCCCHHHHHHHHHHHHHc---cCCCHHHH
Confidence 45 3444566788887764 468899999999886 57899999999999988888877777776432 22222212
Q ss_pred eeeeeec--cCCChHHHHHHhhcccc
Q psy16953 615 NTIVCAR--AGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 615 aarv~aS--a~adl~~avaagl~alG 638 (806)
. +..+ ...++...+.+++++++
T Consensus 104 ~--~i~~~p~~~~pm~~l~~~vs~l~ 127 (400)
T cd06114 104 R--FFNGFPRDAHPMAILSAMVNALS 127 (400)
T ss_pred H--HHHhcccCCCHHHHHHHHHHHHh
Confidence 1 2222 24677777777777774
No 109
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=94.17 E-value=0.25 Score=56.87 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=67.9
Q ss_pred hcccccccccceeccccccccc-cccCCCCccccccC------CCCH--HHHHHHHHhcCCCChHHHHHHHHHhhhccCC
Q psy16953 536 ELGLIRKPASFMTSICDERGQE-LLYAGMPISDVLKQ------NMGI--GGVLSLLWFQRQLPPYVCKFLEMSLMVTADH 606 (806)
Q Consensus 536 ~~g~~r~~~~~~t~i~d~~~~~-i~~~G~~i~~~i~~------~~s~--~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADH 606 (806)
..| ++--....|.++...++. +.||||+|.|+... +-+| -++.++||+|+-|++++.+-|..-|.-+.
T Consensus 37 ~~G-L~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~-- 113 (428)
T cd06106 37 LGG-MRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGGEMLPESMLWLLLTGKVPTFEQARGLSKELAERG-- 113 (428)
T ss_pred ccc-ccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccCCccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcC--
Confidence 346 566666677776655433 88999999988763 0367 67999999999999988888888875443
Q ss_pred CCCCcccceeeeeeccCCChHHHHHHhhccccc
Q psy16953 607 GPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 607 g~~~St~~aarv~aSa~adl~~avaagl~alG~ 639 (806)
.-+.......-.-...+++...+.+++++++.
T Consensus 114 -~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (428)
T cd06106 114 -KLPHYIEKLLDSLPKTLHPMTQLSIGVAALNH 145 (428)
T ss_pred -CCCHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Confidence 22222122222223346899999999998863
No 110
>PLN02775 Probable dihydrodipicolinate reductase
Probab=93.67 E-value=0.55 Score=51.19 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--ccccc--ccHHHHhcc--
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVY--KKMEDAMSK-- 268 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y--~sv~daip~-- 268 (806)
.....+|+|-|+.+|. ++.+.+.+| .+.+.+.+-... +.. +.+.. +++.| .++++++..
T Consensus 8 ~~~~i~V~V~Ga~G~MG~~~~~av~~~~~-------~Lv~~~~~~~~~--~~~--~~~~~g~~v~~~~~~dl~~~l~~~~ 76 (286)
T PLN02775 8 PGSAIPIMVNGCTGKMGHAVAEAAVSAGL-------QLVPVSFTGPAG--VGV--TVEVCGVEVRLVGPSEREAVLSSVK 76 (286)
T ss_pred cCCCCeEEEECCCChHHHHHHHHHhcCCC-------EEEEEecccccc--ccc--cceeccceeeeecCccHHHHHHHhh
Confidence 3455699999999986 444445555 223333322111 110 00111 48888 899987644
Q ss_pred --CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 269 --NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 269 --~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
.||+++|. |. .++++.+.++.|.+.|++ +||-|.||.++..+ +++.+.++ -++-||.
T Consensus 77 ~~~~~~VvID-FT-~P~a~~~~~~~~~~~g~~-~VvGTTG~~~e~l~---~~~~~~~i~vv~apNf 136 (286)
T PLN02775 77 AEYPNLIVVD-YT-LPDAVNDNAELYCKNGLP-FVMGTTGGDRDRLL---KDVEESGVYAVIAPQM 136 (286)
T ss_pred ccCCCEEEEE-CC-ChHHHHHHHHHHHHCCCC-EEEECCCCCHHHHH---HHHhcCCccEEEECcc
Confidence 38855543 54 446788899999989987 67789999887444 44444454 5677774
No 111
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=93.49 E-value=0.08 Score=60.78 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=66.5
Q ss_pred cccccccccceecccccccc-ccccCCCCccccc--cCCCC------HHHHHHHHHhcCCCChHHHHHHHHHhhhccCCC
Q psy16953 537 LGLIRKPASFMTSICDERGQ-ELLYAGMPISDVL--KQNMG------IGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHG 607 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~-~i~~~G~~i~~~i--~~~~s------~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg 607 (806)
.| +|.-....|.|+.-.++ .+.||||+|.|+. -++.+ |-+++++||+|.-|++++.+-|..-|.- |+
T Consensus 41 ~G-lrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~---~~ 116 (427)
T TIGR01793 41 GG-MRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRA---RA 116 (427)
T ss_pred Cc-cCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cC
Confidence 45 56666666666665543 3899999998862 12445 8999999999999999998888888843 33
Q ss_pred CCCcccceeeeeeccCCChHHHHHHhhcccc
Q psy16953 608 PAVSGAHNTIVCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 608 ~~~St~~aarv~aSa~adl~~avaagl~alG 638 (806)
.-+..++...-.-....++...+.+++++++
T Consensus 117 ~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~ 147 (427)
T TIGR01793 117 DLPEHVYKTIDALPVTLHPMAQFATAVMALQ 147 (427)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Confidence 3333212221122223588899999999884
No 112
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=92.85 E-value=0.27 Score=56.34 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=50.8
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|++|.+++. |++ +... .++++++.+...-++ .++||||+...++|| |.+..|.+|+++++++.+
T Consensus 104 ~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~-~P~VvKP~~~~gs~G----v~~v~~~~el~~~~~~~~ 170 (420)
T PRK00885 104 AFAKDFMARYGI--PTA-AYET-----FTDAEEALAYLDEKG-APIVVKADGLAAGKG----VVVAMTLEEAKAAVDDML 170 (420)
T ss_pred HHHHHHHHHcCC--CCC-CeEE-----eCCHHHHHHHHHHcC-CCEEEEeCCCCCCCc----EEEeCCHHHHHHHHHHHh
Confidence 456788888877 665 4444 467777765544454 699999998887775 888889999999999876
Q ss_pred C
Q psy16953 89 G 89 (806)
Q Consensus 89 g 89 (806)
.
T Consensus 171 ~ 171 (420)
T PRK00885 171 A 171 (420)
T ss_pred h
Confidence 4
No 113
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=92.80 E-value=0.29 Score=55.46 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=51.3
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+-.|++|.+++. |.+ +... .++.+++.+...-++ .++||||+.+-+++| |.+..|.+|+++++++.
T Consensus 68 K~~~k~~l~~~gI--ptp-~~~~-----~~~~~ea~~~~~~~g-~PvVvKp~~~~~gkG----V~iv~~~~el~~a~~~~ 134 (379)
T PRK13790 68 KLFAKKIMEKYNI--PTA-DYKE-----VERKKDALTYIENCE-LPVVVKKDGLAAGKG----VIIADTIEAARSAIEIM 134 (379)
T ss_pred HHHHHHHHHHCCC--CCC-CEEE-----ECCHHHHHHHHHhcC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 3557888999988 665 4444 466777765544454 699999998877765 67778999999999987
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
++
T Consensus 135 ~~ 136 (379)
T PRK13790 135 YG 136 (379)
T ss_pred Hh
Confidence 63
No 114
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=92.67 E-value=0.061 Score=60.54 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=61.2
Q ss_pred ccccceeccccccccc--cccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeee
Q psy16953 542 KPASFMTSICDERGQE--LLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVC 619 (806)
Q Consensus 542 ~~~~~~t~i~d~~~~~--i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~ 619 (806)
.-....|.|+...++. +.||||++.|+.+ +.+|.++.++||+|.-|++.+.+.++..|.-.. ..+- ....+.
T Consensus 4 gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~-~~sfeeva~LL~~g~lP~~~el~~f~~~l~~~~----~lpe-~v~~~i 77 (356)
T PF00285_consen 4 GVPVCETSISFIDGEKGILRYRGYDIEDLAE-NASFEEVAYLLWYGELPTAEELEEFSAELKERR----ALPE-EVIEVI 77 (356)
T ss_dssp TEEEEEESSEEEETTTTEEEETTEEHHHHHH-HSBHHHHHHHHHHSS--BHHHHHHHHHHHHCTT----S--H-HHHHHH
T ss_pred CCeEeeeeCeEEeCCCCEEEEcCeEHHHHHh-cCCHHHHHHHHHhccCCChhhhccchhHHHhhc----chhH-HHHHHH
Confidence 3456678888776654 9999999999998 789999999999999999988888888875322 1111 111222
Q ss_pred ecc--CCChHHHHHHhhccc
Q psy16953 620 ARA--GKDLVSSLVSGLLTI 637 (806)
Q Consensus 620 aSa--~adl~~avaagl~al 637 (806)
.+- .+++..-+.+++.++
T Consensus 78 ~~lp~~~~pm~~L~~~vs~l 97 (356)
T PF00285_consen 78 EALPRDAHPMDVLRAAVSAL 97 (356)
T ss_dssp HCSTTTS-HHHHHHHHHHHH
T ss_pred hhcCCCCCchHHHHHHHhhh
Confidence 222 456777777777777
No 115
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.59 E-value=0.28 Score=48.72 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=70.2
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCC--CcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGD--HKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~--~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
++|.++|++. ...+||++.|| .|+-.|.+ .-+++ .+.+.....|.+|+ -+..|+.++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-----------~v~~~d~~~~~~~~~----~~~g~~~~~s~~e~-~~~~dvvi~-- 63 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-----------EVTVYDRSPEKAEAL----AEAGAEVADSPAEA-AEQADVVIL-- 63 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-----------EEEEEESSHHHHHHH----HHTTEEEESSHHHH-HHHBSEEEE--
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-----------eEEeeccchhhhhhh----HHhhhhhhhhhhhH-hhcccceEe--
Confidence 5789999863 34889999998 45555543 11111 11247888999995 444455444
Q ss_pred ecCChhhHHHHHHH---hcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 278 FASLRSAYDSTIET---LGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 278 ~~~~~~~~~~~le~---~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
+++...++.++++. +....-..++|-.+-...+..+++.+.++++|++++--
T Consensus 64 ~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 64 CVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred ecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 67777889999887 34344567788788788888888999999999887743
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.29 E-value=0.39 Score=51.81 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=49.3
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC--CHHHHHHHHHHHHHcCCeEEc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI--PENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf--~E~~~~~l~~~a~~~giriiG 328 (806)
+.++|.++++ +...+|+.++ +.+.....+..+++.+.|.. +++.+.|. .+...++|.++|+++|.++.=
T Consensus 48 ~~~~~~~~~e-ll~~~DvVvi---~a~~~~~~~~~~~al~~Gk~-Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v 118 (265)
T PRK13304 48 GAKACLSIDE-LVEDVDLVVE---CASVNAVEEVVPKSLENGKD-VIIMSVGALADKELFLKLYKLAKENNCKIYL 118 (265)
T ss_pred CCeeECCHHH-HhcCCCEEEE---cCChHHHHHHHHHHHHcCCC-EEEEchHHhcCHHHHHHHHHHHHHcCCEEEE
Confidence 4678999999 4466777666 45566666666666557754 66666653 456778999999999988753
No 117
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=92.08 E-value=0.38 Score=55.48 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=52.4
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.-+.+|++|.+|+. |.+ +... .++.+++.+...-++ .++||||+.+-+++| |.+..|.+|+++.+++
T Consensus 108 dK~~~K~~l~~~gI--pt~-~~~~-----~~~~~ea~~~~~~~~-~PvVVKp~~~~~gkG----V~vv~~~eel~~a~~~ 174 (426)
T PRK13789 108 SKHFAKSLMKEAKI--PTA-SYKT-----FTEYSSSLSYLESEM-LPIVIKADGLAAGKG----VTVATEKKMAKRALKE 174 (426)
T ss_pred CHHHHHHHHHHcCC--CCC-CeEe-----eCCHHHHHHHHHhcC-CCEEEEeCCCCCCCc----EEEECCHHHHHHHHHH
Confidence 34668899999988 665 4444 567888766444444 599999998876654 7788899999999998
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 175 ~~ 176 (426)
T PRK13789 175 IF 176 (426)
T ss_pred HH
Confidence 76
No 118
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=92.07 E-value=0.61 Score=50.35 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=48.6
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC-CC-HHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG-IP-ENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~G-f~-E~~~~~l~~~a~~~girii 327 (806)
+.++|.++++ +...+|+++. +++.....+..++|-++|+. +++.+.| +. ++..++|.++|+++|.++.
T Consensus 48 ~~~~~~d~~~-l~~~~DvVve---~t~~~~~~e~~~~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 48 AVRVVSSVDA-LPQRPDLVVE---CAGHAALKEHVVPILKAGID-CAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred CCeeeCCHHH-hccCCCEEEE---CCCHHHHHHHHHHHHHcCCC-EEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 4789999999 6555777666 44555666667777668865 6666665 55 4567889999999987654
No 119
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=91.14 E-value=1.3 Score=48.00 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=67.6
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEe--ecCCCcccccccceee---cccc------cccHHHHhcc
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYP--FTGDHKLKFYWGHKEV---LIPV------YKKMEDAMSK 268 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iyp--vnp~~~~~~~~g~~~i---~~p~------y~sv~daip~ 268 (806)
+|+|-|+.++. ++...+-|+ ++-+ +.++...+- ..++ ++|+ |.++++.+..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~-----------~Lv~~~~~~~~~~~~---~~~~~g~~v~v~~~~~~~~~l~~~~~~ 67 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL-----------EIVPTSFGGEEEAEN---EAEVAGKEILLHGPSEREARIGEVFAK 67 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC-----------EEEeeEccccccccc---hhhhcccceeeeccccccccHHHHHhh
Confidence 68999999885 444444455 3333 232211000 0011 4777 9999996544
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
.+|.++| =|..| +++.+.++.|.+.|++ +|+-|.||.++..++|.+.+ ++ .++-||.
T Consensus 68 ~~d~VvI-DFT~P-~~~~~n~~~~~~~gv~-~ViGTTG~~~~~~~~l~~~~---~i~~l~apNf 125 (275)
T TIGR02130 68 YPELICI-DYTHP-SAVNDNAAFYGKHGIP-FVMGTTGGDREALAKLVADA---KHPAVIAPNM 125 (275)
T ss_pred cCCEEEE-ECCCh-HHHHHHHHHHHHCCCC-EEEcCCCCCHHHHHHHHHhc---CCCEEEECcc
Confidence 4884333 35545 5677789999989987 66678999998777775442 34 6678873
No 120
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.74 E-value=0.82 Score=46.74 Aligned_cols=94 Identities=16% Similarity=0.370 Sum_probs=64.9
Q ss_pred CCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeec-ccccccHHH---Hhcc-CCCee
Q psy16953 199 GQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL-IPVYKKMED---AMSK-NKDAD 273 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~-~p~y~sv~d---aip~-~~Dla 273 (806)
.++.|+++++|++. ..+.++.|.| ..+.+..+ -.+|=++|+- + | ++++ +|+|. +++ -+.+ .+|.+
T Consensus 81 ~~~~tnviiVG~Gn-lG~All~Y~f-~~~~~~~i-v~~FDv~~~~---V--G-~~~~~v~V~~-~d~le~~v~~~dv~ia 150 (211)
T COG2344 81 QDKTTNVIIVGVGN-LGRALLNYNF-SKKNGMKI-VAAFDVDPDK---V--G-TKIGDVPVYD-LDDLEKFVKKNDVEIA 150 (211)
T ss_pred CCcceeEEEEccCh-HHHHHhcCcc-hhhcCceE-EEEecCCHHH---h--C-cccCCeeeec-hHHHHHHHHhcCccEE
Confidence 45889999999984 4556666665 33333233 2577788752 2 3 5564 88885 444 2222 56677
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~ 305 (806)
++ ++|+....++.+.+.++|||++.=+|.
T Consensus 151 iL---tVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 151 IL---TVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred EE---EccHHHHHHHHHHHHHcCCceEEeccc
Confidence 76 779999999999999999999998886
No 121
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.46 E-value=0.79 Score=50.41 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=49.3
Q ss_pred eeecc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE-
Q psy16953 252 KEVLI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI- 326 (806)
Q Consensus 252 ~~i~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri- 326 (806)
++.++ .+|.|+++.+.. +|+++++|..|+....+-+++++. +|.. |+.+ ....++.++|+++|+++|+.+
T Consensus 48 ~~~~~~~~~~~~~~ll~~-~~iD~V~Iatp~~~H~e~~~~AL~-aGkh---Vl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 48 EEFGIAKAYTDLEELLAD-PDIDAVYIATPNALHAELALAALE-AGKH---VLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred HHcCCCcccCCHHHHhcC-CCCCEEEEcCCChhhHHHHHHHHh-cCCE---EEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34456 499999995544 445555557777777777777776 7763 4444 233367779999999998654
Q ss_pred EccC
Q psy16953 327 IGPA 330 (806)
Q Consensus 327 iGPN 330 (806)
+|-|
T Consensus 123 v~~~ 126 (342)
T COG0673 123 VGFN 126 (342)
T ss_pred eehh
Confidence 4443
No 122
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=90.29 E-value=0.89 Score=48.14 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=53.2
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC-CC-HHHHHHHHHHHHHcCCeE-EccCc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG-IP-ENMTRKLNLLAKEKGVSI-IGPAT 331 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~G-f~-E~~~~~l~~~a~~~giri-iGPN~ 331 (806)
+.++|.++++.+...+|++++ ++|.....+..+++-++|.. ++|.+.| +. .++.++|++.|+++|.++ ++|+-
T Consensus 23 g~~~~~d~~eLl~~~vDaVvi---atp~~~H~e~a~~aL~aGkh-Vl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~sGa 98 (229)
T TIGR03855 23 GAKIVSDFDEFLPEDVDIVVE---AASQEAVKEYAEKILKNGKD-LLIMSVGALADRELRERLREVARSSGRKVYIPSGA 98 (229)
T ss_pred CCceECCHHHHhcCCCCEEEE---CCChHHHHHHHHHHHHCCCC-EEEECCcccCCHHHHHHHHHHHHhcCCEEEEChHH
Confidence 468899999955666887776 66666666666666668865 6666765 43 378889999999999776 44433
Q ss_pred cc
Q psy16953 332 VG 333 (806)
Q Consensus 332 ~G 333 (806)
+|
T Consensus 99 i~ 100 (229)
T TIGR03855 99 IG 100 (229)
T ss_pred HH
Confidence 33
No 123
>PLN02257 phosphoribosylamine--glycine ligase
Probab=90.22 E-value=0.45 Score=55.02 Aligned_cols=69 Identities=17% Similarity=0.054 Sum_probs=51.9
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+..|++|.+|++ |++ +... .++.+++.+...-++ .++||||+-+-+++ +|.+..|.+|+++.+++.
T Consensus 103 K~~~K~~l~~~GI--ptp-~~~~-----~~~~~e~~~~~~~~g-~PvVVKp~~~~~Gk----GV~iv~~~~el~~a~~~~ 169 (434)
T PLN02257 103 KNFMKDLCDKYKI--PTA-KYET-----FTDPAAAKKYIKEQG-APIVVKADGLAAGK----GVVVAMTLEEAYEAVDSM 169 (434)
T ss_pred HHHHHHHHHHcCC--CCC-CeEE-----eCCHHHHHHHHHHcC-CCEEEEcCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 4567899999988 665 4444 467888766544454 59999999776666 477888999999999887
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
+.
T Consensus 170 ~~ 171 (434)
T PLN02257 170 LV 171 (434)
T ss_pred Hh
Confidence 54
No 124
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=89.45 E-value=0.74 Score=57.82 Aligned_cols=68 Identities=13% Similarity=0.000 Sum_probs=50.5
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceee-cCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKV-NTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l-~~~~~e~~~~~~~ 86 (806)
-+..|++|.+++. |++ +..+ .++.+++.+..+-++ .|+||||..--.++ +|.+ ..|.+|+++.++.
T Consensus 214 K~~tk~lL~~~GI--pvP-~~~~-----~~s~~ea~~~~~~ig-~PvVVKP~~g~~G~----GV~l~v~s~~el~~a~~~ 280 (864)
T TIGR02068 214 KDLTKEILSDAGV--PVP-EGTV-----VQSAEDAWEAAQDLG-YPVVIKPYDGNHGR----GVTINILTRDEIESAYEA 280 (864)
T ss_pred HHHHHHHHHHcCc--CCC-CEEE-----ECCHHHHHHHHHHcC-CCEEEEECCCCCcc----CEEEEeCCHHHHHHHHHH
Confidence 3567899999988 887 6655 578888887776776 79999999754333 4666 4688999888776
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
..
T Consensus 281 a~ 282 (864)
T TIGR02068 281 AV 282 (864)
T ss_pred HH
Confidence 43
No 125
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=88.96 E-value=0.58 Score=53.56 Aligned_cols=69 Identities=22% Similarity=0.149 Sum_probs=50.2
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCC-eEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSK-LVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ +... .++.+++.+...-++ .+ +||||+..-++|| |.+..|.+|+.+++++.
T Consensus 106 ~~~k~~l~~~gI--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~~VvKp~~~~gg~G----v~~v~~~~el~~~~~~~ 172 (423)
T TIGR00877 106 AFAKDFMKRYGI--PTA-EYEV-----FTDPEEALSYIQEKG-APAIVVKADGLAAGKG----VIVAKTNEEAIKAVEEI 172 (423)
T ss_pred HHHHHHHHHCCC--CCC-CeEE-----ECCHHHHHHHHHhcC-CCeEEEEECCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 455677777776 554 4444 467777766555555 58 9999998877764 88888999999999887
Q ss_pred cCC
Q psy16953 88 MGK 90 (806)
Q Consensus 88 ~g~ 90 (806)
+..
T Consensus 173 ~~~ 175 (423)
T TIGR00877 173 LEQ 175 (423)
T ss_pred HHH
Confidence 654
No 126
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=88.46 E-value=1.5 Score=49.17 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred eecccccccHHHHhccCCCeeEEEeec--CChhhHHHHHHHhcCCCCCEEEEEcCC-CCHHHHHHHHHHHHHcCCeEE
Q psy16953 253 EVLIPVYKKMEDAMSKNKDADVLVNFA--SLRSAYDSTIETLGFPQIRSIAIIAEG-IPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 253 ~i~~p~y~sv~daip~~~Dlavivi~~--~~~~~~~~~le~~~~~gvk~~viis~G-f~E~~~~~l~~~a~~~girii 327 (806)
..++|.|.|++| +.+.+|+++|++.. ++....+-+++++. +|+. ++ .+- +..++.++|+++|+++|+.+.
T Consensus 47 ~~gi~~y~~~ee-ll~d~Di~~V~ipt~~P~~~H~e~a~~aL~-aGkH-VL--~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 47 RLGVPLYCEVEE-LPDDIDIACVVVRSAIVGGQGSALARALLA-RGIH-VL--QEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HhCCCccCCHHH-HhcCCCEEEEEeCCCCCCccHHHHHHHHHh-CCCe-EE--EcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 446899999999 67889999996632 33455565666555 8854 43 342 345778899999999998876
No 127
>PRK14016 cyanophycin synthetase; Provisional
Probab=88.16 E-value=1.1 Score=55.24 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=50.3
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceee-cCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKV-NTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l-~~~~~e~~~~~~~~ 87 (806)
...|++|.+++. |++ +..+ .++.+++.+....++ .|+||||..- ..| .+|.+ ..|.+|+++.++..
T Consensus 216 ~~tk~lL~~~GI--PvP-~~~~-----v~s~~~a~~~a~~iG-~PvVVKP~~G--~~G--~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 216 ELTKRLLAAAGV--PVP-EGRV-----VTSAEDAWEAAEEIG-YPVVVKPLDG--NHG--RGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred HHHHHHHHHCCc--CCC-CeeE-----eCCHHHHHHHHHHcC-CCEEEEECCC--CCC--CceEEecCCHHHHHHHHHHH
Confidence 457899999988 887 6665 578888888777776 7999999863 323 24666 46889999888765
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 283 ~ 283 (727)
T PRK14016 283 S 283 (727)
T ss_pred H
Confidence 4
No 128
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=88.13 E-value=1.3 Score=40.89 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=51.9
Q ss_pred eEEEEccChhH---HHhhhhcccccccCCCcccceeE--eecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 204 KAIVWGMQTRA---VQSMLDFDFVCRRSEPSVAAMVY--PFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 204 ~v~V~G~~~r~---~~~ll~~gf~~~~~~~~~~g~iy--pvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
||+|+|-++|. ...|.++.- .-+|| |-||. ++. +.+. +-
T Consensus 2 kVLviGsGgREHAia~~l~~s~~---------v~~v~~aPGN~G-------------------~~~-~~~~----~~--- 45 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSPS---------VEEVYVAPGNPG-------------------TAE-LGKN----VP--- 45 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTT---------EEEEEEEE--TT-------------------GGG-TSEE----E----
T ss_pred EEEEECCCHHHHHHHHHHhcCCC---------CCEEEEeCCCHH-------------------HHh-hcee----cC---
Confidence 79999999996 444544432 33555 66665 222 2221 11
Q ss_pred cCChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEccC
Q psy16953 279 ASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGPN 330 (806)
+ .....+++++-|.+.+|..+||= || -+..=+.+..++.|++++||+
T Consensus 46 ~-~~~d~~~l~~~a~~~~idlvvvG----PE~pL~~Gl~D~l~~~gi~vfGP~ 93 (100)
T PF02844_consen 46 I-DITDPEELADFAKENKIDLVVVG----PEAPLVAGLADALRAAGIPVFGPS 93 (100)
T ss_dssp S--TT-HHHHHHHHHHTTESEEEES----SHHHHHTTHHHHHHHTT-CEES--
T ss_pred C-CCCCHHHHHHHHHHcCCCEEEEC----ChHHHHHHHHHHHHHCCCcEECcC
Confidence 1 44567888888888999877762 44 356667888888999999996
No 129
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.89 E-value=3.5 Score=48.33 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=68.9
Q ss_pred ceEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccc--eeec--ccccccHHHHhcc--CCCee
Q psy16953 203 TKAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGH--KEVL--IPVYKKMEDAMSK--NKDAD 273 (806)
Q Consensus 203 t~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~--~~i~--~p~y~sv~daip~--~~Dla 273 (806)
.+|.|+|++ ....+||.+.|| .|+-.|.+...-.-+-. ..-+ +.++.|++|++.. .+|+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-----------~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~I 70 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-----------KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKV 70 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEE
Confidence 368899976 445889999998 45555654210000000 0002 3467899996543 46654
Q ss_pred EEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 274 VLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
++ ++++...++++++.+.. ..-..+||-.+...+.+..++.+.++++|+++++--
T Consensus 71 il--~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 71 IL--LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred EE--EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 44 67888899999887652 112234444444444555556677788899998763
No 130
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=86.86 E-value=1.3 Score=48.09 Aligned_cols=68 Identities=15% Similarity=0.020 Sum_probs=44.6
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+-.|++|.+++. |++ +... + ++.+++.....-++ .++||||..--+++| |.+..+.+|+++++++.
T Consensus 99 K~~~k~~l~~~gI--p~p-~~~~--~---~~~~~~~~~~~~~~-~P~ivKP~~g~~s~G----v~~v~~~~el~~~~~~~ 165 (304)
T PRK01372 99 KLRTKLVWQAAGL--PTP-PWIV--L---TREEDLLAAIDKLG-LPLVVKPAREGSSVG----VSKVKEEDELQAALELA 165 (304)
T ss_pred HHHHHHHHHHCCC--CCC-CEEE--E---eCcchHHHHHhhcC-CCEEEeeCCCCCCCC----EEEeCCHHHHHHHHHHH
Confidence 4556788888877 666 4443 2 23333333333344 589999999666554 55666899999998876
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 166 ~ 166 (304)
T PRK01372 166 F 166 (304)
T ss_pred H
Confidence 5
No 131
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=86.66 E-value=1.5 Score=46.00 Aligned_cols=51 Identities=29% Similarity=0.422 Sum_probs=38.0
Q ss_pred CHHHHHHHhhcCCCccEEEEEEcc--CCcch-HHHHHHHHhcC-CCCCEEEEEeC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEV--GGVEE-YEVCAALKDKR-ITKPLVAWCIG 452 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Ei--gg~~d-~~f~~a~r~~~-~~KPVV~lk~G 452 (806)
++.+.|+.+.+||++|+|++.++- |+..+ .++.+++++.+ .+||||++-.|
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG 87 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 456677778899999999999982 22233 66777777765 68999999664
No 132
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=86.51 E-value=4.5 Score=44.29 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=75.5
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
++|.++|++. ...+||++.|| .-.+|=.+|..-.+. ....|...+.|..|+ -+..|+ |+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~---------~v~v~~r~~~ka~~~---~~~~Ga~~a~s~~ea-a~~aDv--Vitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH---------EVTVYNRTPEKAAEL---LAAAGATVAASPAEA-AAEADV--VITML 65 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC---------EEEEEeCChhhhhHH---HHHcCCcccCCHHHH-HHhCCE--EEEec
Confidence 4789999763 45889999999 445555554310000 012367889999884 444555 44478
Q ss_pred CChhhHHHHHHH----hcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 280 SLRSAYDSTIET----LGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 280 ~~~~~~~~~le~----~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+....+.+++-. +....-..++|-.+-++....+++.+.++++|++++
T Consensus 66 ~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 66 PDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 888888888853 222334567888888888899999999999997766
No 133
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.09 E-value=2.3 Score=46.59 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=64.2
Q ss_pred eEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc--CCCeeEEEee
Q psy16953 204 KAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK--NKDADVLVNF 278 (806)
Q Consensus 204 ~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~--~~Dlavivi~ 278 (806)
+|.|+|++ ....++|++.|| +|+-.|++.....-+ .+.+..++.|.+|++.. .+|+.++ +
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-----------~v~v~dr~~~~~~~~--~~~g~~~~~~~~e~~~~~~~~dvvi~--~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-----------EVVGYDRNPEAVEAL--AEEGATGADSLEELVAKLPAPRVVWL--M 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-----------eEEEEECCHHHHHHH--HHCCCeecCCHHHHHhhcCCCCEEEE--E
Confidence 68899966 345789999987 455555542100000 12356778889884333 2565444 5
Q ss_pred cCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 279 ASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+++...+.++++.+.. ..-..++|-.+.......+++.+.+++.|++++
T Consensus 67 v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 67 VPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred ecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 5555467777666532 112245555554555566677788888888776
No 134
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=85.79 E-value=1.6 Score=50.61 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=45.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeec----CCHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVN----TDFKGAQSWI 84 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~----~~~~e~~~~~ 84 (806)
+..|++|.+|+. |.+..... +++.+|+...+.-+ ..++||||+-+.++|| |.+. .+.+++.+++
T Consensus 107 ~~~k~~l~~~gI--ptp~~~~~-----~~~~~e~~~~~~~~-~~PvVVKP~~~sggkG----V~v~~~~~~~~~ea~~~~ 174 (435)
T PRK06395 107 MFMRYLMERHNI--PGNINFNA-----CFSEKDAARDYITS-MKDVAVKPIGLTGGKG----VKVTGEQLNSVDEAIRYA 174 (435)
T ss_pred HHHHHHHHHCCc--CCCcccce-----eCChHHHHHHHHhh-CCCEEEEeCCCCCCCC----eEEecCchhhHHHHHHHH
Confidence 445777888866 44312223 45667777766555 4699999999999884 5554 4567877777
Q ss_pred HHHc
Q psy16953 85 SERM 88 (806)
Q Consensus 85 ~~~~ 88 (806)
.+..
T Consensus 175 ~~~~ 178 (435)
T PRK06395 175 IEIL 178 (435)
T ss_pred HHHh
Confidence 7754
No 135
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=85.25 E-value=1.8 Score=46.86 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=51.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE-EccCcccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSI-IGPATVGG 334 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giri-iGPN~~Gi 334 (806)
.++|.++++ +-..+|+.++ ++|.....+..+++.++|.. +++.+.|= -.+.++|.+.|+++|.++ ++|.-++.
T Consensus 55 ~~~~~~~ee-ll~~~D~Vvi---~tp~~~h~e~~~~aL~aGk~-Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 55 PPPVVPLDQ-LATHADIVVE---AAPASVLRAIVEPVLAAGKK-AIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred CcccCCHHH-HhcCCCEEEE---CCCcHHHHHHHHHHHHcCCc-EEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 467999999 5566787666 55666677777777668854 55555441 135689999999999988 66555543
No 136
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=84.89 E-value=5.2 Score=43.30 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=72.7
Q ss_pred CceEEEEccC--hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-c-ccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQ--TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-L-IPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~--~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~-~p~y~sv~daip~~~Dlavivi 277 (806)
..||.++|.+ ++.+...+..|. ...-++.-|+.+..++ .+.+ + .+++.++++.+...||+.|=
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~-------~~~~~l~~V~~~~~~~----~~~~~~~~~~~~~l~~ll~~~~DlVVE-- 68 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADA-------AQPCQLAALTRNAADL----PPALAGRVALLDGLPGLLAWRPDLVVE-- 68 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCC-------CCceEEEEEecCCHHH----HHHhhccCcccCCHHHHhhcCCCEEEE--
Confidence 3588999987 455444444442 0012344443331000 0111 2 78999999944889998776
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEcc
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGP 329 (806)
+....++.+..+.+-++|+..+++-.+-|.. ++.++|.+.|+++|-++.=|
T Consensus 69 -~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 69 -AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred -CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 6566778777777776888755543355775 78899999999988777544
No 137
>PRK12350 citrate synthase 2; Provisional
Probab=84.63 E-value=0.7 Score=51.97 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=39.4
Q ss_pred ccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChH
Q psy16953 542 KPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPY 591 (806)
Q Consensus 542 ~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~ 591 (806)
.-..-+|.|+...++ .+.||||+|.|+.. +-+|-++.++||+|+.|+..
T Consensus 7 ~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~-~~sFeEva~LL~~G~LP~~~ 57 (353)
T PRK12350 7 GVVAFETEIAEPDGDGGALRYRGVDIEDLVG-RVTFEDVWALLVDGRFGPGL 57 (353)
T ss_pred CceeEeeeCcceeCCCCEEEECCccHHHHhc-cCCHHHHHHHHHCCCCCCcc
Confidence 335567788877665 58899999999886 57999999999999987653
No 138
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=84.38 E-value=2 Score=44.72 Aligned_cols=55 Identities=35% Similarity=0.483 Sum_probs=41.6
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEccCC--cch-HHHHHHHHhcCCCCCEEEEEeCcCc
Q psy16953 401 TTFMDHILRYQADPEVKMIVLLGEVGG--VEE-YEVCAALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 401 ~~~~D~l~~l~~Dp~Tk~I~ly~Eigg--~~d-~~f~~a~r~~~~~KPVV~lk~Grs~ 455 (806)
-++.+.|+.+.+||++++|++.++-+| ... ..+.+++++.+.+||||++.-|-+.
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~ 85 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAA 85 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchh
Confidence 467788888999999999999988322 222 5577777776458999999887654
No 139
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.04 E-value=3.8 Score=44.87 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=64.7
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCC--cccccccceeecccccccHHHHhccC--CCeeEEE
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDH--KLKFYWGHKEVLIPVYKKMEDAMSKN--KDADVLV 276 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~--~~~~~~g~~~i~~p~y~sv~daip~~--~Dlaviv 276 (806)
+|.++|++. ...++|++.|| .|+-.|.+. -+++ .+.+..++.|.++++.+. .|+.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-----------~v~v~dr~~~~~~~~----~~~g~~~~~s~~~~~~~~~~advVi-- 64 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-----------EVVGYDVNQEAVDVA----GKLGITARHSLEELVSKLEAPRTIW-- 64 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-----------EEEEEECCHHHHHHH----HHCCCeecCCHHHHHHhCCCCCEEE--
Confidence 588899763 34789999887 344344431 0011 123567888999843332 45544
Q ss_pred eecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 277 NFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+++++...+.++++.+.. ..-+.++|-.+.......+++.+.++++|++++
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 456555588888877642 122356676766666667777777777776544
No 140
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=83.85 E-value=4.4 Score=45.88 Aligned_cols=116 Identities=11% Similarity=0.019 Sum_probs=64.4
Q ss_pred eEEEEccChhHHH----hhh-hcccccccCCCccc-ceeEeecC--CCcccccccceeecccccccHHHHhccCCCeeEE
Q psy16953 204 KAIVWGMQTRAVQ----SML-DFDFVCRRSEPSVA-AMVYPFTG--DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVL 275 (806)
Q Consensus 204 ~v~V~G~~~r~~~----~ll-~~gf~~~~~~~~~~-g~iypvnp--~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavi 275 (806)
+|+|+|+++-..+ .|. +..| . ..++++.. ..++...|+.+.+-+.......+ . ..+|+++.
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~f---------p~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~-~-~~vDivff 70 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDF---------DAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDA-L-KALDIIIT 70 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCC---------ccccEEEEEchhhCCCcCCCCCCcceEEcCccccc-c-cCCCEEEE
Confidence 6899999987644 344 3444 3 67777765 23445555544332111111112 2 34666555
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEEcCC-C----------CHHHHHHHHHHHHHcCCe-EEccCcccc
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAIIAEG-I----------PENMTRKLNLLAKEKGVS-IIGPATVGG 334 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~viis~G-f----------~E~~~~~l~~~a~~~gir-iiGPN~~Gi 334 (806)
+.+.+........+.++|..++||=.++ | ||---+.+.. ..++|+. +.+|||.-+
T Consensus 71 ---a~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 71 ---CQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GLNNGIRTFVGGNCTVS 137 (366)
T ss_pred ---cCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HHhCCcCeEECcCHHHH
Confidence 7777777777777877887665554443 3 2211112322 2357775 889999543
No 141
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=82.88 E-value=2.5 Score=52.33 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=54.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH-
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER- 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~- 87 (806)
+-.|++|.+++. |++ +..+ ..+.+++.+....+...++||||..--.++|=. +++-..+.+|+++.++..
T Consensus 490 ~~tk~lL~~~GI--pvP-~~~~-----~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~-~~~~~~~~eel~~A~~~a~ 560 (752)
T PRK02471 490 VVTKKILAEAGF--PVP-AGDE-----FTSLEEALADYSLFADKAIVVKPKSTNFGLGIS-IFKEPASLEDYEKALEIAF 560 (752)
T ss_pred HHHHHHHHHCCc--CCC-CEEE-----EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeE-EecCcCCHHHHHHHHHHHH
Confidence 457899999988 777 5554 457888877665544479999999877766422 111124678777776643
Q ss_pred ------------cCCeeEEEEEec
Q psy16953 88 ------------MGKDQVVLITGG 99 (806)
Q Consensus 88 ------------~g~~i~~~~i~G 99 (806)
-|.+++|++|.|
T Consensus 561 ~~~~~vlVEEfI~G~E~Rv~Vigg 584 (752)
T PRK02471 561 REDSSVLVEEFIVGTEYRFFVLDG 584 (752)
T ss_pred hcCCcEEEEecccCCEEEEEEECC
Confidence 266667777644
No 142
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=81.83 E-value=2.7 Score=46.97 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=66.0
Q ss_pred CCceEEEEccCh--h-HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT--R-AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~--r-~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
++.+|.|+|.+. + ..++|+++|+ .|+-.+++.....-. ....++.+. +++++ -+..|+.++
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~-----------~Vvv~~r~~~~s~~~-A~~~G~~~~-s~~ea-a~~ADVVvL-- 79 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGV-----------DVVVGLREGSKSWKK-AEADGFEVL-TVAEA-AKWADVIMI-- 79 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCC-----------EEEEEECCchhhHHH-HHHCCCeeC-CHHHH-HhcCCEEEE--
Confidence 456799999764 2 4789999986 333222221100000 012244444 88884 455676555
Q ss_pred ecCChhhHHHHH-HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccc
Q psy16953 278 FASLRSAYDSTI-ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIG 343 (806)
Q Consensus 278 ~~~~~~~~~~~l-e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig 343 (806)
++|.....+++ +++.. ..-..+++++.||+-+..+... -....+-.+=||+.|-.....+.+|
T Consensus 80 -aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~~p--~~~~~Vi~vaPn~Pg~~vr~~~~~G 144 (330)
T PRK05479 80 -LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQIVP--PADVDVIMVAPKGPGHLVRREYEEG 144 (330)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhceecc--CCCCcEEEeCCCCCchhhhhhhhcC
Confidence 44555557776 54531 1223577999999864332111 1112344445988886555543444
No 143
>PRK11579 putative oxidoreductase; Provisional
Probab=81.41 E-value=4.7 Score=44.94 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=46.5
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
.++|.++++.+ +.+|+++++|+.++....+-+++++. +|. .++|==. ....+..++|+++|+++|+.+
T Consensus 50 ~~~~~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~-aGk-hVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 50 VTVVSEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALE-AGK-HVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CceeCCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHH-CCC-eEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 67899999954 44566666667766666666666665 774 4554211 334467889999999999775
No 144
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=81.38 E-value=7.7 Score=45.75 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=72.7
Q ss_pred CCceEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCc--ccccccceeec---ccccccHHHHhcc--CC
Q psy16953 201 EQTKAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFYWGHKEVL---IPVYKKMEDAMSK--NK 270 (806)
Q Consensus 201 ~~t~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~~g~~~i~---~p~y~sv~daip~--~~ 270 (806)
.-++|-++|++ ....+||++.|| .|+-.|.+.. +++.-.....| +..+.|++|++.. .+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~-----------~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~ 73 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF-----------PISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKP 73 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC-----------eEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCC
Confidence 34579999965 456889999999 5555565421 01100000002 2367899995433 37
Q ss_pred CeeEEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
|+.++ +++...+++++++.+.. ..-..++|-.+-....+.+++.+.++++|+++++--
T Consensus 74 dvIi~--~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 74 RSVII--LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred CEEEE--ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 66555 67777788888765431 122346665665656777788888899999999764
No 145
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=80.23 E-value=3.3 Score=46.22 Aligned_cols=67 Identities=13% Similarity=-0.163 Sum_probs=45.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+.-|++|.+++. |++ +... .++.+++.+...-++ .|+||||...- ++| +|.+..+.+|+++.+++.
T Consensus 100 ~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~~g~~g~----Gv~~v~~~~el~~a~~~~ 166 (352)
T TIGR01161 100 LTQKQFLQKLGL--PVP-PFLV-----IKDEEELDAALQELG-FPVVLKARTGGYDGR----GQYRIRNEADLPQAAKEL 166 (352)
T ss_pred HHHHHHHHHcCC--CCC-CccE-----eCCHHHHHHHHHHcC-CCEEEEeCCCCCCCC----CEEEECCHHHHHHHHHhc
Confidence 445677777766 655 4444 457777766555555 69999998652 333 466667899999888875
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 167 ~ 167 (352)
T TIGR01161 167 G 167 (352)
T ss_pred C
Confidence 4
No 146
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=80.01 E-value=3.6 Score=40.52 Aligned_cols=53 Identities=34% Similarity=0.421 Sum_probs=39.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEc-cCCcc-h-HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGE-VGGVE-E-YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~-d-~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
++.+.|+.+.+|++++.|++++. .||.- . ..+.+++++. +|||+++.-|.+..
T Consensus 15 ~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~~~s 70 (161)
T cd00394 15 QLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAAS 70 (161)
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh--CCCEEEEECChhHH
Confidence 35677788899999999999987 33332 2 5567777764 49999999877653
No 147
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=80.00 E-value=3.7 Score=49.45 Aligned_cols=178 Identities=9% Similarity=-0.057 Sum_probs=109.6
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHH-hcCCCCCEEEEEcCCCCHHHHHHHHH-HHHHcCC-eEEccCc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIET-LGFPQIRSIAIIAEGIPENMTRKLNL-LAKEKGV-SIIGPAT 331 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~-~~~~gvk~~viis~Gf~E~~~~~l~~-~a~~~gi-riiGPN~ 331 (806)
|-++|...+. +++..+.... . +.+.....-+. +....++..+-+++++.++.-++-.+ .++..++ .++.=.|
T Consensus 309 Gg~gvla~D~-l~~~g~~l~~---~-~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi~~ 383 (598)
T COG1042 309 GGPGVLAADA-LEERGLKLAE---L-SEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVL 383 (598)
T ss_pred CCccccchhH-HHHcCCCcCC---C-CHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEEec
Confidence 4788888888 6665533222 1 22233322222 45789999999999998854433333 3333332 2332222
Q ss_pred cccccCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHHHH-HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHh
Q psy16953 332 VGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELN-NIISKATNGVYEGVAIGGDRYPGTTFMDHILRY 410 (806)
Q Consensus 332 ~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~-~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l 410 (806)
.+..... ... .....++ .....|+.++++|.|+...... ..+.++|++++.....++. +...+.++..++
T Consensus 384 ~~~~~~~-~~~---a~~~~~~---~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~--a~~~l~~~~~~~ 454 (598)
T COG1042 384 PPASADP-EET---AEAIIRA---TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVK--ALSALARYRRWL 454 (598)
T ss_pred CCCCCCc-hhh---hHHHHHh---hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHH--HHHHHHHHHHHH
Confidence 2211111 000 0111111 2346789999999999433332 4578889999999999999 899999999999
Q ss_pred hcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCC
Q psy16953 411 QADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGS 469 (806)
Q Consensus 411 ~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGa 469 (806)
..+.+| .|.| +. ++..+.+.++++- ......+|+..
T Consensus 455 ~~~~~~----~~~~--~~---------------~~~~~~~~e~~~~--l~~~gi~~~~~ 490 (598)
T COG1042 455 KKLRET----PVFE--GG---------------GGTTLDEPEAKEL--LEAYGIPVPAT 490 (598)
T ss_pred HhhccC----cccc--cC---------------CccccCchhhhhH--HHHhcCccccc
Confidence 999988 2267 22 6677777777775 56677777665
No 148
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=79.94 E-value=3.2 Score=46.12 Aligned_cols=79 Identities=32% Similarity=0.374 Sum_probs=61.0
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHH
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALK 438 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r 438 (806)
.|++|-.+|.+.. .+.+.+ .++++ +..+.|+-...||++|.|+|.++ +||.-- +...++++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~~~-----~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIGGD-----DIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---cccHH-----HHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 5999999998742 233333 33443 57889999999999999999999 666655 77889999
Q ss_pred hcCCCCCEEEEEeCcCcC
Q psy16953 439 DKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~ 456 (806)
+.+..|||+++..+-+++
T Consensus 124 ~l~~~~PV~v~v~~~AAS 141 (317)
T COG0616 124 RLRAKKPVVVSVGGYAAS 141 (317)
T ss_pred HHhhcCCEEEEECCeecc
Confidence 988777999998776665
No 149
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=79.82 E-value=3.7 Score=50.48 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=46.5
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.-.|++|.+++. |++ ++.+ .++.+++.+.+.-+...++||||.-.-.++|=. .++-..+.+|+++.++.
T Consensus 477 ~~TK~iL~~aGI--PVP-~g~~-----~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVs-i~~~~~~~eel~~Al~~ 545 (737)
T TIGR01435 477 VVTKKVLAEAGF--RVP-FGDE-----FSSQALALEAFSLFENKAIVVKPKSTNYGLGIT-IFKNGFTLEDFQEALNI 545 (737)
T ss_pred HHHHHHHHHcCc--CCC-CEEE-----ECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeE-EecCcCCHHHHHHHHHH
Confidence 347899999988 887 5554 356677766666565579999999877776532 11112357888777664
No 150
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=79.56 E-value=3.2 Score=46.94 Aligned_cols=65 Identities=15% Similarity=0.013 Sum_probs=44.6
Q ss_pred hHHHHH-hhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 11 GKDIIN-RNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 11 ~K~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
.|++|. +++. |++ +... .+|.+++.+...-++ .|+||||....+++| |.+..|.+|+++++++.+
T Consensus 117 ~k~~l~~~~gi--p~p-~~~~-----~~s~~~l~~~~~~~g-~P~VvKP~~g~~s~G----v~~v~~~~el~~~~~~~~ 182 (395)
T PRK09288 117 IRRLAAEELGL--PTS-PYRF-----ADSLEELRAAVEEIG-YPCVVKPVMSSSGKG----QSVVRSPEDIEKAWEYAQ 182 (395)
T ss_pred HHHHHHHhCCC--CCC-CceE-----ECCHHHHHHHHHhcC-CCEEEEeCCCcCCCC----eEEECCHHHHHHHHHHHH
Confidence 445553 5555 555 4444 567888766555555 699999997766664 667778999998888754
No 151
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=79.09 E-value=5.8 Score=43.43 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=59.3
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCC--cccccccceeecccccccHHHHhc--cCCCeeEEE
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDH--KLKFYWGHKEVLIPVYKKMEDAMS--KNKDADVLV 276 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~--~~~~~~g~~~i~~p~y~sv~daip--~~~Dlaviv 276 (806)
+|.|+|.+. ...++|.+.|| .|+-.|.+. -+++ .+.+...+.|++++.. ..+|+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-----------~V~~~dr~~~~~~~l----~~~g~~~~~s~~~~~~~~~~~dvIi~- 65 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-----------DCVGYDHDQDAVKAM----KEDRTTGVANLRELSQRLSAPRVVWV- 65 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-----------EEEEEECCHHHHHHH----HHcCCcccCCHHHHHhhcCCCCEEEE-
Confidence 588999763 34788989887 344344431 1001 0113455677777322 23565444
Q ss_pred eecCChhhHHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 277 NFASLRSAYDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++ |...++++++++... .-..++|-.+...+....++.+.+++.|++++.
T Consensus 66 -~v-p~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 66 -MV-PHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred -Ec-CchHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 45 545888888877521 112345545444444555556666778877654
No 152
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=78.71 E-value=9 Score=41.93 Aligned_cols=108 Identities=7% Similarity=-0.021 Sum_probs=66.3
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+|.++|.+. ...++|++.|| .=.+|=.+|+. +.+ ...+...+.|..+ +.+..|+.++ +++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~---------~v~v~~~~~~~-~~~----~~~g~~~~~s~~~-~~~~advVi~--~v~ 64 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH---------QLHVTTIGPVA-DEL----LSLGAVSVETARQ-VTEASDIIFI--MVP 64 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC---------eEEEEeCCHhH-HHH----HHcCCeecCCHHH-HHhcCCEEEE--eCC
Confidence 578899763 34789999997 11233333331 111 1234566788888 4566666555 555
Q ss_pred ChhhHHHHHHH---hc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 281 LRSAYDSTIET---LG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 281 ~~~~~~~~le~---~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
....+.+++.. +. ...-..++|-.+.......+++.+.++++|++++-
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 55566666532 11 11123577778888888888999999998877664
No 153
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=78.63 E-value=5.5 Score=43.51 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=42.7
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ +..+ ..+.+++.+..++++..++||||-.--+++| |.+..+.++++.+++..
T Consensus 101 ~~~~~~l~~~gi--p~P-~t~~-----~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~G----V~~v~~~~~~~~~~~~~ 167 (300)
T PRK10446 101 LRSMQLLARQGI--DLP-VTGI-----AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIG----VVLAETRQAAESVIDAF 167 (300)
T ss_pred HHHHHHHHHcCC--CCC-CEEE-----eCCHHHHHHHHHHhCCCCEEEEECCCCCccc----EEEEcCHHHHHHHHHHH
Confidence 345677777766 655 4444 3466766665555544699999987644443 44556778888777654
No 154
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=78.62 E-value=4.6 Score=48.20 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=46.3
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceee-cCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKV-NTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l-~~~~~e~~~~~~~ 86 (806)
-+..|++|.+++. |++ +..+ ..+.+++.+...-++ ++||||-.--++|| |.+ ..|.++++++++.
T Consensus 298 K~~tk~lL~~aGI--pVP-~~~~-----~~~~~~~~~~~~~~G--~vVVKP~~G~~G~G----v~v~v~~~~eL~~a~~~ 363 (547)
T TIGR03103 298 KRLTRRLVSEAGL--QVP-EQQL-----AGNGEAVEAFLAEHG--AVVVKPVRGEQGKG----ISVDVRTPDDLEAAIAK 363 (547)
T ss_pred HHHHHHHHHHcCc--CCC-CEEE-----ECCHHHHHHHHHHhC--CEEEEECCCCCCcC----eEEecCCHHHHHHHHHH
Confidence 3567899999988 777 5555 456777766555565 69999976544444 333 4688999888776
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
..
T Consensus 364 a~ 365 (547)
T TIGR03103 364 AR 365 (547)
T ss_pred HH
Confidence 54
No 155
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.53 E-value=19 Score=37.80 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=73.9
Q ss_pred ceEEEEcc---ChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGM---QTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~---~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+++|+.- +.|..+||...+|. .++.+--.+ |.- ..+--..-++.+|..||.+++|-+.
T Consensus 2 mki~vlt~g~yG~R~~~nl~~~~f~-----~~~v~v~~~--Pe~-----------~~~fie~P~~~Lp~~~e~Di~va~~ 63 (224)
T COG1810 2 MKILVLTDGEYGKRAVNNLACKGFK-----NQFVAVKEY--PEE-----------LPDFIEEPEDLLPKLPEADIVVAYG 63 (224)
T ss_pred cEEEEEeeccchHHHHHhHhhhccc-----cceEEEEec--ccc-----------ccchhhCHHHhcCCCCCCCEEEEec
Confidence 36677764 56889999977761 222222222 221 1111222344466656777765565
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
..++-..++.+.+...|++++| +.++=++...++|.+.+.+.|+.+.=|--+--+.|.
T Consensus 64 lHPDl~~~L~e~~~~~~~~alI-vp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~ 121 (224)
T COG1810 64 LHPDLLLALPEKAAEGGVKALI-VPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPN 121 (224)
T ss_pred cCccHHHHHHHHHHhCCccEEE-EecCCChhHHHHHHHHhhhcceeeecCCccccCCCC
Confidence 5666667777776668888555 566667788899999999999999888766555544
No 156
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=78.36 E-value=5.4 Score=41.34 Aligned_cols=53 Identities=34% Similarity=0.432 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEcc-CC-cch-HHHHHHHHhcCCCCCEEEEEeCcCc
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEV-GG-VEE-YEVCAALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Ei-gg-~~d-~~f~~a~r~~~~~KPVV~lk~Grs~ 455 (806)
+.+.|+-+.+|+++++|++.+.- || +.. .++.+++++.+.+|||+++.-|.+.
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~ 73 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAA 73 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 55667778889999999999982 22 233 6677888776567999999987765
No 157
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=77.54 E-value=3.6 Score=40.54 Aligned_cols=67 Identities=15% Similarity=0.014 Sum_probs=45.2
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+--|+++.+++. |++ +... .++.+++.+...-++ .++||||.--.+. -+|.+..|.+|+++++++..
T Consensus 6 ~~~~~~~~~~gv--~~P-~~~~-----~~~~~~~~~~~~~~~-~p~vvKp~~g~gs----~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 6 YRMRELLKKAGV--PVP-KTRI-----VDSEEELRAFAEDLG-FPFVVKPVDGSGS----RGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp HHHHHHHHHHTS-------EEE-----ECSHHHHHHHHHHSS-SSEEEEESS-STT----TT-EEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc--CCC-CEEE-----ECCHHHHHHHHHHcC-CCEEEEcCccccC----CCEEEeCCHHHHHHHHHHHH
Confidence 345788888888 666 4444 566777777666666 6999999987554 34666669999999988773
No 158
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=77.41 E-value=4.4 Score=40.81 Aligned_cols=55 Identities=40% Similarity=0.407 Sum_probs=37.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEcc-CC-cch-HHHHHHHHhcC-CCCCEEEEEeCcCcC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEV-GG-VEE-YEVCAALKDKR-ITKPLVAWCIGTCAS 456 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Ei-gg-~~d-~~f~~a~r~~~-~~KPVV~lk~Grs~~ 456 (806)
++.+.++.+.+||++|+|++.+.- |+ +.. ..+.+++++.. .+||||++.-|.+..
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 455666677789999999999872 22 222 34444555543 689999998877664
No 159
>PRK10206 putative oxidoreductase; Provisional
Probab=77.41 E-value=7 Score=43.76 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=46.0
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
.++|.++++.+. .+|+++++|..++....+-+++++. +|. .++|==. ....+..++|++.|+++|+.+
T Consensus 50 ~~~~~~~~ell~-~~~iD~V~I~tp~~~H~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 50 IHFTSDLDEVLN-DPDVKLVVVCTHADSHFEYAKRALE-AGK-NVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred CcccCCHHHHhc-CCCCCEEEEeCCchHHHHHHHHHHH-cCC-cEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 689999999554 4455555556666666666666665 774 4544211 333477889999999999876
No 160
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=77.12 E-value=8.3 Score=37.55 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHhccCCCeeEEEeecC-ChhhHHHHHHHhcCCCCCEEEEEcCC---CCHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 262 MEDAMSKNKDADVLVNFAS-LRSAYDSTIETLGFPQIRSIAIIAEG---IPENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 262 v~daip~~~Dlavivi~~~-~~~~~~~~le~~~~~gvk~~viis~G---f~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
++.|..+.+|+..+-.... .-.....+++.+.++|.+...++-+| ++++++.+..+.+++.|+ ++.||.+
T Consensus 45 v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 45 IKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred HHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 4454556777654421111 22346788899988998777776777 577888877777888886 6888875
No 161
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=76.90 E-value=4 Score=48.00 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=40.3
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFK 78 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~ 78 (806)
.+..|++|.+|++ |.+.+... .+|++++.+..+.+ .++||||+-+.+++| |.+..|.+
T Consensus 110 K~~~K~~l~~~gI--pt~~~~~~-----~~~~~ea~~~~~~~--~PvVVKP~~~aggkG----V~iv~~~~ 167 (486)
T PRK05784 110 KVWARELMWKYSI--PGRLRYKV-----FYDVEEAAKFIEYG--GSVAIKPARQAGGKG----VKVIADLQ 167 (486)
T ss_pred HHHHHHHHHHcCc--CCCccceE-----eCCHHHHHHHHhhc--CCEEEeeCCCCCCCC----EEEECChh
Confidence 3567888999877 54322333 46788877655443 399999999998874 66777765
No 162
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=76.82 E-value=4 Score=47.26 Aligned_cols=68 Identities=12% Similarity=-0.061 Sum_probs=46.2
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ |... ...++++++.....-++ .++||||...-++| +|.+..+.+|+++.+++.
T Consensus 117 ~~~r~~l~~~gi--p~p-p~~~---~~~~~~~e~~~~~~~ig-~PvvvKP~~g~gs~----Gv~~v~~~~el~~~~~~~ 184 (449)
T TIGR00514 117 VSAIETMKKAGV--PCV-PGSD---GLVEDEEENVRIAKRIG-YPVIIKATAGGGGR----GMRVVREPDELVKSISMT 184 (449)
T ss_pred HHHHHHHHHCCC--CCC-CCcc---cCcCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ccEEECCHHHHHHHHHHH
Confidence 456777888876 554 3321 01567888776655565 69999999876554 455666899999888754
No 163
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=76.05 E-value=7.1 Score=41.77 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=38.5
Q ss_pred hHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHH
Q psy16953 11 GKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 11 ~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
.+++|.+++. |++ +... ..+.+++.....-++ .++||||..--+++| |.+..+.+++++.++
T Consensus 91 ~~~~l~~~gi--p~P-~t~~-----~~~~~~~~~~~~~~~-~P~vvKP~~g~~g~g----v~~v~~~~~l~~~~~ 152 (280)
T TIGR02144 91 TYLKLAKAGV--PTP-RTYL-----AFDREAALKLAEALG-YPVVLKPVIGSWGRL----VALIRDKDELESLLE 152 (280)
T ss_pred HHHHHHHCCc--CCC-CeEe-----eCCHHHHHHHHHHcC-CCEEEEECcCCCcCC----EEEECCHHHHHHHHH
Confidence 4456666666 555 3333 345666655443444 589999988544443 666678888887664
No 164
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=76.05 E-value=12 Score=41.75 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=64.6
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCccc-ccccceeecccc-cccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK-FYWGHKEVLIPV-YKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~-~~~g~~~i~~p~-y~sv~daip~~~Dlaviv 276 (806)
.+|+|+|+++.. ++.|.+..| +-..-.++.-.+..+++ .-|+.+.+.++- ..++.+ . +.+|+++.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f------~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~-~-~~~Divf~- 72 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF------PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFV-F-SDVDIVFF- 72 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC------CcceEEEEecccccCCccccccCccccCccccccccc-c-ccCCEEEE-
Confidence 479999999876 334444354 22224455555566555 445544444333 233333 2 23555443
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEE-cCCC----------CHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAII-AEGI----------PENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~vii-s~Gf----------~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
+.+.+.-.+..+.+.+.|+ +||= |+-| ||--.+.|.+.-+ +|.-|.+|||.-+
T Consensus 73 --~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst~ 136 (334)
T COG0136 73 --AAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCSTI 136 (334)
T ss_pred --eCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CCCEEECCChHHH
Confidence 6677777888888888883 3332 2333 2222233555544 5578899999543
No 165
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=75.68 E-value=1.5 Score=44.75 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=36.8
Q ss_pred hHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 11 GKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 11 ~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
...+|++++. |+| +..+ ..+.+++.+..+.++..++|+||.. +.+|+ |..++ .+.+++++.+..
T Consensus 7 ~~~~l~~~gi--pvP-~t~~-----~~~~~~~~~~~~~~~~~p~ViKp~~--g~~G~-gV~~i-~~~~~~~~~l~~ 70 (190)
T PF08443_consen 7 TLQLLAKAGI--PVP-ETRV-----TNSPEEAKEFIEELGGFPVVIKPLR--GSSGR-GVFLI-NSPDELESLLDA 70 (190)
T ss_dssp HHHHHHHTT--------EEE-----ESSHHHHHHHHHHH--SSEEEE-SB----------EEE-ESHCHHHHHHH-
T ss_pred HHHHHHHCCc--CCC-CEEE-----ECCHHHHHHHHHHhcCCCEEEeeCC--CCCCC-EEEEe-cCHHHHHHHHHH
Confidence 3578899988 777 5555 6788999888888865799999954 44433 34444 577888887654
No 166
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=75.66 E-value=5.2 Score=41.36 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=39.7
Q ss_pred CHHHHHHHhhcCCCccEEEEEEcc-CC-cch-HHHHHHHHhcC-CCCCEEEEEeCcCc
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEV-GG-VEE-YEVCAALKDKR-ITKPLVAWCIGTCA 455 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Ei-gg-~~d-~~f~~a~r~~~-~~KPVV~lk~Grs~ 455 (806)
++.+.|+.+.+||++++|++++.- |+ +.. ..+.+++++.+ .+||||++.-|.+.
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 467778888899999999999983 22 222 45556666654 58999999987765
No 167
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=75.42 E-value=9.3 Score=37.61 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=44.3
Q ss_pred ccccccHHH----HhccCCCeeEEEeecCC---hhhHHHHHHHhcCCCCCEEEEEcCCC-CHHHHHHHHHHHHHcCC-eE
Q psy16953 256 IPVYKKMED----AMSKNKDADVLVNFASL---RSAYDSTIETLGFPQIRSIAIIAEGI-PENMTRKLNLLAKEKGV-SI 326 (806)
Q Consensus 256 ~p~y~sv~d----aip~~~Dlavivi~~~~---~~~~~~~le~~~~~gvk~~viis~Gf-~E~~~~~l~~~a~~~gi-ri 326 (806)
.+.+.|-.| |+.+.+|..++ +... ...++.++|+|.++|+..+.++.+|. |..+.+++. ++|+ ++
T Consensus 46 ~g~~~tp~e~v~aA~~~dv~vIgv--Ssl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~----~~G~~~i 119 (143)
T COG2185 46 LGLFQTPEEAVRAAVEEDVDVIGV--SSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELK----EMGVDRI 119 (143)
T ss_pred cCCcCCHHHHHHHHHhcCCCEEEE--EeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHH----HhCccee
Confidence 344444444 34556655444 4333 34567899999999999999778774 556655544 3454 77
Q ss_pred EccCc
Q psy16953 327 IGPAT 331 (806)
Q Consensus 327 iGPN~ 331 (806)
++|.+
T Consensus 120 f~pgt 124 (143)
T COG2185 120 FGPGT 124 (143)
T ss_pred eCCCC
Confidence 88754
No 168
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=75.04 E-value=5.2 Score=41.61 Aligned_cols=54 Identities=35% Similarity=0.371 Sum_probs=38.5
Q ss_pred CHHHHHHHhhcCCCccEEEEEEc-cCCc-ch-HHHHHHHHhcC-CCCCEEEEEeCcCc
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGE-VGGV-EE-YEVCAALKDKR-ITKPLVAWCIGTCA 455 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~E-igg~-~d-~~f~~a~r~~~-~~KPVV~lk~Grs~ 455 (806)
++.+.|+.+.+||++|+|++.+. .|+- .. .++.+++++.+ .+||||++.-|.+.
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 46778888999999999999877 2222 22 34555554443 58999999987764
No 169
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=74.99 E-value=9.2 Score=41.55 Aligned_cols=100 Identities=16% Similarity=0.026 Sum_probs=61.7
Q ss_pred hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCChhhHHHHH---
Q psy16953 213 RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTI--- 289 (806)
Q Consensus 213 r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~l--- 289 (806)
...++|++.|| .|+-.|++.....- -.+.+.....|..++ -+..|+.++ ++++...+.+++
T Consensus 10 ~mA~~L~~~G~-----------~V~v~dr~~~~~~~--l~~~g~~~~~s~~~~-~~~advVil--~vp~~~~~~~v~~g~ 73 (288)
T TIGR01692 10 PMAANLLKAGH-----------PVRVFDLFPDAVEE--AVAAGAQAAASPAEA-AEGADRVIT--MLPAGQHVISVYSGD 73 (288)
T ss_pred HHHHHHHhCCC-----------eEEEEeCCHHHHHH--HHHcCCeecCCHHHH-HhcCCEEEE--eCCChHHHHHHHcCc
Confidence 34678888887 35545554210000 011235567788884 455566544 565556777776
Q ss_pred HHhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 290 ETLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 290 e~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+.+. ...-..++|..+++.....+++.+.++++|++++.
T Consensus 74 ~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 74 EGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred chHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 3332 22233577778899988888999999999988765
No 170
>PLN02712 arogenate dehydrogenase
Probab=74.97 E-value=15 Score=44.92 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...+|.|+|++. ...+.|.+.|+ .|+-++++...+. ..+.|+..+.+..+++....|+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~-----------~V~~~dr~~~~~~---a~~~Gv~~~~~~~el~~~~aDvVIL-- 431 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH-----------TVLAYSRSDYSDE---AQKLGVSYFSDADDLCEEHPEVILL-- 431 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC-----------EEEEEECChHHHH---HHHcCCeEeCCHHHHHhcCCCEEEE--
Confidence 567899999762 34667777775 4665665421010 1223556788888843334677666
Q ss_pred ecCChhhHHHHHHHhc
Q psy16953 278 FASLRSAYDSTIETLG 293 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~ 293 (806)
++|......+++++.
T Consensus 432 -avP~~~~~~vi~~l~ 446 (667)
T PLN02712 432 -CTSILSTEKVLKSLP 446 (667)
T ss_pred -CCChHHHHHHHHHHH
Confidence 667778888888875
No 171
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=74.92 E-value=8.5 Score=40.51 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=57.8
Q ss_pred HHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEccCccccccC
Q psy16953 262 MEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKP 337 (806)
Q Consensus 262 v~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGPN~~Gii~p 337 (806)
.++.+|+-+|.+++|....-++...++.+.+.+.|++++|+ .++-+. .+.++|.+.+.+.|+.+.-|.-+--+.+
T Consensus 42 pee~Lp~i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIv-p~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 42 PEEYLPKIPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIV-PSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred hHHHccCCCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEE-ecCCCccchHHHHHHHHHhcCceeecCccccccCC
Confidence 34446666777777666777788888999998899997755 555555 6788999999999999999987665554
No 172
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=74.20 E-value=5.2 Score=46.12 Aligned_cols=68 Identities=3% Similarity=-0.152 Sum_probs=46.5
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ |.... ..++++++.+...-++ .|+||||...-+++ +|.+..+.+|+++++++.
T Consensus 117 ~~~k~~l~~~gI--p~p-~~~~~---~~~~~~e~~~~~~~~~-~P~VvKP~~g~gs~----Gv~iv~~~~el~~a~~~~ 184 (450)
T PRK06111 117 IEARRAMQAAGV--PVV-PGITT---NLEDAEEAIAIARQIG-YPVMLKASAGGGGI----GMQLVETEQELTKAFESN 184 (450)
T ss_pred HHHHHHHHHCCC--CCC-CCcCc---CcCCHHHHHHHHHHhC-CCEEEEeCCCCCCc----eEEEECCHHHHHHHHHHH
Confidence 455677777766 554 33111 1367888766555555 69999999887665 466777899999988763
No 173
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=73.95 E-value=9.4 Score=48.86 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.5
Q ss_pred cccHHHHhc--cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 259 YKKMEDAMS--KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 259 y~sv~daip--~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
|.+.++... ..+|++|+ +.|...-..+.++|.+.|+. +++.+ +-.+.+++|.+.|+++|++++ |. +| ++
T Consensus 636 v~D~e~L~~~v~~~DaVIs---alP~~~H~~VAkaAieaGkH-vv~ek--y~~~e~~~L~e~Ak~AGV~~m-~e-~G-lD 706 (1042)
T PLN02819 636 VSDSESLLKYVSQVDVVIS---LLPASCHAVVAKACIELKKH-LVTAS--YVSEEMSALDSKAKEAGITIL-CE-MG-LD 706 (1042)
T ss_pred cCCHHHHHHhhcCCCEEEE---CCCchhhHHHHHHHHHcCCC-EEECc--CCHHHHHHHHHHHHHcCCEEE-EC-Cc-cC
Confidence 555555211 24777666 66777778899999889976 44433 666788899999999998876 33 34 77
Q ss_pred CC
Q psy16953 337 PG 338 (806)
Q Consensus 337 p~ 338 (806)
|+
T Consensus 707 PG 708 (1042)
T PLN02819 707 PG 708 (1042)
T ss_pred HH
Confidence 76
No 174
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=72.39 E-value=7.1 Score=42.76 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=40.8
Q ss_pred hHHHHHhhCCCCcccccccccccccCCCHHHHHh--ccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 11 GKDIINRNLDPNTAAAKCRFAAVKEETSWAELVR--NEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 11 ~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
-|++|.+++. |++ +... .++.+++.+ ...+++ .++|+||..- .|..| |.+..|.+|+++++.+..
T Consensus 115 ~~~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~~~-~P~viKP~~g---~~s~g-v~~v~~~~el~~~~~~~~ 181 (326)
T PRK12767 115 TYEFLKENGI--PTP-KSYL-----PESLEDFKAALAKGELQ-FPLFVKPRDG---SASIG-VFKVNDKEELEFLLEYVP 181 (326)
T ss_pred HHHHHHHcCC--CCC-CEEc-----ccCHHHHHhhhhcccCC-CCEEEEeCCC---CCccC-eEEeCCHHHHHHHHHhCC
Confidence 4456666655 444 2222 456777765 335555 6999999653 34344 555568899999998754
No 175
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=71.85 E-value=16 Score=39.71 Aligned_cols=109 Identities=9% Similarity=0.076 Sum_probs=62.0
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...+++.+.|+ +|+-.+++......+ ...+.....+.++ +.+..|+.++ ++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-----------~v~~~d~~~~~~~~~--~~~g~~~~~~~~e-~~~~~d~vi~--~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-----------SLVVYDRNPEAVAEV--IAAGAETASTAKA-VAEQCDVIIT--ML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-----------eEEEEcCCHHHHHHH--HHCCCeecCCHHH-HHhcCCEEEE--eC
Confidence 3688999763 34778888887 344455442100000 1123566778888 4555666555 55
Q ss_pred CChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 280 SLRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 280 ~~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+....+..++ +.+.. ..-..+++-.+.+.....+++.+.+++.|++++
T Consensus 67 p~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~ 118 (296)
T PRK11559 67 PNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEML 118 (296)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 5555566665 22221 122346665677777777788887777665543
No 176
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=71.48 E-value=11 Score=40.00 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=38.6
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+++|.+++. |++ +..+ .++.+++.+....++ .++||||..-.+++ | |.+..+.+++++.++..
T Consensus 93 ~~~l~~~gi--~~P-~t~~-----~~~~~~~~~~~~~~~-~p~vvKP~~g~~g~---g-v~~i~~~~~l~~~~~~~ 155 (277)
T TIGR00768 93 SQLLAKAGL--PQP-RTGL-----AGSPEEALKLIEEIG-FPVVLKPVFGSWGR---L-VSLARDKQAAETLLEHF 155 (277)
T ss_pred HHHHHHCCC--CCC-CEEE-----eCCHHHHHHHHHhcC-CCEEEEECcCCCCC---c-eEEEcCHHHHHHHHHHH
Confidence 455666655 554 3333 356777766555565 69999998855543 3 44445678887766543
No 177
>KOG2741|consensus
Probab=70.99 E-value=13 Score=41.65 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=52.4
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
.++|.|.++ +-+.+++++++|..+-++.++-++-++. +| |.+.|=-. ....++.++|+++|+++|+-++
T Consensus 58 ~k~y~syEe-Lakd~~vDvVyi~~~~~qH~evv~l~l~-~~-K~VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 58 PKAYGSYEE-LAKDPEVDVVYISTPNPQHYEVVMLALN-KG-KHVLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CccccCHHH-HhcCCCcCEEEeCCCCccHHHHHHHHHH-cC-CcEEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 367899999 7888888889888888888888888876 33 34443211 4555788999999999997665
No 178
>PRK07206 hypothetical protein; Provisional
Probab=70.88 E-value=7.5 Score=44.30 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhc---cccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRN---EPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
|++|.+++. |++ +... ..+.+++.+. ..+. ..++||||-.-.|.+ +|.+..|.+|+++++++.+
T Consensus 113 r~~l~~~gi--~~p-~~~~-----~~~~~e~~~~~~~~g~~-~~P~VvKP~~g~gs~----gv~~v~~~~el~~~~~~~~ 179 (416)
T PRK07206 113 INALAEAGL--PAA-RQIN-----TADWEEAEAWLRENGLI-DRPVVIKPLESAGSD----GVFICPAKGDWKHAFNAIL 179 (416)
T ss_pred HHHHHHcCC--Ccc-cEEe-----cCCHHHHHHHHHhcCCC-CCCEEEeCCCCCCCC----CEEEeCCHHHHHHHHHHHH
Confidence 445555555 444 3333 3455665443 3333 249999998766654 5777789999999999876
Q ss_pred C
Q psy16953 89 G 89 (806)
Q Consensus 89 g 89 (806)
+
T Consensus 180 ~ 180 (416)
T PRK07206 180 G 180 (416)
T ss_pred h
Confidence 4
No 179
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=70.49 E-value=5.1 Score=45.75 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=45.8
Q ss_pred hhcccccccccceeccccccccc--cccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHh
Q psy16953 535 RELGLIRKPASFMTSICDERGQE--LLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSL 600 (806)
Q Consensus 535 ~~~g~~r~~~~~~t~i~d~~~~~--i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~L 600 (806)
+..| ++...+..|.|+...++. +.||||+|.++.. +-+|-++.+++|+|+.|+..+.+.+..-+
T Consensus 16 ~~~G-l~~v~~~~t~is~id~~~g~L~yrGy~i~dla~-~~~feev~~LLl~G~lPt~~el~~~~~~~ 81 (390)
T COG0372 16 YDPG-LEGVAACETAISYIDGDGGILRYRGYDIEDLAE-KSSFEEVAYLLLYGELPTKAELAAFFAKL 81 (390)
T ss_pred cCCc-ccccceeeeeeeEecCCCceEEECCccHHHHHh-hcCHHHHHHHHHcCcCCChHHHHHHHHHH
Confidence 3456 456667777777765544 8999999998876 47899999999999988665543333333
No 180
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=70.17 E-value=6.7 Score=47.28 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~ 435 (806)
..++|++|.-+|.+...- +. .-.+|.+ ++.+.|+...+||++|+|++.+. .||-.. ..+.+
T Consensus 306 ~~~~vavI~~~G~I~~~~-------~~----~~~~~~~-----~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGR-------DT----EGNTGGD-----TVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCCC-------Cc----ccccCHH-----HHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence 467899999999874321 10 0012333 46788999999999999999998 344222 45666
Q ss_pred HHHhcC-CCCCEEEEEeCcCcC
Q psy16953 436 ALKDKR-ITKPLVAWCIGTCAS 456 (806)
Q Consensus 436 a~r~~~-~~KPVV~lk~Grs~~ 456 (806)
++++.+ .+||||+...|.++.
T Consensus 370 ~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred HHHHHHhCCCcEEEEECCcccc
Confidence 666654 569999998776654
No 181
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=69.78 E-value=8 Score=43.47 Aligned_cols=66 Identities=12% Similarity=-0.052 Sum_probs=44.3
Q ss_pred chHHHH-HhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDII-NRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
.-|+++ .+++. |++ +..+ .++.+++.+...-++ .|+||||-.--++| +|.+..|.+|+++++++..
T Consensus 103 ~~~~~~~~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~VvKP~~g~~s~----gv~~v~~~~el~~~~~~~~ 169 (380)
T TIGR01142 103 GIRRLAAEELGL--PTS-RYMF-----ADSLDELREAVEKIG-YPCVVKPVMSSSGK----GQSVVRGPEDIEKAWEYAQ 169 (380)
T ss_pred HHHHHHHHHCCC--CCC-CceE-----eCCHHHHHHHHHHcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHHHH
Confidence 345553 66766 665 4444 566777766555565 69999998655544 3667778899988887754
No 182
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=69.77 E-value=22 Score=41.72 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=62.1
Q ss_pred EEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCccccccccee--e--cccccccHHHHhc--cCCCeeEE
Q psy16953 205 AIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKE--V--LIPVYKKMEDAMS--KNKDADVL 275 (806)
Q Consensus 205 v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~--i--~~p~y~sv~daip--~~~Dlavi 275 (806)
|-|+|++ ....+||++.|| .|+-.|.+...-.-+ .+. . ++..+.++++.+. +.+|+.++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~-----------~V~v~drt~~~~~~l-~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGF-----------TVSVYNRTPEKTDEF-LAEHAKGKKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCC-----------eEEEEeCCHHHHHHH-HhhccCCCCceecCCHHHHHhhcCCCCEEEE
Confidence 5678865 445789999998 455555542100000 000 0 1456778888432 24665444
Q ss_pred EeecCChhhHHHHHHHhcCC-CCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 276 VNFASLRSAYDSTIETLGFP-QIRSIAIIAE-GIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~-gvk~~viis~-Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
++++...++++++.+... .-..+||=.+ ..++..+ +..+.+++.|+++++--
T Consensus 70 --~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~-~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 70 --MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTE-RRYKELKAKGILFVGSG 123 (467)
T ss_pred --ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHH-HHHHHHHhcCCEEEcCC
Confidence 676768888888876521 1223444444 3444434 44555677888888653
No 183
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=69.41 E-value=18 Score=39.64 Aligned_cols=109 Identities=11% Similarity=-0.018 Sum_probs=64.0
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
++|.|+|.+. ...++|.+.|| .|+-+|++...-..| .+.+.....|..+ +.+..|+.++ ++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-----------~V~v~d~~~~~~~~~--~~~g~~~~~s~~~-~~~~aDvVi~--~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-----------QLQVFDVNPQAVDAL--VDKGATPAASPAQ-AAAGAEFVIT--ML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-----------eEEEEcCCHHHHHHH--HHcCCcccCCHHH-HHhcCCEEEE--ec
Confidence 3688999763 34688888887 455555542100000 0124566778888 4455565444 56
Q ss_pred CChhhHHHHHHHhc----CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 280 SLRSAYDSTIETLG----FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 280 ~~~~~~~~~le~~~----~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
++...+..++.... ...-..++|-.+-+.....+++.+.+.++|++++
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 55556777764321 1112335555665666677788888888887765
No 184
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=69.33 E-value=28 Score=40.82 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=62.8
Q ss_pred ChhHHHhhhhcccccccCCCcccceeEeecCCCc--cccc--ccceeecccccccHHHHhcc--CCCeeEEEeecCChhh
Q psy16953 211 QTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFY--WGHKEVLIPVYKKMEDAMSK--NKDADVLVNFASLRSA 284 (806)
Q Consensus 211 ~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~--~g~~~i~~p~y~sv~daip~--~~Dlavivi~~~~~~~ 284 (806)
+....+||++.|| .|.-.|.+.. +++. .|. .-+...+.|++|++.. .+|+.++ +++...+
T Consensus 2 G~~mA~nL~~~G~-----------~V~v~nrt~~~~~~l~~~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~--mv~~g~~ 67 (459)
T PRK09287 2 GKNLALNIASHGY-----------TVAVYNRTPEKTDEFLAEEGK-GKKIVPAYTLEEFVASLEKPRKILL--MVKAGAP 67 (459)
T ss_pred cHHHHHHHHhCCC-----------eEEEECCCHHHHHHHHHhhCC-CCCeEeeCCHHHHHhhCCCCCEEEE--ECCCchH
Confidence 4456788999998 3444454321 1110 000 0135678899995443 4766555 6767778
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 285 YDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 285 ~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
++++++.+... .-..++|=.+.....+.+++.+.+++.|+++++--
T Consensus 68 v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdap 114 (459)
T PRK09287 68 VDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMG 114 (459)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecC
Confidence 88888776422 22345555554444566666677888999998763
No 185
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=69.14 E-value=9 Score=41.78 Aligned_cols=72 Identities=14% Similarity=0.024 Sum_probs=44.0
Q ss_pred chhchHHHHHhhCCCCcccccccccccc-cCCCHHHHH--hccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVK-EETSWAELV--RNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
.-+..|++|.+++. |++ +..+ ++ ...+.+++. ....-++ .++||||..--+.+| |.+..|.+|++++
T Consensus 105 dK~~~~~~l~~~gi--p~p-~~~~--~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~~~~s~G----v~~v~~~~el~~~ 174 (315)
T TIGR01205 105 DKLLTKLLWKALGL--PTP-DYIV--LTQNRASADELECEQVAEPLG-FPVIVKPAREGSSVG----VSKVKSEEELQAA 174 (315)
T ss_pred CHHHHHHHHHHCCC--CCC-CEEE--EecccccchhhhHHHHHHhcC-CCEEEEeCCCCCccC----EEEECCHHHHHHH
Confidence 34566788888877 666 4443 22 122223321 1112233 699999988655543 6677799999999
Q ss_pred HHHHc
Q psy16953 84 ISERM 88 (806)
Q Consensus 84 ~~~~~ 88 (806)
+++..
T Consensus 175 ~~~~~ 179 (315)
T TIGR01205 175 LDEAF 179 (315)
T ss_pred HHHHH
Confidence 88765
No 186
>PRK10949 protease 4; Provisional
Probab=69.13 E-value=7.6 Score=47.07 Aligned_cols=81 Identities=35% Similarity=0.442 Sum_probs=56.3
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~ 435 (806)
..+.||+|.-+|.+... ...-| .+|.+ ++.+.|+...+||++|+|++-+. .||-.- +.+.+
T Consensus 324 ~~~~Iavi~~~G~I~~g------~~~~g-----~~~~~-----~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~ 387 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG------EETPG-----NVGGD-----TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 387 (618)
T ss_pred CCCeEEEEEEEEEEcCC------CCcCC-----CcCHH-----HHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence 35689999999988431 00111 12222 57888999999999999999999 444333 56777
Q ss_pred HHHhcC-CCCCEEEEEeCcCc
Q psy16953 436 ALKDKR-ITKPLVAWCIGTCA 455 (806)
Q Consensus 436 a~r~~~-~~KPVV~lk~Grs~ 455 (806)
++++++ .+||||+.-.+-.+
T Consensus 388 ~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred HHHHHHhcCCcEEEEECCCCc
Confidence 777764 57999998655544
No 187
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=68.88 E-value=60 Score=35.78 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=85.7
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--ccc-----CCcccc
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GLK-----PGCFKI 342 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii~-----p~~~~i 342 (806)
+++.+...-..|..+...+-+-+.+.+|. +|+ +++.-.....+..++.++++.+|.|-+-+ +.. +..|++
T Consensus 41 i~lv~~D~~~~p~~a~~~a~~Li~~~~V~--aii-G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~ 117 (347)
T cd06335 41 LELVERDDRGNPARGLQNAQELAADEKVV--AVL-GGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRV 117 (347)
T ss_pred EEEEeccCCCCcHHHHHHHHHHhccCCeE--EEE-cCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEe
Confidence 44444433333444444444444434663 222 33444456677788999999999876432 211 222333
Q ss_pred ccCCCCc----ccccccCCCCCCCEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCC
Q psy16953 343 GNTGGMM----DNILHSKLYRPGSVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP 414 (806)
Q Consensus 343 g~~~g~~----~~~~~~~~~~~G~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp 414 (806)
+...... ..+.. ....--+|+++.+....+..+. +.+.+.|+-+......-. ...++...+.-+.+.
T Consensus 118 ~~~~~~~~~~~a~~~~-~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~---~~~d~s~~i~~i~~~- 192 (347)
T cd06335 118 SADDSIQAPFLVDEAV-KRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNW---GDKDMTAQLLRAKAA- 192 (347)
T ss_pred ccChHHHHHHHHHHHH-HhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecC---CCccHHHHHHHHHhC-
Confidence 2111000 00000 0112347999998876665444 444555544433333321 245677777776554
Q ss_pred CccEEEEEEccCCcch-HHHHHHHHhcCCCCCEE
Q psy16953 415 EVKMIVLLGEVGGVEE-YEVCAALKDKRITKPLV 447 (806)
Q Consensus 415 ~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV 447 (806)
...+|++..- -.+ ..|++.+++...+.|++
T Consensus 193 ~~d~v~~~~~---~~~~~~~~~~~~~~g~~~~~~ 223 (347)
T cd06335 193 GADAIIIVGN---GPEGAQIANGMAKLGWKVPII 223 (347)
T ss_pred CCCEEEEEec---ChHHHHHHHHHHHcCCCCcEe
Confidence 3456655543 344 77888888876655654
No 188
>KOG1447|consensus
Probab=68.85 E-value=15 Score=39.51 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=74.9
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----V 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----f 433 (806)
..|+||-+-...+++.+.++.+.-+|=--..|..+|+. +..--....+..+-.||.+|+|++-+ .||+-+ .. .
T Consensus 281 mDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGg-V~EdqV~~Af~ilTaDPkVk~iLvNi-FGGIVNCAtIANGi 358 (412)
T KOG1447|consen 281 MDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGG-VKEDQVYQAFKILTADPKVKAILVNI-FGGIVNCATIANGI 358 (412)
T ss_pred ccCceEEEEccchhhhheeeeEEecCCCCcceeeccCc-ccHHHHHHHhhhhccCCceeEEEEeh-hcceehhHhHhhHH
Confidence 46899999999999999999888888778899999986 12222344566788999999999988 689988 43 5
Q ss_pred HHHHHhcCCCCCEEEEEeCcCc
Q psy16953 434 CAALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~ 455 (806)
..+.++...+.|+|+---|++-
T Consensus 359 v~A~~kl~LnVPlVVRLEGTNV 380 (412)
T KOG1447|consen 359 VKACRKLELNVPLVVRLEGTNV 380 (412)
T ss_pred HHHHHhhcCCCcEEEEEcCCCH
Confidence 5677777889999997766655
No 189
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=68.72 E-value=14 Score=37.10 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCccc-CChhhHHHHH-HHHHHhhhhCCccccC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVP-SSFDTLGDII-GSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v-~~~~EL~~~~-~all~~L~~~g~i~~~ 519 (806)
.+||+|+..-|.+.. .|...+..+-=.++.++.. +.---.+.|+... -....|...+ ......+
T Consensus 92 ~~~p~Ia~v~G~a~g-~G~~la~~~D~~i~~~~~~----~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~--------- 157 (195)
T cd06558 92 LPKPVIAAVNGAALG-GGLELALACDIRIAAEDAK----FGLPEVKLGLVPGGGGTQRLPRLVGPARAREL--------- 157 (195)
T ss_pred CCCCEEEEECCeeec-HHHHHHHhCCEEEecCCCE----EechhhhcCCCCCCcHHHHHHHHhCHHHHHHH---------
Confidence 789999999988875 2444444333333333321 2222234455422 2222222222 2222222
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....|++..+|++.|++
T Consensus 158 ---~l~g~~~~a~ea~~~Glv 175 (195)
T cd06558 158 ---LLTGRRISAEEALELGLV 175 (195)
T ss_pred ---HHcCCccCHHHHHHcCCC
Confidence 234677787888888875
No 190
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=67.52 E-value=9.1 Score=44.72 Aligned_cols=68 Identities=13% Similarity=-0.023 Sum_probs=47.5
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
-+..|+++.+++. |++ |.... ..++++++.+....++ .++||||...-|+| +|.+..|.+|++++++.
T Consensus 119 K~~~r~~l~~~GI--p~~-p~~~~---~v~~~~e~~~~~~~ig-yPvvvKp~~gggg~----Gv~~v~~~~eL~~a~~~ 186 (467)
T PRK12833 119 KARARRTARRAGV--PTV-PGSDG---VVASLDAALEVAARIG-YPLMIKAAAGGGGR----GIRVAHDAAQLAAELPL 186 (467)
T ss_pred HHHHHHHHHHcCC--CCC-CCcCc---CcCCHHHHHHHHHHhC-CCEEEEECCCCCCC----eEEEECCHHHHHHHHHH
Confidence 3466788888877 554 44200 1467888877777776 79999998865544 46677789999887754
No 191
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=66.95 E-value=9.5 Score=44.09 Aligned_cols=68 Identities=10% Similarity=-0.086 Sum_probs=44.3
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ |.... ..++.+++.+...-++ .++||||..--++| +|.+..+.+|+++.+++.
T Consensus 117 ~~~r~~l~~~gI--p~p-p~~~~---~v~~~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~iv~~~~el~~~~~~~ 184 (451)
T PRK08591 117 VTAKATMKKAGV--PVV-PGSDG---PVDDEEEALAIAKEIG-YPVIIKATAGGGGR----GMRVVRTEAELEKAFSMA 184 (451)
T ss_pred HHHHHHHHHcCC--CCC-CCccc---ccCCHHHHHHHHHHcC-CCEEEEECCCCCCc----eEEEECCHHHHHHHHHHH
Confidence 445667777766 544 33211 1457777766555555 69999998765444 366777889999888764
No 192
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.41 E-value=24 Score=39.01 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=59.8
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcc--cc--------cc-cceee-c-ccccccHHHH
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL--KF--------YW-GHKEV-L-IPVYKKMEDA 265 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~--~~--------~~-g~~~i-~-~p~y~sv~da 265 (806)
..+|.|+|.+.- ...+|.+.|+ .|+-++++... .+ ++ |. .+ . +....+..++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-----------~V~~~~r~~~~~~~i~~~~~~~~~~~g~-~~~~~~~~~~~~~e~ 71 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-----------PVRLWARRPEFAAALAAERENREYLPGV-ALPAELYPTADPEEA 71 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHHHHhCcccccCCCC-cCCCCeEEeCCHHHH
Confidence 457999997732 3567778787 45555543110 00 00 10 01 0 3345677774
Q ss_pred hccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHH--HHHHHHHHHH---cCCe-EEccC
Q psy16953 266 MSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENM--TRKLNLLAKE---KGVS-IIGPA 330 (806)
Q Consensus 266 ip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~--~~~l~~~a~~---~gir-iiGPN 330 (806)
+ +..|+.++ +.|...+.++++.+. .+. .++.++.|+.... .+++.+...+ .++. +.|||
T Consensus 72 ~-~~aD~Vi~---~v~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~ 136 (328)
T PRK14618 72 L-AGADFAVV---AVPSKALRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN 136 (328)
T ss_pred H-cCCCEEEE---ECchHHHHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence 3 45676555 556667888888775 443 4666777875321 3344444433 3432 44554
No 193
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=66.27 E-value=33 Score=36.50 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=50.1
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEcc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGP 329 (806)
+.++-.++.|.+ ..+|+.|= +...+++.+.....-+.|+..+|+-.+-++| .+.+++.+.|+.+|-|+-=|
T Consensus 47 ~~~~~s~ide~~-~~~DlvVE---aAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~p 118 (255)
T COG1712 47 GRRCVSDIDELI-AEVDLVVE---AASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLP 118 (255)
T ss_pred CCCccccHHHHh-hccceeee---eCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEec
Confidence 455558899944 56776555 4455677777766666999977776666886 67788889998888666433
No 194
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.91 E-value=19 Score=34.93 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=41.0
Q ss_pred HHHHhccCCCeeEEEeecCC---hhhHHHHHHHhcCCCCCEEEEEcCC-CCHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 262 MEDAMSKNKDADVLVNFASL---RSAYDSTIETLGFPQIRSIAIIAEG-IPENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 262 v~daip~~~Dlavivi~~~~---~~~~~~~le~~~~~gvk~~viis~G-f~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
++.|+.+.+|+.++ +... ...++.+++++.++|...+.++.+| .++++.+++ ++.|+ ++++|.|
T Consensus 46 v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l----~~~Gvd~~~~~gt 114 (132)
T TIGR00640 46 ARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDEL----KEMGVAEIFGPGT 114 (132)
T ss_pred HHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHH----HHCCCCEEECCCC
Confidence 44445566776555 3322 3456788888988887666666666 555555553 45687 8888876
No 195
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=65.55 E-value=14 Score=47.78 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=47.3
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+++|.+++. |++ +... .++.+|+.+....++ .|+||||..-.|+|| +.+..|.+|+++++++..
T Consensus 674 ~~lL~~~GI--p~P-~~~~-----v~s~ee~~~~~~~ig-yPvIVKP~~~~Gg~g----v~iv~~~eeL~~~l~~a~ 737 (1050)
T TIGR01369 674 SELLDELGI--PQP-KWKT-----ATSVEEAVEFASEIG-YPVLVRPSYVLGGRA----MEIVYNEEELRRYLEEAV 737 (1050)
T ss_pred HHHHHHCCc--CCC-CeEE-----ECCHHHHHHHHHhcC-CCEEEEECCCCCCCC----eEEECCHHHHHHHHHHHH
Confidence 455666655 555 4444 578889887777776 799999988777654 566778999999999865
No 196
>PRK08462 biotin carboxylase; Validated
Probab=65.54 E-value=11 Score=43.57 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=44.7
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|++|.+++. |++ |.... ...+++++.+...-++ .|+||||...-|+|| |.+..+.+|+++++.+
T Consensus 119 ~~~r~~l~~~gI--p~p-p~~~~---~~~~~~~~~~~~~~~g-~PvvvKP~~g~gs~G----v~~v~~~~eL~~~~~~ 185 (445)
T PRK08462 119 SKAKEVMKRAGV--PVI-PGSDG---ALKSYEEAKKIAKEIG-YPVILKAAAGGGGRG----MRVVEDESDLENLYLA 185 (445)
T ss_pred HHHHHHHHHCCC--CCC-CCccc---ccCCHHHHHHHHHHcC-CCEEEEeCCCCCCCC----eEEECCHHHHHHHHHH
Confidence 345566666655 544 32210 1457888776655565 699999998877664 6666789999988754
No 197
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=65.52 E-value=22 Score=38.48 Aligned_cols=109 Identities=8% Similarity=0.003 Sum_probs=61.5
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+|.|+|.+. ...+++.+.|| +|+-++++...-..+ .+.+.....+..+++ +..|+.++ +++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~~~~-~~aDivi~--~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-----------QLHVTTIGPEVADEL--LAAGAVTAETARQVT-EQADVIFT--MVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-----------eEEEEcCCHHHHHHH--HHCCCcccCCHHHHH-hcCCEEEE--ecC
Confidence 477889763 24678888887 455555542100000 012344567887743 44566554 555
Q ss_pred ChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 281 LRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 281 ~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
....+..++ +.+.. ..-..++|-.+.......+++.+.+++.|+.++.
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 65 DSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 545555554 22221 1123455556667677777888888887777665
No 198
>KOG0237|consensus
Probab=65.48 E-value=9.5 Score=45.16 Aligned_cols=81 Identities=26% Similarity=0.131 Sum_probs=55.8
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
-+|++..+|.+ |-. +. +.-+++++|..--.-..-..+|||+|=|.-+.| |-+.++.+||-+.++++|.
T Consensus 111 fsK~fm~r~~I--PTA-~y-----~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKG----Viv~~~~~EA~eAv~sIl~ 178 (788)
T KOG0237|consen 111 FSKDFMHRHNI--PTA-KY-----KTFTDPEEAKSFIQSATDKALVIKADGLAAGKG----VIVAKSKEEAFEAVDSILV 178 (788)
T ss_pred HHHHHHHhcCC--Ccc-ee-----eeeCCHHHHHHHHHhCCCcceEEeecccccCCc----eEeeccHHHHHHHHHHHHh
Confidence 36888888876 433 22 224667776543322222468999999987654 8899999999999999998
Q ss_pred CeeEEEEEeccccchhhhh
Q psy16953 90 KDQVVLITGGGIANFTNVA 108 (806)
Q Consensus 90 ~~i~~~~i~GGI~~~~~vA 108 (806)
+.. .|-+-++.|-
T Consensus 179 ~~~------fg~AG~tvVi 191 (788)
T KOG0237|consen 179 KKV------FGSAGKTVVI 191 (788)
T ss_pred hhh------hccccceEeh
Confidence 763 3456666544
No 199
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=65.37 E-value=9 Score=49.48 Aligned_cols=65 Identities=8% Similarity=0.146 Sum_probs=46.8
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
|++|.+++. |++ +... .++.+|+.+...-++ -|+||||..--+++| +.+..+.+|+++.+++.++
T Consensus 133 k~~l~~~GI--pvp-~~~~-----v~s~ee~~~~~~~ig-yPvVVKP~~g~gG~G----v~iv~~~eEL~~a~~~~~~ 197 (1068)
T PRK12815 133 RALMKELGE--PVP-ESEI-----VTSVEEALAFAEKIG-FPIIVRPAYTLGGTG----GGIAENLEELEQLFKQGLQ 197 (1068)
T ss_pred HHHHHHcCc--CCC-Ccee-----eCCHHHHHHHHHHcC-CCEEEEECcCCCCCc----eEEECCHHHHHHHHHHHHh
Confidence 566777766 665 5444 567888776555565 699999998777655 3456689999999987765
No 200
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=65.16 E-value=17 Score=38.95 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=59.1
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
+.+|.++|.+. ..++.|++.+. . + .-+|+-.+++. +..+.....+..++ .+..|+.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~-~-----~-~~~i~~~~~~~--------~~~~~~~~~~~~~~-~~~~D~Vil--- 63 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNI-I-----G-KENIYYHTPSK--------KNTPFVYLQSNEEL-AKTCDIIVL--- 63 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-C-----C-cceEEEECCCh--------hcCCeEEeCChHHH-HHhCCEEEE---
Confidence 35799999763 34777877663 0 0 12588888752 22233334555663 345676555
Q ss_pred cCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHH
Q psy16953 279 ASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKL 315 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l 315 (806)
++++..+.++++++.. ..-+.+|.+..|+..+..+++
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH
Confidence 5677889999998863 222578888899986555443
No 201
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=64.87 E-value=21 Score=37.11 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCceEEEEccChhH--H-Hh--hhhcccccccCCCcccceeEeecCCCcccccccceee-ccccc--ccHHHHhcc-CCC
Q psy16953 201 EQTKAIVWGMQTRA--V-QS--MLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVY--KKMEDAMSK-NKD 271 (806)
Q Consensus 201 ~~t~v~V~G~~~r~--~-~~--ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y--~sv~daip~-~~D 271 (806)
...+++|+|.+... + +. ..+.|| .+.| ++-.+|... | ..+ ++|++ .++.+.+.+ .+|
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~-------~ivg-v~D~d~~~~-----~-~~i~g~~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF-------KIVA-AFDVDPEKI-----G-TKIGGIPVYHIDELEEVVKENDIE 148 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc-------EEEE-EEECChhhc-----C-CEeCCeEEcCHHHHHHHHHHCCCC
Confidence 45589999988643 2 22 123344 2333 333344321 1 233 35554 455664433 467
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~ 305 (806)
.+++ +.|......+.+.|.+.|++.+++++.
T Consensus 149 ~ViI---a~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 149 IGIL---TVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred EEEE---eCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 6666 667777788889998899999998764
No 202
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=64.53 E-value=12 Score=39.16 Aligned_cols=67 Identities=7% Similarity=-0.045 Sum_probs=51.6
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+|+++.+.+. |+. |+.. .+-+|++|+.+.+..++ -|++|||---.|||| .++..+.+|+++.+++-
T Consensus 4 ~~~~~~~~~gv--p~~-pg~~---~~~~~~eea~~~a~~iG-yPVliKas~ggGG~g----m~iv~~~~eL~~~~~~~ 70 (211)
T PF02786_consen 4 RFRKLAKKLGV--PVP-PGST---VPISSVEEALEFAEEIG-YPVLIKASAGGGGRG----MRIVHNEEELEEAFERA 70 (211)
T ss_dssp HHHHHHHHTT---BBS-SBES---SSBSSHHHHHHHHHHH--SSEEEEETTSSTTTS----EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CcC-CCCC---CCCCCHHHHHHHHHhcC-CceEEeecccccccc----cccccchhhhhhhhhhc
Confidence 57889999877 665 4444 11489999999999998 799999999888886 67777889998887654
No 203
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=63.82 E-value=13 Score=42.06 Aligned_cols=64 Identities=13% Similarity=-0.102 Sum_probs=42.1
Q ss_pred hHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCcc-ccccCccCceeecCCHHHHHHHHHHH
Q psy16953 11 GKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQL-IKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 11 ~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l-~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-|++|.+++. |++ +... .++.+++.+...-++ .|+|+||-.. .+++ ++.+..+.+|+++.+.+.
T Consensus 104 ~k~~l~~~Gi--p~p-~~~~-----v~s~~~l~~~~~~~g-~P~vlKp~~~g~~g~----Gv~~v~~~~el~~a~~~~ 168 (372)
T PRK06019 104 EKQFLDKLGI--PVA-PFAV-----VDSAEDLEAALADLG-LPAVLKTRRGGYDGK----GQWVIRSAEDLEAAWALL 168 (372)
T ss_pred HHHHHHHCCC--CCC-CceE-----eCCHHHHHHHHHHcC-CcEEEEeCCCCcCCC----CeEEECCHHHHHHHHHhc
Confidence 4566666666 555 4444 467777766555565 6999999753 2333 355666889988887765
No 204
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=63.72 E-value=20 Score=35.43 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred EEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCccccc--ccceee-c-ccccccHHHHhccCCCeeEEE
Q psy16953 205 AIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFY--WGHKEV-L-IPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 205 v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~--~g~~~i-~-~p~y~sv~daip~~~Dlaviv 276 (806)
|+|.|.++.. ++.|++.|+ +|+-+..+.. +.. -+-+.+ + +--..++.+++. ..|.++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----------~V~~~~R~~~-~~~~~~~~~~~~~d~~d~~~~~~al~-~~d~vi~- 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----------EVTALVRSPS-KAEDSPGVEIIQGDLFDPDSVKAALK-GADAVIH- 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----------EEEEEESSGG-GHHHCTTEEEEESCTTCHHHHHHHHT-TSSEEEE-
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----------EEEEEecCch-hcccccccccceeeehhhhhhhhhhh-hcchhhh-
Confidence 6899998775 678888776 5666655431 110 111222 2 444456777544 4554444
Q ss_pred eecCC----hhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 277 NFASL----RSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 277 i~~~~----~~~~~~~le~~~~~gvk~~viis~ 305 (806)
++.+ ...+..++++|.+.|++.++++|+
T Consensus 67 -~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 67 -AAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp -CCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred -hhhhhcccccccccccccccccccccceeeec
Confidence 3433 344677888888889998888885
No 205
>PLN02735 carbamoyl-phosphate synthase
Probab=63.61 E-value=16 Score=47.36 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=48.9
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
..|++|.+++. |++ +... .++.+|+.+...-++ -|+||||...-++| ++.+..+.+|+++.+++..
T Consensus 705 ~~k~~l~~~GI--p~p-~~~~-----v~s~eea~~~a~~iG-yPvvVKP~~g~gG~----G~~iV~~~eeL~~al~~a~ 770 (1102)
T PLN02735 705 RFNAILNELKI--EQP-KGGI-----ARSEADALAIAKRIG-YPVVVRPSYVLGGR----AMEIVYSDDKLKTYLETAV 770 (1102)
T ss_pred HHHHHHHHcCC--CCC-CeeE-----eCCHHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHHH
Confidence 45677777777 666 5544 467888877666666 79999999977776 3667778999999888764
No 206
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=63.61 E-value=2.2e+02 Score=30.82 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=88.6
Q ss_pred eCChhHHHHHHHHHHhcCCceeEEEeecC-CCCCCCCHHHHHHHh-hcCCCccEEEEEEcc-CCcch-HHHHHHHHhc-C
Q psy16953 367 SRSGGMSNELNNIISKATNGVYEGVAIGG-DRYPGTTFMDHILRY-QADPEVKMIVLLGEV-GGVEE-YEVCAALKDK-R 441 (806)
Q Consensus 367 SQSG~l~~~l~~~~~~~g~G~s~~vs~Gn-~~~~d~~~~D~l~~l-~~Dp~Tk~I~ly~Ei-gg~~d-~~f~~a~r~~-~ 441 (806)
.-+..++..+...+.++|+-... ++... . .|=...=-|.|+ -.+.+..+|.+.+-. .+.++ .+|=++++++ +
T Consensus 87 ~g~~eLA~~i~~~~~~~gi~~~~-~~~~~~~--lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~al~~~l~ 163 (271)
T cd07373 87 RSDTALAEACVTACPEHGVHARG-VDYDGFP--IDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKLGAIAADAAK 163 (271)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEE-ecCCCCC--CcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999999888876543 22211 2 344444455666 336788888888752 13344 6777777763 2
Q ss_pred -CCCCEEEEEeCcCcCcCccccc-ccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccccC
Q psy16953 442 -ITKPLVAWCIGTCASMFTSEVQ-FGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 442 -~~KPVV~lk~Grs~~~~g~~aa-~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~~~ 519 (806)
.++-|+++-+|...-.++.... ..+ .. +.+ .-+..||+.+.+. +...|+++|++........-
T Consensus 164 ~~~~rV~iIgSG~lSH~L~~~~~~~~~-~~--~~~-p~~~~FD~~~~~~--l~~gd~~~ll~~~~~~~~~~--------- 228 (271)
T cd07373 164 DQNKRVAVVGVGGLSGSLFREEIDPRE-DH--IAN-EEDDKWNRRVLKL--IEAGDLPALREAMPVYAKAA--------- 228 (271)
T ss_pred HcCCeEEEEEecccccCcCcCCCcCCC-CC--ccC-ccHHHHHHHHHHH--HHcCCHHHHHhcCHHHHHHh---------
Confidence 3478999988876642222111 011 01 111 1234588888665 55568899887655555565
Q ss_pred CCCCCCCCcccchHHh
Q psy16953 520 PELPPPTVPMDYSWAR 535 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~ 535 (806)
|.+.|-+.+.|+.
T Consensus 229 ---~~~~g~~pl~~~~ 241 (271)
T cd07373 229 ---RVDMGFKHLHWIL 241 (271)
T ss_pred ---cccCChHHHHHHH
Confidence 7777777776655
No 207
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=63.34 E-value=14 Score=44.39 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=45.7
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ +... .++.+++.....-++ .|+||||-..- +++| +.+..+.+|+++.+++.
T Consensus 123 ~~~K~~l~~~GI--ptp-~~~~-----v~~~~el~~~~~~ig-~P~VvKP~~ggs~g~G----v~~v~~~~eL~~a~~~~ 189 (577)
T PLN02948 123 YAQKVHFSKHGI--PLP-EFME-----IDDLESAEKAGDLFG-YPLMLKSRRLAYDGRG----NAVAKTEEDLSSAVAAL 189 (577)
T ss_pred HHHHHHHHHCCc--CCC-CeEE-----eCCHHHHHHHHHhcC-CcEEEEeCCCCCCCCC----eEEECCHHHHHHHHHHh
Confidence 445677777766 665 4444 456777766555565 69999997653 5664 55667889999988876
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 190 ~ 190 (577)
T PLN02948 190 G 190 (577)
T ss_pred h
Confidence 4
No 208
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=62.46 E-value=13 Score=44.03 Aligned_cols=69 Identities=7% Similarity=-0.105 Sum_probs=47.6
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|+++.+++. |++ |.... ..+|++++.+....++ .|+||||-.--|+| ++.+..+.+|+++.+++..
T Consensus 117 ~~~k~~l~~~GV--pv~-p~~~~---~v~~~~e~~~~a~~ig-yPvvIKp~~GgGG~----Gv~iv~~~~eL~~a~~~~~ 185 (499)
T PRK08654 117 INAKKLMKKAGV--PVL-PGTEE---GIEDIEEAKEIAEEIG-YPVIIKASAGGGGI----GMRVVYSEEELEDAIESTQ 185 (499)
T ss_pred HHHHHHHHHcCc--CCC-CCcCc---CCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----eEEEeCCHHHHHHHHHHHH
Confidence 456777888877 654 43321 1357888877666666 69999997655443 5667778999998887643
No 209
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=62.10 E-value=16 Score=38.96 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHH-HHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIG-SVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~-all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-.-+..+-=.+++++.. +.--.-+.|++-.-...-|...+- .....+
T Consensus 87 ~~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l--------- 152 (251)
T TIGR03189 87 DSPVPILVAVRGQCLG-GGLEVAAAGNLMFAAPDAK----LGQPEIVLGVFAPAASCLLPERMGRVAAEDL--------- 152 (251)
T ss_pred hCCCCEEEEecCeeee-HHHHHHHhCCEEEEcCCCE----EeCchhhcCCCCCchHHHHHHHhCHHHHHHH---------
Confidence 3689999999998864 2555555554445555443 444455677753211111111100 011111
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 153 ---~ltg~~~~a~eA~~~Glv 170 (251)
T TIGR03189 153 ---LYSGRSIDGAEGARIGLA 170 (251)
T ss_pred ---HHcCCCCCHHHHHHCCCc
Confidence 235567888888888875
No 210
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=61.94 E-value=15 Score=37.06 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccc-eeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGH-KEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~-~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
++.+|+|+|.+.. ...||.|+|+ .|.-..... +-.|-. ++-|+.++ +++||+.. -|+.++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-----------~V~Vglr~~--s~s~~~A~~~Gf~v~-~~~eAv~~-aDvV~~- 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-----------NVIVGLREG--SASWEKAKADGFEVM-SVAEAVKK-ADVVML- 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC------------EEEEEE-TT--CHHHHHHHHTT-ECC-EHHHHHHC--SEEEE-
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-----------CEEEEecCC--CcCHHHHHHCCCeec-cHHHHHhh-CCEEEE-
Confidence 4678999998754 3779999997 333222221 112211 12256776 67786554 566555
Q ss_pred eecCChhhHHHHH-HHhc-CCCCCEEEEEcCCCCH
Q psy16953 277 NFASLRSAYDSTI-ETLG-FPQIRSIAIIAEGIPE 309 (806)
Q Consensus 277 i~~~~~~~~~~~l-e~~~-~~gvk~~viis~Gf~E 309 (806)
..|.+.-+++. ++.. ...-..+++++.||.-
T Consensus 67 --L~PD~~q~~vy~~~I~p~l~~G~~L~fahGfni 99 (165)
T PF07991_consen 67 --LLPDEVQPEVYEEEIAPNLKPGATLVFAHGFNI 99 (165)
T ss_dssp ---S-HHHHHHHHHHHHHHHS-TT-EEEESSSHHH
T ss_pred --eCChHHHHHHHHHHHHhhCCCCCEEEeCCcchh
Confidence 66776666665 3332 2334579999999964
No 211
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=61.87 E-value=11 Score=48.58 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
+++|.+++. |++ +... .++.+|+.+....++ .|+||||..-.++|| +.+..|.+|+++++++.+.
T Consensus 674 ~~~L~~~GI--p~P-~~~~-----~~s~ee~~~~~~~ig-yPvvVKP~~~~Gg~G----v~iv~~~eeL~~~~~~a~~ 738 (1066)
T PRK05294 674 SKLLEKLGI--PQP-PNGT-----ATSVEEALEVAEEIG-YPVLVRPSYVLGGRA----MEIVYDEEELERYMREAVK 738 (1066)
T ss_pred HHHHHHcCc--CCC-CeEE-----ECCHHHHHHHHHhcC-CCeEEEeCCCCCCCc----EEEECCHHHHHHHHHHHHh
Confidence 455666655 555 4444 567888877666666 699999988877765 5677899999999988653
No 212
>PLN02256 arogenate dehydrogenase
Probab=61.84 E-value=30 Score=38.23 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+..+|.|+|.+. ...+.+.+.|+ .|+-++++...+. ....++..+.+..+++....|+.++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~-----------~V~~~d~~~~~~~---a~~~gv~~~~~~~e~~~~~aDvVil-- 98 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH-----------TVLATSRSDYSDI---AAELGVSFFRDPDDFCEEHPDVVLL-- 98 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-----------EEEEEECccHHHH---HHHcCCeeeCCHHHHhhCCCCEEEE--
Confidence 445799999752 23556666664 4665555421100 0123455688888843345677665
Q ss_pred ecCChhhHHHHHHHhc
Q psy16953 278 FASLRSAYDSTIETLG 293 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~ 293 (806)
++|...+.++++++.
T Consensus 99 -avp~~~~~~vl~~l~ 113 (304)
T PLN02256 99 -CTSILSTEAVLRSLP 113 (304)
T ss_pred -ecCHHHHHHHHHhhh
Confidence 667778888888873
No 213
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=61.56 E-value=17 Score=38.64 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhH-HHHHHHHHHhhhhCCccccCC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTL-GDIIGSVYKDLVSRGDIVPQP 520 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL-~~~~~all~~L~~~g~i~~~~ 520 (806)
..||||+..-|.+-. .|-.-+...-=.++.++.. +.--+-+.|+...-....+ ...+-.-...+
T Consensus 88 ~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~l---------- 152 (248)
T PRK06072 88 SDKIYISAINGVTAG-ACIGIALSTDFKFASRDVK----FVTAFQRLGLASDTGVAYFLLKLTGQRFYEI---------- 152 (248)
T ss_pred CCCCEEEEECCeeeh-HHHHHHHhCCEEEEcCCCE----EecchhhcCcCCCchHHHHHHHHhhHHHHHH----------
Confidence 689999999998864 2444444444445555543 4444456787632221111 11110001111
Q ss_pred CCCCCCCcccchHHhhccccc
Q psy16953 521 ELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 521 ~~P~~~~PMd~~~a~~~g~~r 541 (806)
=...-+++..+|++.|++.
T Consensus 153 --ll~g~~~~a~eA~~~Glv~ 171 (248)
T PRK06072 153 --LVLGGEFTAEEAERWGLLK 171 (248)
T ss_pred --HHhCCccCHHHHHHCCCcc
Confidence 1234468888899999874
No 214
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.53 E-value=1.6e+02 Score=31.70 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=74.1
Q ss_pred HHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc-cc-C--CccccccCCCCccccccc---CCC
Q psy16953 287 STIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG-LK-P--GCFKIGNTGGMMDNILHS---KLY 358 (806)
Q Consensus 287 ~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi-i~-p--~~~~ig~~~g~~~~~~~~---~~~ 358 (806)
+..+.+... +|..+ +. +........+..++++.++.++.|.+..- ++ + ..++++............ ..+
T Consensus 57 ~~~~~li~~~~v~ai--iG-~~~s~~~~~v~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~ 133 (334)
T cd06347 57 NAATRLIDQDKVVAI--IG-PVTSGATLAAGPIAEDAKVPMITPSATNPKVTQGKDYVFRVCFIDPFQGTVMAKFATENL 133 (334)
T ss_pred HHHHHHhcccCeEEE--Ec-CCccHhHHHhHHHHHHCCCeEEcCCCCCCCcccCCCeEEEeeCCcHHHHHHHHHHHHHhc
Confidence 444555433 66543 33 33334455667889999999999976431 11 1 112222100000000000 112
Q ss_pred CCCCEEEEeCCh-hHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 359 RPGSVAYVSRSG-GMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 359 ~~G~ValvSQSG-~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
....|++|..++ ..+..+. ..+.+.|+-+-........ ..++...+.-+.++ ..++|+++.. ..+ ..
T Consensus 134 ~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~d~~~~~~~~~~~-~~d~i~~~~~---~~~~~~ 206 (334)
T cd06347 134 KAKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAG---DTDFSAQLTKIKAK-NPDVIFLPGY---YTEVGL 206 (334)
T ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEecCC---CCcHHHHHHHHHhc-CCCEEEEcCc---hhhHHH
Confidence 234699997654 4443333 3344445433222222222 34577777766543 4567777665 345 77
Q ss_pred HHHHHHhcCCCCCEE
Q psy16953 433 VCAALKDKRITKPLV 447 (806)
Q Consensus 433 f~~a~r~~~~~KPVV 447 (806)
|++++++...+.|++
T Consensus 207 ~~~~~~~~g~~~~i~ 221 (334)
T cd06347 207 IAKQARELGIKVPIL 221 (334)
T ss_pred HHHHHHHcCCCCcEE
Confidence 888877755444443
No 215
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.84 E-value=26 Score=36.70 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=62.2
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccc-cccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKF-YWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~-~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+.+|.|+|.+.- ..+.+++.++ .+ .-.++-++....++. .+ .+..++..+.+..+++ +..|+.++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~------~~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~DiVii-- 72 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK------EY-IEEIIVSNRSNVEKLDQL-QARYNVSTTTDWKQHV-TSVDTIVL-- 72 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC------CC-cCeEEEECCCCHHHHHHH-HHHcCcEEeCChHHHH-hcCCEEEE--
Confidence 468999997642 2456665542 00 113555553210000 00 0112456778888854 45676555
Q ss_pred ecCChhhHHHHHHHhcC--CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 278 FASLRSAYDSTIETLGF--PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~--~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
++|.....++++++.. .+ +.+|-++.|+.-+..++... ....+-..+||.
T Consensus 73 -avp~~~~~~v~~~l~~~~~~-~~vis~~~gi~~~~l~~~~~--~~~~v~r~~Pn~ 124 (245)
T PRK07634 73 -AMPPSAHEELLAELSPLLSN-QLVVTVAAGIGPSYLEERLP--KGTPVAWIMPNT 124 (245)
T ss_pred -ecCHHHHHHHHHHHHhhccC-CEEEEECCCCCHHHHHHHcC--CCCeEEEECCcH
Confidence 6677788888888752 23 57788888997654333221 011233467764
No 216
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=60.09 E-value=2.3e+02 Score=31.23 Aligned_cols=159 Identities=12% Similarity=0.121 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCHH--HHHHHHHHHHHcCCeEEccCcccc---ccCCccccccCCCCccccccc
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPEN--MTRKLNLLAKEKGVSIIGPATVGG---LKPGCFKIGNTGGMMDNILHS 355 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E~--~~~~l~~~a~~~giriiGPN~~Gi---i~p~~~~ig~~~g~~~~~~~~ 355 (806)
|...+.++.+.+... +.++|+.+-.+.. ....+..++...++.+|+|.+-.- -+...+ .......|.
T Consensus 48 ~~~~~~~~~~~l~~~--~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~------~~~~R~~p~ 119 (362)
T cd06367 48 PISLLLSVCDLLVVQ--VVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIH------SLFLQTGPS 119 (362)
T ss_pred HHHHHHHHHHHhccc--ceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccccccccCCCcc------cceEeecCc
Confidence 334444555555433 3444443322222 255667788999999999866432 111110 000001111
Q ss_pred ------------CCCCCCCEEEEeCChhHH----HHHHHHHHhcCCc--eeEEEeecCCCCCCCCHHHHHHHhhcCCCcc
Q psy16953 356 ------------KLYRPGSVAYVSRSGGMS----NELNNIISKATNG--VYEGVAIGGDRYPGTTFMDHILRYQADPEVK 417 (806)
Q Consensus 356 ------------~~~~~G~ValvSQSG~l~----~~l~~~~~~~g~G--~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk 417 (806)
..+.--.|++|..+...+ ..+...+.+.|+- +...+..-.. ...++.+++..+.+ ...+
T Consensus 120 ~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~--~~~~~~~~l~~l~~-~~~~ 196 (362)
T cd06367 120 LEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLS--DDDGDARLLRQLKK-LESR 196 (362)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccC--CCcchHHHHHHHHh-cCCc
Confidence 113455799999877653 3344445556655 3333332222 12267788877765 5678
Q ss_pred EEEEEEccCCcch-HHHHHHHHhcCCCCCEEEEEeCc
Q psy16953 418 MIVLLGEVGGVEE-YEVCAALKDKRITKPLVAWCIGT 453 (806)
Q Consensus 418 ~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~lk~Gr 453 (806)
+|++++. ..+ ..+++.+++.....|-.+|....
T Consensus 197 vivl~~~---~~~~~~il~~a~~~g~~~~~~~wI~~~ 230 (362)
T cd06367 197 VILLYCS---KEEAERIFEAAASLGLTGPGYVWIVGE 230 (362)
T ss_pred EEEEeCC---HHHHHHHHHHHHHcCCCCCCcEEEECc
Confidence 9988887 456 88889888877666655555443
No 217
>KOG2617|consensus
Probab=59.95 E-value=23 Score=40.24 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=62.8
Q ss_pred ccceeccccccccccccCCCCccccc--------cCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccce
Q psy16953 544 ASFMTSICDERGQELLYAGMPISDVL--------KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHN 615 (806)
Q Consensus 544 ~~~~t~i~d~~~~~i~~~G~~i~~~i--------~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~a 615 (806)
--|++++-|.. +.|.|||++|.+.- +.+-.+.+.||++++|.-|+..+...++.-|.-. + ..+. +.
T Consensus 70 ~~~e~s~Ld~~-~gI~frg~~i~e~q~~lp~~~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~r---s-~vP~-~v 143 (458)
T KOG2617|consen 70 LLWETSVLDPE-EGIRFRGGDIPECQKRLPPAEEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQR---S-AVPQ-GV 143 (458)
T ss_pred eeecCcccchh-hCeeecCCCHHHHHhhCCCCccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHh---c-cccH-HH
Confidence 45666665533 56777777664321 1122577899999999999999999988888543 3 4444 55
Q ss_pred eeeeeccCCC--hHHHHHHhhccc--ccccCChH
Q psy16953 616 TIVCARAGKD--LVSSLVSGLLTI--GDRFGGAL 645 (806)
Q Consensus 616 arv~aSa~ad--l~~avaagl~al--G~~hGGA~ 645 (806)
-++.-|-..| +-+-+++|++++ ...+..|.
T Consensus 144 ~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay 177 (458)
T KOG2617|consen 144 LDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAY 177 (458)
T ss_pred HHHHHhCCcccchHHHHHHHHHhccccccchhhh
Confidence 5666666554 456788888888 55554443
No 218
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=59.84 E-value=31 Score=40.73 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
...+.+++.|.+.++..+|+-++ .-+...+.+.+++.|++++||+.-.
T Consensus 56 ~d~~~l~~~a~~~~id~Vi~g~E---~~l~~glad~l~~~Gi~v~Gps~~a 103 (486)
T PRK05784 56 NSPEEVKKVAKEVNPDLVVIGPE---EPLFAGVADVLREEGFPVFGASSKC 103 (486)
T ss_pred CCHHHHHHHHHHhCCCEEEECCc---hHHHHHHHHHHHhCCCCEECCcHHH
Confidence 45667888888888887775222 2345567777788999999997543
No 219
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=59.82 E-value=57 Score=34.77 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=17.7
Q ss_pred hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~ 305 (806)
....++++|.+.||+.+|.+|+
T Consensus 84 ~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 84 PMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeec
Confidence 3456888898899999988875
No 220
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=59.80 E-value=16 Score=39.15 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--..+.|+...--.. -|...+ ......+
T Consensus 96 ~~~kpvIAav~G~a~G-gG~~lala~D~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l-------- 162 (260)
T PRK07511 96 AFPKPVIAAVEGAAAG-AGFSLALACDLLVAARDAK----FVMAYVKVGLTPDGGGSWFLARALPRQLATEL-------- 162 (260)
T ss_pred cCCCCEEEEECCeeeh-HHHHHHHhCCEEEeeCCCE----EeccccccCcCCCchHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2444444443334444432 33344566765322111 122211 1111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....|++..+|++.|++
T Consensus 163 ----~ltg~~~~a~eA~~~Glv 180 (260)
T PRK07511 163 ----LLEGKPISAERLHALGVV 180 (260)
T ss_pred ----HHhCCCCCHHHHHHcCCc
Confidence 246678888899999986
No 221
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=59.79 E-value=65 Score=33.20 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=65.1
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcc------cccccc--eeecccccccHHHHhc-c
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL------KFYWGH--KEVLIPVYKKMEDAMS-K 268 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~------~~~~g~--~~i~~p~y~sv~daip-~ 268 (806)
.+++|+|+|.++ ..+++|...| .|+++.+..+.-+ -+++.. +.+|.+--..+++.+. -
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G----------Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l 87 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG----------IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL 87 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC----------CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH
Confidence 578999999885 3488999999 5788888765210 012222 2233111111111122 2
Q ss_pred CCCeeEEEeecCC---hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 269 NKDADVLVNFASL---RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 269 ~~Dlavivi~~~~---~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.||+.+-.+--.. ....++.++. .. +||.+.. +.+....+.++|+++++.++=..|.|+.
T Consensus 88 Np~v~i~~~~~~~~~~~~~~~~~~~~-----~d-vVi~~~d-~~~~~~~ln~~c~~~~ip~i~~~~~G~~ 150 (198)
T cd01485 88 NPNVKLSIVEEDSLSNDSNIEEYLQK-----FT-LVIATEE-NYERTAKVNDVCRKHHIPFISCATYGLI 150 (198)
T ss_pred CCCCEEEEEecccccchhhHHHHHhC-----CC-EEEECCC-CHHHHHHHHHHHHHcCCCEEEEEeecCE
Confidence 4666554221111 1222333333 33 4444533 4556667889999999999988877754
No 222
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=59.56 E-value=16 Score=42.70 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=45.6
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|++|.+++. |++ |... ...++++++.+...-++ .|+||||-..-|+|| |.+..+.+|++++++.
T Consensus 116 ~~~r~~l~~~GI--p~p-p~~~---~~~~~~~e~~~~~~~ig-yPvvvKp~~ggGg~G----v~~v~~~~eL~~a~~~ 182 (472)
T PRK07178 116 TEARRAMIKAGV--PVT-PGSE---GNLADLDEALAEAERIG-YPVMLKATSGGGGRG----IRRCNSREELEQNFPR 182 (472)
T ss_pred HHHHHHHHHCCC--CCC-CCcC---cCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCCC----ceEeCCHHHHHHHHHH
Confidence 445677777766 554 3321 12467888877666666 799999988766554 5567788999887765
No 223
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=59.32 E-value=12 Score=45.13 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=53.6
Q ss_pred CHHHHHHHhhcCCCccEEEEEEc-c-C-Ccch-HHHHHHHHhcC-CCCCEEEEEeCcCcCc-----CcccccccccCCcC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGE-V-G-GVEE-YEVCAALKDKR-ITKPLVAWCIGTCASM-----FTSEVQFGHAGSCA 471 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~E-i-g-g~~d-~~f~~a~r~~~-~~KPVV~lk~Grs~~~-----~g~~aa~sHtGala 471 (806)
++.+.|+...+||++|.|++.+. . | +... +++.+++++.+ .+|||+++--+-+... ...+.-+..+|++.
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v~ 159 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSVD 159 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceEE
Confidence 55666778889999999999987 2 2 2344 66778887775 6899999854332210 00112222344432
Q ss_pred CCCcc-cHHHHHHHHHHcCCcc
Q psy16953 472 NSDAE-TAVVKNKSLAQAGAHV 492 (806)
Q Consensus 472 g~~~~-~a~~~~aa~~qaGvi~ 492 (806)
...-. ....+..+|.+.||-.
T Consensus 160 ~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 160 LHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred eeceecccccHHHHHHHcCCeE
Confidence 11110 0112788899988865
No 224
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=58.82 E-value=1.4e+02 Score=35.88 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=103.0
Q ss_pred HHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCc
Q psy16953 86 ERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPE 165 (806)
Q Consensus 86 ~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~ 165 (806)
+.-|+.+.-+-++|.+. ... .++++ ..+ .|++-...-..++-.++++.. ...|+.+.....
T Consensus 152 ~~~g~~i~Gv~V~g~~~-i~~----------~v~~~-----~~~-~iiiAips~~~~~~~~i~~~l-~~~~~~v~~lP~- 212 (588)
T COG1086 152 DLTGMKIRGVPVLGRIE-IER----------VVEEL-----GIQ-LILIAIPSASQEERRRILLRL-ARTGIAVRILPQ- 212 (588)
T ss_pred hhcCCEEeceeeechhH-HHH----------HHHHc-----CCc-eEEEecCCCCHHHHHHHHHHH-HhcCCcEEecCc-
Confidence 34567777888888885 443 34442 222 566666666666666666665 466799999999
Q ss_pred chHHHHHHHHhcCCC--------CCCCCCCCCCcccccCCCCCCCceEEEEccChhH----HHhhhhcccccccCCCccc
Q psy16953 166 THMTAIVGMALGKKE--------IPSETSADGATANFLLPGGQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVA 233 (806)
Q Consensus 166 ~~m~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~ 233 (806)
+++.++.+-..+. .++.++....-.+++ .+.+|+|-|.+|.. .+.+++++ .
T Consensus 213 --~~~l~~~~~~lreI~ieDLLgR~pV~~d~~~i~~~~-----~gK~vLVTGagGSiGsel~~qil~~~----------p 275 (588)
T COG1086 213 --LTDLKDLNGQLREIEIEDLLGRPPVALDTELIGAML-----TGKTVLVTGGGGSIGSELCRQILKFN----------P 275 (588)
T ss_pred --HHHHHHhccccccCCHHHHhCCCCCCCCHHHHHhHc-----CCCEEEEeCCCCcHHHHHHHHHHhcC----------C
Confidence 8888873322222 111111111112222 66689999988775 45555554 3
Q ss_pred ceeEeecCCCccccc---------cc----ceeec-ccccccHHHHhcc-CCCeeEEEeecCChhh--------------
Q psy16953 234 AMVYPFTGDHKLKFY---------WG----HKEVL-IPVYKKMEDAMSK-NKDADVLVNFASLRSA-------------- 284 (806)
Q Consensus 234 g~iypvnp~~~~~~~---------~g----~~~i~-~p~y~sv~daip~-~~Dlavivi~~~~~~~-------------- 284 (806)
.+|.-+..+.. +.| |+ ...+| ++=+.++..++.+ .||...= +.+-..
T Consensus 276 ~~i~l~~~~E~-~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfH---AAA~KHVPl~E~nP~Eai~t 351 (588)
T COG1086 276 KEIILFSRDEY-KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFH---AAALKHVPLVEYNPEEAIKT 351 (588)
T ss_pred CEEEEecCchH-HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEE---hhhhccCcchhcCHHHHHHH
Confidence 34444332210 000 00 12345 7888888886655 3664332 111111
Q ss_pred ----HHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 285 ----YDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 285 ----~~~~le~~~~~gvk~~viis~Gf 307 (806)
...++++|.+.||+.+|++|..=
T Consensus 352 NV~GT~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 352 NVLGTENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred hhHhHHHHHHHHHHhCCCEEEEEecCc
Confidence 23578888889999999999753
No 225
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=58.67 E-value=58 Score=33.58 Aligned_cols=118 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc------ccccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK------LKFYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~------~~~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
.+++|+|+|.++- .+++|...| .|.|+.+.++.- .-+++..+.+|.+--....+.+. -.|
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~G----------Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp 89 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSG----------IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP 89 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcC----------CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC
Confidence 5779999998863 488999999 678888876521 01222333344211111111121 246
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
|+.+-...-...+..++.+ .+.. +||.+.. +.+....+-++|+++++.++=.+|.|+.
T Consensus 90 ~v~i~~~~~~~~~~~~~~~-----~~~d-vVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G~~ 147 (197)
T cd01492 90 RVKVSVDTDDISEKPEEFF-----SQFD-VVVATEL-SRAELVKINELCRKLGVKFYATGVHGLF 147 (197)
T ss_pred CCEEEEEecCccccHHHHH-----hCCC-EEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecCCE
Confidence 6655421111111122233 3343 4444543 4556777889999999998877776643
No 226
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=58.55 E-value=54 Score=37.34 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=37.7
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEE-cCCC----------CHHHHHHHHHHHHHcCC-eEEccCccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAII-AEGI----------PENMTRKLNLLAKEKGV-SIIGPATVG 333 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~vii-s~Gf----------~E~~~~~l~~~a~~~gi-riiGPN~~G 333 (806)
..+|+++. +.|..........+.++|++++||= |+-| ||---+.|.. +.+.|+ .|..|||.=
T Consensus 64 ~~~Divf~---a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iIanPnC~t 137 (369)
T PRK06598 64 KKLDIIIT---CQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTFVGGNCTV 137 (369)
T ss_pred cCCCEEEE---CCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEEEcCChHH
Confidence 34676555 7788888888888877888754443 3333 3422234433 334675 678898843
No 227
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.50 E-value=1e+02 Score=32.06 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.+.+|+|+|.+.- -++.|+++|- .|+-|.|+-. +.+.+ +-+...+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-----------~VtVvsp~~~---------------~~l~~-l~~~~~i~~~-- 58 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-----------QLRVIAEELE---------------SELTL-LAEQGGITWL-- 58 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-----------EEEEEcCCCC---------------HHHHH-HHHcCCEEEE--
Confidence 4568999998854 4778888763 7888887621 22333 2232334443
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giri 326 (806)
- .... +.. +. + ..+|+.+.|.+| .-+++.+.|++.|+.+
T Consensus 59 -~-~~~~-~~d---l~--~-~~lVi~at~d~~-ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 59 -A-RCFD-ADI---LE--G-AFLVIAATDDEE-LNRRVAHAARARGVPV 97 (205)
T ss_pred -e-CCCC-HHH---hC--C-cEEEEECCCCHH-HHHHHHHHHHHcCCEE
Confidence 1 1111 222 22 2 346777778764 4467888999988877
No 228
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=58.25 E-value=37 Score=37.28 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc------ccccccceeec-cc---ccccHHHHhc
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK------LKFYWGHKEVL-IP---VYKKMEDAMS 267 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~------~~~~~g~~~i~-~p---~y~sv~daip 267 (806)
.+++|+|+|+++- .++||...| .|.|+.+.++.= .-|++..+.+| -+ +.+.+++ +
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaG----------Vg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e-L- 85 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAG----------VKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE-L- 85 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcC----------CCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH-H-
Confidence 5789999998864 588999999 578887776521 01222223333 11 2223333 2
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
.|++-|-+. .....++.+.. .. +||.+.. +.+.+.++-++|+++++.++--++.|+.-
T Consensus 86 -Np~V~V~~~---~~~~~~~~l~~-----fd-vVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 86 -NPYVPVTVS---TGPLTTDELLK-----FQ-VVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFG 143 (286)
T ss_pred -CCCCEEEEE---eccCCHHHHhc-----CC-EEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEE
Confidence 344444311 11222334433 33 5555543 66677889999999999999999988763
No 229
>PLN02858 fructose-bisphosphate aldolase
Probab=58.18 E-value=33 Score=45.61 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=73.8
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
..++|-++|++. ...+||++.|| .=.+|=.++..-+.+ .+.|.....|..| +.+..|+.++
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~---------~v~v~dr~~~~~~~l----~~~Ga~~~~s~~e-~a~~advVi~-- 66 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF---------KVQAFEISTPLMEKF----CELGGHRCDSPAE-AAKDAAALVV-- 66 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC---------eEEEEcCCHHHHHHH----HHcCCeecCCHHH-HHhcCCEEEE--
Confidence 346799999763 45789999998 223454444321111 1235667899999 5665555444
Q ss_pred ecCChhhHHHHHH---Hhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcC--CeEEccCcccc
Q psy16953 278 FASLRSAYDSTIE---TLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKG--VSIIGPATVGG 334 (806)
Q Consensus 278 ~~~~~~~~~~~le---~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~g--iriiGPN~~Gi 334 (806)
+++...++.+++. .+. ...-..++|-.+=......+++.+.++++| ++++----.|-
T Consensus 67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg 129 (1378)
T PLN02858 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKG 129 (1378)
T ss_pred EcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCC
Confidence 6777778888762 222 111234666677677778888888888888 77665444443
No 230
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=58.12 E-value=15 Score=47.39 Aligned_cols=65 Identities=6% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
|++|.+++. |++ +... .++.+++.+...-++ -|+||||..--++|| +.+..|.+|+++++++.++
T Consensus 132 k~~l~~~Gi--pvp-~~~~-----v~s~~e~~~~~~~ig-yPvIVKP~~g~gg~G----v~iv~~~eeL~~~~~~~~~ 196 (1050)
T TIGR01369 132 REAMKEIGE--PVP-ESEI-----AHSVEEALAAAKEIG-YPVIVRPAFTLGGTG----GGIAYNREELKEIAERALS 196 (1050)
T ss_pred HHHHHHCCC--CCC-Ceee-----cCCHHHHHHHHHHhC-CCeEEECCCCCCCCC----eEEECCHHHHHHHHHHHHh
Confidence 555566655 555 4444 567888776666666 699999996555554 4456689999998887764
No 231
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.08 E-value=43 Score=37.70 Aligned_cols=110 Identities=10% Similarity=0.041 Sum_probs=62.9
Q ss_pred eEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeeccc--ccccHHHHhccCCCeeEEEee
Q psy16953 204 KAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIP--VYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 204 ~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p--~y~sv~daip~~~Dlavivi~ 278 (806)
+|.|+|.+ +...+.|.+.|+ .-.+|-.+++..+... ....++. ...++.++ -...|+.++
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~---------~v~i~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~-~~~aDlVil--- 66 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP---------DVFIIGYDPSAAQLAR--ALGFGVIDELAADLQRA-AAEADLIVL--- 66 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC---------CeEEEEeCCCHHHHHH--HhcCCCCcccccCHHHH-hcCCCEEEE---
Confidence 58889965 445778888886 4457766665311000 0011211 23456663 345666555
Q ss_pred cCChhhHHHHHHHhcC--CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 279 ASLRSAYDSTIETLGF--PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~--~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
++|...+.++++++.. ..-..+|.-.++......+++.+. ...+.+++|-
T Consensus 67 avP~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~ 118 (359)
T PRK06545 67 AVPVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGG 118 (359)
T ss_pred eCCHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEee
Confidence 5566788888888763 222355555677776555555444 2356778874
No 232
>PRK02186 argininosuccinate lyase; Provisional
Probab=57.45 E-value=16 Score=46.21 Aligned_cols=66 Identities=9% Similarity=-0.075 Sum_probs=43.8
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
.-|++|.+++. |++ +... .++.+++.+...-++ .|+||||-.-.|.+ +|.+..|.+|+.+++++..
T Consensus 110 ~~r~~L~~~GI--p~P-~~~~-----v~~~~e~~~~~~~~~-~PvVVKP~~g~gS~----GV~~v~~~~el~~a~~~~~ 175 (887)
T PRK02186 110 RLARTLRDHGI--DVP-RTHA-----LALRAVALDALDGLT-YPVVVKPRMGSGSV----GVRLCASVAEAAAHCAALR 175 (887)
T ss_pred HHHHHHHHcCC--CCC-CEEE-----eCCHHHHHHHHHhCC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHHHH
Confidence 34556666655 554 3333 456666655444444 69999998866655 3777789999999988765
No 233
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=57.42 E-value=30 Score=37.33 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCcc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i 516 (806)
...||||+..-|.+-. .|-.-+...-=.++.++.. +..-.-+.|++..-. +-.++...++ . .+
T Consensus 107 ~~~kpvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a-~-~l------ 173 (272)
T PRK06142 107 DCRKPVIAAVQGWCIG-GGVDLISACDMRYASADAK----FSVREVDLGMVADVGSLQRLPRIIGDGHL-R-EL------ 173 (272)
T ss_pred hCCCCEEEEecCcccc-chHHHHHhCCEEEecCCCe----ecchhhhhCCCCCchHHHHHHHHhCHHHH-H-HH------
Confidence 3789999999999875 2555555554445555443 555556677753211 1111111111 1 11
Q ss_pred ccCCCCCCCCCcccchHHhhcccc
Q psy16953 517 VPQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 517 ~~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=...-+++..+|++.|++
T Consensus 174 ------~l~g~~~~a~eA~~~GLv 191 (272)
T PRK06142 174 ------ALTGRDIDAAEAEKIGLV 191 (272)
T ss_pred ------HHhCCCcCHHHHHHcCCc
Confidence 235667888899999986
No 234
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=57.28 E-value=29 Score=36.95 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.5
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 95 ~~~kPvIAav~G~a~G 110 (251)
T PRK06023 95 EAEKPIVSGVDGLAIG 110 (251)
T ss_pred hCCCCEEEEeCCceec
Confidence 3789999999988775
No 235
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=57.06 E-value=34 Score=33.12 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHhccCCCeeEEEeec-CChhhHHHHHHHhcCCCCCEEEEEcCCC---CHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 262 MEDAMSKNKDADVLVNFA-SLRSAYDSTIETLGFPQIRSIAIIAEGI---PENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 262 v~daip~~~Dlavivi~~-~~~~~~~~~le~~~~~gvk~~viis~Gf---~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
++.|+.+.+|+..+-... ..-.....+++.+.++|++.+.|+-+|- ++++.++-.+..++.|+ ++.||.+
T Consensus 43 v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 43 IDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 455556677765542111 2234467889999889986666666663 77776666666677897 6888875
No 236
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=56.69 E-value=19 Score=40.77 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=46.8
Q ss_pred chhchHHHHHhhCCCCccccccccccccc---CCCHHHHHhcc-ccccCCCeEEccCccccccCccCceeecCCHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKE---ETSWAELVRNE-PWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQS 82 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~ 82 (806)
.-+-.|++|.+++. |++ |... ++. ..+.+++.+.. .-++ .|+||||...=... +|.+..+.+|+++
T Consensus 129 DK~~tK~~l~~~GI--pt~-p~~~--~~~~~~~~~~~~~~~~~~~~lg-~PviVKP~~~GsS~----Gv~~v~~~~el~~ 198 (364)
T PRK14570 129 NKYFCKLLLKSFNI--PLV-PFIG--FRKYDYFLDKEGIKKDIKEVLG-YPVIVKPAVLGSSI----GINVAYNENQIEK 198 (364)
T ss_pred CHHHHHHHHHHcCC--CCC-CEEE--EeccccccchHHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEeCCHHHHHH
Confidence 34568999999988 665 4322 211 12445544332 2344 69999997544333 4777889999999
Q ss_pred HHHHHcC
Q psy16953 83 WISERMG 89 (806)
Q Consensus 83 ~~~~~~g 89 (806)
++++...
T Consensus 199 al~~a~~ 205 (364)
T PRK14570 199 CIEEAFK 205 (364)
T ss_pred HHHHHHh
Confidence 9988764
No 237
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=56.50 E-value=32 Score=36.72 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=44.9
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||+|+..-|.+-. .|-.-+...-=.++.++.. +.--..+.|++..-... -|...+- .....+
T Consensus 94 ~~~kp~Iaav~G~a~G-gG~~lal~cD~ria~~~a~----f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l-------- 160 (259)
T PRK06688 94 ALPKPVVAAVNGPAVG-VGVSLALACDLVYASESAK----FSLPFAKLGLCPDAGGSALLPRLIGRARAAEM-------- 160 (259)
T ss_pred cCCCCEEEEECCeeec-HHHHHHHhCCEEEecCCCE----ecCchhhcCCCCCcchhhHHHHHhhHHHHHHH--------
Confidence 3789999999999875 2555555444444444432 33334556765322111 1221110 111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
-....+++..+|++.|++
T Consensus 161 ----~l~g~~~~a~eA~~~Glv 178 (259)
T PRK06688 161 ----LLLGEPLSAEEALRIGLV 178 (259)
T ss_pred ----HHhCCccCHHHHHHcCCc
Confidence 234567888899999986
No 238
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=56.31 E-value=1.5e+02 Score=32.28 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=84.4
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--cc---cCCccccccCCCCc----ccccc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GL---KPGCFKIGNTGGMM----DNILH 354 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii---~p~~~~ig~~~g~~----~~~~~ 354 (806)
++..+-+-+...+|..+ +. ++.......+.++++++++.+|.|++.. +. .|..+++..+.... ..+.
T Consensus 59 a~~~~~~li~~~~v~av--iG-~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~- 134 (345)
T cd06338 59 AARAYERLITQDKVDFL--LG-PYSSGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEML- 134 (345)
T ss_pred HHHHHHHHHhhcCccEE--ec-CCcchhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHH-
Confidence 33333344443455533 22 2333345567778888999999887532 11 11111111000000 0000
Q ss_pred cCCCC--CCCEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCc
Q psy16953 355 SKLYR--PGSVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGV 428 (806)
Q Consensus 355 ~~~~~--~G~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~ 428 (806)
.... ..+|+++.++...+..+. +.+++.|+-+......-. ...++...+..+.+ .+.++|++... .
T Consensus 135 -~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~d~~~~v~~l~~-~~~d~i~~~~~---~ 206 (345)
T cd06338 135 -VALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPP---GTADLSPLISKAKA-AGPDAVVVAGH---F 206 (345)
T ss_pred -HhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCC---CccchHHHHHHHHh-cCCCEEEECCc---c
Confidence 0122 457999999987665554 445555554443333321 23577888888755 44667777665 3
Q ss_pred ch-HHHHHHHHhcCCCCCEEEEEe
Q psy16953 429 EE-YEVCAALKDKRITKPLVAWCI 451 (806)
Q Consensus 429 ~d-~~f~~a~r~~~~~KPVV~lk~ 451 (806)
.+ ..|++.+++...+.|++..-.
T Consensus 207 ~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 207 PDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred hhHHHHHHHHHHcCCCCCEEEEec
Confidence 45 889999988777778776533
No 239
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=56.06 E-value=19 Score=41.95 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=57.9
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+.+|+++.+.++ |+. |+.. ..-.+++|+.+.+..++ .++||||----|+|| +++..+.+|+.+.+....
T Consensus 117 ~~ar~~~~~aGV--P~v-pgs~---~~~~~~ee~~~~a~~iG-yPVivKa~~GgGg~G----~r~v~~~~el~~a~~~~~ 185 (449)
T COG0439 117 ITARRLMAKAGV--PVV-PGSD---GAVADNEEALAIAEEIG-YPVIVKAAAGGGGRG----MRVVRNEEELEAAFEAAR 185 (449)
T ss_pred HHHHHHHHHcCC--CcC-CCCC---CCcCCHHHHHHHHHHcC-CCEEEEECCCCCccc----EEEECCHHHHHHHHHHHH
Confidence 568899999999 776 5552 11367899999999999 899999999999986 899999999988877655
Q ss_pred CC
Q psy16953 89 GK 90 (806)
Q Consensus 89 g~ 90 (806)
+.
T Consensus 186 ~e 187 (449)
T COG0439 186 GE 187 (449)
T ss_pred HH
Confidence 43
No 240
>PRK10949 protease 4; Provisional
Probab=55.68 E-value=15 Score=44.62 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=51.6
Q ss_pred CHHHHHHHhhcCCCccEEEEEEcc-CC--cch-HHHHHHHHhcC-CCCCEEEEEeCcCcCcCccc--------ccccccC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEV-GG--VEE-YEVCAALKDKR-ITKPLVAWCIGTCASMFTSE--------VQFGHAG 468 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Ei-gg--~~d-~~f~~a~r~~~-~~KPVV~lk~Grs~~~~g~~--------aa~sHtG 468 (806)
++.+.|+...+||+++.|++.++- || ... +++.+++++.+ .+|||+++ ...... +.= .-+..+|
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s--~~YyLASaAD~I~l~P~G 175 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQ--GQYYLASFANKIYLSPQG 175 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccc--hhhhhhhhCCEEEECCCc
Confidence 455566667799999999999982 22 223 56777777764 57999997 222221 111 1122244
Q ss_pred CcCCCCcc-cHHHHHHHHHHcCCcc
Q psy16953 469 SCANSDAE-TAVVKNKSLAQAGAHV 492 (806)
Q Consensus 469 alag~~~~-~a~~~~aa~~qaGvi~ 492 (806)
.+.-..-. ....+..+|.+.||-.
T Consensus 176 ~v~~~G~~~~~~~~k~lLdKlGV~~ 200 (618)
T PRK10949 176 VVDLHGFATNGLYYKSLLDKLKVST 200 (618)
T ss_pred eEEEeeeecchhhHHHHHHHcCCeE
Confidence 33211111 1123788999999865
No 241
>PLN02712 arogenate dehydrogenase
Probab=55.64 E-value=53 Score=40.38 Aligned_cols=92 Identities=10% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+..+|.|+|.+. ...+.|.+.|+ +|+-++++...+. ..+.++..+.+..+++....|+.++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~-----------~V~~~dr~~~~~~---A~~~Gv~~~~d~~e~~~~~aDvViL-- 114 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH-----------TVLAHSRSDHSLA---ARSLGVSFFLDPHDLCERHPDVILL-- 114 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHH---HHHcCCEEeCCHHHHhhcCCCEEEE--
Confidence 556899999752 23567777775 4555555321110 1234566678888843345677666
Q ss_pred ecCChhhHHHHHHHhcCCCC--CEEEEEcCCCCH
Q psy16953 278 FASLRSAYDSTIETLGFPQI--RSIAIIAEGIPE 309 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gv--k~~viis~Gf~E 309 (806)
++|...+..+++++..... ..+|+=.....+
T Consensus 115 -avP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~ 147 (667)
T PLN02712 115 -CTSIISTENVLKSLPLQRLKRNTLFVDVLSVKE 147 (667)
T ss_pred -cCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcH
Confidence 6677788888888742122 244443444444
No 242
>PRK05586 biotin carboxylase; Validated
Probab=55.59 E-value=21 Score=41.43 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=42.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|++|.+++. |++ |.... ..++++++.+...-++ .|+||||-.--++| | |.+..+.+|+++.+++
T Consensus 117 ~~~k~~l~~~GI--pvp-~~~~~---~~~~~~e~~~~~~~ig-yPvvvKP~~gggg~---G-v~~v~~~~el~~a~~~ 183 (447)
T PRK05586 117 SNAREIMIKAGV--PVV-PGSEG---EIENEEEALEIAKEIG-YPVMVKASAGGGGR---G-IRIVRSEEELIKAFNT 183 (447)
T ss_pred HHHHHHHHHCCC--CCC-CCccc---ccCCHHHHHHHHHHcC-CCEEEEECCCCCCC---e-eEEECCHHHHHHHHHH
Confidence 445677777766 555 33211 1457787776555555 69999997744333 3 4455588998887764
No 243
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=55.45 E-value=21 Score=39.07 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=41.2
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.-+-.|++|.+++. |++ +..+. + +.... . +-++ -|+||||-.--+.+| |.+..|.+|+++++++
T Consensus 98 DK~~~k~~l~~~gI--ptp-~~~~~--~---~~~~~--~-~~~~-~P~vVKP~~ggss~G----v~~v~~~~eL~~a~~~ 161 (296)
T PRK14569 98 DKMISKEILMHHRM--PTP-MAKFL--T---DKLVA--E-DEIS-FPVAVKPSSGGSSIA----TFKVKSIQELKHAYEE 161 (296)
T ss_pred CHHHHHHHHHHCCC--CCC-CeEEE--c---hhhhh--H-hhcC-CCEEEEeCCCCCCcC----eEEcCCHHHHHHHHHH
Confidence 34567899999988 665 44331 1 11111 1 1233 699999987433332 6666789999999887
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
..
T Consensus 162 ~~ 163 (296)
T PRK14569 162 AS 163 (296)
T ss_pred HH
Confidence 53
No 244
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=55.43 E-value=26 Score=37.88 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccC-C----hhhHHHHHHHHHHhhhhCCc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPS-S----FDTLGDIIGSVYKDLVSRGD 515 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~-~----~~EL~~~~~all~~L~~~g~ 515 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|+..+. . +-.++...+ ...+
T Consensus 107 ~~~kPvIaav~G~a~G-gG~~LalacD~ria~~~a~----f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~--A~~l----- 174 (276)
T PRK05864 107 RLHQPVIAAVNGPAIG-GGLCLALAADIRVASSSAY----FRAAGINNGLTASELGLSYLLPRAIGSSR--AFEI----- 174 (276)
T ss_pred hCCCCEEEEECCEeeh-hHHHHHHhCCEEEeeCCCE----ecCcccccCCCCCCcchheehHhhhCHHH--HHHH-----
Confidence 3789999999998875 2555555555455554432 33333445655321 1 122211111 1122
Q ss_pred cccCCCCCCCCCcccchHHhhcccc
Q psy16953 516 IVPQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 516 i~~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...|++..+|++.|++
T Consensus 175 -------~l~g~~~~a~eA~~~Glv 192 (276)
T PRK05864 175 -------MLTGRDVDAEEAERIGLV 192 (276)
T ss_pred -------HHcCCccCHHHHHHcCCc
Confidence 134557888899999985
No 245
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=55.31 E-value=18 Score=47.22 Aligned_cols=66 Identities=6% Similarity=-0.107 Sum_probs=46.7
Q ss_pred hchHHHHHhhCCCCccccc-ccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAK-CRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|+++.++++ |+. | ..+ .+|.+|+.+...-++ .++||||...-+++ +|.+..|.+|+++.+++.
T Consensus 116 ~~ar~ll~~~GV--Pt~-p~~~l-----v~s~dea~~~a~~ig-yPvVVKP~~ggGG~----GV~iv~~~eEL~~a~~~~ 182 (1201)
T TIGR02712 116 HTARELAEAAGV--PLL-PGTGL-----LSSLDEALEAAKEIG-YPVMLKSTAGGGGI----GMQKCDSAAELAEAFETV 182 (1201)
T ss_pred HHHHHHHHHCCC--CCC-Cceee-----cCCHHHHHHHHHhcC-CeEEEEECCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 467788888877 554 3 223 567888877665565 79999999876654 366667899998777654
No 246
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=55.10 E-value=42 Score=38.83 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATV 332 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~ 332 (806)
..+++++.|.+.++..+++ |.-.-+...+.+.+++.|+.++||+..
T Consensus 56 d~~~l~~~a~~~~iD~Vv~---g~E~~l~~glad~~~~~Gip~~Gp~~~ 101 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVV---GPEDPLVAGFADWAAELGIPCFGPDSY 101 (426)
T ss_pred CHHHHHHHHHHcCCCEEEE---CCchHHHHHHHHHHHHcCCCcCCCHHH
Confidence 4567777787788887775 222235566777788889999999754
No 247
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=55.00 E-value=68 Score=36.14 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecC--CCcccccccceeecccccccHH-HHhccCCCee
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTG--DHKLKFYWGHKEVLIPVYKKME-DAMSKNKDAD 273 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp--~~~~~~~~g~~~i~~p~y~sv~-daip~~~Dla 273 (806)
...+|+|+|+++.. ++-|.+.+| |. .++..+.. ..++++.++..+ ..+..++ +++ ...|++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h------P~--~~l~~las~rsaGk~~~~~~~~---~~v~~~~~~~~-~~~D~v 73 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF------PY--SSLKMLASARSAGKKVTFEGRD---YTVEELTEDSF-DGVDIA 73 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC------Cc--ceEEEEEccCCCCCeeeecCce---eEEEeCCHHHH-cCCCEE
Confidence 45689999999875 444444344 22 12322211 222222222111 1222222 224 446765
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC----------CHHHHHHHHHHHH---HcCCeEEccCcc
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI----------PENMTRKLNLLAK---EKGVSIIGPATV 332 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf----------~E~~~~~l~~~a~---~~giriiGPN~~ 332 (806)
++ +.|..........+.++|++ +|=.|+-| ||-.-+.|.. ++ +.+-.|-.|||.
T Consensus 74 f~---a~p~~~s~~~~~~~~~~g~~-VIDlS~~fR~~~~~p~~vPEvn~~~i~~-~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 74 LF---SAGGSISKKFGPIAVDKGAV-VVDNSSAFRMEEGVPLVIPEVNPEAMKH-IKLGKGKGALIANPNCS 140 (344)
T ss_pred EE---CCCcHHHHHHHHHHHhCCCE-EEECCchhhcCCCCceECCCcCHHHHHh-hhhcccCCcEEECCCcH
Confidence 54 77887777777777667765 44456544 3422223333 22 124478889984
No 248
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=54.92 E-value=35 Score=36.55 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHHHHHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDIIGSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~~all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-..+..+-=.++.++.. +---.-+.|++..--... +..........+
T Consensus 99 ~~~kPvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l--------- 164 (260)
T PRK07827 99 ELPKPVIAAIDGHVRA-GGFGLVGACDIVVAGPEST----FALTEARIGVAPAIISLTLLPRLSPRAAARY--------- 164 (260)
T ss_pred hCCCCEEEEEcCeeec-chhhHHHhCCEEEEcCCCE----EeCcccccCCCCCcccchhHHhhhHHHHHHH---------
Confidence 4789999999998865 2445445554444444432 333445566642111111 111111111222
Q ss_pred CCCCCCCCcccchHHhhccccc
Q psy16953 520 PELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=-...+++..+|++.|++.
T Consensus 165 ---~l~g~~~~a~eA~~~Glv~ 183 (260)
T PRK07827 165 ---YLTGEKFGAAEAARIGLVT 183 (260)
T ss_pred ---HHhCCccCHHHHHHcCCcc
Confidence 2356678899999999874
No 249
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=54.90 E-value=41 Score=37.74 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=42.7
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|+|+|+++.. ++.|.+.+| |.+.-.++--+...++++.|....+-+.-. +..+ + ..+|++++ +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h------p~~~l~~~as~~~~g~~~~~~~~~~~~~~~-~~~~-~-~~~D~v~~---a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF------PIDKLVLLASDRSAGRKVTFKGKELEVNEA-KIES-F-EGIDIALF---S 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC------ChhhEEEEeccccCCCeeeeCCeeEEEEeC-ChHH-h-cCCCEEEE---C
Confidence 58899999875 455555444 222211121222333444443222211111 2333 4 45676555 7
Q ss_pred CChhhHHHHHHHhcCCCCC
Q psy16953 280 SLRSAYDSTIETLGFPQIR 298 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk 298 (806)
.+........+...++|++
T Consensus 69 ~g~~~s~~~a~~~~~~G~~ 87 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAI 87 (339)
T ss_pred CCHHHHHHHHHHHHHCCCE
Confidence 7887777777777667773
No 250
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=54.51 E-value=33 Score=34.92 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEe---CcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCI---GTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~---Grs~~ 456 (806)
+...|+.+.+|+ ++.|++++. .||.-+ ..++..+++ ..||||++.. |.+..
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~--~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA--SPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh--CCCCEEEEEecCCCCchh
Confidence 566777777766 899999988 666544 667777764 6799999987 66553
No 251
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=54.32 E-value=32 Score=36.76 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=41.5
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+.=.++.++.. +.--.-+.|+.-.-. ..-|...+- .....+
T Consensus 95 ~~~kPvIaav~G~a~G-gG~~lal~cD~~va~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 161 (260)
T PRK05809 95 NLDKPVIAAINGFALG-GGCELSMACDIRIASEKAK----FGQPEVGLGITPGFGGTQRLARIVGPGKAKEL-------- 161 (260)
T ss_pred cCCCCEEEEEcCeeec-HHHHHHHhCCEEEeeCCCE----EeCcccccCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2444444443333333322 222234456542111 111211110 111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 162 ----~l~g~~~~a~eA~~~Glv 179 (260)
T PRK05809 162 ----IYTGDMINAEEALRIGLV 179 (260)
T ss_pred ----HHhCCCCCHHHHHHcCCC
Confidence 235567888889999986
No 252
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=54.24 E-value=48 Score=35.87 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.- +..-.-+.|+...-- ..-|...+- .....+
T Consensus 109 ~~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l-------- 175 (275)
T PLN02664 109 QCRKPVIAAIHGACIG-GGVDIVTACDIRYCSEDAF----FSVKEVDLAITADLGTLQRLPSIVGYGNAMEL-------- 175 (275)
T ss_pred hCCCCEEEEECCcccc-chHHHHHhCCEEEecCCCE----eccHHHhhCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999999875 2555555554455555443 444455667653211 111111110 111122
Q ss_pred CCCCCCCCCcccchHHhhccccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=....+++..+|++.|++.
T Consensus 176 ----~ltg~~~~a~eA~~~GLv~ 194 (275)
T PLN02664 176 ----ALTGRRFSGSEAKELGLVS 194 (275)
T ss_pred ----HHhCCCCCHHHHHHcCCCc
Confidence 2356688889999999863
No 253
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=54.15 E-value=87 Score=35.89 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEE-EEEEc--cCCcch-HH
Q psy16953 357 LYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMI-VLLGE--VGGVEE-YE 432 (806)
Q Consensus 357 ~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I-~ly~E--igg~~d-~~ 432 (806)
...||.-.+|...|.+|.-..+++.+.|.-+...-.--++ .++..|+-+.|..||+.+++ ++|.| .|=+.+ ++
T Consensus 76 l~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~---~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~ 152 (383)
T COG0075 76 LVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE---AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKE 152 (383)
T ss_pred ccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC---CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHH
Confidence 4678999999999999999999999999887766555555 78899999999999998755 56899 222334 77
Q ss_pred HHHHHHhc
Q psy16953 433 VCAALKDK 440 (806)
Q Consensus 433 f~~a~r~~ 440 (806)
+.+++++.
T Consensus 153 I~~~~k~~ 160 (383)
T COG0075 153 IAKAAKEH 160 (383)
T ss_pred HHHHHHHc
Confidence 88888773
No 254
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.02 E-value=70 Score=37.42 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcc
Q psy16953 74 NTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGK 153 (806)
Q Consensus 74 ~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~ 153 (806)
+.+++.++..++..-+ -++..|+||..+-.++. ++++.+.+ .. .. .+-..|++.+...+-|.+...
T Consensus 331 ahNp~a~~~al~~~~~--~~i~~i~Gg~~k~kd~~----~l~~~l~~-----~~--~~-~v~~~g~~~~r~~~~l~~~~~ 396 (468)
T PRK04690 331 STTPHASLAALDCFAG--RRVALLVGGHDRGLDWT----DFAAHMAQ-----RA--PL-EIVTMGANGPRIHALLAPLAA 396 (468)
T ss_pred CCCHHHHHHHHHhccC--CcEEEEEcCCCCCCCHH----HHHHHHHh-----cc--Ce-EEEEeCCCHHHHHHHHHhccc
Confidence 4588888888855322 26888999986554544 58778766 11 11 222456776777666665443
Q ss_pred cCCccEEEeCCcchHHHHHHHHhcC
Q psy16953 154 TLGIPLFVFGPETHMTAIVGMALGK 178 (806)
Q Consensus 154 ~~g~~i~~~~~~~~m~~~~~~a~~~ 178 (806)
+.+.++.++.+ |.+|++.|.+.
T Consensus 397 ~~~~~~~~~~~---~~~Av~~A~~~ 418 (468)
T PRK04690 397 AGRFGLHAADD---LAHAVRLARTA 418 (468)
T ss_pred ccCCceEEcCC---HHHHHHHHHHH
Confidence 44567888887 99999999873
No 255
>PRK05869 enoyl-CoA hydratase; Validated
Probab=53.64 E-value=29 Score=36.39 Aligned_cols=83 Identities=23% Similarity=0.139 Sum_probs=43.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-.. |-.-+.++-=.++.++.. +.--.-+.|++-.--. .-|...+- .....+
T Consensus 97 ~~~kPvIAav~G~a~Gg-G~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l-------- 163 (222)
T PRK05869 97 AIPKPTVAAITGYALGA-GLTLALAADWRVSGDNVK----FGATEILAGLAPSGDGMARLTRAAGPSRAKEL-------- 163 (222)
T ss_pred hCCCCEEEEEcCEeecH-HHHHHHhCCEEEecCCCE----EcCchhccCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 47899999999988752 444444444344443322 3333345565432211 11221110 011111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 164 ----~ltg~~~~a~eA~~~Glv 181 (222)
T PRK05869 164 ----VFSGRFFDAEEALALGLI 181 (222)
T ss_pred ----HHcCCCcCHHHHHHCCCC
Confidence 235567888999999986
No 256
>PLN02888 enoyl-CoA hydratase
Probab=53.28 E-value=37 Score=36.57 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +-.-.-+.|++..-.... |...+- .....+
T Consensus 97 ~~~kPvIaav~G~a~G-gG~~lal~cD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 163 (265)
T PLN02888 97 RCRKPIIGAINGFAIT-AGFEIALACDILVASRGAK----FIDTHAKFGIFPSWGLSQKLSRIIGANRAREV-------- 163 (265)
T ss_pred hCCCCEEEEECCeeec-hHHHHHHhCCEEEecCCCE----ecCccccccCCCCccHhhHHHHHhCHHHHHHH--------
Confidence 3689999999998875 2555555555455555543 333445667753222111 111110 011111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 164 ----~ltg~~~~a~eA~~~Glv 181 (265)
T PLN02888 164 ----SLTAMPLTAETAERWGLV 181 (265)
T ss_pred ----HHhCCccCHHHHHHcCCc
Confidence 124457888889999986
No 257
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=53.14 E-value=3.7e+02 Score=30.48 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=109.3
Q ss_pred ccccHHHHhc-c-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 258 VYKKMEDAMS-K-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 258 ~y~sv~daip-~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
+|..+.. +. + .-..-|| .++.--....+-=+|...|+|+.|+...+-|....+.++.+- ..+.+.|-|.-==.
T Consensus 60 A~n~i~~-Ls~e~~~~~gVi--aaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~G--aeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSS-LSEEEERAAGVI--AASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYG--AEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHh-cChhhhhcCceE--EecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcC--CEEEEECCCHHHHH
Confidence 5555555 44 2 1222233 566655666667777788999999988888763333322221 11333333320000
Q ss_pred cCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CC
Q psy16953 336 KPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DP 414 (806)
Q Consensus 336 ~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp 414 (806)
.-. .++--..|+ +|.|.+. +--++.-=|+++.|+++.+.+. -=.-+|++|+- ++ .+-+.-|+.+ .|
T Consensus 135 ~~a-~~~a~~~G~--~~i~pfD----~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGG---GL-isGia~~~k~~~p 201 (347)
T COG1171 135 AAA-EELAEEEGL--TFVPPFD----DPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGG---GL-ISGIATALKALSP 201 (347)
T ss_pred HHH-HHHHHHcCC--EEeCCCC----CcceeecccHHHHHHHHhcccc--CCEEEEecCcc---HH-HHHHHHHHHHhCC
Confidence 000 000000111 1222111 1235666799999999876553 23567788876 21 1223333333 67
Q ss_pred CccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEE-eCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCccc
Q psy16953 415 EVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWC-IGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVP 493 (806)
Q Consensus 415 ~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk-~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v 493 (806)
+||+|.+--| +. ..+.++++. +++++.+. .++-.. ..+..+-|. ..|+-+-+-.-=++.
T Consensus 202 ~~~vIGVEp~--~a--~~~~~Sl~~---G~~~~~~~~~~tiaD----G~av~~~g~---------~tf~i~~~~vd~~v~ 261 (347)
T COG1171 202 EIKVIGVEPE--GA--PSMYASLKA---GKIVVVLPDVGTIAD----GLAVKRPGD---------LTFEILRELVDDIVL 261 (347)
T ss_pred CCeEEEEeeC--CC--hHHHHHHHc---CCceeecCCCCcccc----ccccCCCCH---------HHHHHHHHcCCcEEE
Confidence 8999998555 33 455555543 55666665 666664 344444332 224433333332333
Q ss_pred CChhhHHHHHHHHHHhh
Q psy16953 494 SSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 494 ~~~~EL~~~~~all~~L 510 (806)
=|-+|+...++.++...
T Consensus 262 V~e~ei~~am~~l~~~~ 278 (347)
T COG1171 262 VDEDEICAAMRDLFERT 278 (347)
T ss_pred ECHHHHHHHHHHHHhcC
Confidence 34467888887777664
No 258
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=52.97 E-value=3.1e+02 Score=31.18 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCceEEEEccChhH----HHhhhhccc
Q psy16953 200 QEQTKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~----~~~ll~~gf 223 (806)
....+|+|.|.++.. ++.|++.||
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 356689999998764 677888887
No 259
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=52.61 E-value=27 Score=38.79 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=58.8
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEe-ecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYP-FTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iyp-vnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+.+|.|+|.+. ...++|+++|+ .+.- .+++. +..- -..+.|+.++ +..+++ +..|+.++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~-----------~Viv~~~~~~-~~~~-~a~~~Gv~~~-s~~ea~-~~ADiVvL-- 65 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL-----------NVIVGLRKGG-ASWK-KATEDGFKVG-TVEEAI-PQADLIMN-- 65 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC-----------eEEEEECcCh-hhHH-HHHHCCCEEC-CHHHHH-hcCCEEEE--
Confidence 56799999764 34789999886 2322 22211 0000 0002244444 577744 44566555
Q ss_pred ecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 278 FASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
.++|......+++++.. ..-..+|.++.||+-+..+.... ....+-.+=||+.|-
T Consensus 66 aVpp~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~~~~--~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 66 LLPDEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQIVPP--KDVDVVMVAPKGPGT 121 (314)
T ss_pred eCCcHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccccCC--CCCcEEEECCCCCcH
Confidence 55555366666655532 11125899999998643322110 112344556776553
No 260
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=52.47 E-value=2.5e+02 Score=27.97 Aligned_cols=189 Identities=13% Similarity=0.076 Sum_probs=97.9
Q ss_pred ccccccHHHHhccC-CCeeEEEeecCC-hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 256 IPVYKKMEDAMSKN-KDADVLVNFASL-RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 256 ~p~y~sv~daip~~-~Dlavivi~~~~-~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
...+..+.+++.+. ..+.+++..... .......++.+...++..+++... ...... +.+.+++.++.++.+++..
T Consensus 16 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~--~~~~~~-~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 16 AQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS--SSSALA-VVELAAAAGIPVVSLDATA 92 (269)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC--CHHHHH-HHHHHHHcCCcEEEecCCC
Confidence 34555555544441 334444222211 124555666666677876665433 222222 6777888899999887643
Q ss_pred cc---cCCccccccCCC----CcccccccCCCCCCCEEEEeCCh-hHHH----HHHHHHHhcCCceeEEEeecCCCCCCC
Q psy16953 334 GL---KPGCFKIGNTGG----MMDNILHSKLYRPGSVAYVSRSG-GMSN----ELNNIISKATNGVYEGVAIGGDRYPGT 401 (806)
Q Consensus 334 ii---~p~~~~ig~~~g----~~~~~~~~~~~~~G~ValvSQSG-~l~~----~l~~~~~~~g~G~s~~vs~Gn~~~~d~ 401 (806)
-. .+....++.... .....+ ......+|+++.... .... .+.+.+.+.++-+......... .+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 168 (269)
T cd01391 93 PDLTGYPYVFRVGPDNEQAGEAAAEYL--AEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLD--TEK 168 (269)
T ss_pred CccCCCceEEEEcCCcHHHHHHHHHHH--HHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCC--ccc
Confidence 21 111111110000 000000 012467899997766 3332 2333444555333333333333 346
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCC-CCEEEEEeCcCc
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRIT-KPLVAWCIGTCA 455 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~-KPVV~lk~Grs~ 455 (806)
++..+...+.+.|+.++|++... .. ..+++++++.... +.+.++-.+.+.
T Consensus 169 ~~~~~~~~l~~~~~~~~i~~~~~----~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 169 GFQALLQLLKAAPKPDAIFACND----EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred cHHHHHHHHhcCCCCCEEEEcCc----hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 78888899998888888877654 44 7788888876542 445544444333
No 261
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=52.47 E-value=29 Score=37.40 Aligned_cols=83 Identities=17% Similarity=0.048 Sum_probs=42.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|+....-... |...+ ......+
T Consensus 104 ~~~kPvIAav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 170 (268)
T PRK07327 104 NCDKPIVSAIHGPAVG-AGLVAALLADISIAAKDAR----IIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYY-------- 170 (268)
T ss_pred cCCCCEEEEEcCeeee-hhhHHHHhCCEEEecCCCE----EeCcccccCCCCCcchhhHHHHHhCHHHHHHH--------
Confidence 4689999999888764 2444444443333443332 222333456653221111 11110 0111112
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....|++..+|++.|++
T Consensus 171 ----~ltg~~~~a~eA~~~Glv 188 (268)
T PRK07327 171 ----LLLCEPVSGEEAERIGLV 188 (268)
T ss_pred ----HHcCCccCHHHHHHcCCc
Confidence 135567888899999986
No 262
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=52.45 E-value=32 Score=37.51 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.9
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCC-CC-CEEEEEcCCCCHHHHHHHHHHHHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFP-QI-RSIAIIAEGIPENMTRKLNLLAKE 321 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~-gv-k~~viis~Gf~E~~~~~l~~~a~~ 321 (806)
.....+.++ ..+..|+.++ +++...++++++.+... .- ..++.++.|+.....+++.+..++
T Consensus 59 ~~~~~~~~~-~~~~~D~vi~---~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~ 122 (325)
T PRK00094 59 LRATTDLAE-ALADADLILV---AVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE 122 (325)
T ss_pred eEEeCCHHH-HHhCCCEEEE---eCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH
Confidence 344567777 4455676555 55667888888877521 11 234555668875333334444443
No 263
>PRK08139 enoyl-CoA hydratase; Validated
Probab=52.43 E-value=20 Score=38.69 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHH-HHHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDII-GSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~-~all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-+-+..+-=.++.++.. +.--.-+.|++..-...-|...+ ......+
T Consensus 102 ~~~kPvIAav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l--------- 167 (266)
T PRK08139 102 ALPQPVIARVHGIATA-AGCQLVASCDLAVAADTAR----FAVPGVNIGLFCSTPMVALSRNVPRKQAMEM--------- 167 (266)
T ss_pred hCCCCEEEEECceeeH-HHHHHHHhCCEEEEeCCCE----EeCcccCcCCCCCccHHHHHHHhCHHHHHHH---------
Confidence 3789999999998875 2444444443333433332 22233456664221111111111 0111112
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-..-+++..+|++.|++
T Consensus 168 ---~ltg~~~~a~eA~~~GLv 185 (266)
T PRK08139 168 ---LLTGEFIDAATAREWGLV 185 (266)
T ss_pred ---HHcCCccCHHHHHHcCCc
Confidence 235567778888888875
No 264
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=52.38 E-value=2.5e+02 Score=33.58 Aligned_cols=88 Identities=15% Similarity=0.306 Sum_probs=58.9
Q ss_pred HHHHHHHHHHc---CCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcc-----cCceEEEEEcCCCH------HH
Q psy16953 78 KGAQSWISERM---GKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIE-----HKISIFVRRAGPNY------QE 143 (806)
Q Consensus 78 ~e~~~~~~~~~---g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~-----~~~~ivvR~~G~n~------~e 143 (806)
+|.++|++... +-+|-+.=|+|-+=.-.-. =+++|+++++....+ ..+..|--+...++ |-
T Consensus 119 ~ei~~~i~~~~~~~~~d~~i~EiGGTvGDiEs~-----pf~ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQh 193 (525)
T TIGR00337 119 NEIKDRIKRVAKISGPDVVIVEIGGTVGDIESL-----PFLEAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQH 193 (525)
T ss_pred HHHHHHHHHhcccCCCCEEEEEeCCcccccccc-----HHHHHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHH
Confidence 78999999876 4455555566655433332 278999998766543 23344444544333 67
Q ss_pred HHHHHHHhcccCCc--cEEEeCCcchHHHHHHH
Q psy16953 144 GLRIIREVGKTLGI--PLFVFGPETHMTAIVGM 174 (806)
Q Consensus 144 G~~~l~~~g~~~g~--~i~~~~~~~~m~~~~~~ 174 (806)
..+-||.. || ++.++.+|.++++-++.
T Consensus 194 sv~~lr~~----Gi~pd~~~~R~~~~l~~~~~~ 222 (525)
T TIGR00337 194 SVKELRSL----GIQPDIIICRSSEPLDPSTKD 222 (525)
T ss_pred HHHHHHhC----CCCCCEEEEecCCCCCHHHHH
Confidence 88999998 46 68999999998776654
No 265
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=52.30 E-value=26 Score=41.14 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=43.6
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|+++.+++. |++ |... .....+++++.+...-++ .|+||||-.--|+| +|.+..+.+|+++++++
T Consensus 116 ~~~k~~l~~~gI--pvp-p~~~--~~~~~~~~~~~~~~~~ig-yPvvvKP~~ggGg~----Gv~iv~~~~eL~~a~~~ 183 (478)
T PRK08463 116 NIARYLMKKNGI--PIV-PGTE--KLNSESMEEIKIFARKIG-YPVILKASGGGGGR----GIRVVHKEEDLENAFES 183 (478)
T ss_pred HHHHHHHHHcCC--CCC-CCcc--ccCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ceEEeCCHHHHHHHHHH
Confidence 345667777766 553 3222 011347787776655565 69999998765444 45666788999888774
No 266
>PLN02735 carbamoyl-phosphate synthase
Probab=52.26 E-value=21 Score=46.34 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=47.6
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
..|++|.+++. |++ +... .++++++.....-++.-|+||||..--|++| +.+..|.+|+++.+++.+
T Consensus 147 ~~k~~l~~~GI--pvp-~~~~-----v~s~eea~~~~~~iG~yPvVVKP~~~~GG~G----v~iv~n~eEL~~a~~~a~ 213 (1102)
T PLN02735 147 LFKQAMEKIGL--KTP-PSGI-----ATTLDECFEIAEDIGEFPLIIRPAFTLGGTG----GGIAYNKEEFETICKAGL 213 (1102)
T ss_pred HHHHHHHHCCC--CCC-CeeE-----eCCHHHHHHHHHHhCCCCEEEEeCCCCCCCc----eEEECCHHHHHHHHHHHH
Confidence 45667777766 665 4444 4578887665555655699999998667663 457789999999987654
No 267
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=52.12 E-value=31 Score=37.04 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=43.9
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCccccC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~~ 519 (806)
..||||+..-|.+-. .|-.-+.++-=.++.++.. +.--.-+.|++-.-.... |...+ ......+
T Consensus 93 ~~kPvIAaV~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l--------- 158 (258)
T PRK06190 93 MRKPVIGAINGAAVT-GGLELALACDILIASERAR----FADTHARVGILPGWGLSVRLPQKVGIGRARRM--------- 158 (258)
T ss_pred CCCCEEEEECCEeec-HHHHHHHhCCEEEEeCCCE----EECcccccCcCCCccHHHHHHHHhCHHHHHHH---------
Confidence 789999999998875 2445555544444444432 222333556643322211 11111 1111122
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...+++..+|++.|++
T Consensus 159 ---~ltg~~~~a~eA~~~GLv 176 (258)
T PRK06190 159 ---SLTGDFLDAADALRAGLV 176 (258)
T ss_pred ---HHhCCccCHHHHHHcCCC
Confidence 345668888889999986
No 268
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=51.87 E-value=37 Score=36.24 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=47.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.- +..-.-+.|++..-.. .-|...+- .....+
T Consensus 90 ~~~kPvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l-------- 156 (255)
T PRK09674 90 AFNKPLIAAVNGYALG-AGCELALLCDIVIAGENAR----FGLPEITLGIMPGAGGTQRLIRSVGKSLASQM-------- 156 (255)
T ss_pred hCCCCEEEEECCEeeh-HHHHHHHhCCEEEecCCCE----EeCchhhcCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2555555554445554443 4444556776432221 11221111 111122
Q ss_pred CCCCCCCCCcccchHHhhccccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=-...+++..+|++.|++.
T Consensus 157 ----~l~g~~~~a~eA~~~Glv~ 175 (255)
T PRK09674 157 ----VLTGESITAQQAQQAGLVS 175 (255)
T ss_pred ----HHcCCccCHHHHHHcCCCc
Confidence 2355678889999999863
No 269
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=51.87 E-value=55 Score=35.84 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=58.1
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeec--ccccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL--IPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~--~p~y~sv~daip~~~Dlavivi 277 (806)
.+|.|+|.+. ...+.+.+.|+ .-.|+-++++......+ ...+ .....+..+++ +..|+.++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~---------~~~V~~~dr~~~~~~~a--~~~g~~~~~~~~~~~~~-~~aDvVii-- 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL---------AGEIVGADRSAETRARA--RELGLGDRVTTSAAEAV-KGADLVIL-- 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC---------CcEEEEEECCHHHHHHH--HhCCCCceecCCHHHHh-cCCCEEEE--
Confidence 5799999763 23566777664 33566666542100000 0112 12345666643 45676555
Q ss_pred ecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 278 FASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
++|.....++++++.. ..-..+|+..++......+++.+.. ..+++++|-.
T Consensus 73 -avp~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~h 124 (307)
T PRK07502 73 -CVPVGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGH 124 (307)
T ss_pred -CCCHHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCC
Confidence 6666677777776642 1223455555666554444443332 2366766643
No 270
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=51.62 E-value=44 Score=35.74 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=43.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHH-HHHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDII-GSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~-~all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.- +.--.-+.|+. . ...-+...+ ......+
T Consensus 95 ~~~kPvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~-~-~~~~l~~~~g~~~a~~l--------- 158 (257)
T PRK06495 95 ECAKPVIAAVNGPALG-AGLGLVASCDIIVASENAV----FGLPEIDVGLA-G-GGKHAMRLFGHSLTRRM--------- 158 (257)
T ss_pred hCCCCEEEEECCeeeh-hHHHHHHhCCEEEecCCCE----eeChhhccCcc-c-cHHHHHHHhCHHHHHHH---------
Confidence 3689999999999875 2444444443334443332 33344556664 1 111122211 0111222
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 159 ---ll~g~~~~a~eA~~~GLv 176 (257)
T PRK06495 159 ---MLTGYRVPAAELYRRGVI 176 (257)
T ss_pred ---HHcCCeeCHHHHHHcCCc
Confidence 235567888999999986
No 271
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=51.22 E-value=21 Score=30.69 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=34.7
Q ss_pred EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCC---HHHHHHHHHHhcccCCccEE
Q psy16953 93 VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPN---YQEGLRIIREVGKTLGIPLF 160 (806)
Q Consensus 93 ~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n---~~eG~~~l~~~g~~~g~~i~ 160 (806)
|+++|+||...|+- ..++.+ ...++.++.|..-.. -++..+.+.+.-++.|+.++
T Consensus 1 ~vvViGgG~ig~E~--------A~~l~~-----~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIEL--------AEALAE-----LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHH--------HHHHHH-----TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECcCHHHHHH--------HHHHHH-----hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 68999999987763 235666 557889998887555 23333333333344466655
No 272
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=51.15 E-value=32 Score=36.74 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=40.8
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCccccC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~~ 519 (806)
..||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++..-..-. |...+ ......+
T Consensus 99 ~~kPvIaav~G~a~G-gG~~lal~cD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l--------- 164 (260)
T PRK05980 99 FPKPVIAAVNGLAFG-GGCEITEAVHLAIASERAL----FAKPEIRLGMPPTFGGTQRLPRLAGRKRALEL--------- 164 (260)
T ss_pred CCCCEEEEEcCEEEh-hhhHHhHhCCEEEecCCCE----ecCcccccCCCCCchHhhHHHhhcCHHHHHHH---------
Confidence 689999999988875 2444444433334433332 222334456543211111 11111 0001111
Q ss_pred CCCCCCCCcccchHHhhccccc
Q psy16953 520 PELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=-...+++..+|++.|++.
T Consensus 165 ---~l~g~~~~a~eA~~~Glv~ 183 (260)
T PRK05980 165 ---LLTGDAFSAERALEIGLVN 183 (260)
T ss_pred ---HHcCCccCHHHHHHcCCCC
Confidence 1244567888889999863
No 273
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=51.11 E-value=3.4e+02 Score=29.12 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc-cccC----CccccccCCCCc----ccccccCCC
Q psy16953 288 TIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG-GLKP----GCFKIGNTGGMM----DNILHSKLY 358 (806)
Q Consensus 288 ~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G-ii~p----~~~~ig~~~g~~----~~~~~~~~~ 358 (806)
+.+.+.+.+|. .|+....+. ....+..++++.++.+++|.+.. .+++ ..+++....... ..+.. ...
T Consensus 58 ~~~~li~~~v~--aiiG~~~s~-~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 133 (334)
T cd06342 58 VAQKLVDDGVV--GVVGHLNSG-VTIPASPIYADAGIVMISPAATNPKLTERGYKNVFRVVARDDQQGPAAAKYAV-ETL 133 (334)
T ss_pred HHHHHHhCCce--EEECCCccH-hHHHhHHHHHhCCCeEEecCCCCchhhcCCCceEEeccCCcHHHHHHHHHHHH-Hhc
Confidence 34444334443 344433333 44567788999999999997642 1111 112211000000 00100 112
Q ss_pred CCCCEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHH
Q psy16953 359 RPGSVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEV 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f 433 (806)
..-+|+++......+..+. ..+++.|+-+......... ..++...+.-+.+ ...++|++... ..+ ..|
T Consensus 134 ~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~d~~~~l~~i~~-~~~~~vi~~~~---~~~~~~~ 206 (334)
T cd06342 134 KAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDG---ATDFSAILTKIKA-ANPDAVFFGGY---YPEAGPL 206 (334)
T ss_pred CCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCC---CccHHHHHHHHHh-cCCCEEEEcCc---chhHHHH
Confidence 2346999998887666554 3444455544444444322 3567777777654 34456766554 334 778
Q ss_pred HHHHHhcCCCCCEE
Q psy16953 434 CAALKDKRITKPLV 447 (806)
Q Consensus 434 ~~a~r~~~~~KPVV 447 (806)
++.+++.....|++
T Consensus 207 ~~~~~~~g~~~~~~ 220 (334)
T cd06342 207 VRQMRQLGLKAPFM 220 (334)
T ss_pred HHHHHHcCCCCcEE
Confidence 88888866554544
No 274
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=51.06 E-value=98 Score=33.91 Aligned_cols=138 Identities=14% Similarity=0.202 Sum_probs=72.8
Q ss_pred EEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChh---HHHhhhhcccccccCCCccccee
Q psy16953 160 FVFGPETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMV 236 (806)
Q Consensus 160 ~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~i 236 (806)
..+++....+.++.++++..++ .+ ..++++|+|.+.- ..+.|..+|+ +|
T Consensus 126 a~~n~~~~Ae~ai~~al~~~~~----------------~l-~gk~v~IiG~G~iG~avA~~L~~~G~-----------~V 177 (287)
T TIGR02853 126 AIYNSIPTAEGAIMMAIEHTDF----------------TI-HGSNVMVLGFGRTGMTIARTFSALGA-----------RV 177 (287)
T ss_pred EEEccHhHHHHHHHHHHHhcCC----------------CC-CCCEEEEEcChHHHHHHHHHHHHCCC-----------EE
Confidence 4577777788888888865221 01 4568999998742 3567777774 67
Q ss_pred EeecCCCcccccccceeeccc--ccccHHHHhccCCCeeEEEeecCChhhH-HHHHHHhcCCCCCEEEE-EcCCCCHHHH
Q psy16953 237 YPFTGDHKLKFYWGHKEVLIP--VYKKMEDAMSKNKDADVLVNFASLRSAY-DSTIETLGFPQIRSIAI-IAEGIPENMT 312 (806)
Q Consensus 237 ypvnp~~~~~~~~g~~~i~~p--~y~sv~daip~~~Dlavivi~~~~~~~~-~~~le~~~~~gvk~~vi-is~Gf~E~~~ 312 (806)
+-+|.+.. +..+ ..+.+.. .|.++.+.+. ..|+ +++. .|...+ ...++.+. ++ .++| +++.=.+-
T Consensus 178 ~v~~R~~~-~~~~-~~~~g~~~~~~~~l~~~l~-~aDi--Vint-~P~~ii~~~~l~~~k-~~--aliIDlas~Pg~t-- 246 (287)
T TIGR02853 178 FVGARSSA-DLAR-ITEMGLIPFPLNKLEEKVA-EIDI--VINT-IPALVLTADVLSKLP-KH--AVIIDLASKPGGT-- 246 (287)
T ss_pred EEEeCCHH-HHHH-HHHCCCeeecHHHHHHHhc-cCCE--EEEC-CChHHhCHHHHhcCC-CC--eEEEEeCcCCCCC--
Confidence 76666531 1000 0011211 1345556333 3454 4444 454433 33455454 32 2333 33311111
Q ss_pred HHHHHHHHHcCCeEEc-cCccccccCC
Q psy16953 313 RKLNLLAKEKGVSIIG-PATVGGLKPG 338 (806)
Q Consensus 313 ~~l~~~a~~~giriiG-PN~~Gii~p~ 338 (806)
.+ +.|++.|++.+- |+-.|.+.|.
T Consensus 247 -df-~~Ak~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 247 -DF-EYAKKRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred -CH-HHHHHCCCEEEEeCCCCcccCch
Confidence 12 578899987765 7777777764
No 275
>KOG0409|consensus
Probab=51.02 E-value=63 Score=35.82 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=74.2
Q ss_pred CCceEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.+++|=.+|++ .....||+..|| +=.||-++...-|+| .+-|-.++.|-+| +.+..|..+.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~---------kVtV~dr~~~k~~~f----~~~Ga~v~~sPae-Vae~sDvvit-- 97 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY---------KVTVYDRTKDKCKEF----QEAGARVANSPAE-VAEDSDVVIT-- 97 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC---------EEEEEeCcHHHHHHH----HHhchhhhCCHHH-HHhhcCEEEE--
Confidence 46677788865 456899999999 667888887643333 3447899999999 8888776555
Q ss_pred ecCChhhHHHHH-HHhcC-C---CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 278 FASLRSAYDSTI-ETLGF-P---QIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 278 ~~~~~~~~~~~l-e~~~~-~---gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
.++....+.+++ ..++. . -.+...|-++-+.....++|.+.++..|.|++
T Consensus 98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v 152 (327)
T KOG0409|consen 98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV 152 (327)
T ss_pred EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE
Confidence 455554555443 33321 1 12333356666777888889888888777765
No 276
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=50.89 E-value=1.7e+02 Score=30.14 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=76.7
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc-----cCCccccccCCCC----cccccc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL-----KPGCFKIGNTGGM----MDNILH 354 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii-----~p~~~~ig~~~g~----~~~~~~ 354 (806)
....+++.+.+.++..++ ....+ .....+.+.+++.++.++.|++..-. +|..+.++..... ...+.-
T Consensus 54 ~~~~~~~~l~~~~v~~ii--g~~~~-~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (298)
T cd06268 54 AAAAAARELVDDGVDAVI--GPLSS-GVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLA 130 (298)
T ss_pred HHHHHHHHHHhCCceEEE--cCCcc-hhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHH
Confidence 344555666556776443 22222 23346778888999999999764311 1111111100000 000000
Q ss_pred cCCCC-CCCEEEEeCChhHHHHH----HHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 355 SKLYR-PGSVAYVSRSGGMSNEL----NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 355 ~~~~~-~G~ValvSQSG~l~~~l----~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
... ..+|++|......+.+. .+.+.+.|+-+......-.. ..++.+.+..+... ..++|++... + .
T Consensus 131 --~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~---~~~~~~~~~~l~~~-~~~~vi~~~~--~-~ 201 (298)
T cd06268 131 --EKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPG---ATDFSPLIAKLKAA-GPDAVFLAGY--G-G 201 (298)
T ss_pred --HhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCC---CccHHHHHHHHHhc-CCCEEEEccc--c-c
Confidence 112 45899998765544333 34445556444333222211 24567777776654 3456666554 3 4
Q ss_pred h-HHHHHHHHhcCCCCCEEE
Q psy16953 430 E-YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 430 d-~~f~~a~r~~~~~KPVV~ 448 (806)
+ ..|++++++...+.+++.
T Consensus 202 ~~~~~~~~~~~~g~~~~~~~ 221 (298)
T cd06268 202 DAALFLKQAREAGLKVPIVG 221 (298)
T ss_pred hHHHHHHHHHHcCCCCcEEe
Confidence 4 778888877555444443
No 277
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=50.60 E-value=39 Score=36.19 Aligned_cols=81 Identities=16% Similarity=-0.020 Sum_probs=41.6
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCcc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i 516 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.- +.--.-+.|++..-. +..++...++ ..+
T Consensus 93 ~~~kPvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a--~~l------ 159 (258)
T PRK09076 93 AFRGVSIAAINGYAMG-GGLECALACDIRIAEEQAQ----MALPEASVGLLPCAGGTQNLPWLVGEGWA--KRM------ 159 (258)
T ss_pred hCCCCEEEEECCEEec-HHHHHHHhCCEEEecCCCE----eeCcccccCCCCCccHHHHHHHHhCHHHH--HHH------
Confidence 3789999999888764 2444444443334443332 323334556653222 1111111111 111
Q ss_pred ccCCCCCCCCCcccchHHhhcccc
Q psy16953 517 VPQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 517 ~~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 160 ------~l~g~~~~a~eA~~~Glv 177 (258)
T PRK09076 160 ------ILCGERVDAATALRIGLV 177 (258)
T ss_pred ------HHcCCcCCHHHHHHCCCC
Confidence 124556788888889976
No 278
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=50.60 E-value=29 Score=37.01 Aligned_cols=83 Identities=22% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+.. .|-.-+..+-=.++.++.. +..-.-+.|++-..-.-. |...+ ......+
T Consensus 89 ~~~kPvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l-------- 155 (254)
T PRK08252 89 PPRKPLIAAVEGYALA-GGFELALACDLIVAARDAK----FGLPEVKRGLVAAGGGLLRLPRRIPYHIAMEL-------- 155 (254)
T ss_pred cCCCCEEEEECCEEeh-HHHHHHHhCCEEEEeCCCE----EeCchhhcCCCCCchHHHHHHHHcCHHHHHHH--------
Confidence 4789999999998874 2444444444445554443 444455567654222111 11110 0011111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-..-+++..+|++.|++
T Consensus 156 ----~l~g~~~~a~eA~~~Glv 173 (254)
T PRK08252 156 ----ALTGDMLTAERAHELGLV 173 (254)
T ss_pred ----HHcCCccCHHHHHHcCCc
Confidence 134557888889999975
No 279
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.18 E-value=95 Score=30.03 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhccc-CceEEEEEcCCCHHHHHHHHHHhc
Q psy16953 74 NTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEH-KISIFVRRAGPNYQEGLRIIREVG 152 (806)
Q Consensus 74 ~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~-~~~ivvR~~G~n~~eG~~~l~~~g 152 (806)
..+.++.-+.+.+ ....++.|.+=.+..-+ .++.++++|++ ... +++|++ +|....+=.+.+++.
T Consensus 39 ~~s~e~~v~aa~e---~~adii~iSsl~~~~~~---~~~~~~~~L~~-----~g~~~i~viv--GG~~~~~~~~~l~~~- 104 (132)
T TIGR00640 39 FQTPEEIARQAVE---ADVHVVGVSSLAGGHLT---LVPALRKELDK-----LGRPDILVVV--GGVIPPQDFDELKEM- 104 (132)
T ss_pred CCCHHHHHHHHHH---cCCCEEEEcCchhhhHH---HHHHHHHHHHh-----cCCCCCEEEE--eCCCChHhHHHHHHC-
Confidence 3455655555543 34555555544432222 34678899988 333 677777 775555556778887
Q ss_pred ccCCccEEEeCCcchHHHHHHHHhc
Q psy16953 153 KTLGIPLFVFGPETHMTAIVGMALG 177 (806)
Q Consensus 153 ~~~g~~i~~~~~~~~m~~~~~~a~~ 177 (806)
|+. .+|++.|++.+++....+
T Consensus 105 ---Gvd-~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 105 ---GVA-EIFGPGTPIPESAIFLLK 125 (132)
T ss_pred ---CCC-EEECCCCCHHHHHHHHHH
Confidence 564 789999999999988765
No 280
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=50.13 E-value=35 Score=44.18 Aligned_cols=65 Identities=8% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
|++|.+++. |++ +... .++.+++.+...-++ .|+||||..--+++ | +.+..+.+|+++.+++.++
T Consensus 133 k~~l~~~Gi--pvp-~~~~-----v~s~~e~~~~~~~ig-~PvVVKP~~g~gg~---G-v~iv~~~eeL~~a~~~~~~ 197 (1066)
T PRK05294 133 KEAMKKIGL--PVP-RSGI-----AHSMEEALEVAEEIG-YPVIIRPSFTLGGT---G-GGIAYNEEELEEIVERGLD 197 (1066)
T ss_pred HHHHHHCCc--CCC-Ceee-----eCCHHHHHHHHHHcC-CCeEEEcCCCCCCC---C-eEEECCHHHHHHHHHHHHh
Confidence 566666666 665 4444 467777766555565 69999998433333 3 4566689999988876553
No 281
>PRK07680 late competence protein ComER; Validated
Probab=49.92 E-value=39 Score=36.32 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=51.8
Q ss_pred eEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+.- ..++|++.|++ . .-.|+-.+++......+- +.. ++..+.+..++ ....|+.++ +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~----~---~~~v~v~~r~~~~~~~~~-~~~~g~~~~~~~~~~-~~~aDiVil---a 69 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAV----K---PSQLTITNRTPAKAYHIK-ERYPGIHVAKTIEEV-ISQSDLIFI---C 69 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC----C---cceEEEECCCHHHHHHHH-HHcCCeEEECCHHHH-HHhCCEEEE---e
Confidence 5788996532 36777777741 0 123554554321000000 111 35567788773 455676555 5
Q ss_pred CChhhHHHHHHHhcCC--CCCEEEEEcCCCCH
Q psy16953 280 SLRSAYDSTIETLGFP--QIRSIAIIAEGIPE 309 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~--gvk~~viis~Gf~E 309 (806)
+++..+.++++++... .=+.++-+++|+.-
T Consensus 70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~ 101 (273)
T PRK07680 70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISV 101 (273)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 5777788888887421 12467777888853
No 282
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=49.29 E-value=56 Score=35.18 Aligned_cols=82 Identities=21% Similarity=0.183 Sum_probs=44.8
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCcc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i 516 (806)
..+||||+..-|.+-. .|-.-+..+-=.++.++.. +.--+-+.|++..-. +..++...+ ...+
T Consensus 106 ~~~kPvIaav~G~a~G-gG~~lala~D~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~ig~~~--a~~l------ 172 (272)
T PRK06210 106 ALRKPVIAAINGACAG-IGLTHALMCDVRFAADGAK----FTTAFARRGLIAEHGISWILPRLVGHAN--ALDL------ 172 (272)
T ss_pred hCCCCEEEEECCeeeh-HHHHHHHhCCEEEEeCCCE----EechHHhcCCCCCCchhhhhHhhhCHHH--HHHH------
Confidence 3789999999998875 2445555444444544432 333344566643221 111111111 1111
Q ss_pred ccCCCCCCCCCcccchHHhhccccc
Q psy16953 517 VPQPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 517 ~~~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=....+++..+|++.|++.
T Consensus 173 ------~ltg~~~~a~eA~~~Glv~ 191 (272)
T PRK06210 173 ------LLSARTFYAEEALRLGLVN 191 (272)
T ss_pred ------HHcCCccCHHHHHHcCCcc
Confidence 1356778888899999863
No 283
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=49.06 E-value=2.9e+02 Score=32.05 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=56.8
Q ss_pred CCCCCEEEEeCChhHHHH----HHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCCcch-H
Q psy16953 358 YRPGSVAYVSRSGGMSNE----LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLLGEVGGVEE-Y 431 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~----l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly~Eigg~~d-~ 431 (806)
+.--.|++|.+....+.. +...+.+.|+-+.....+-... .+.++...+..+.+ +|++++|++|.+ + .+ +
T Consensus 184 ~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~lk~~~~da~vvv~~~~--~-~~~~ 259 (472)
T cd06374 184 YNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNA-GEQSFDRLLRKLRSRLPKARVVVCFCE--G-MTVR 259 (472)
T ss_pred CCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCC-chHHHHHHHHHHHhcCCCcEEEEEEec--h-HHHH
Confidence 345679999998775544 4445556666555444443221 24567778888776 799999999887 3 34 8
Q ss_pred HHHHHHHhcCCCCCE
Q psy16953 432 EVCAALKDKRITKPL 446 (806)
Q Consensus 432 ~f~~a~r~~~~~KPV 446 (806)
.|++++++.....+.
T Consensus 260 ~~l~~a~~~g~~~~~ 274 (472)
T cd06374 260 GLLMAMRRLGVGGEF 274 (472)
T ss_pred HHHHHHHHhcCCCce
Confidence 899998887655433
No 284
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=48.88 E-value=78 Score=36.37 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=64.9
Q ss_pred ceEEEEccCh--h-HHHhhhhcccccccCCCcccceeEeecCCCcc--cc-ccc-----ceeecccccccHHHHhccCCC
Q psy16953 203 TKAIVWGMQT--R-AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL--KF-YWG-----HKEVLIPVYKKMEDAMSKNKD 271 (806)
Q Consensus 203 t~v~V~G~~~--r-~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~--~~-~~g-----~~~i~~p~y~sv~daip~~~D 271 (806)
.+|+|+|.++ + +.++|...| .++|+-......+ ++ -.+ .-++..--.+.+.++|.+. |
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~----------d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~-d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG----------DGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF-D 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC----------CceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcC-C
Confidence 4789999853 2 255655555 3566655443000 00 000 0122355566777766666 6
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+++. +.|......++++|.+.|+..+- +|.. .+.. .++.+.|++.|+.++
T Consensus 71 ~VIn---~~p~~~~~~i~ka~i~~gv~yvD-ts~~-~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 71 LVIN---AAPPFVDLTILKACIKTGVDYVD-TSYY-EEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred EEEE---eCCchhhHHHHHHHHHhCCCEEE-cccC-Cchh-hhhhHHHHHcCeEEE
Confidence 6555 55666777999999999998544 3432 2333 888899999998765
No 285
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.75 E-value=1.2e+02 Score=30.09 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=58.3
Q ss_pred ecCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhc
Q psy16953 73 VNTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152 (806)
Q Consensus 73 l~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g 152 (806)
+..|++|+-.-+ +-.++.|+.+.+=-..-.+- +.+++++++| ...+ .|.|-.+|+-..+-.+.|++.|
T Consensus 48 ~~~tp~e~v~aA---~~~dv~vIgvSsl~g~h~~l---~~~lve~lre-----~G~~-~i~v~~GGvip~~d~~~l~~~G 115 (143)
T COG2185 48 LFQTPEEAVRAA---VEEDVDVIGVSSLDGGHLTL---VPGLVEALRE-----AGVE-DILVVVGGVIPPGDYQELKEMG 115 (143)
T ss_pred CcCCHHHHHHHH---HhcCCCEEEEEeccchHHHH---HHHHHHHHHH-----hCCc-ceEEeecCccCchhHHHHHHhC
Confidence 345565554444 44455555554322222222 3589999999 4322 3336678888888899999985
Q ss_pred ccCCccEEEeCCcchHHHHHHHHhcC
Q psy16953 153 KTLGIPLFVFGPETHMTAIVGMALGK 178 (806)
Q Consensus 153 ~~~g~~i~~~~~~~~m~~~~~~a~~~ 178 (806)
+ -.+|++.|++.+++...+..
T Consensus 116 ----~-~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 116 ----V-DRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred ----c-ceeeCCCCCHHHHHHHHHHH
Confidence 4 57999999999999877653
No 286
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=48.38 E-value=45 Score=33.93 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 405 DHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 405 D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
+.|+...+|+ .+.|++++. .||.-+ ..+.+.+++ ..|||+++..|....
T Consensus 20 ~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~--~~~pvva~V~g~AaS 71 (178)
T cd07021 20 RALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILN--SPIPTIAYVNDRAAS 71 (178)
T ss_pred HHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHh--CCCCEEEEECCchHH
Confidence 3444555666 899999999 666655 667777776 569999999877664
No 287
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=48.34 E-value=26 Score=45.34 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=44.0
Q ss_pred HHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 12 KDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 12 K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+++|.+++. |.+ +... .++.+|+.+...-++ .|+||||..-.|+| | +.+..|.+|+++++++.
T Consensus 675 ~~ll~~~GI--p~P-~~~~-----~~s~ee~~~~~~~ig-yPvVVKP~~~~Gg~---g-v~iv~~~eeL~~~l~~~ 737 (1068)
T PRK12815 675 YQLLDELGL--PHV-PGLT-----ATDEEEAFAFAKRIG-YPVLIRPSYVIGGQ---G-MAVVYDEPALEAYLAEN 737 (1068)
T ss_pred HHHHHHcCc--CCC-CeEE-----eCCHHHHHHHHHhcC-CCEEEEeCCCCCCC---C-EEEECCHHHHHHHHHHh
Confidence 345555555 554 4444 678888877666676 79999997765544 3 55566889999999886
No 288
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=48.30 E-value=35 Score=34.01 Aligned_cols=53 Identities=26% Similarity=0.184 Sum_probs=40.3
Q ss_pred CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 402 TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 402 ~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.+.+-|.++.+++.++.|.+|+. .||.-+ ....++++. .++||+++..|.+..
T Consensus 16 ~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~--~~~~v~~~~~g~aaS 71 (162)
T cd07013 16 QFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKF--IKADVVTIIDGLAAS 71 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHh--cCCCceEEEEeehhh
Confidence 45677789999999999999999 555444 566777776 457899988777664
No 289
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=48.26 E-value=39 Score=37.00 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCccc
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDIV 517 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i~ 517 (806)
..||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++-.-- +..++...++ ..+
T Consensus 112 ~pkPvIAav~G~a~G-gG~~LalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A--~~l------- 177 (296)
T PRK08260 112 SLKPVIAAVNGPAVG-VGATMTLAMDIRLASTAAR----FGFVFGRRGIVPEAASSWFLPRLVGLQTA--LEW------- 177 (296)
T ss_pred CCCCEEEEECCeeeh-HhHHHHHhCCEEEeeCCCE----EecchhhcCcCCCcchhhhHHHhhCHHHH--HHH-------
Confidence 689999999998875 2545454443344444332 333344566643211 1122111111 111
Q ss_pred cCCCCCCCCCcccchHHhhcccc
Q psy16953 518 PQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...|++..+|++.|++
T Consensus 178 -----lltg~~~~a~eA~~~GLv 195 (296)
T PRK08260 178 -----VYSGRVFDAQEALDGGLV 195 (296)
T ss_pred -----HHcCCccCHHHHHHCCCc
Confidence 235567888889999986
No 290
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=48.16 E-value=37 Score=36.37 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++..-- ..-|...+ ......+
T Consensus 92 ~~~kPvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l-------- 158 (259)
T PRK06494 92 DLDKPIIAAVNGVAMG-GGFELALACDLIVAAENAT----FALPEPRVGLAALAGGLHRLPRQIGLKRAMGM-------- 158 (259)
T ss_pred cCCCCEEEEECCEEec-HHHHHHHhCCEEEEeCCCE----EeCcccccCCCCCchHHHHHHHHcCHHHHHHH--------
Confidence 5789999999998875 2444444444344444332 322334456543221 11111110 0011111
Q ss_pred CCCCCCCCCcccchHHhhccccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=-...+++..+|++.|++.
T Consensus 159 ----ll~g~~~~a~eA~~~GLv~ 177 (259)
T PRK06494 159 ----ILTGRRVTAREGLELGFVN 177 (259)
T ss_pred ----HHcCCcCCHHHHHHcCCCc
Confidence 1345678888899999863
No 291
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=48.10 E-value=40 Score=32.72 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCH-------HHHHHHHHHHHHcC-CeEEccCcc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPE-------NMTRKLNLLAKEKG-VSIIGPATV 332 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E-------~~~~~l~~~a~~~g-iriiGPN~~ 332 (806)
.++++++.+.+.|++.++++.-||.- +...++++.++++| ..+.=..|+
T Consensus 78 ~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~l 134 (135)
T cd00419 78 STDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCL 134 (135)
T ss_pred CHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 47888999988999999999999953 34567778888887 556555553
No 292
>PLN02600 enoyl-CoA hydratase
Probab=47.96 E-value=49 Score=35.25 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=42.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+.. .|-.-+..+-=.++.++.. +..-.-+.|++-.-- ..-|...+ ......+
T Consensus 86 ~~~kPvIAav~G~a~G-gG~~lala~D~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l-------- 152 (251)
T PLN02600 86 ALSIPTIAVVEGAALG-GGLELALSCDLRICGEEAV----FGLPETGLAIIPGAGGTQRLPRLVGRSRAKEL-------- 152 (251)
T ss_pred hCCCCEEEEecCeecc-hhHHHHHhCCEEEeeCCCE----EeCcccccCcCCCchHHHHHHHHhCHHHHHHH--------
Confidence 3789999999999875 2444444443333443332 222233456532111 11111111 0011111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 153 ----~ltg~~~~a~eA~~~Glv 170 (251)
T PLN02600 153 ----IFTGRRIGAREAASMGLV 170 (251)
T ss_pred ----HHhCCccCHHHHHHcCCC
Confidence 235567888899999986
No 293
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=47.79 E-value=41 Score=37.66 Aligned_cols=74 Identities=11% Similarity=-0.087 Sum_probs=42.8
Q ss_pred chhchHHHHHhhCCCCcccccccccc-cccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAA-VKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
.-+..|++|++++. |++ +..... .....+.+++.....-++ -|+||||-..-+- . +|.+..+.+|++++++
T Consensus 130 DK~~~k~~l~~~GI--~~p-~~~~~~~~~~~~~~~~~~~~~~~l~-~PvvVKP~~ggsS---~-GV~~v~~~~el~~a~~ 201 (347)
T PRK14572 130 DKTRANQIFLQSGQ--KVA-PFFELEKLKYLNSPRKTLLKLESLG-FPQFLKPVEGGSS---V-STYKITNAEQLMTLLA 201 (347)
T ss_pred CHHHHHHHHHHcCC--CCC-CEEEEEccccccChHHHHHHHHhcC-CCEEEecCCCCCC---C-CEEEECCHHHHHHHHH
Confidence 34567899999988 665 332210 111123334332222243 6999999663222 2 3556668999999888
Q ss_pred HHc
Q psy16953 86 ERM 88 (806)
Q Consensus 86 ~~~ 88 (806)
+..
T Consensus 202 ~~~ 204 (347)
T PRK14572 202 LIF 204 (347)
T ss_pred HHH
Confidence 764
No 294
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=47.43 E-value=50 Score=35.62 Aligned_cols=83 Identities=23% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+...-=.++.++.. +.--.-+.|++..-.. .-|...+ ......+
T Consensus 104 ~~~kPvIaav~G~a~G-gG~~LalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 170 (269)
T PRK06127 104 DYAKPTIACIRGYCIG-GGMGIALACDIRIAAEDSR----FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDL-------- 170 (269)
T ss_pred hCCCCEEEEECCEEec-HHHHHHHhCCEEEeeCCCE----eeCchhhhCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2444444444444444433 4445556676543221 1122221 1111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=...-+++..+|++.|++
T Consensus 171 ----~ltg~~~~a~eA~~~Glv 188 (269)
T PRK06127 171 ----FYTARRFDAAEALRIGLV 188 (269)
T ss_pred ----HHcCCCCCHHHHHHcCCC
Confidence 135557888888989975
No 295
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=47.30 E-value=59 Score=34.78 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHH-HHHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDI-IGSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~-~~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++..--.- -|... -......+
T Consensus 100 ~~~kpvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l-------- 166 (262)
T PRK07509 100 RLPVPVIAALEGVCFG-GGLQIALGADIRIAAPDTK----LSIMEAKWGLVPDMAGTVSLRGLVRKDVAREL-------- 166 (262)
T ss_pred hCCCCEEEEECCeeec-chHHHHHhCCEEEecCCCE----eecchhccCCCCCchHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2555555554455555543 44445566664322111 11111 01111222
Q ss_pred CCCCCCCCCcccchHHhhccccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
=....|++...|++.|++.
T Consensus 167 ----~ltg~~~~a~eA~~~Glv~ 185 (262)
T PRK07509 167 ----TYTARVFSAEEALELGLVT 185 (262)
T ss_pred ----HHcCCCcCHHHHHHcCChh
Confidence 2356678888999999863
No 296
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=47.01 E-value=35 Score=36.32 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=42.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCcc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i 516 (806)
...||||+..-|.+-. .|-.-+...-=.++.++.. +.--.-+.|+...-. +..++...++ ..+
T Consensus 93 ~~~kPvIaav~G~a~G-gG~~lal~cD~ria~~~a~----f~~pe~~~G~~p~~g~~~~l~~~~G~~~a--~~l------ 159 (249)
T PRK05870 93 SCPLPTIAAVNGAAVG-AGLNLALAADVRIAGPKAL----FDARFQKLGLHPGGGATWMLQRAVGPQVA--RAA------ 159 (249)
T ss_pred hCCCCEEEEECCEeEc-hhHHHHHhCCEEEEcCCCE----EeCcccccCcCCCCcceeeHHhhhCHHHH--HHH------
Confidence 3789999999888775 2444444443334444332 222233456543221 2222211111 111
Q ss_pred ccCCCCCCCCCcccchHHhhcccc
Q psy16953 517 VPQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 517 ~~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 160 ------~ltg~~~~a~eA~~~Glv 177 (249)
T PRK05870 160 ------LLFGMRFDAEAAVRHGLA 177 (249)
T ss_pred ------HHhCCccCHHHHHHcCCH
Confidence 124557888888999976
No 297
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=46.96 E-value=48 Score=31.95 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+.-+|.+||.+. ...+.|.+.|| . ...||--++...++. ...++--.+.++.| +-...|+.+|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-------~-v~~v~srs~~sa~~a---~~~~~~~~~~~~~~-~~~~aDlv~i-- 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-------E-VVGVYSRSPASAERA---AAFIGAGAILDLEE-ILRDADLVFI-- 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-------E-EEEESSCHH-HHHHH---HC--TT-----TTG-GGCC-SEEEE--
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-------e-EEEEEeCCccccccc---cccccccccccccc-ccccCCEEEE--
Confidence 556899999863 23567777777 1 223444443211111 12233223445667 4556777766
Q ss_pred ecCChhhHHHHHHHhcCC---CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE
Q psy16953 278 FASLRSAYDSTIETLGFP---QIRSIAIIAEGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~---gvk~~viis~Gf~E~~~~~l~~~a~~~giri 326 (806)
++|.+++..+.+++... .-..+|+-+||= +-.++++-+++.|..+
T Consensus 75 -avpDdaI~~va~~La~~~~~~~g~iVvHtSGa---~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 75 -AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA---LGSDVLAPARERGAIV 122 (127)
T ss_dssp --S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-----GGGGHHHHHTT-EE
T ss_pred -EechHHHHHHHHHHHHhccCCCCcEEEECCCC---ChHHhhhhHHHCCCeE
Confidence 77888999999999754 235688889884 3444555556666543
No 298
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=46.65 E-value=1.5e+02 Score=32.87 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=58.0
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEE-EEEEc--cCCcch-HHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMI-VLLGE--VGGVEE-YEV 433 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I-~ly~E--igg~~d-~~f 433 (806)
..+|.--++..+|.++..+...+...|+-+-. +.+..+ ..++..++.+.+.++++++++ +.+.| .|-+-+ +++
T Consensus 75 ~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~-v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I 151 (363)
T TIGR02326 75 VPKDGKLLVVINGAYGARIVQIAEYLGIPHHV-VDTGEV--EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAV 151 (363)
T ss_pred CCCCCeEEEEeCChhhHHHHHHHHHcCCceEE-EeCCCC--CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHH
Confidence 34565556666788777666667777776543 566655 467888888888888888854 55778 555566 778
Q ss_pred HHHHHhcCCCCCEEE
Q psy16953 434 CAALKDKRITKPLVA 448 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~ 448 (806)
.+.+++ .+.++|+
T Consensus 152 ~~l~~~--~g~~liv 164 (363)
T TIGR02326 152 AKLAHR--HGKVTIV 164 (363)
T ss_pred HHHHHH--cCCEEEE
Confidence 888776 4555554
No 299
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=46.39 E-value=51 Score=33.45 Aligned_cols=37 Identities=11% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEe
Q psy16953 413 DPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCI 451 (806)
Q Consensus 413 Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~ 451 (806)
+...+.|++|+. +||.-+ ..+.+.++. .++||+++..
T Consensus 27 ~~~~~~i~l~inSPGG~v~~~~~I~~~i~~--~~~pvv~~v~ 66 (172)
T cd07015 27 QDNAEAIIIELDTPGGRADAAGNIVQRIQQ--SKIPVIIYVY 66 (172)
T ss_pred cCCCCeEEEEEECCCCCHHHHHHHHHHHHh--cCcCEEEEEe
Confidence 456899999999 666665 667777765 5799999987
No 300
>PRK14852 hypothetical protein; Provisional
Probab=45.94 E-value=70 Score=40.87 Aligned_cols=120 Identities=12% Similarity=0.011 Sum_probs=68.5
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
.+++|+|+|+++ ..+.+|...| .|+|.-+..+.-+. +.+....+|.+--..+++.+. -.|
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraG----------VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP 400 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTG----------IGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNP 400 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcC----------CCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCC
Confidence 788999999984 3588888888 57888776653111 111222333221111221111 245
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
++.|.++ +....++.+++.- .++..+|--...|.....+.+.+.|+++|+.++--.+.|+
T Consensus 401 ~v~I~~~---~~~I~~en~~~fl-~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 401 FLDIRSF---PEGVAAETIDAFL-KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred CCeEEEE---ecCCCHHHHHHHh-hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 5655522 2222233344443 4566555444556555667788889999999998777664
No 301
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=45.92 E-value=1.7e+02 Score=28.49 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHH-HHcCCeEEccCccccccCCccccccCCCCcccccccCCCCCCCEE
Q psy16953 286 DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLA-KEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVA 364 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a-~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~Va 364 (806)
+.+.+.+.+.||+.+.-+.++..-...+.+.+.+ .+.+++++.+.-= .-+ ..+-+.. . ...+++.
T Consensus 3 e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E--------~~A--~~~A~g~--~--r~~~~v~ 68 (160)
T cd07034 3 EAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESE--------HAA--AEAAIGA--S--AAGARAM 68 (160)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCH--------HHH--HHHHHHH--H--hhCCcEE
Confidence 4566777778898888777654333444442210 1357888766420 000 0000001 0 1123488
Q ss_pred EEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCC-----CHHHHHHHhhcCCCccEEEEEEccCCcch-HH-HHHHH
Q psy16953 365 YVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGT-----TFMDHILRYQADPEVKMIVLLGEVGGVEE-YE-VCAAL 437 (806)
Q Consensus 365 lvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~-----~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~-f~~a~ 437 (806)
++++..++.+.+.........+.--++=+|.....+. .+.|+-......| ||.... .+ ...+ ++ +.++.
T Consensus 69 ~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~A~ 144 (160)
T cd07034 69 TATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLA-PS--SVQEAFDLALEAF 144 (160)
T ss_pred EeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEe-CC--CHHHHHHHHHHHH
Confidence 9999999999887776666656666666666532322 2444433344455 665432 33 3445 33 34444
Q ss_pred HhcC-CCCCEEEEE
Q psy16953 438 KDKR-ITKPLVAWC 450 (806)
Q Consensus 438 r~~~-~~KPVV~lk 450 (806)
+.+. .++||+++-
T Consensus 145 ~~a~~~~~Pv~l~~ 158 (160)
T cd07034 145 ELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHhCCCEEEEc
Confidence 4442 237998764
No 302
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=45.86 E-value=58 Score=34.72 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=45.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|+....-.- -|...+ ......+
T Consensus 96 ~~~kPvIaav~G~a~G-gG~~lala~D~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l-------- 162 (255)
T PRK07260 96 QLPKPVIMCVDGAVAG-AAANMAVAADFCIASTKTK----FIQAFVGVGLAPDAGGLFLLTRAIGLNRATHL-------- 162 (255)
T ss_pred cCCCCEEEEecCeeeh-hhHHHHHhCCEEEEeCCCE----EechHhhcCCCCCCchhhhhHHhhCHHHHHHH--------
Confidence 3789999999999875 2555566555555554433 33344555654321111 111110 0111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 163 ----~l~g~~~sa~eA~~~Glv 180 (255)
T PRK07260 163 ----AMTGEALTAEKALEYGFV 180 (255)
T ss_pred ----HHhCCccCHHHHHHcCCc
Confidence 245668888889999986
No 303
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=45.81 E-value=53 Score=35.24 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=45.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+.=.++.++.. +.--.-+.|++-.-.... |...+ ......+
T Consensus 101 ~~~kpvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l-------- 167 (266)
T PRK09245 101 NLEVPVIAAVNGPAIG-AGCDLACMCDIRIASETAR----FAESFVKLGLIPGDGGAWLLPRIIGMARAAEM-------- 167 (266)
T ss_pred cCCCCEEEEECCEeec-HHHHHHHhCCEEEecCCCE----EcccccccCcCCCcchhhhHHHHhhHHHHHHH--------
Confidence 3789999999998875 2555555554445554433 333344566653211111 11111 1111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...+++..+|.+.|++
T Consensus 168 ----~l~g~~~~a~eA~~~Glv 185 (266)
T PRK09245 168 ----AFTGDAIDAATALEWGLV 185 (266)
T ss_pred ----HHcCCCcCHHHHHHcCCc
Confidence 235567888889999975
No 304
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.54 E-value=74 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=32.3
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHH
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l 315 (806)
.+|+.|+++-.........+-+.|.+.+++.+.+=+.|.. +..+.|
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l 93 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS-SLERAL 93 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH-HHHHHH
Confidence 3599888777777888899999999999986555434433 334433
No 305
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=45.51 E-value=46 Score=35.64 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=20.1
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSD 474 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~ 474 (806)
...||||+..-|.+-. .|-+-+...-=.++.++
T Consensus 97 ~~~kPvIaav~G~a~G-gG~~lalacD~ria~~~ 129 (262)
T PRK05995 97 RCPKPVIARVHGDAYA-GGMGLVAACDIAVAADH 129 (262)
T ss_pred cCCCCEEEEECCEEEh-hHHHHHHhCCEEEeeCC
Confidence 3789999999888774 24444444433334333
No 306
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=45.48 E-value=80 Score=32.59 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCC-CH--HHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGI-PE--NMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf-~E--~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
..+++.+++ +|+..+++.+... +. ..+..++++|++.|+..+=|.++|...
T Consensus 54 ~~~~l~~al--~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 54 DPESLVAAL--KGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp -HHHHHHHH--TTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred CHHHHHHHH--cCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 334444444 5888888877765 22 577889999999998655587776554
No 307
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=45.28 E-value=67 Score=36.48 Aligned_cols=118 Identities=12% Similarity=0.029 Sum_probs=61.0
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcc------cccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL------KFYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~------~~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
.+++|+|+|.++. .+.+|...| .|.|+-+.++.-+ -+++-.+.+|.+--..+.+.+. -.|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G----------vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG----------VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC----------CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 6778999999864 478998988 6789988876200 0111112333211111112121 134
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
++.+.. . ........+++.- .+... ||.+..-.+ ....+.++|+++++.++--.+.|.
T Consensus 204 ~v~v~~--~-~~~~~~~~~~~~~-~~~D~-Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g~ 261 (376)
T PRK08762 204 DVQVEA--V-QERVTSDNVEALL-QDVDV-VVDGADNFP-TRYLLNDACVKLGKPLVYGAVFRF 261 (376)
T ss_pred CCEEEE--E-eccCChHHHHHHH-hCCCE-EEECCCCHH-HHHHHHHHHHHcCCCEEEEEeccC
Confidence 444431 1 1111112223322 34554 444443322 334577899999999887766663
No 308
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=45.11 E-value=2.2e+02 Score=28.86 Aligned_cols=145 Identities=9% Similarity=-0.007 Sum_probs=71.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCcccccc--C--CCCcccccccCCCCCC
Q psy16953 286 DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGN--T--GGMMDNILHSKLYRPG 361 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~--~--~g~~~~~~~~~~~~~G 361 (806)
...++.+...++..+++.. ..+.... .+.+.+.|+.++..++.-- .+....++. . ..+....+. .-..+
T Consensus 45 ~~~~~~~~~~~~d~iii~~-~~~~~~~---~~~~~~~~ipvv~~~~~~~-~~~~~~v~~d~~~~g~~~~~~l~--~~g~~ 117 (264)
T cd06267 45 REALELLLSRRVDGIILAP-SRLDDEL---LEELAALGIPVVLVDRPLD-GLGVDSVGIDNRAGAYLAVEHLI--ELGHR 117 (264)
T ss_pred HHHHHHHHHcCcCEEEEec-CCcchHH---HHHHHHcCCCEEEeccccc-CCCCCEEeeccHHHHHHHHHHHH--HCCCc
Confidence 4556666667777666543 2222222 4456677888877765411 011011110 0 000000110 11356
Q ss_pred CEEEEeCChh--HH----HHHHHHHHhcCCce--eEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 362 SVAYVSRSGG--MS----NELNNIISKATNGV--YEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 362 ~ValvSQSG~--l~----~~l~~~~~~~g~G~--s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
+|++++.+.. .. ..+.+.+.+.+.-+ ...+....+ .+.....+.+++...|+.++|+..-. .. ..
T Consensus 118 ~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~i~~~~~----~~a~~ 191 (264)
T cd06267 118 RIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFS--EESGYEAARELLASGERPTAIFAAND----LMAIG 191 (264)
T ss_pred eEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccc--hhhHHHHHHHHHhcCCCCcEEEEcCc----HHHHH
Confidence 8999876644 21 22334455555322 223333323 33445555678888888888776533 22 56
Q ss_pred HHHHHHhcCCC
Q psy16953 433 VCAALKDKRIT 443 (806)
Q Consensus 433 f~~a~r~~~~~ 443 (806)
+++++++....
T Consensus 192 ~~~al~~~g~~ 202 (264)
T cd06267 192 ALRALRELGLR 202 (264)
T ss_pred HHHHHHHhCCC
Confidence 77777776544
No 309
>KOG1680|consensus
Probab=45.01 E-value=32 Score=37.42 Aligned_cols=126 Identities=16% Similarity=0.076 Sum_probs=64.9
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----------------HHHHHHhcC-CCCCEEEEEeCcCcCcCcccc
Q psy16953 401 TTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----------------VCAALKDKR-ITKPLVAWCIGTCASMFTSEV 462 (806)
Q Consensus 401 ~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----------------f~~a~r~~~-~~KPVV~lk~Grs~~~~g~~a 462 (806)
+.+.|-+.-|.+|+..++|++|+.-+++-. .+ |++.....+ .+||||+..-|-.-.. |-+-
T Consensus 67 ~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~AlgG-G~EL 145 (290)
T KOG1680|consen 67 LELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALGG-GLEL 145 (290)
T ss_pred HHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeecc-chhh
Confidence 345566667888999999999998333321 11 333333333 7899999655443321 2222
Q ss_pred cccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccccCCCCCCCCCcccchHHhhccccc
Q psy16953 463 QFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 463 a~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~~~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
++.--=-.+++... +-..-++-|++...--.+-+..+--....| |.=...-|++.+.|.+.|++.
T Consensus 146 almCDirva~~~Ak----fg~~~~~~Gi~p~~GGT~rl~r~vG~s~Al----------e~~ltg~~~~AqeA~~~GlVn 210 (290)
T KOG1680|consen 146 ALMCDIRVAGEGAK----FGFFEIRMGIIPSWGGTQRLPRIVGKSRAL----------EMILTGRRLGAQEAKKIGLVN 210 (290)
T ss_pred hhhcceEeccCCCe----ecccccccCCccCCCchhhHHHHhChHHHH----------HHHHhcCcccHHHHHhCCcee
Confidence 22211112233332 333445566665444333222211111111 112466788899999999863
No 310
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=44.99 E-value=64 Score=34.62 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=43.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHH-HcCCcccCChhh-HHHHH-HHHHHhhhhCCccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLA-QAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIV 517 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~-qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~ 517 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.- ..|++..-..-. |...+ ......+
T Consensus 100 ~~~kPvIaav~G~a~G-gG~~lala~D~~ia~~~a~----f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l------- 167 (262)
T PRK06144 100 QLRVPTIAAIAGACVG-GGAAIAAACDLRIATPSAR----FGFPIARTLGNCLSMSNLARLVALLGAARVKDM------- 167 (262)
T ss_pred hCCCCEEEEECCeeee-hHHHHHHhCCEEEecCCCE----eechhHHhccCCCCccHHHHHHHHhCHHHHHHH-------
Confidence 3789999999998875 2555555554444444432 222222 256543221111 11111 0111122
Q ss_pred cCCCCCCCCCcccchHHhhcccc
Q psy16953 518 PQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 168 -----~l~g~~~~a~eA~~~Glv 185 (262)
T PRK06144 168 -----LFTARLLEAEEALAAGLV 185 (262)
T ss_pred -----HHcCCCcCHHHHHHcCCc
Confidence 235667888889999986
No 311
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=44.96 E-value=45 Score=35.72 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-+-+.|++...-.. -|...+ ......+
T Consensus 97 ~~~kPvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l-------- 163 (262)
T PRK08140 97 ALPLPVIAAVNGVAAG-AGANLALACDIVLAARSAS----FIQAFVKIGLVPDSGGTWFLPRLVGMARALGL-------- 163 (262)
T ss_pred hCCCCEEEEECCeeeh-hHHHHHHhCCEEEecCCCE----EeccccccCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 4789999999999875 2545555444444444432 22233455654321111 111111 0111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...+++..+|.+.|++
T Consensus 164 ----~l~g~~~~a~eA~~~Glv 181 (262)
T PRK08140 164 ----ALLGEKLSAEQAEQWGLI 181 (262)
T ss_pred ----HHcCCCcCHHHHHHcCCc
Confidence 245667888889999975
No 312
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=44.87 E-value=37 Score=36.59 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=19.8
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSD 474 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~ 474 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++
T Consensus 99 ~~~kPvIaaV~G~a~G-gG~~lal~~D~~ia~~~ 131 (265)
T PRK05674 99 RLKIPTLAVVQGAAFG-GALGLISCCDMAIGADD 131 (265)
T ss_pred cCCCCEEEEEcCEEEe-chhhHhhhcCEEEEeCC
Confidence 3789999999888774 24444443333334333
No 313
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=44.74 E-value=53 Score=35.19 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++..-- ..-|...+- .....+
T Consensus 96 ~~~kPvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 162 (261)
T PRK08138 96 QCPKPVIAAVNGYALG-GGCELAMHADIIVAGESAS----FGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM-------- 162 (261)
T ss_pred hCCCCEEEEEccEEEc-HHHHHHHhCCEEEecCCCE----eeCcccccccCCCCcHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2444444443334443332 322334456542211 111111110 001111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 163 ----~l~g~~~~a~eA~~~Glv 180 (261)
T PRK08138 163 ----ALTGCMVPAPEALAIGLV 180 (261)
T ss_pred ----HHcCCCCCHHHHHHCCCC
Confidence 134557888889999986
No 314
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=44.44 E-value=65 Score=36.24 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=51.2
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCC--CcccccccceeecccccccHHHHhc-cCCCee
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGD--HKLKFYWGHKEVLIPVYKKMEDAMS-KNKDAD 273 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~--~~~~~~~g~~~i~~p~y~sv~daip-~~~Dla 273 (806)
+.-+|+|+|+++-. ++-|.+..| | ..+|..+..+ .++.+.|+.. .+++. ++++ .. ..+|++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h------P--~~~l~~laS~~saG~~~~~~~~--~~~v~-~~~~-~~~~~~Dvv 70 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF------P--VGELYALASEESAGETLRFGGK--SVTVQ-DAAE-FDWSQAQLA 70 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC------C--ceEEEEEEccCcCCceEEECCc--ceEEE-eCch-hhccCCCEE
Confidence 45689999998765 334434223 2 3466665543 2333333222 23333 4444 32 456765
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
++ +.|.........++.++|++ +|=.|+-|
T Consensus 71 f~---a~p~~~s~~~~~~~~~~g~~-VIDlS~~f 100 (336)
T PRK08040 71 FF---VAGREASAAYAEEATNAGCL-VIDSSGLF 100 (336)
T ss_pred EE---CCCHHHHHHHHHHHHHCCCE-EEECChHh
Confidence 55 77888777888887667875 55556555
No 315
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=44.28 E-value=3.8e+02 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhh--hcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEE
Q psy16953 113 GIVTALTEFQSK--LIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLF 160 (806)
Q Consensus 113 gii~al~~~~~~--~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~ 160 (806)
|+..|+++..+. +...++.++++-...+..+.++..++..+..++...
T Consensus 22 ~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~i 71 (299)
T cd04509 22 GAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDAL 71 (299)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEE
Confidence 455555553221 123556666666666667777777776555456543
No 316
>PRK08507 prephenate dehydrogenase; Validated
Probab=44.22 E-value=1.2e+02 Score=32.55 Aligned_cols=75 Identities=16% Similarity=0.050 Sum_probs=43.1
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc-cccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI-PVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~-p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+. ....+|.+.|+ .-.|+-++++...... ..+.+. ..+.+..+ +.+ .|+.++ +
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~---------~~~v~~~d~~~~~~~~--~~~~g~~~~~~~~~~-~~~-aD~Vil---a 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGL---------ISKVYGYDHNELHLKK--ALELGLVDEIVSFEE-LKK-CDVIFL---A 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCC---------CCEEEEEcCCHHHHHH--HHHCCCCcccCCHHH-Hhc-CCEEEE---e
Confidence 688999763 34677877775 3356656654210000 011232 24457777 444 676665 6
Q ss_pred CChhhHHHHHHHhcC
Q psy16953 280 SLRSAYDSTIETLGF 294 (806)
Q Consensus 280 ~~~~~~~~~le~~~~ 294 (806)
+|...+..+++++..
T Consensus 66 vp~~~~~~~~~~l~~ 80 (275)
T PRK08507 66 IPVDAIIEILPKLLD 80 (275)
T ss_pred CcHHHHHHHHHHHhc
Confidence 677778888888763
No 317
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=44.20 E-value=2.7e+02 Score=29.84 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--cc----cCCccccccCCCCc----cccc
Q psy16953 285 YDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GL----KPGCFKIGNTGGMM----DNIL 353 (806)
Q Consensus 285 ~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii----~p~~~~ig~~~g~~----~~~~ 353 (806)
.....+.+... +|..++. ...+. ....+.+.+++.++.++.|++.. +. +|..++++...... ..+.
T Consensus 53 ~~~~~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l 129 (333)
T cd06332 53 AVQAARKLIEQDKVDVVVG--PVFSN-VALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYA 129 (333)
T ss_pred HHHHHHHHHHHcCCcEEEc--CCccH-HHHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHH
Confidence 33455565544 7875442 21222 23356677888999999987643 11 22223322110000 0000
Q ss_pred ccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCC--CCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 354 HSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGD--RYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 354 ~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~--~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
. ....-+|+++......+.+......+. +. ...+ +.. .....++.+.+..+.+ ....+|++..- -.+
T Consensus 130 ~--~~g~~~v~il~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~~~~d~~~~i~~l~~-~~~d~i~~~~~---~~~~ 199 (333)
T cd06332 130 A--DKGYKKVVIIAPDYAAGKDAVAGFKRT-FK-GEVV--EEVYTPLGQLDFSAELAQIRA-AKPDAVFVFLP---GGMA 199 (333)
T ss_pred H--HhCCceEEEEecCcchhHHHHHHHHHh-hc-EEEe--eEEecCCCCcchHHHHHHHHh-cCCCEEEEecc---cchH
Confidence 0 011236888887666666655444332 21 1111 111 1123467777777653 33456665433 234
Q ss_pred HHHHHHHHhcCC--CCCEE
Q psy16953 431 YEVCAALKDKRI--TKPLV 447 (806)
Q Consensus 431 ~~f~~a~r~~~~--~KPVV 447 (806)
..|++.+++... +.|++
T Consensus 200 ~~~~~~~~~~g~~~~~~~~ 218 (333)
T cd06332 200 VNFVKQYDQAGLKKKIPLY 218 (333)
T ss_pred HHHHHHHHHcCcccCCcee
Confidence 788888887655 44655
No 318
>PRK08223 hypothetical protein; Validated
Probab=43.92 E-value=84 Score=34.62 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=65.0
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcc------cccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL------KFYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~------~~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
++++|+|+|+++ ..+.+|...| .|+|.-+-.+.-+ -+++..+.+|.+--.+.++.+. -.|
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aG----------VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP 95 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLG----------IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP 95 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhC----------CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC
Confidence 788999999885 3588999999 6788877765211 0222334455222222222122 135
Q ss_pred CeeEEEeec-CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 271 DADVLVNFA-SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 271 Dlavivi~~-~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
++.|..+.. .-.+..++.++ +...+|=-++.|.-+....+.+.|+++|+.++-..+.|+
T Consensus 96 ~v~V~~~~~~l~~~n~~~ll~-----~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 96 ELEIRAFPEGIGKENADAFLD-----GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred CCEEEEEecccCccCHHHHHh-----CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 555442111 01223344444 344343222333324456678899999999998877773
No 319
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=43.72 E-value=46 Score=35.48 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHHHH-HHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDIIGS-VYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~~a-ll~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-+-+...-=.++.++.. +.--.-+.|++..-.. .-|...+-. ....+
T Consensus 92 ~~~kpvIAav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 158 (257)
T PRK07658 92 KFSKPVIAAIHGAALG-GGLELAMSCHIRFATESAK----LGLPELNLGLIPGFAGTQRLPRYVGKAKALEM-------- 158 (257)
T ss_pred hCCCCEEEEEcCeeee-HHHHHHHhCCEEEecCCCc----ccCcccccCCCCCCcHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998874 2444443333333333322 3333345565422110 111111100 01111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 159 ----~l~g~~~~a~eA~~~Glv 176 (257)
T PRK07658 159 ----MLTSEPITGAEALKWGLV 176 (257)
T ss_pred ----HHcCCCcCHHHHHHcCCc
Confidence 124557888888999986
No 320
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.62 E-value=78 Score=29.83 Aligned_cols=84 Identities=27% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC----ChhhHHHHHHHhc
Q psy16953 218 MLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS----LRSAYDSTIETLG 293 (806)
Q Consensus 218 ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~----~~~~~~~~le~~~ 293 (806)
|...|| ++.-..+. +|.-..++.+....+|+.++ +. ....+.++++++.
T Consensus 23 l~~~G~-----------~vi~lG~~-------------vp~e~~~~~a~~~~~d~V~i---S~~~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 23 LRDAGF-----------EVIYTGLR-------------QTPEEIVEAAIQEDVDVIGL---SSLSGGHMTLFPEVIELLR 75 (122)
T ss_pred HHHCCC-----------EEEECCCC-------------CCHHHHHHHHHHcCCCEEEE---cccchhhHHHHHHHHHHHH
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 294 FPQIRSIAIIAEGIPENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 294 ~~gvk~~viis~Gf~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
+.+.+.+.++.+|-.. .+..+..++.|+ .+++|+|
T Consensus 76 ~~~~~~i~i~~GG~~~---~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 ELGAGDILVVGGGIIP---PEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred hcCCCCCEEEEECCCC---HHHHHHHHHCCCCEEECCCC
No 321
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=43.49 E-value=66 Score=34.48 Aligned_cols=83 Identities=28% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|++..-... -|...+ ......+
T Consensus 98 ~~~kpvIaav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l-------- 164 (263)
T PRK07799 98 RLTKPLIAAVEGPAIA-GGTEILQGTDIRVAGESAK----FGISEAKWSLFPMGGSAVRLVRQIPYTVACDL-------- 164 (263)
T ss_pred cCCCCEEEEECCeEec-cHHHHHHhCCEEEecCCCE----ecCcccccCcCCCccHHHHHHHHhCHHHHHHH--------
Confidence 4789999999999875 2556666665555555543 44445566764322111 111110 0111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|.+.|++
T Consensus 165 ----~ltg~~~~a~eA~~~Glv 182 (263)
T PRK07799 165 ----LLTGRHITAAEAKEIGLI 182 (263)
T ss_pred ----HHcCCCCCHHHHHHcCCc
Confidence 235667888889999975
No 322
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=43.45 E-value=1.1e+02 Score=35.60 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc------ccccccceeecc-cc---cccHHHHhc
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK------LKFYWGHKEVLI-PV---YKKMEDAMS 267 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~------~~~~~g~~~i~~-p~---y~sv~daip 267 (806)
.+++|+|+|.++- .++||.-.| .|.++-+.++.- .-|++..+.+|. ++ -..+.+ +
T Consensus 19 ~~s~VlliG~gglGsEilKNLvL~G----------Ig~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~e-L- 86 (425)
T cd01493 19 ESAHVCLLNATATGTEILKNLVLPG----------IGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQE-L- 86 (425)
T ss_pred hhCeEEEEcCcHHHHHHHHHHHHcC----------CCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHH-H-
Confidence 5789999998864 489999999 678888876521 112222233341 11 112333 2
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
.||+.+-.+.-.+.. +..-..+.- .+.. +|| +...++....+|.++|+++++.++=.+|.|++-
T Consensus 87 -Np~V~i~~~~e~~~~-ll~~~~~f~-~~fd-iVI-~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 87 -NPDVNGSAVEESPEA-LLDNDPSFF-SQFT-VVI-ATNLPESTLLRLADVLWSANIPLLYVRSYGLYG 150 (425)
T ss_pred -CCCCEEEEEecccch-hhhhHHHHh-cCCC-EEE-ECCCCHHHHHHHHHHHHHcCCCEEEEecccCEE
Confidence 466655422222211 111111111 2333 343 455567666779999999999999888888764
No 323
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=43.44 E-value=57 Score=34.94 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=42.9
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC----hhhHHHHHHHHHHhhhhCCcc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS----FDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~----~~EL~~~~~all~~L~~~g~i 516 (806)
...||||+..-|.+... |-.-+..+-=.++.++.. +.--.-+.|++..-. +..++...+ ...+
T Consensus 96 ~~~~pvIaav~G~a~Gg-G~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~L~~~vg~~~--a~~l------ 162 (260)
T PRK07659 96 TMPKLTISAIHGPAAGL-GLSIALTADYVIADISAK----LAMNFIGIGLIPDGGGHFFLQKRVGENK--AKQI------ 162 (260)
T ss_pred hCCCCEEEEecCceecH-HHHHHHhCCEEEEcCCCE----EcCchhhcCCCCCCchhhhHHHhcCHHH--HHHH------
Confidence 37899999999988752 444444443344444432 333344566653221 111111111 1112
Q ss_pred ccCCCCCCCCCcccchHHhhcccc
Q psy16953 517 VPQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 517 ~~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-..-+|+..+|++.|++
T Consensus 163 ------~ltg~~~~a~eA~~~Glv 180 (260)
T PRK07659 163 ------IWEGKKLSATEALDLGLI 180 (260)
T ss_pred ------HHhCCccCHHHHHHcCCh
Confidence 124567888888888875
No 324
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=43.36 E-value=58 Score=34.93 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=46.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--+.+.|++-.--... |...+- .....+
T Consensus 101 ~~~kpvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l-------- 167 (266)
T PRK05981 101 NLPCPIVTAVNGPAAG-VGMSFALMGDLILCARSAY----FLQAFRRIGLVPDGGSTWLLPRLVGKARAMEL-------- 167 (266)
T ss_pred hCCCCEEEEECCEeeh-HHHHHHHhCCEEEecCCCE----EechHhhcCCCCCccHHHHHHHHhHHHHHHHH--------
Confidence 4799999999999875 2555555554445555433 333445667753221111 111110 111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...+++..+|++.|++
T Consensus 168 ----~l~g~~~~a~eA~~~Glv 185 (266)
T PRK05981 168 ----SLLGEKLPAETALQWGLV 185 (266)
T ss_pred ----HHhCCCcCHHHHHHcCCc
Confidence 246678888899999975
No 325
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=43.36 E-value=64 Score=34.35 Aligned_cols=83 Identities=6% Similarity=-0.044 Sum_probs=44.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhH-HHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTL-GDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL-~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|+...-..-.+ ...+ ......+
T Consensus 92 ~~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l-------- 158 (249)
T PRK07110 92 NCPIPVIAAMQGHAIG-GGLVLGLYADIVVLSRESV----YTANFMKYGFTPGMGATAILPEKLGLALGQEM-------- 158 (249)
T ss_pred cCCCCEEEEecCceec-hHHHHHHhCCEEEEeCCCE----ecCchhccCCCCCchHHHHHHHHhCHHHHHHH--------
Confidence 3789999999999875 2444444443334444432 3333455666533221111 1110 0111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...|++...|++.|++
T Consensus 159 ----lltg~~~~a~eA~~~Glv 176 (249)
T PRK07110 159 ----LLTARYYRGAELKKRGVP 176 (249)
T ss_pred ----HHcCCccCHHHHHHcCCC
Confidence 245678888889999986
No 326
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=43.21 E-value=1.8e+02 Score=31.70 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEE-EEEc--cCCcch-HHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIV-LLGE--VGGVEE-YEV 433 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~-ly~E--igg~~d-~~f 433 (806)
..+|.-.++...|..+..+...+...|.-+.. +..... ..++..++.+.+.++++++.++ ...| .|...+ +++
T Consensus 71 ~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~-i~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i 147 (355)
T TIGR03301 71 VPRDGKLLVLINGAYGERLAKICEYLGIPHTD-LNFSEY--EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAI 147 (355)
T ss_pred cCCCCeEEEECCCchhhHHHHHHHHcCCceEE-EecCCC--CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHH
Confidence 34566667777777765444555666665443 333333 4677888888887777777665 3454 244445 667
Q ss_pred HHHHHhcCCCCCEEE
Q psy16953 434 CAALKDKRITKPLVA 448 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~ 448 (806)
.+.+++ .+.++|+
T Consensus 148 ~~l~~~--~~~~liv 160 (355)
T TIGR03301 148 AKVARS--HGAVLIV 160 (355)
T ss_pred HHHHHH--cCCEEEE
Confidence 777765 3455544
No 327
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=43.15 E-value=35 Score=36.53 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=40.9
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCccccC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVPQ 519 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~~ 519 (806)
..||||+..-|.+-. .|-.-+...-=.++.++.. +.--+-+.|++.+.- ..-|...+- .....+
T Consensus 93 ~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~l--------- 158 (256)
T TIGR03210 93 VPKPVIARVQGYAIG-GGNVLVTICDLTIASEKAQ----FGQVGPKVGSVDPGYGTALLARVVGEKKAREI--------- 158 (256)
T ss_pred CCCCEEEEECCEEeh-hhHHHHHhCCEEEEeCCCE----EecccccccccCCccHHHHHHHHhCHHHHHHH---------
Confidence 789999999998875 2444444333333443332 333334456542221 111111110 001111
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 159 ---ll~g~~~~a~eA~~~Glv 176 (256)
T TIGR03210 159 ---WYLCRRYTAQEALAMGLV 176 (256)
T ss_pred ---HHhCCCcCHHHHHHcCCc
Confidence 124567888889999986
No 328
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=43.14 E-value=50 Score=35.37 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=42.0
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++...- ..-|...+- .....+
T Consensus 95 ~~~kPvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l-------- 161 (259)
T TIGR01929 95 TCPKPVIAMVNGYAIG-GGHVLHVVCDLTIAAENAR----FGQTGPKVGSFDGGYGSSYLARIVGQKKAREI-------- 161 (259)
T ss_pred hCCCCEEEEEcCEEeh-HHHHHHHhCCEEEecCCCE----ecCcccccccCCCccHHHHHHHHhHHHHHHHH--------
Confidence 3789999999888774 2444444443333433322 222334556543211 111222111 111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 162 ----~l~g~~~~a~eA~~~Glv 179 (259)
T TIGR01929 162 ----WFLCRQYDAEQALDMGLV 179 (259)
T ss_pred ----HHhCCccCHHHHHHcCCc
Confidence 235567888889999986
No 329
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=43.09 E-value=43 Score=35.67 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=42.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHH-HHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIG-SVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~-all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|++ -...-|...+- .....+
T Consensus 92 ~~~kPvIAav~G~a~G-gG~~Lal~cD~ria~~~a~----f~~pe~~~G~~--g~~~~l~~~vg~~~a~~l--------- 155 (249)
T PRK07938 92 ECAVPVIAAVHGFCLG-GGIGLVGNADVIVASDDAT----FGLPEVDRGAL--GAATHLQRLVPQHLMRAL--------- 155 (249)
T ss_pred hCCCCEEEEEcCEEee-hHHHHHHhCCEEEEeCCCE----eeCccceecCc--hhHHHHHHhcCHHHHHHH---------
Confidence 3789999999998875 2555555554444544432 33334455653 11111111100 011111
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 156 ---~ltg~~~~a~eA~~~Glv 173 (249)
T PRK07938 156 ---FFTAATITAAELHHFGSV 173 (249)
T ss_pred ---HHhCCcCCHHHHHHCCCc
Confidence 134567788888999976
No 330
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=42.80 E-value=28 Score=39.12 Aligned_cols=118 Identities=15% Similarity=0.216 Sum_probs=73.6
Q ss_pred ccccHHHHhccC-CCeeEEEeecCChhhH-HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE--------
Q psy16953 258 VYKKMEDAMSKN-KDADVLVNFASLRSAY-DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII-------- 327 (806)
Q Consensus 258 ~y~sv~daip~~-~Dlavivi~~~~~~~~-~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii-------- 327 (806)
.+..+.+ +.+. +++-|+ . -.+-+ +--+.+....|..++.+|++=+++.+.++|.++|++.||..+
T Consensus 168 s~e~L~~-vr~~~v~lPvL---r-KDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~E 242 (338)
T PLN02460 168 SFENLEA-IRNAGVKCPLL---C-KEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDERE 242 (338)
T ss_pred CHHHHHH-HHHcCCCCCEe---e-ccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 3555556 4554 666554 1 11111 112333444899999999998888888899999999888664
Q ss_pred --------ccCccccccCC--ccccccCCCCccc--ccccC---CCCCCCEEEEeCChhHHHHHHHHHHhcC
Q psy16953 328 --------GPATVGGLKPG--CFKIGNTGGMMDN--ILHSK---LYRPGSVAYVSRSGGMSNELNNIISKAT 384 (806)
Q Consensus 328 --------GPN~~Gii~p~--~~~ig~~~g~~~~--~~~~~---~~~~G~ValvSQSG~l~~~l~~~~~~~g 384 (806)
|+.-+||-|-+ .|.+. +..+ ..+.. ..+|-.+-+||-||--+.+=+..+.+.|
T Consensus 243 lerAl~~~ga~iIGINNRdL~Tf~vD----l~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G 310 (338)
T PLN02460 243 MDRVLGIEGVELIGINNRSLETFEVD----ISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG 310 (338)
T ss_pred HHHHHhcCCCCEEEEeCCCCCcceEC----HHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC
Confidence 78888887743 22211 1111 11210 2334578899999999888777777755
No 331
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=42.51 E-value=1e+02 Score=31.71 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhcc-CC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMSK-NK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip~-~~ 270 (806)
.+++|+|+|.++- .+++|...| .|+++.+.++.-+. +++..+.+|.+--..+++.+.+ .|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G----------v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG----------VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC----------CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 6789999998853 588999998 58899998873100 1122233331111111111221 34
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
++.+-. .+....+.-+++.- ++... ||.+.+-. .....+.++|+++++.++-..+.|+.
T Consensus 90 ~v~i~~---~~~~i~~~~~~~~~-~~~D~-Vi~~~d~~-~~r~~l~~~~~~~~ip~i~~~~~g~~ 148 (202)
T TIGR02356 90 DIQVTA---LKERVTAENLELLI-NNVDL-VLDCTDNF-ATRYLINDACVALGTPLISAAVVGFG 148 (202)
T ss_pred CCEEEE---ehhcCCHHHHHHHH-hCCCE-EEECCCCH-HHHHHHHHHHHHcCCCEEEEEeccCe
Confidence 444431 12111122233322 34443 44444332 34556888999999998877766643
No 332
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=42.47 E-value=81 Score=33.72 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=44.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++-.-..- -|...+ ......+
T Consensus 95 ~~~kPvIaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l-------- 161 (260)
T PRK07657 95 QLPQPVIAAINGIALG-GGLELALACDFRIAAESAS----LGLTETTLAIIPGAGGTQRLPRLIGVGRAKEL-------- 161 (260)
T ss_pred hCCCCEEEEEcCEeec-hHHHHHHhCCEEEeeCCCE----EcCchhccCcCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2445444444444444432 33344556664322211 122111 0011112
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|.+.|++
T Consensus 162 ----~l~g~~~~a~eA~~~Glv 179 (260)
T PRK07657 162 ----IYTGRRISAQEAKEIGLV 179 (260)
T ss_pred ----HHhCCCCCHHHHHHcCCC
Confidence 134557888888888976
No 333
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=42.46 E-value=70 Score=34.32 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. -|-+-+..+-=.++.++.. +---.-+.|+...-. ..-+...+- .....+
T Consensus 94 ~~~kPvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l-------- 160 (261)
T PRK11423 94 KFPKPVIAMVEGSVWG-GAFELIMSCDLIIAASTST----FAMTPANLGVPYNLSGILNFTNDAGFHIVKEM-------- 160 (261)
T ss_pred hCCCCEEEEEecEEec-hHHHHHHhCCEEEecCCCE----ecCchhhcCCCCCccHHHHHHHHhHHHHHHHH--------
Confidence 3789999999888774 2444555554444444432 322334566643211 111111111 111222
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...|++..+|++.|++
T Consensus 161 ----~l~g~~~~a~eA~~~GLv 178 (261)
T PRK11423 161 ----FFTASPITAQRALAVGIL 178 (261)
T ss_pred ----HHcCCCcCHHHHHHcCCc
Confidence 235667888889999986
No 334
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=42.29 E-value=2.9e+02 Score=30.15 Aligned_cols=26 Identities=42% Similarity=0.902 Sum_probs=23.3
Q ss_pred EcCCCHHHHHHHHHHhcccCCccEEE
Q psy16953 136 RAGPNYQEGLRIIREVGKTLGIPLFV 161 (806)
Q Consensus 136 ~~G~n~~eG~~~l~~~g~~~g~~i~~ 161 (806)
..|+..+||+++|++.++++|+||..
T Consensus 61 FqG~G~eeGL~~L~~vk~~~GlpvvT 86 (264)
T PRK05198 61 FRGPGLEEGLKILQEVKETFGVPVLT 86 (264)
T ss_pred CCCCChHHHHHHHHHHHHHHCCceEE
Confidence 45888899999999999999999875
No 335
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.24 E-value=4.8e+02 Score=28.29 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred ceeEeecCCCcccccccceeecccccccHHHHhcc----------CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEE
Q psy16953 234 AMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK----------NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAII 303 (806)
Q Consensus 234 g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~----------~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~vii 303 (806)
|-++|.++. ...+|.++..-+..++.+ .+++.+..--..|..+...+-+-..+.+|. ++
T Consensus 3 G~~~plsG~--------~a~~G~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~---~i 71 (340)
T cd06349 3 GVAGPLTGD--------NAQYGTQWKRAFDLALDEINAAGGVGGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIV---AV 71 (340)
T ss_pred eEEecCCCc--------chhcCccHHHHHHHHHHHHHhhCCcCCeEEEEEEeCCCCChHHHHHHHHHHhccCCeE---EE
Q ss_pred cCCCCHHHHHHHHHHHHHcCCeEEccCc--cccccCCccccccCCCCccccccc-----CCCCCCCEEEEeCChhHHHHH
Q psy16953 304 AEGIPENMTRKLNLLAKEKGVSIIGPAT--VGGLKPGCFKIGNTGGMMDNILHS-----KLYRPGSVAYVSRSGGMSNEL 376 (806)
Q Consensus 304 s~Gf~E~~~~~l~~~a~~~giriiGPN~--~Gii~p~~~~ig~~~g~~~~~~~~-----~~~~~G~ValvSQSG~l~~~l 376 (806)
-+++.-.....+...+.+.++.+++|++ ..+.+.....+............. ......+|+++.++...+..+
T Consensus 72 ~G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~ 151 (340)
T cd06349 72 LGDFSSGVSMAASPIYQRAGLVQLSPTNSHPDFTKGGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTS 151 (340)
T ss_pred ECCCccHhHHHhHHHHHhCCCeEEecCCCCCccccCCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHH
Q ss_pred HHHHHhc----CCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEE
Q psy16953 377 NNIISKA----TNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLV 447 (806)
Q Consensus 377 ~~~~~~~----g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV 447 (806)
...+.+. |+.+......-.. ..++...+.-+.+. +.++|++.+. +-.-..|.+++++.....|++
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~---~~d~~~~v~~l~~~-~~d~v~~~~~--~~~~~~~~~~~~~~g~~~~~~ 220 (340)
T cd06349 152 ADIFVKAAEKLGGQVVAHEEYVPG---EKDFRPTITRLRDA-NPDAIILISY--YNDGAPIARQARAVGLDIPVV 220 (340)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCC---CCcHHHHHHHHHhc-CCCEEEEccc--cchHHHHHHHHHHcCCCCcEE
No 336
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=42.03 E-value=3.7e+02 Score=31.95 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=55.1
Q ss_pred EEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccC-CCeeEEEeecCCh
Q psy16953 207 VWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKN-KDADVLVNFASLR 282 (806)
Q Consensus 207 V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~-~Dlavivi~~~~~ 282 (806)
.+|.+.. .++.|.+.|. .+.-++..|+ +.. -+...+++ +.+. ||+.|+ +-.-
T Consensus 235 avg~~~~~~~~~~~l~~ag~-----------d~i~id~a~G------~s~---~~~~~i~~-ik~~~~~~~v~---aG~V 290 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGV-----------DVLVVDSSQG------NSI---YQIDMIKK-LKSNYPHVDII---AGNV 290 (495)
T ss_pred EECCCHHHHHHHHHHHHCCC-----------CEEEEecCCC------Cch---HHHHHHHH-HHhhCCCceEE---ECCc
Confidence 4555443 3667888774 4455555432 111 12345555 4433 677666 2122
Q ss_pred hhHHHHHHHhcCCCCCEEEE-EcC------------CCCH-HHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 283 SAYDSTIETLGFPQIRSIAI-IAE------------GIPE-NMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~vi-is~------------Gf~E-~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
...++ .+.+.++|+..+.+ +.. |.|. ....++.+.+++.|+.+|-= -|+-+|+
T Consensus 291 ~t~~~-a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIad--GGi~~~~ 357 (495)
T PTZ00314 291 VTADQ-AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIAD--GGIKNSG 357 (495)
T ss_pred CCHHH-HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEec--CCCCCHH
Confidence 22333 33444588887754 222 3454 33456778888889888732 2555554
No 337
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=41.83 E-value=54 Score=35.47 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccC-C-hhhHHHHHH-HHHHhhhhCCccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPS-S-FDTLGDIIG-SVYKDLVSRGDIV 517 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~-~-~~EL~~~~~-all~~L~~~g~i~ 517 (806)
...||||+..-|.+-. .|-+-+..+-=.++.++.. +.--+-+.|++-++ . ..-|...+- .....+
T Consensus 111 ~~~kPvIAaV~G~a~G-gG~~LalacD~ria~~~a~----f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l------- 178 (277)
T PRK08258 111 ACPQPIIAAVDGVCAG-AGAILAMASDLRLGTPSAK----TAFLFTRVGLAGADMGACALLPRIIGQGRASEL------- 178 (277)
T ss_pred hCCCCEEEEECCeeeh-HHHHHHHhCCEEEecCCCE----EeccccccCcCCCCchHHHHHHHHhCHHHHHHH-------
Confidence 3789999999999875 2555555554445554432 33344556765322 1 111222110 011122
Q ss_pred cCCCCCCCCCcccchHHhhcccc
Q psy16953 518 PQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 179 -----~ltg~~~~a~eA~~~Glv 196 (277)
T PRK08258 179 -----LYTGRSMSAEEGERWGFF 196 (277)
T ss_pred -----HHcCCCCCHHHHHHcCCC
Confidence 235568888889999985
No 338
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=41.81 E-value=5.2e+02 Score=29.00 Aligned_cols=21 Identities=5% Similarity=0.070 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCCCEEEEEcCC
Q psy16953 286 DSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~G 306 (806)
..++++|.+.++|.+|.+|++
T Consensus 118 ~nll~aa~~~~vk~~V~~SS~ 138 (370)
T PLN02695 118 FNMLEAARINGVKRFFYASSA 138 (370)
T ss_pred HHHHHHHHHhCCCEEEEeCch
Confidence 457888988899988888763
No 339
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=41.68 E-value=48 Score=36.86 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=43.1
Q ss_pred cchhchHHHHHhhCCCCcccccccccccccCCCH-HHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 6 ISEATGKDIINRNLDPNTAAAKCRFAAVKEETSW-AELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 6 i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
..-+..|++|.+++. |++ +... ++..... ........-++ .|+||||-.--+.+ +|.+..+.+|..+++
T Consensus 122 ~DK~~~k~~l~~~GI--p~p-~~~~--~~~~~~~~~~~~~~~~~~~-~P~vVKP~~~gsS~----Gv~~v~~~~el~~a~ 191 (333)
T PRK01966 122 MDKILTKRLLAAAGI--PVA-PYVV--LTRGDWEEASLAEIEAKLG-LPVFVKPANLGSSV----GISKVKNEEELAAAL 191 (333)
T ss_pred hCHHHHHHHHHHcCC--CCC-CEEE--EeccccchhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHHHHH
Confidence 345677899999988 665 4333 2222211 11111112233 69999997643332 356666899999998
Q ss_pred HHHc
Q psy16953 85 SERM 88 (806)
Q Consensus 85 ~~~~ 88 (806)
++..
T Consensus 192 ~~~~ 195 (333)
T PRK01966 192 DLAF 195 (333)
T ss_pred HHHH
Confidence 8765
No 340
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=41.58 E-value=1.1e+02 Score=30.19 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=31.5
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC--CCCCEEEEEcCCC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF--PQIRSIAIIAEGI 307 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~--~gvk~~viis~Gf 307 (806)
+.+..++++++. ..|+.++ ++|.....++++++.. +.=..+++.+-||
T Consensus 57 i~~t~dl~~a~~-~ad~Iii---avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 57 IKATTDLEEALE-DADIIII---AVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EEEESSHHHHHT-T-SEEEE----S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccccCHHHHhC-cccEEEe---cccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 667889998665 4566555 7799999999999974 2224466667799
No 341
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.91 E-value=1.2e+02 Score=34.02 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=41.8
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhc---CCCCCEEEEEcCCCCHHHHHHHHHHHHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLG---FPQIRSIAIIAEGIPENMTRKLNLLAKE 321 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~---~~gvk~~viis~Gf~E~~~~~l~~~a~~ 321 (806)
+.+..++.+|+. ..|+.++ ++|...+.++++.+. .++.+ +|..+-||-....+.+-+++++
T Consensus 59 l~at~Dl~~a~~-~ad~iv~---avPs~~~r~v~~~l~~~l~~~~~-iv~~sKGie~~t~~l~seii~e 122 (329)
T COG0240 59 LKATTDLAEALD-GADIIVI---AVPSQALREVLRQLKPLLLKDAI-IVSATKGLEPETGRLLSEIIEE 122 (329)
T ss_pred cccccCHHHHHh-cCCEEEE---ECChHHHHHHHHHHhhhccCCCe-EEEEeccccCCCcchHHHHHHH
Confidence 778999999644 3566555 789999999999874 35544 6666789966444444444443
No 342
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=40.72 E-value=3.5e+02 Score=28.94 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=91.5
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC-ccccccCCCCccccccc----
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG-CFKIGNTGGMMDNILHS---- 355 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~-~~~ig~~~g~~~~~~~~---- 355 (806)
+..............+|.+ ||..+-+ .....+..++...++.+|.|.|.--.... +.+ ........|.
T Consensus 36 ~~~~~~~~~~~~~~~~v~a--viGp~~~-~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~----~~~~~r~~p~~~~~ 108 (348)
T PF01094_consen 36 DSFALQAAICSLNKQGVVA--VIGPSCS-SSAEAVASLASEWNIPQISPGSTSPSLSDRKTR----YPTFFRTVPSDSSQ 108 (348)
T ss_dssp THHHHHHHHHHHHHHTECE--EEETSSH-HHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTT----TTTEEESSB-HHHH
T ss_pred CcccccchhhhccCCCcEE--EECCCcc-cccchhheeecccccceeeccccccccccchhh----ccccccccccHHHH
Confidence 4444444444444455543 3343333 35667788889999999999654322111 000 0001111111
Q ss_pred --------CCCCCCCEEEEeCChhH----HHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEE
Q psy16953 356 --------KLYRPGSVAYVSRSGGM----SNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLL 422 (806)
Q Consensus 356 --------~~~~~G~ValvSQSG~l----~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly 422 (806)
..+.=-.|++|..+... ...+.+.+.+.+.........-.. .+.+..+++..+.+ ....++|+++
T Consensus 109 ~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~rvvil~ 186 (348)
T PF01094_consen 109 ARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVIS--SDSDAEELLKKLKEIKSGARVVILC 186 (348)
T ss_dssp HHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEET--TTSHHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceecccccccc--cccchhhhhhhhhhccccceeeeee
Confidence 01344579999999988 555666666666555544333333 45677788888777 5778899998
Q ss_pred EccCCcch-HHHHHHHHhcCC-CCCEEEEEeC
Q psy16953 423 GEVGGVEE-YEVCAALKDKRI-TKPLVAWCIG 452 (806)
Q Consensus 423 ~Eigg~~d-~~f~~a~r~~~~-~KPVV~lk~G 452 (806)
+. ..+ +.|++++.+... +.+.+.+-++
T Consensus 187 ~~---~~~~~~~l~~a~~~~~~~~~~~~i~~~ 215 (348)
T PF01094_consen 187 SS---PEDARQFLEAAYELGMTSGDYVWILTD 215 (348)
T ss_dssp SB---HHHHHHHHHHHHHTTTSSTTSEEEEET
T ss_pred cc---cccccccccchhhhhccccceeEEeec
Confidence 88 444 889888877543 4444444333
No 343
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=40.38 E-value=63 Score=32.43 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=65.7
Q ss_pred HHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC--CCCCEEEEEeCcCcCcCccccccccc-CCcCCCCcccHHHH
Q psy16953 405 DHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR--ITKPLVAWCIGTCASMFTSEVQFGHA-GSCANSDAETAVVK 481 (806)
Q Consensus 405 D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~--~~KPVV~lk~Grs~~~~g~~aa~sHt-Galag~~~~~a~~~ 481 (806)
+.+..+...| .-|++++|.|.=+ ..|++++.+.+ ..+|.|.+..+.-.+-.-...-++|. |+..+.... .
T Consensus 13 ~~~~~~a~~~--~pVlI~GE~GtGK-~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~----~ 85 (168)
T PF00158_consen 13 EQAKRAASSD--LPVLITGETGTGK-ELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSD----K 85 (168)
T ss_dssp HHHHHHTTST--S-EEEECSTTSSH-HHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSE----B
T ss_pred HHHHHHhCCC--CCEEEEcCCCCcH-HHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccc----c
Confidence 3444445444 6788999964433 66788888864 57899999876544200012234552 333333332 2
Q ss_pred HHHHHH--cCCcccCChhhHHHHHHHHHHhhhhCCccccCC
Q psy16953 482 NKSLAQ--AGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQP 520 (806)
Q Consensus 482 ~aa~~q--aGvi~v~~~~EL~~~~~all~~L~~~g~i~~~~ 520 (806)
..+|.+ -|.+.-+++++|...++.-+-+++++|...+..
T Consensus 86 ~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 86 KGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp EHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCT
T ss_pred CCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcccc
Confidence 235554 589999999999999998887776766665543
No 344
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=40.25 E-value=1e+02 Score=34.63 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCccccccc-ceeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWG-HKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g-~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
...+|.|+|.+. ...+||.++|+ +|.-.++..+ . |- ....+..++ |++|+ -...|+.++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~-----------~ViV~~r~~~-s--~~~A~~~G~~v~-sl~Ea-ak~ADVV~l- 77 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGV-----------EVVVGVRPGK-S--FEVAKADGFEVM-SVSEA-VRTAQVVQM- 77 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcC-----------EEEEEECcch-h--hHHHHHcCCEEC-CHHHH-HhcCCEEEE-
Confidence 556799999763 34789999998 3433332211 0 00 011244443 89995 444566555
Q ss_pred eecCChhhHHHHHHH--hcCCCCCEEEEEcCCCC
Q psy16953 277 NFASLRSAYDSTIET--LGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 277 i~~~~~~~~~~~le~--~~~~gvk~~viis~Gf~ 308 (806)
.+|.. ....++.+ +....-..++++|-||.
T Consensus 78 -lLPd~-~t~~V~~~eil~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 78 -LLPDE-QQAHVYKAEVEENLREGQMLLFSHGFN 109 (335)
T ss_pred -eCCCh-HHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 45433 33455532 33333457899999984
No 345
>PLN02591 tryptophan synthase
Probab=40.21 E-value=3.1e+02 Score=29.54 Aligned_cols=68 Identities=13% Similarity=0.307 Sum_probs=46.1
Q ss_pred cccccHHHHhccCCCeeE-EEeecCC--hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 257 PVYKKMEDAMSKNKDADV-LVNFASL--RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 257 p~y~sv~daip~~~Dlav-ivi~~~~--~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
.++..+.+ +.+.++.-+ +.....+ ..-++..+++|.+.|+.+++|. ..|-+...++.+.|+++|+..|
T Consensus 65 ~~~~~~~~-~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 65 SVISMLKE-VAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHHH-HhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEE
Confidence 34555555 444444332 2222222 3467889999999999998874 6777788899999999997665
No 346
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=39.90 E-value=92 Score=33.04 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=46.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.- +..-.-+.|+....-.-. |...+ ......+
T Consensus 84 ~~~kP~Iaav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l-------- 150 (243)
T PRK07854 84 AAPVPVIAAINGPAIG-AGLQLAMACDLRVVAPEAY----FQFPVAKYGIALDNWTIRRLSSLVGGGRARAM-------- 150 (243)
T ss_pred hCCCCEEEEecCcccc-cHHHHHHhCCEEEEcCCCE----EeccccccccCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999999875 3555555554444544432 333445566653322111 11111 0111122
Q ss_pred CCCCCCCCCcccchHHhhcccccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLIRK 542 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~r~ 542 (806)
=-...|++..+|++.|++..
T Consensus 151 ----~ltg~~~~a~eA~~~Glv~~ 170 (243)
T PRK07854 151 ----LLGAEKLTAEQALATGMANR 170 (243)
T ss_pred ----HHcCCCcCHHHHHHCCCccc
Confidence 23566889999999998643
No 347
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=39.61 E-value=5.5e+02 Score=28.16 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEccCccc--cccC----CccccccCCCCccc--cc-c--cCCCCCCCEEEEeCChhHH
Q psy16953 305 EGIPENMTRKLNLLAKEKGVSIIGPATVG--GLKP----GCFKIGNTGGMMDN--IL-H--SKLYRPGSVAYVSRSGGMS 373 (806)
Q Consensus 305 ~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii~p----~~~~ig~~~g~~~~--~~-~--~~~~~~G~ValvSQSG~l~ 373 (806)
+++.......+.+.++++++.+|+|++-. +.+| ..+++. ...... .+ . ......-+|++|.+....+
T Consensus 80 G~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 157 (362)
T cd06343 80 GGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQ--PSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFG 157 (362)
T ss_pred ecCCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecC--CChHHHHHHHHHHHHHhCCCceEEEEEeccHHH
Confidence 34444445667778889999999986522 2222 111111 000000 00 0 0112234799999888777
Q ss_pred HHHHHH----HHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCCCCEEE
Q psy16953 374 NELNNI----ISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 374 ~~l~~~----~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~ 448 (806)
...... +.++|+-+......-. ...++...+..+.+ ...++|++..- ..+ ..|++.+++...+.+++.
T Consensus 158 ~~~~~~~~~~~~~~G~~vv~~~~~~~---~~~d~~~~v~~i~~-~~~d~v~~~~~---~~~~~~~~~~~~~~g~~~~~~~ 230 (362)
T cd06343 158 KDYLKGLKDGLGDAGLEIVAETSYEV---TEPDFDSQVAKLKA-AGADVVVLATT---PKFAAQAIRKAAELGWKPTFLL 230 (362)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeecC---CCccHHHHHHHHHh-cCCCEEEEEcC---cHHHHHHHHHHHHcCCCceEEE
Confidence 666544 4555654433333322 24567777777653 44566666554 345 779999888765544443
No 348
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=39.45 E-value=88 Score=34.00 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-h-HHHHH-HHHHHhhhhCCccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-T-LGDII-GSVYKDLVSRGDIV 517 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-E-L~~~~-~all~~L~~~g~i~ 517 (806)
...||||+..-|.+.. .|-.-+..+-=.++.++.. +.--.-+.|+..+.... . |...+ ......+
T Consensus 105 ~~~kPvIAaV~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~l------- 172 (278)
T PLN03214 105 RSRLATVCAIRGACPA-GGCAVSLCCDYRLQTTEGT----MGLNEVALGIPVPKFWARLFMGRVIDRKVAESL------- 172 (278)
T ss_pred cCCCCEEEEEcCcccc-hHHHHHHhCCEEEecCCCE----ecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHH-------
Confidence 3689999999998875 2555555554444444432 33344566774332221 1 11111 0111111
Q ss_pred cCCCCCCCCCcccchHHhhcccc
Q psy16953 518 PQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 173 -----lltg~~~~a~eA~~~Glv 190 (278)
T PLN03214 173 -----LLRGRLVRPAEAKQLGLI 190 (278)
T ss_pred -----HHcCCccCHHHHHHcCCC
Confidence 134557888888888875
No 349
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=39.37 E-value=5.3e+02 Score=28.68 Aligned_cols=81 Identities=7% Similarity=0.067 Sum_probs=52.7
Q ss_pred CCCCCEEEEeCChhHH----HHHHHHHHhcCC----ceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 358 YRPGSVAYVSRSGGMS----NELNNIISKATN----GVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~----~~l~~~~~~~g~----G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
+..-.|++|.++...+ ..+.+.+++.|+ -+......-. .+.++...+..+.. .+.++|+++.. ..
T Consensus 152 ~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~---~~~d~~~~l~~ik~-~~~~vIvl~~~---~~ 224 (377)
T cd06379 152 FKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEP---GEKNVTSLLQEAKE-LTSRVILLSAS---ED 224 (377)
T ss_pred cCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCC---chhhHHHHHHHHhh-cCCeEEEEEcC---HH
Confidence 4566899999988744 344455566665 4444333322 24567788887754 57788888776 55
Q ss_pred h-HHHHHHHHhcCCCCC
Q psy16953 430 E-YEVCAALKDKRITKP 445 (806)
Q Consensus 430 d-~~f~~a~r~~~~~KP 445 (806)
+ ..+++.+++.....+
T Consensus 225 ~~~~l~~qa~~~g~~~~ 241 (377)
T cd06379 225 DAAVIYRNAGMLNMTGE 241 (377)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 6 888888888764443
No 350
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=39.27 E-value=3.7e+02 Score=29.21 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ceeEeecCCCcccccccceeecccccccHHHHhcc----------CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEE
Q psy16953 234 AMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK----------NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAII 303 (806)
Q Consensus 234 g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~----------~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~vii 303 (806)
|-+.|.++. ....+..+...+..|+.+ .+++.+...-..+..++..+.+.+.+.+|..++
T Consensus 3 G~l~p~sG~--------~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aii-- 72 (346)
T cd06330 3 GVITFLSGR--------AAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRDEAGKPDEAIREARELVENEGVDMLI-- 72 (346)
T ss_pred eEEeecCCc--------hhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEE--
Q ss_pred cCCCCHHHHHHHHHHHHHcCCeEEccCccc------cccCCccccccCCCCcccccccCCCCCC----CEEEEeCChhHH
Q psy16953 304 AEGIPENMTRKLNLLAKEKGVSIIGPATVG------GLKPGCFKIGNTGGMMDNILHSKLYRPG----SVAYVSRSGGMS 373 (806)
Q Consensus 304 s~Gf~E~~~~~l~~~a~~~giriiGPN~~G------ii~p~~~~ig~~~g~~~~~~~~~~~~~G----~ValvSQSG~l~ 373 (806)
..........+...+++.++.++.|++-. --++..++++................-+ +|+++......+
T Consensus 73 -g~~~s~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g 151 (346)
T cd06330 73 -GLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYG 151 (346)
T ss_pred -cccchHHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHH
Q ss_pred ----HHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcCC--CCCEE
Q psy16953 374 ----NELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRI--TKPLV 447 (806)
Q Consensus 374 ----~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~--~KPVV 447 (806)
..+...+++.|.|+..+-..--.. .+.++...+.-+.+ -...+|++..- +..-..|++.+++... +.|++
T Consensus 152 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~~v~~i~~-~~~d~ii~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 227 (346)
T cd06330 152 QDAWADFKAALKRLRPDVEVVSEQWPKL-GAPDYGSEITALLA-AKPDAIFSSLW--GGDLVTFVRQANARGLFDGTTVV 227 (346)
T ss_pred HHHHHHHHHHHHHhCCCCeecccccCCC-CCcccHHHHHHHHh-cCCCEEEEecc--cccHHHHHHHHHhcCcccCceEE
Q ss_pred E
Q psy16953 448 A 448 (806)
Q Consensus 448 ~ 448 (806)
.
T Consensus 228 ~ 228 (346)
T cd06330 228 L 228 (346)
T ss_pred e
No 351
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=39.12 E-value=65 Score=34.84 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCC-hhhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSS-FDTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~-~~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|++-..- ..-|...+- .....+
T Consensus 105 ~~~kPvIAav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l-------- 171 (273)
T PRK07396 105 TCPKPVIAMVAGYAIG-GGHVLHLVCDLTIAADNAI----FGQTGPKVGSFDGGYGASYLARIVGQKKAREI-------- 171 (273)
T ss_pred hCCCCEEEEECCEEeh-HHHHHHHhCCEEEeeCCcE----EecccccccccCCchHHHHHHHHhhHHHHHHH--------
Confidence 3789999999888774 2444444443334443332 222233455543211 111221110 111112
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=...-+++..+|++.|++
T Consensus 172 ----~ltg~~~~A~eA~~~GLv 189 (273)
T PRK07396 172 ----WFLCRQYDAQEALDMGLV 189 (273)
T ss_pred ----HHhCCCcCHHHHHHcCCc
Confidence 124457888889999985
No 352
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=39.01 E-value=92 Score=33.06 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHcCCeeEEEEEecccc--chhhhhhhhhHH-HHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhc
Q psy16953 76 DFKGAQSWISERMGKDQVVLITGGGIA--NFTNVAATFKGI-VTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152 (806)
Q Consensus 76 ~~~e~~~~~~~~~g~~i~~~~i~GGI~--~~~~vA~~~~gi-i~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g 152 (806)
+..-.++++..+..+...+|+|.|.|+ ++.+...+-+.+ ++++ .+..+|+++-.+=+...+=.+.+++++
T Consensus 15 ~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l-------~~~~~~v~avpGNcD~~~v~~~l~~~~ 87 (226)
T COG2129 15 SEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEAL-------KELGIPVLAVPGNCDPPEVIDVLKNAG 87 (226)
T ss_pred chHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHH-------HhcCCeEEEEcCCCChHHHHHHHHhcc
Confidence 455678888888888999999999999 888877542221 2233 447999999999988888889999874
No 353
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=38.62 E-value=1.5e+02 Score=31.91 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=54.0
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccc-cccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKF-YWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~-~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
.+|.++|.+. ...++|++.|.+ . .-.|+-.|++..... .| ....++....+..+ +.+..|+.++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~---~----~~~v~v~~r~~~~~~~~l-~~~~g~~~~~~~~e-~~~~aDvVil--- 71 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVV---K----GEQITVSNRSNETRLQEL-HQKYGVKGTHNKKE-LLTDANILFL--- 71 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---C----cceEEEECCCCHHHHHHH-HHhcCceEeCCHHH-HHhcCCEEEE---
Confidence 4799999764 347788887620 0 124555655310000 00 01124556677777 4455566555
Q ss_pred cCChhhHHHHHHHhcCC--CCCEEEEEcCCCCHHHHHH
Q psy16953 279 ASLRSAYDSTIETLGFP--QIRSIAIIAEGIPENMTRK 314 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~~--gvk~~viis~Gf~E~~~~~ 314 (806)
++++....++++.+... .=+.+|-+++|++.+..++
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 55666777777776521 1123444568997654444
No 354
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=38.57 E-value=36 Score=38.19 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=20.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSD 474 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~ 474 (806)
...||||+..-|.+-. .|..-+.+.-=.++.++
T Consensus 98 ~~~kPvIAaVnG~a~G-gG~~LalacD~ria~~~ 130 (342)
T PRK05617 98 RYPKPYIALMDGIVMG-GGVGISAHGSHRIVTER 130 (342)
T ss_pred hCCCCEEEEEcCEEEc-cHhHHhhhCCEEEEcCC
Confidence 3689999999998875 24444444433334333
No 355
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=38.54 E-value=71 Score=36.26 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=13.7
Q ss_pred CCCcccchHHhhccccc
Q psy16953 525 PTVPMDYSWARELGLIR 541 (806)
Q Consensus 525 ~~~PMd~~~a~~~g~~r 541 (806)
..-|++...|++.|++.
T Consensus 191 tGe~~sA~EA~~~GLVd 207 (360)
T TIGR03200 191 LCEPWSAHKAKRLGIIM 207 (360)
T ss_pred hCCcCcHHHHHHcCChh
Confidence 45688888999999874
No 356
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=38.53 E-value=1.3e+02 Score=33.81 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=42.1
Q ss_pred cccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC-CHHHHHHHHHHHHH-cCCeEEccCcccccc
Q psy16953 259 YKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI-PENMTRKLNLLAKE-KGVSIIGPATVGGLK 336 (806)
Q Consensus 259 y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf-~E~~~~~l~~~a~~-~giriiGPN~~Gii~ 336 (806)
+.+..+++ ..+|++++ +.+.....+.+.+.+. +|+..+...--.. .++..++|-++|++ .++.++| ..++
T Consensus 51 ~~d~~e~l-~~iDVViI--ctPs~th~~~~~~~L~-aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~----~GwD 122 (324)
T TIGR01921 51 VADDEKHL-DDVDVLIL--CMGSATDIPEQAPYFA-QFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS----TGWD 122 (324)
T ss_pred cCCHHHhc-cCCCEEEE--cCCCccCHHHHHHHHH-cCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE----CCCC
Confidence 33555533 45666555 5555556666666655 8877433321111 12457778888887 5889988 3456
Q ss_pred CC
Q psy16953 337 PG 338 (806)
Q Consensus 337 p~ 338 (806)
|+
T Consensus 123 PG 124 (324)
T TIGR01921 123 PG 124 (324)
T ss_pred cC
Confidence 66
No 357
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=38.46 E-value=5.2e+02 Score=28.17 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=78.0
Q ss_pred HHHHHh-cCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--cccCCccccccCCCCcc----cccccCCCC
Q psy16953 287 STIETL-GFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GLKPGCFKIGNTGGMMD----NILHSKLYR 359 (806)
Q Consensus 287 ~~le~~-~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii~p~~~~ig~~~g~~~----~~~~~~~~~ 359 (806)
...+.+ .+.+|..++ +++.-.....+..+++++++.++.|+... ..++..|+++.+..... .+.. .-.
T Consensus 57 ~~~~~Li~~~~V~aii---G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~--~~~ 131 (334)
T cd06356 57 QYAQRLALQDKVDVVW---GGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMM--EKY 131 (334)
T ss_pred HHHHHHHHhCCCCEEE---eCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHH--Hcc
Confidence 344444 445676443 33333345667778889999999875432 22343344432211100 0111 011
Q ss_pred CCCEEEEeCChhHHHH----HHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCCcchHHHH
Q psy16953 360 PGSVAYVSRSGGMSNE----LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLLGEVGGVEEYEVC 434 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~----l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly~Eigg~~d~~f~ 434 (806)
.-+|++|.+....+.. +...+.+.|.-+...+.. +....|+...+.-+.+ +| .+|++..= +...-.|+
T Consensus 132 ~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~---~~~~~d~~~~v~~l~~~~p--d~v~~~~~--~~~~~~~~ 204 (334)
T cd06356 132 GKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFI---PLDVSDFGSTIQKIQAAKP--DFVMSILV--GANHLSFY 204 (334)
T ss_pred CCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeec---CCCchhHHHHHHHHHhcCC--CEEEEecc--CCcHHHHH
Confidence 2459999887655553 334556666544322222 1124567777777655 44 45544332 12236788
Q ss_pred HHHHhcCC-CCCEEE
Q psy16953 435 AALKDKRI-TKPLVA 448 (806)
Q Consensus 435 ~a~r~~~~-~KPVV~ 448 (806)
+.+++... +.|++.
T Consensus 205 ~~~~~~G~~~~~~~~ 219 (334)
T cd06356 205 RQWAAAGLGNIPMAS 219 (334)
T ss_pred HHHHHcCCccCceee
Confidence 88887665 557665
No 358
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=37.92 E-value=61 Score=34.51 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=54.3
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...+.|.+.|+ + .-.|+-++++......+ .+..++.+..+..++ -...|+.++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~-----~~~v~v~~r~~~~~~~~-~~~~g~~~~~~~~~~-~~~advVil---~ 69 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---P-----AKDIIVSDPSPEKRAAL-AEEYGVRAATDNQEA-AQEADVVVL---A 69 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---C-----cceEEEEcCCHHHHHHH-HHhcCCeecCChHHH-HhcCCEEEE---E
Confidence 3688999753 23566766662 0 12455555542100000 011245566777773 455676665 6
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHH
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENM 311 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~ 311 (806)
+++..+.++++++...-=+.++-+++|++.+.
T Consensus 70 v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~ 101 (267)
T PRK11880 70 VKPQVMEEVLSELKGQLDKLVVSIAAGVTLAR 101 (267)
T ss_pred cCHHHHHHHHHHHHhhcCCEEEEecCCCCHHH
Confidence 67778899998886321146777788997543
No 359
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.83 E-value=1.8e+02 Score=28.34 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=46.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecC---ChhhHHHHHHHhcCCCCCEEEEEcCCC---CHHHHHHHHHHHHHcCC-eEEc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFAS---LRSAYDSTIETLGFPQIRSIAIIAEGI---PENMTRKLNLLAKEKGV-SIIG 328 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~---~~~~~~~~le~~~~~gvk~~viis~Gf---~E~~~~~l~~~a~~~gi-riiG 328 (806)
+|.-.=++.|....||+..+ ++. .......+++.+.+.+.+.+.|+-+|- ++.+..+..+.+++.|+ ++.+
T Consensus 41 vp~e~i~~~a~~~~~d~V~l--S~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILV--SSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEE--cCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 34333344444566776555 332 234556788888877775565555554 34567777777888886 6888
Q ss_pred cCc
Q psy16953 329 PAT 331 (806)
Q Consensus 329 PN~ 331 (806)
|++
T Consensus 119 ~~~ 121 (137)
T PRK02261 119 PGT 121 (137)
T ss_pred cCC
Confidence 876
No 360
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.71 E-value=3.1e+02 Score=29.46 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=90.3
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHH-HcCCe-EEccCccccccCCccccccCCCCcccccccCCCC
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAK-EKGVS-IIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYR 359 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~-~~gir-iiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~ 359 (806)
...+.++++|...|..+++|=.+ |..++..+++++..| ++++. ++=|++...++|.- +. -|.|+ .+.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~a------Da---vff~s-vLN 97 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYA------DA---VFFPS-VLN 97 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccC------Ce---EEEEE-Eec
Confidence 45577888988899998777554 788888888888888 78874 57788888888751 11 13332 345
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEe--------ecCCCCCCCCHHHHHHHhhcCC-CccEEEEEEccCCcch
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVA--------IGGDRYPGTTFMDHILRYQADP-EVKMIVLLGEVGGVEE 430 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs--------~Gn~~~~d~~~~D~l~~l~~Dp-~Tk~I~ly~Eigg~~d 430 (806)
.++.-+|..-=..+.-++......-+-..|+|- +|....++.+-.|+.-|+.--. --..=++|+|-||...
T Consensus 98 S~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~ 177 (240)
T COG1646 98 SDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAG 177 (240)
T ss_pred CCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCC
Confidence 566677766544444444433333344444331 2222335666667666543222 2345578999777765
Q ss_pred -HHHHHHHHhc
Q psy16953 431 -YEVCAALKDK 440 (806)
Q Consensus 431 -~~f~~a~r~~ 440 (806)
+.--+++++.
T Consensus 178 ~Pv~~e~v~~v 188 (240)
T COG1646 178 DPVPVEMVSRV 188 (240)
T ss_pred CCcCHHHHHHh
Confidence 5455555554
No 361
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=36.92 E-value=1.6e+02 Score=33.28 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCceEEEEccChhH---HHhhhh--cccccccCCCcccceeEeecC--CCcccccccceeecccccccHHHHhccCCCee
Q psy16953 201 EQTKAIVWGMQTRA---VQSMLD--FDFVCRRSEPSVAAMVYPFTG--DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 201 ~~t~v~V~G~~~r~---~~~ll~--~gf~~~~~~~~~~g~iypvnp--~~~~~~~~g~~~i~~p~y~sv~daip~~~Dla 273 (806)
+..+|+|+|+++-. +-.+++ -.| . .++++.+.. ..++++.|+.+++-+.-. +..+ + ..+|++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f-~-------v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~-~-~~~Div 72 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKF-N-------IAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS-F-EGVDIA 72 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCC-C-------cccEEEEECcccCCCCeeeCCcceEEEeC-CHHH-h-cCCCEE
Confidence 44589999998754 333333 333 0 233444432 234444454333222111 2334 4 456765
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC----------HHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP----------ENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~----------E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
+. +.|..........+.++|++ +|=.|+-|. |-..+.|.. .++ .|-.|||.=
T Consensus 73 f~---a~~~~~s~~~~~~~~~~G~~-VID~Ss~fR~~~~vplvvPEvN~e~i~~---~~~-iIanPnC~t 134 (347)
T PRK06728 73 FF---SAGGEVSRQFVNQAVSSGAI-VIDNTSEYRMAHDVPLVVPEVNAHTLKE---HKG-IIAVPNCSA 134 (347)
T ss_pred EE---CCChHHHHHHHHHHHHCCCE-EEECchhhcCCCCCCeEeCCcCHHHHhc---cCC-EEECCCCHH
Confidence 55 77888777788777667753 343555553 312223332 135 588888843
No 362
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=36.85 E-value=1.7e+02 Score=32.75 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeec--CCCcccccccceeecccccccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFT--GDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvn--p~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
.+|+|+|+++.. ++.|.+.+| | ..++..+. ...++.+.|+..++-+.- .+..+ + ..+|+++.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h------p--~~~l~~l~s~~~~g~~l~~~g~~i~v~d-~~~~~-~-~~vDvVf~- 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF------P--VDKLRLLASARSAGKELSFKGKELKVED-LTTFD-F-SGVDIALF- 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC------C--cceEEEEEccccCCCeeeeCCceeEEee-CCHHH-H-cCCCEEEE-
Confidence 379999999875 555556554 1 12333332 223333334322221110 11123 4 35676544
Q ss_pred eecCChhhHHHHHHHhcCCCC
Q psy16953 277 NFASLRSAYDSTIETLGFPQI 297 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gv 297 (806)
+.|.....+..+...++|+
T Consensus 70 --A~g~g~s~~~~~~~~~~G~ 88 (334)
T PRK14874 70 --SAGGSVSKKYAPKAAAAGA 88 (334)
T ss_pred --CCChHHHHHHHHHHHhCCC
Confidence 7788877888887766776
No 363
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=36.48 E-value=92 Score=34.98 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=30.2
Q ss_pred ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH
Q psy16953 258 VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE 309 (806)
Q Consensus 258 ~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E 309 (806)
.|.++++.....+|++++ +.|.....+.+.++.++|+ .+|=.|+.|.-
T Consensus 57 ~~~~~~~~~~~~vD~Vf~---alP~~~~~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 57 VLEPLDPEILAGADVVFL---ALPHGVSMDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred eeecCCHHHhcCCCEEEE---CCCcHHHHHHHHHHHhCCC-EEEECCcccCC
Confidence 344444311234676655 7788888888888876775 46666777743
No 364
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=36.31 E-value=5e+02 Score=30.00 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=85.0
Q ss_pred hhhHHHHHHH-hcCCCCCEEEEEcCCCCH---HHHHHHHHHHHHcCCeEEccCccccccCCccccccC---CCCcccccc
Q psy16953 282 RSAYDSTIET-LGFPQIRSIAIIAEGIPE---NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNT---GGMMDNILH 354 (806)
Q Consensus 282 ~~~~~~~le~-~~~~gvk~~viis~Gf~E---~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~---~g~~~~~~~ 354 (806)
.+.+...++. +.+..-+.++|+++..+| .+.+.+.+.+++.++.++.=+|.|+-.... -|.- ..+...+.+
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~--~G~~~a~~al~~~~~~ 148 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNY--AGHEIVLKAIIDQYVG 148 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccc--cHHHHHHHHHHHHhcc
Confidence 3444444444 444567888899998888 455555444466788888888888765431 1100 001111222
Q ss_pred cC-CCCCCCEEEEeCC----h---hHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC
Q psy16953 355 SK-LYRPGSVAYVSRS----G---GMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG 426 (806)
Q Consensus 355 ~~-~~~~G~ValvSQS----G---~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig 426 (806)
.. ...++.|-++.-+ . +=..++-..+...|+-+...++.+. ++.| +.+=++-+.-++...
T Consensus 149 ~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~------~~~e----i~~~~~A~~niv~~~-- 216 (427)
T cd01971 149 QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPES------NGEE----LRSIPKAQFNLVLSP-- 216 (427)
T ss_pred CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCC------CHHH----HHhcccCcEEEEEcH--
Confidence 11 1346788888632 1 2236788888887777666654332 3333 455555555544433
Q ss_pred CcchHHHHHHHHhcCCCCCEEEE
Q psy16953 427 GVEEYEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 427 g~~d~~f~~a~r~~~~~KPVV~l 449 (806)
. .-..+.+.+++ +.+.|.+..
T Consensus 217 ~-~g~~~a~~L~~-~~giP~i~~ 237 (427)
T cd01971 217 W-VGLEFAQHLEE-KYGQPYIHS 237 (427)
T ss_pred h-hHHHHHHHHHH-HhCCceEec
Confidence 1 11456666655 468897764
No 365
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=36.14 E-value=68 Score=34.54 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=63.5
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE---------------ccCccccccCC--ccccccCCCCc
Q psy16953 287 STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII---------------GPATVGGLKPG--CFKIGNTGGMM 349 (806)
Q Consensus 287 ~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii---------------GPN~~Gii~p~--~~~ig~~~g~~ 349 (806)
.+.++.. .|..++++|..-...+...++.+.|++.|+..+ |+.-+|+-|-+ .+.+. +.
T Consensus 116 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd----~~ 190 (247)
T PRK13957 116 QIREARA-FGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIH----QN 190 (247)
T ss_pred HHHHHHH-cCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceEC----HH
Confidence 3444444 888999999998888788888888888888766 88888876653 11111 00
Q ss_pred ccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCC
Q psy16953 350 DNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGD 396 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~ 396 (806)
. +......-|..+-+||-||--+.+=+..+.. + ...+=+|..
T Consensus 191 ~-~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~---~-~davLvG~~ 232 (247)
T PRK13957 191 L-VEEVAAFLPPNIVKVGESGIESRSDLDKFRK---L-VDAALIGTY 232 (247)
T ss_pred H-HHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH---h-CCEEEECHH
Confidence 0 0000113467788999999887775555543 2 444555554
No 366
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=36.07 E-value=1.3e+02 Score=37.13 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=62.0
Q ss_pred ceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc--cccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI--PVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~--p~y~sv~daip~~~Dlavivi 277 (806)
.+|.|+|.+.- ..+.+.+.|+ .-.|+-++++...... ..+.+. ....++.++ -+..|+.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~---------~~~V~~~d~~~~~~~~--a~~~g~~~~~~~~~~~~-~~~aDvVil-- 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL---------AREVVAVDRRAKSLEL--AVSLGVIDRGEEDLAEA-VSGADVIVL-- 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC---------CCEEEEEECChhHHHH--HHHCCCCCcccCCHHHH-hcCCCEEEE--
Confidence 57999997642 3667777774 2246666665211000 011222 134456663 345676555
Q ss_pred ecCChhhHHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 278 FASLRSAYDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
++|...+.++++++... .-+.+++..++......+++.+...+..+|++
T Consensus 70 -avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~ 119 (735)
T PRK14806 70 -AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFV 119 (735)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEE
Confidence 66777888888887531 22346666778876555566555433456665
No 367
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=36.04 E-value=90 Score=34.26 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.5
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 125 ~~~kPvIAaV~G~a~G 140 (302)
T PRK08272 125 HAHKPTVAKVHGYCVA 140 (302)
T ss_pred hCCCCEEEEEccEeeh
Confidence 4789999999888774
No 368
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=36.02 E-value=71 Score=34.06 Aligned_cols=83 Identities=19% Similarity=0.139 Sum_probs=45.5
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChh-hHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFD-TLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~-EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++-.--.. -|...+ ......+
T Consensus 91 ~~~kPvIaav~G~a~G-gG~~lala~D~ria~~~a~----f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l-------- 157 (256)
T TIGR02280 91 ALPLPVVCAVNGVAAG-AGANLALACDIVLAAESAR----FIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL-------- 157 (256)
T ss_pred hCCCCEEEEECCeeeh-HHHHHHHhCCEEEecCCCE----EeChhhhcCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999998875 2555555555455555543 33334556764322111 111111 0111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|.+.|++
T Consensus 158 ----~l~g~~~~a~eA~~~Glv 175 (256)
T TIGR02280 158 ----AMLGEKLDARTAASWGLI 175 (256)
T ss_pred ----HHcCCCCCHHHHHHcCCc
Confidence 235567888889999975
No 369
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=35.99 E-value=84 Score=28.85 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giri 326 (806)
...+++++....++ .|++++..+++...++...|+++++.+
T Consensus 21 ~~~v~kai~~gkak-lViiA~D~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 21 SKRTIKAIKLGKAK-LVIVASNCPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred HHHHHHHHHcCCce-EEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 35567777655555 677788899999999999999999986
No 370
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.93 E-value=61 Score=35.54 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=48.5
Q ss_pred ecccccccHHHHhccCCCeeEEEeecC-ChhhHHHHHHHhcCCCCCEEEEEcCC-CCHHHHHHHHHHHHHcCCeEE
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFAS-LRSAYDSTIETLGFPQIRSIAIIAEG-IPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~-~~~~~~~~le~~~~~gvk~~viis~G-f~E~~~~~l~~~a~~~girii 327 (806)
.|+|.|.++++ +|+.+|+|-+||=.. ....=.++-+++-++||. ++.+. .-..+..++++.|++.|-|..
T Consensus 49 ~GVply~~~ee-lpd~idiACVvVrsai~Gg~Gs~larall~RGi~---VlqEHPl~p~di~~l~rlA~rqG~~y~ 120 (361)
T COG4693 49 LGVPLYCEVEE-LPDDIDIACVVVRSAIVGGQGSALARALLARGIH---VLQEHPLHPRDIQDLLRLAERQGRRYL 120 (361)
T ss_pred hCCccccCHhh-CCCCCCeEEEEEeeeeecCCcHHHHHHHHHcccH---HHHhCCCCHHHHHHHHHHHHHhCcEEE
Confidence 47999999999 999999988744221 112234666777667765 44443 223678889999999986653
No 371
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=35.71 E-value=95 Score=29.09 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch--HHHHHHHHhcCCCCCEE
Q psy16953 370 GGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE--YEVCAALKDKRITKPLV 447 (806)
Q Consensus 370 G~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d--~~f~~a~r~~~~~KPVV 447 (806)
|+-..++...+.+.|. .-+ ... +..|.+.++.++++.-+|++..+ +...+ .++++.+++...+.||.
T Consensus 3 ~a~~~~l~~~L~~~~~--~vv-~~~-------~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVF 71 (115)
T PF03709_consen 3 IAASRELAEALEQRGR--EVV-DAD-------STDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVF 71 (115)
T ss_dssp HHHHHHHHHHHHHTTT--EEE-EES-------SHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEE
T ss_pred hHHHHHHHHHHHHCCC--EEE-EeC-------ChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEE
Confidence 3445566666666443 332 222 34599999999999999999987 22222 67899999988999999
Q ss_pred EEEe
Q psy16953 448 AWCI 451 (806)
Q Consensus 448 ~lk~ 451 (806)
++.-
T Consensus 72 l~~~ 75 (115)
T PF03709_consen 72 LLAE 75 (115)
T ss_dssp EEES
T ss_pred EEec
Confidence 9974
No 372
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=35.63 E-value=68 Score=34.41 Aligned_cols=83 Identities=16% Similarity=-0.004 Sum_probs=40.9
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHH-HHHHHHhhhhCCccccC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI-IGSVYKDLVSRGDIVPQ 519 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~-~~all~~L~~~g~i~~~ 519 (806)
...||||+..-|.+-. .|-.-+...-=.++.++.. +..-.-+.|++..--..-+... -......|
T Consensus 98 ~~~kPvIaav~G~a~G-gG~~lala~D~ria~~~a~----f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~l--------- 163 (262)
T PRK07468 98 DLPKPLIGRIQGQAFG-GGVGLISVCDVAIAVSGAR----FGLTETRLGLIPATISPYVVARMGEANARRV--------- 163 (262)
T ss_pred cCCCCEEEEECCEEEh-HHHHHHHhCCEEEEeCCCE----EeCchhccCCCcccchhhHHhhccHHHHHHH---------
Confidence 3789999999888764 1333333332233333322 3333345565422111111110 11111122
Q ss_pred CCCCCCCCcccchHHhhcccc
Q psy16953 520 PELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 520 ~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 164 ---ll~g~~~~a~eA~~~Glv 181 (262)
T PRK07468 164 ---FMSARLFDAEEAVRLGLL 181 (262)
T ss_pred ---HHhCCccCHHHHHHcCCc
Confidence 245678888889999975
No 373
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=35.58 E-value=48 Score=35.39 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=19.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANS 473 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~ 473 (806)
...||||+..-|.+-. .|-.-+...-=.++.+
T Consensus 92 ~~~kpvIaav~G~a~G-gG~~lalacD~~ia~~ 123 (257)
T PRK05862 92 RIRKPVIAAVAGYALG-GGCELAMMCDIIIAAD 123 (257)
T ss_pred hCCCCEEEEEccEEeH-HHHHHHHHCCEEEEeC
Confidence 3789999999998875 2444444333333433
No 374
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=35.55 E-value=1.5e+02 Score=34.44 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATV 332 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~ 332 (806)
..+.+++-|.+.++..+|+..+ ..+...++...++.|+.++||+--
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d---~~l~~~~~~~l~~~Gi~v~gps~~ 98 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPD---PVLATPLVNNLLKRGIKVASPTME 98 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCC---hHHHHHHHHHHHHCCCcEECCCHH
Confidence 5588888898888987776332 234556666667789999999654
No 375
>CHL00194 ycf39 Ycf39; Provisional
Probab=35.31 E-value=2.5e+02 Score=30.53 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=48.9
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCC-ccc--ccccceee-c-ccccccHHHHhccCCCeeE
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDH-KLK--FYWGHKEV-L-IPVYKKMEDAMSKNKDADV 274 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~-~~~--~~~g~~~i-~-~p~y~sv~daip~~~Dlav 274 (806)
+|+|.|.+|.. ++.|++.|| +|.-+..+. +.. ..+|.+.+ + +.-..++.+++. .+|.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-----------~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~-g~d~Vi 69 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-----------QVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK-GVTAII 69 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-----------eEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC-CCCEEE
Confidence 68999998754 678888887 333332110 000 00122222 2 444556777554 356433
Q ss_pred EEeecCCh------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 275 LVNFASLR------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 275 ivi~~~~~------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
.++... .....++++|.+.|++.+|.+|+
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 70 --DASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred --ECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 333211 11246789998899998888776
No 376
>PRK14851 hypothetical protein; Provisional
Probab=35.09 E-value=1.3e+02 Score=37.08 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
++++|+|+|+++ ..+.+|...| .|+++-+..+.-+. +.+....+|.+--.-+++.+. -.|
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~G----------VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP 111 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTG----------IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP 111 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhC----------CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC
Confidence 678999999984 3588888888 57888777653111 112223333221111111111 135
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
++.|..+ +...-++-++++- .++..||--++.|.-.....|.+.|+++++.++--.+.|
T Consensus 112 ~~~I~~~---~~~i~~~n~~~~l-~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 112 FLEITPF---PAGINADNMDAFL-DGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CCeEEEE---ecCCChHHHHHHH-hCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 5555421 2222222333333 355544433333333444567889999999998555444
No 377
>PRK12435 ferrochelatase; Provisional
Probab=34.94 E-value=65 Score=35.81 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.7
Q ss_pred hHHHHHHHhcCC-CCCEEEEEcCCCCH-------HHHHHHHHHHHHcCCeEEccCcc
Q psy16953 284 AYDSTIETLGFP-QIRSIAIIAEGIPE-------NMTRKLNLLAKEKGVSIIGPATV 332 (806)
Q Consensus 284 ~~~~~le~~~~~-gvk~~viis~Gf~E-------~~~~~l~~~a~~~giriiGPN~~ 332 (806)
.++++++++.+. |+|.++|+.-||-- ++-.+.++.|++.|+.+.=+.|+
T Consensus 233 ~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~l 289 (311)
T PRK12435 233 DVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMP 289 (311)
T ss_pred CHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCC
Confidence 466888888766 99999999999954 23356678899999877766664
No 378
>PLN02858 fructose-bisphosphate aldolase
Probab=34.76 E-value=1.1e+02 Score=40.86 Aligned_cols=112 Identities=7% Similarity=0.091 Sum_probs=67.3
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
..++|-++|++. ...++|++.|| .|+..|++.....-| ...+.....|..+ +-+..|+.++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~-----------~V~v~dr~~~~~~~l--~~~Ga~~~~s~~e-~~~~aDvVi~-- 386 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF-----------SVCGYDVYKPTLVRF--ENAGGLAGNSPAE-VAKDVDVLVI-- 386 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHH--HHcCCeecCCHHH-HHhcCCEEEE--
Confidence 347899999773 35789999998 455555542100000 0113344678888 4555666554
Q ss_pred ecCChhhHHHHHHH----hcCCCCCEEEEEcCCCCHHHHHHHHHHHHH--cCCeEEc
Q psy16953 278 FASLRSAYDSTIET----LGFPQIRSIAIIAEGIPENMTRKLNLLAKE--KGVSIIG 328 (806)
Q Consensus 278 ~~~~~~~~~~~le~----~~~~gvk~~viis~Gf~E~~~~~l~~~a~~--~giriiG 328 (806)
+++.+..+.+++.. +....-..++|..+-......+++.+.+++ +|++++=
T Consensus 387 ~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 387 MVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred ecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 56546677777621 221122346666666667777888888887 8888664
No 379
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=34.70 E-value=2.3e+02 Score=26.99 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=61.1
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhcc-CCCee
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMSK-NKDAD 273 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip~-~~Dla 273 (806)
+|+|+|.++ ..+++|...| .|+++.+.++.-+. +++..+.+|.+--..+.+.+.+ .|++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G----------v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~ 70 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG----------VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN 70 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC----------CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence 578999874 3588999998 47888887652100 1111233442222222221221 34444
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
+-.... .......++.- .+.. +||.+..- ......+.++|+++++.++...+.|+
T Consensus 71 i~~~~~---~~~~~~~~~~~-~~~d-iVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g~ 125 (143)
T cd01483 71 VTAVPE---GISEDNLDDFL-DGVD-LVIDAIDN-IAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred EEEEee---ecChhhHHHHh-cCCC-EEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 431111 11111112222 2343 44444443 45677889999999999998888773
No 380
>PLN02921 naphthoate synthase
Probab=34.65 E-value=76 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=20.0
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCC
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSD 474 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~ 474 (806)
..||||+..-|.+-. .|-.-+..+-=.++.++
T Consensus 160 ~~kPvIAaVnG~a~G-GG~~LalacD~riA~~~ 191 (327)
T PLN02921 160 LPKPVIAMVAGYAVG-GGHILHMVCDLTIAADN 191 (327)
T ss_pred CCCCEEEEECCEEec-HHHHHHHhCCEEEEeCC
Confidence 689999999988874 24444444433344333
No 381
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=34.39 E-value=1.1e+02 Score=31.60 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
..+.++.+...|+.++++.... ++... .+++.+++.|+.++-=|+
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~-~~~~~-~~l~~~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVD-PDSLA-PFLEKAKAAGIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSS-TTTTH-HHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHhcCCEEEecCCC-HHHHH-HHHHHHhhcCceEEEEec
Confidence 3455666655666655544322 22222 334445666666665333
No 382
>PRK06524 biotin carboxylase-like protein; Validated
Probab=34.30 E-value=74 Score=37.63 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=45.4
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhcccc--ccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPW--LESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--l~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
.-+-.|+++.+++. |++ +..+. ...+++++.+...- ++ -++||||-. ++-|| ++.+.++.+|.++++
T Consensus 142 DK~~tK~l~~~aGI--Ptp-p~~~~---~~~~~eel~~~~~~~~IG-yPvVVKP~~--GGSS~--GV~~Vkn~eELe~a~ 210 (493)
T PRK06524 142 SKIVTTRLANEAGV--PSV-PHVLG---RVDSYDELSALAHGAGLG-DDLVVQTPY--GDSGS--TTFFVRGQRDWDKYA 210 (493)
T ss_pred CHHHHHHHHHHcCC--CCC-Ccccc---cCCCHHHHHHHHHhccCC-CcEEEEECC--CCCCc--CEEEeCCHHHHHHHH
Confidence 34567888888877 666 44431 13466665543332 55 699999984 33333 366666889988877
Q ss_pred HHHcC
Q psy16953 85 SERMG 89 (806)
Q Consensus 85 ~~~~g 89 (806)
++..+
T Consensus 211 ~~~~~ 215 (493)
T PRK06524 211 GGIVG 215 (493)
T ss_pred HHhcC
Confidence 76543
No 383
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.22 E-value=1.7e+02 Score=31.19 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
.+++|+|+|.++- .+++|...| .|+++.+.++.-+. +++-.+.+|.+--..+.+.+. -.|
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G----------Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG----------VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC----------CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 5678999998853 588999999 68999888763100 011112222111111111111 145
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc-ccCCccccccCCCCc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG-LKPGCFKIGNTGGMM 349 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi-i~p~~~~ig~~~g~~ 349 (806)
++.|- .......++-+++.-..+.. +||.+-.-.+ ....|.++|+++++.++---..|- .+|.+.++
T Consensus 80 ~~~V~---~~~~~i~~~~~~~l~~~~~D-~VvdaiD~~~-~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i------- 147 (231)
T cd00755 80 ECEVD---AVEEFLTPDNSEDLLGGDPD-FVVDAIDSIR-AKVALIAYCRKRKIPVISSMGAGGKLDPTRIRV------- 147 (231)
T ss_pred CcEEE---EeeeecCHhHHHHHhcCCCC-EEEEcCCCHH-HHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEE-------
Confidence 66554 11222222233333334455 4444433323 335688999999999986433332 33443332
Q ss_pred ccccccCCCCCCCEEEEeCCh--hHHHHHHHHHHhcCC--ceeEEEee
Q psy16953 350 DNILHSKLYRPGSVAYVSRSG--GMSNELNNIISKATN--GVYEGVAI 393 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG--~l~~~l~~~~~~~g~--G~s~~vs~ 393 (806)
+=++++- -|+..+-..++++|+ |+.-+-|.
T Consensus 148 --------------~di~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~ 181 (231)
T cd00755 148 --------------ADISKTSGDPLARKVRKRLRKRGIFFGVPVVYST 181 (231)
T ss_pred --------------ccEeccccCcHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 2233332 477778888888887 45555553
No 384
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.14 E-value=1.8e+02 Score=32.06 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=34.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC-C-C-CCEEEEEcCCCCH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF-P-Q-IRSIAIIAEGIPE 309 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~-~-g-vk~~viis~Gf~E 309 (806)
++.+.+..+++.+..|+.++ +++...++++++.+.. . . -..+++++.|+..
T Consensus 58 i~~~~~~~~~~~~~~Dliii---avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 58 ISVKSAIDEVLSDNATCIIL---AVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eEEeCCHHHHHhCCCCEEEE---EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 34666777744456677666 6688889999998763 1 1 1247778889854
No 385
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=34.10 E-value=75 Score=34.73 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh--HHHH-HHHHHHhhhhCCccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT--LGDI-IGSVYKDLVSRGDIV 517 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E--L~~~-~~all~~L~~~g~i~ 517 (806)
+..||||+..-|.+-. .|-+-+...-=.++.++.. +.--.-+.|+. . ..- +... -......+
T Consensus 116 ~~pkPvIAaVnG~a~G-gG~~lalacD~ria~e~a~----f~~pe~~lGl~--~-~~~~~l~~~iG~~~A~~l------- 180 (288)
T PRK08290 116 DLPKPTIAQVQGACIA-GGLMLAWVCDLIVASDDAF----FSDPVVRMGIP--G-VEYFAHPWELGPRKAKEL------- 180 (288)
T ss_pred hCCCCEEEEECCEeeH-HHHHHHHhCCEEEeeCCCE----ecCcccccCcC--c-chHHHHHHHhhHHHHHHH-------
Confidence 4789999999998864 2333333332233333322 22223345652 1 111 1100 01111222
Q ss_pred cCCCCCCCCCcccchHHhhcccc
Q psy16953 518 PQPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 518 ~~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 181 -----lltG~~i~A~eA~~~GLV 198 (288)
T PRK08290 181 -----LFTGDRLTADEAHRLGMV 198 (288)
T ss_pred -----HHcCCCCCHHHHHHCCCc
Confidence 235568888999999986
No 386
>PRK12999 pyruvate carboxylase; Reviewed
Probab=34.03 E-value=64 Score=42.17 Aligned_cols=67 Identities=6% Similarity=-0.052 Sum_probs=46.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|+++.+++. |++ |... ...+|++++.+...-++ .++||||-.--|+|| +.+..+.+|+++++++
T Consensus 121 ~~~r~~l~~~GV--Pv~-P~~~---~~v~s~eea~~~a~~iG-yPvVVKP~~GgGGrG----v~vV~~~eEL~~a~~~ 187 (1146)
T PRK12999 121 VAARNAAIKAGV--PVI-PGSE---GPIDDIEEALEFAEEIG-YPIMLKASAGGGGRG----MRIVRSEEELEEAFER 187 (1146)
T ss_pred HHHHHHHHHCCC--CCC-CCcc---cCCCCHHHHHHHHHHhC-CCEEEEECCCCCCCC----eEEeCCHHHHHHHHHH
Confidence 456677777766 543 3221 02568888887777776 799999987666553 5666788999887775
No 387
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=33.98 E-value=54 Score=34.56 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=40.2
Q ss_pred cccccCCCeEEccCccccccCccCceeecCCH-HHHHHHHHHHcCC--ee-------------------EEEEEeccccc
Q psy16953 46 EPWLESSKLVAKPDQLIKRRGKLGLIKVNTDF-KGAQSWISERMGK--DQ-------------------VVLITGGGIAN 103 (806)
Q Consensus 46 ~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~-~e~~~~~~~~~g~--~i-------------------~~~~i~GGI~~ 103 (806)
..||.. ..|||++==||.-=-. .+.+| .+--+-+++...+ .+ ++.+++++|++
T Consensus 123 ~~~l~~----~gvd~~~~H~g~D~q~-~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~ 197 (217)
T COG0269 123 AKWLKE----LGVDQVILHRGRDAQA-AGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITG 197 (217)
T ss_pred HHHHHH----hCCCEEEEEecccHhh-cCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcC
Confidence 446653 7788888777754322 34444 3333344444432 22 78889999999
Q ss_pred hhhhhhhhhHHHHHH
Q psy16953 104 FTNVAATFKGIVTAL 118 (806)
Q Consensus 104 ~~~vA~~~~gii~al 118 (806)
..+++++.+-+.+.+
T Consensus 198 a~dp~~~a~~~~~~i 212 (217)
T COG0269 198 AKDPAEAARKFKEEI 212 (217)
T ss_pred CCCHHHHHHHHHHHH
Confidence 998886444444444
No 388
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=33.84 E-value=3.6e+02 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
....++.+...++.++|+.+.. .+. ..+.++.+++.|+.++.-|+
T Consensus 49 ~~~~~~~~~~~~vdgiIi~~~~-~~~-~~~~l~~~~~~~iPvv~~~~ 93 (272)
T cd06300 49 QIADIRNLIAQGVDAIIINPAS-PTA-LNPVIEEACEAGIPVVSFDG 93 (272)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC-hhh-hHHHHHHHHHCCCeEEEEec
Confidence 3456666655678877775532 121 12344556677888877654
No 389
>PRK06349 homoserine dehydrogenase; Provisional
Probab=33.77 E-value=73 Score=36.90 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=45.5
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
...|.+.++ +-..+|+++++..+.+.......+++|-++|. .+|+---..--..-++|.++|+++|+.+.=-.++|--
T Consensus 58 ~~~~~d~~~-ll~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 58 ILLTTDPEE-LVNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred cceeCCHHH-HhhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 467888999 44555566665554433333344444444774 4443211111145689999999999987644444444
Q ss_pred cC
Q psy16953 336 KP 337 (806)
Q Consensus 336 ~p 337 (806)
.|
T Consensus 136 iP 137 (426)
T PRK06349 136 IP 137 (426)
T ss_pred Cc
Confidence 44
No 390
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.70 E-value=1.5e+02 Score=32.49 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=46.4
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
..+|.|+|.+. ...++|.+.|| +|+-.+.+. -.++++++ +..|+.++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-----------~V~~~~r~~---------------~~~~~~~~-~~advvi~--- 53 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-----------RVRVWSRRS---------------GLSLAAVL-ADADVIVS--- 53 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-----------EEEEEeCCC---------------CCCHHHHH-hcCCEEEE---
Confidence 45799999773 34667778887 566555541 14677743 44565544
Q ss_pred cCChhhHHHHHHHhcCCCC--CE-EEEEcCCCCH
Q psy16953 279 ASLRSAYDSTIETLGFPQI--RS-IAIIAEGIPE 309 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~~gv--k~-~viis~Gf~E 309 (806)
+.|...+.++++.+....+ .. ++..+.|+.+
T Consensus 54 ~vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 54 AVSMKGVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred ECChHHHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 5566788888887742111 22 3333446655
No 391
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.66 E-value=55 Score=36.30 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=52.2
Q ss_pred CCceEEEEccCh--hH-HHhhhhcccccccCCCcccceeEeecCCCccccccc-ceeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQT--RA-VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWG-HKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~--r~-~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g-~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
+..+|+|+|.+. ++ ..||.|+|. +| ++-+.++. ..|- .++-|..+| +++||++. -|+.++
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGl-------nV---iiGlr~g~---~s~~kA~~dGf~V~-~v~ea~k~-ADvim~- 80 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL-------NV---IIGLRKGS---SSWKKAKEDGFKVY-TVEEAAKR-ADVVMI- 80 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCC-------cE---EEEecCCc---hhHHHHHhcCCEee-cHHHHhhc-CCEEEE-
Confidence 455889998654 43 789999996 23 33333321 1121 122357766 47886554 466555
Q ss_pred eecCChhhHHHHHHHhcC--CCCCEEEEEcCCCCH
Q psy16953 277 NFASLRSAYDSTIETLGF--PQIRSIAIIAEGIPE 309 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~--~gvk~~viis~Gf~E 309 (806)
..|...-.++.+.-.+ ..-..++.++-||.-
T Consensus 81 --L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNi 113 (338)
T COG0059 81 --LLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNI 113 (338)
T ss_pred --eCchhhHHHHHHHHhhhhhcCCceEEeccccce
Confidence 5576666666663221 122348888888853
No 392
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=33.35 E-value=99 Score=27.59 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
...+++++....++ .|++++..+++..+.+...|+.+++.++=..
T Consensus 13 ~~~vlkaIk~gkak-LViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 13 AKQTLKAITNCNVL-QVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred hHHHHHHHHcCCee-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 35567777644555 7778999999999999999999999986443
No 393
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.35 E-value=1.4e+02 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=25.0
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
...|+++. +.|.....+..+.+.++|++ +|=.|+-|
T Consensus 65 ~~~Dvvf~---a~~~~~~~~~~~~~~~~g~~-ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFL---ALPHGASKELAPKLLKAGIK-VIDLSGDF 100 (121)
T ss_dssp TTESEEEE----SCHHHHHHHHHHHHHTTSE-EEESSSTT
T ss_pred hcCCEEEe---cCchhHHHHHHHHHhhCCcE-EEeCCHHH
Confidence 45666555 88888888888888879984 44455555
No 394
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=33.33 E-value=1.5e+02 Score=31.59 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=43.7
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +.--.-+.|++-.-.. .-|...+- .....+
T Consensus 90 ~~~kPvIAav~G~a~G-gG~~lal~cD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l-------- 156 (255)
T PRK06563 90 RLSKPLVVAVQGYCLT-LGIELMLAADIVVAADNTR----FAQLEVQRGILPFGGATLRFPQAAGWGNAMRY-------- 156 (255)
T ss_pred cCCCCEEEEEcCeeec-HHHHHHHhCCEEEecCCCE----EeChhhhcCCCCCccHHHHHHHHhhHHHHHHH--------
Confidence 3689999999998875 2445455444444444432 3333456676521111 11111110 001112
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=...-+++..+|++.|++
T Consensus 157 ----~ltg~~~~a~eA~~~Glv 174 (255)
T PRK06563 157 ----LLTGDEFDAQEALRLGLV 174 (255)
T ss_pred ----HHcCCCcCHHHHHHcCCC
Confidence 135557888889999986
No 395
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=33.09 E-value=6.1e+02 Score=27.06 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=45.8
Q ss_pred CEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHH
Q psy16953 362 SVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
+|++++.....+.... ..+.+.|+-+......... +.++...+..+.+ ....+|++... +..-..|++++
T Consensus 135 ~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~---~~d~~~~~~~l~~-~~pdaIi~~~~--~~~~~~~~~~l 208 (312)
T cd06333 135 TVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRT---DTSVTAQLLKIRA-ARPDAVLIWGS--GTPAALPAKNL 208 (312)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCC---CcCHHHHHHHHHh-CCCCEEEEecC--CcHHHHHHHHH
Confidence 8999988766555443 4445556555433333212 2345555554432 23467776654 22225688888
Q ss_pred HhcCCCCCEEE
Q psy16953 438 KDKRITKPLVA 448 (806)
Q Consensus 438 r~~~~~KPVV~ 448 (806)
++...+-|++.
T Consensus 209 ~~~g~~~p~~~ 219 (312)
T cd06333 209 RERGYKGPIYQ 219 (312)
T ss_pred HHcCCCCCEEe
Confidence 88766677664
No 396
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=32.95 E-value=64 Score=28.45 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=44.5
Q ss_pred eEEEEccChh---HHHhhhhcccccccCCCcccceeEee-cCCCcccc-cccceeecccccc-cHHHHhccCCCeeEEEe
Q psy16953 204 KAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPF-TGDHKLKF-YWGHKEVLIPVYK-KMEDAMSKNKDADVLVN 277 (806)
Q Consensus 204 ~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypv-np~~~~~~-~~g~~~i~~p~y~-sv~daip~~~Dlavivi 277 (806)
||.++|.+.- .++.|++.|+ ...+|+-+ +++. ++. .| .++.+..++. +..|++. ..|+.++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~--------~~~~v~~~~~r~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~advvil-- 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI--------KPHEVIIVSSRSP-EKAAEL-AKEYGVQATADDNEEAAQ-EADVVIL-- 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS---------GGEEEEEEESSH-HHHHHH-HHHCTTEEESEEHHHHHH-HTSEEEE--
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--------CceeEEeeccCcH-HHHHHH-HHhhccccccCChHHhhc-cCCEEEE--
Confidence 5778887754 4788888884 14577756 4432 111 00 0122344555 7888555 5677666
Q ss_pred ecCChhhHHHHHHHh
Q psy16953 278 FASLRSAYDSTIETL 292 (806)
Q Consensus 278 ~~~~~~~~~~~le~~ 292 (806)
++++..++++++++
T Consensus 68 -av~p~~~~~v~~~i 81 (96)
T PF03807_consen 68 -AVKPQQLPEVLSEI 81 (96)
T ss_dssp --S-GGGHHHHHHHH
T ss_pred -EECHHHHHHHHHHH
Confidence 67888899999887
No 397
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=32.82 E-value=1.1e+02 Score=34.51 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=43.3
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+.-..++.+++.+. |+ +|+++ ++..-..++++|.+.|+..+= ..+....+.++.+.|++.|+.++
T Consensus 55 ~~~~~~l~~~~~~~-dv--Vin~~-gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l 119 (386)
T PF03435_consen 55 VNDPESLAELLRGC-DV--VINCA-GPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTAL 119 (386)
T ss_dssp TTTHHHHHHHHTTS-SE--EEE-S-SGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHhcC-CE--EEECC-ccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEE
Confidence 44455677754444 55 44445 555778999999999998655 33345677788889999998776
No 398
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.45 E-value=1.8e+02 Score=34.22 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred ecCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhc
Q psy16953 73 VNTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152 (806)
Q Consensus 73 l~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g 152 (806)
.+.+++.+++.++.. + ++.+|+||+.+-.+.. .+++.++++ -..+++ -|.+.+.=.+.|.+.+
T Consensus 335 ~AhNp~s~~aal~~~---~-~iilI~GG~~k~~d~~----~l~~~l~~~-------~~~vi~--iG~~~~~i~~~l~~~~ 397 (488)
T PRK03369 335 KATNPHAARASILAY---P-RVVWIAGGLLKGASVD----ALVAEMASR-------LVGAVL--IGRDRAVVAEALSRHA 397 (488)
T ss_pred CCCCHHHHHHHHHhC---C-CeEEEecCcCCCCCHH----HHHHHHhhh-------eeEEEE--EcCCHHHHHHHHHhcC
Confidence 356789999988754 2 5889999999866655 577777662 222343 5766555555555431
Q ss_pred ccCCccEEEeCC-----------------------------cchHHHHHHHHhcCC
Q psy16953 153 KTLGIPLFVFGP-----------------------------ETHMTAIVGMALGKK 179 (806)
Q Consensus 153 ~~~g~~i~~~~~-----------------------------~~~m~~~~~~a~~~~ 179 (806)
.++|+..+.+ |.+|++||++|.+.-
T Consensus 398 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a 451 (488)
T PRK03369 398 --PDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLA 451 (488)
T ss_pred --CCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHHHHhC
Confidence 2467776641 125999999999754
No 399
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.01 E-value=1.2e+02 Score=26.92 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
..++++++.+..+ ..|++++..++...+.+...|+++++.++
T Consensus 16 ~~~v~kai~~gka-klViiA~D~~~~~~~~i~~~c~~~~Vp~~ 57 (82)
T PRK13602 16 TKQTVKALKRGSV-KEVVVAEDADPRLTEKVEALANEKGVPVS 57 (82)
T ss_pred HHHHHHHHHcCCe-eEEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 4567777774444 47788999999999999999999999884
No 400
>PRK07877 hypothetical protein; Provisional
Probab=31.91 E-value=3.7e+02 Score=33.52 Aligned_cols=176 Identities=8% Similarity=0.003 Sum_probs=99.2
Q ss_pred CceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccc----------cC--
Q psy16953 129 KISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGKKEIPSETSADGATANF----------LL-- 196 (806)
Q Consensus 129 ~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~-- 196 (806)
-.|++.+..-++-...+.-|++-. + |.+++. +.+=.+...+.++-++..+.+..+.-+ ++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~---~--~~~~d~---~~~~~~~l~~~~~~~~~~~~~~~~~w~~~pw~~~~v~~~~~ 82 (722)
T PRK07877 11 YRAVVLDEDDPADRLVLARLRADP---G--IEFVDR---IDEQLAELRRLRPPPDPELLAEPGRWVYYPWRRTVVHLLGP 82 (722)
T ss_pred cCceecCCCCHHHHHHHHHHhcCC---C--eEEeec---HHHHHHHHHhccCCCCCcccccCCcEEEecchhheeecCCH
Confidence 467888888777777777777642 2 889999 999999999998877554433111100 00
Q ss_pred ------------CCCC-------CCceEEEEccC--hhHHHhhhhcccccccCCCcccceeEeecCCCccc-----cccc
Q psy16953 197 ------------PGGQ-------EQTKAIVWGMQ--TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK-----FYWG 250 (806)
Q Consensus 197 ------------~~~~-------~~t~v~V~G~~--~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~-----~~~g 250 (806)
..|. .+++|+|+|++ +....+|...|. .|+|+-|-.+.-+. ..+.
T Consensus 83 ~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~GlGs~~a~~LaraGv---------vG~l~lvD~D~ve~sNLnRq~~~ 153 (722)
T PRK07877 83 REFRAVRLDRNRNKITAEEQERLGRLRIGVVGLSVGHAIAHTLAAEGL---------CGELRLADFDTLELSNLNRVPAG 153 (722)
T ss_pred HHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEecHHHHHHHHHHHccC---------CCeEEEEcCCEEcccccccccCC
Confidence 0121 78899999985 223667777772 37888777652100 0111
Q ss_pred ceeecccccccHHHHhc-cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 251 HKEVLIPVYKKMEDAMS-KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 251 ~~~i~~p~y~sv~daip-~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
...+|.+--...++-+. -.|++.|. +.+...-++.++++- .++..++--+..|.. -..|.+.|.++|+.+|
T Consensus 154 ~~diG~~Kv~~a~~~l~~inp~i~v~---~~~~~i~~~n~~~~l-~~~DlVvD~~D~~~~--R~~ln~~a~~~~iP~i 225 (722)
T PRK07877 154 VFDLGVNKAVVAARRIAELDPYLPVE---VFTDGLTEDNVDAFL-DGLDVVVEECDSLDV--KVLLREAARARRIPVL 225 (722)
T ss_pred hhhcccHHHHHHHHHHHHHCCCCEEE---EEeccCCHHHHHHHh-cCCCEEEECCCCHHH--HHHHHHHHHHcCCCEE
Confidence 12233111111111111 13555555 223323344455554 456766666666632 2356688999998765
No 401
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=31.82 E-value=80 Score=34.22 Aligned_cols=46 Identities=20% Similarity=0.064 Sum_probs=25.2
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcc
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHV 492 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~ 492 (806)
..||||+..-|.+-. .|-.-+...-=.++.++.. +.--.-+.|++.
T Consensus 103 ~~kPvIAav~G~a~G-gG~~lal~cD~~ia~~~a~----f~~pe~~~Gl~p 148 (275)
T PRK09120 103 YQKPTIAMVNGWCFG-GGFSPLVACDLAIAADEAQ----FGLSEINWGIPP 148 (275)
T ss_pred CCCCEEEEEcCEEec-hhHHHHHhCCEEEEeCCcE----ecCCccccCCCC
Confidence 789999999888775 2444333333333433332 333334556653
No 402
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.79 E-value=1.7e+02 Score=27.65 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=51.9
Q ss_pred CEEEEeCChhHHHHHHHHHHh-cCCceeEEEeecCCCCCCCCHHHH-------------HHHhhcCCCccEEEEEEccCC
Q psy16953 362 SVAYVSRSGGMSNELNNIISK-ATNGVYEGVAIGGDRYPGTTFMDH-------------ILRYQADPEVKMIVLLGEVGG 427 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~-~g~G~s~~vs~Gn~~~~d~~~~D~-------------l~~l~~Dp~Tk~I~ly~Eigg 427 (806)
+|+++.-||-||..+...+.+ .++-+.-.+...++.+.+-+..|+ ++-+.++++ +++-|- .
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~D--VvIDfT---~ 76 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEAD--VVIDFT---N 76 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-S--EEEEES----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCC--EEEEcC---C
Confidence 488999999999999999888 678888888888743444444332 233333333 333322 1
Q ss_pred cch-HHHHHHHHhcCCCCCEEEEEeCcCc
Q psy16953 428 VEE-YEVCAALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 428 ~~d-~~f~~a~r~~~~~KPVV~lk~Grs~ 455 (806)
... .+.++.+.+ .++|+|+--+|-++
T Consensus 77 p~~~~~~~~~~~~--~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 77 PDAVYDNLEYALK--HGVPLVIGTTGFSD 103 (124)
T ss_dssp HHHHHHHHHHHHH--HT-EEEEE-SSSHH
T ss_pred hHHhHHHHHHHHh--CCCCEEEECCCCCH
Confidence 222 444444443 58999986666554
No 403
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=31.71 E-value=5.2e+02 Score=29.35 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHh-cCCCCCEEEEEcCCCCH---HHHHHHHHH-HHHcCCeEEccCccccccCCccccccCCCCc------
Q psy16953 281 LRSAYDSTIETL-GFPQIRSIAIIAEGIPE---NMTRKLNLL-AKEKGVSIIGPATVGGLKPGCFKIGNTGGMM------ 349 (806)
Q Consensus 281 ~~~~~~~~le~~-~~~gvk~~viis~Gf~E---~~~~~l~~~-a~~~giriiGPN~~Gii~p~~~~ig~~~g~~------ 349 (806)
..+.+.++++++ ....-+.++|+++..+| .+.+.+.+. -++.+++++--+|.|+..... . .|..
T Consensus 71 g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~-~----~G~~~a~~al 145 (406)
T cd01967 71 GEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQ-S----LGHHIANDAI 145 (406)
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcc-c----HHHHHHHHHH
Confidence 355555555554 44467889999999988 444444333 335689999999999876221 0 1211
Q ss_pred -cccccc---CCCCCCCEEEEeCCh--hHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEE-E
Q psy16953 350 -DNILHS---KLYRPGSVAYVSRSG--GMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVL-L 422 (806)
Q Consensus 350 -~~~~~~---~~~~~G~ValvSQSG--~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~l-y 422 (806)
..+.+. ....++.|-++.-.- +=..++-..+.+.|+.+...++-|. ++.| +.+-++.++-++ +
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~------~~~~----i~~~~~A~~niv~~ 215 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDG------TVDE----LRRAHRAKLNLVHC 215 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCC------CHHH----HhhCccCCEEEEEC
Confidence 111111 113467788887642 2336777888887777766554333 3444 455677775554 3
Q ss_pred EccCCcchHHHHHHHHhcCCCCCEEE
Q psy16953 423 GEVGGVEEYEVCAALKDKRITKPLVA 448 (806)
Q Consensus 423 ~Eigg~~d~~f~~a~r~~~~~KPVV~ 448 (806)
-+ .-...++.+++ +.+.|.+.
T Consensus 216 ~~----~~~~~a~~L~~-r~GiP~~~ 236 (406)
T cd01967 216 SR----SMNYLAREMEE-RYGIPYME 236 (406)
T ss_pred hH----HHHHHHHHHHH-hhCCCEEE
Confidence 33 11455666654 37899874
No 404
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=30.92 E-value=1.2e+02 Score=29.78 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
+.+.|+++..| +.|.+|+. .||.-. ..+.+.++. .+|||+++..|.+..
T Consensus 20 ~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~--~~~pvi~~v~g~a~s 71 (160)
T cd07016 20 FKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKR--HKGKVTVKIDGLAAS 71 (160)
T ss_pred HHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHh--cCCCEEEEEcchHHh
Confidence 44444444444 89999999 555544 556666665 579999999886553
No 405
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.74 E-value=5.5e+02 Score=27.81 Aligned_cols=170 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc----ccCCcccccc
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG----LKPGCFKIGN 344 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi----i~p~~~~ig~ 344 (806)
++++.+..--..|..+...+-+-..+.+|..++ +++.-.....+..++++.++.+++|.+..- .+|..|++..
T Consensus 39 ~ielv~~D~~~~p~~a~~~a~~li~~~~v~aii---G~~~s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~fr~~~ 115 (332)
T cd06344 39 LLKVVIANDGNDPEIAKKVADELVKDPEILGVV---GHYSSDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFFRTVP 115 (332)
T ss_pred eEEEEEECCCCChHHHHHHHHHHhcccCceEEE---cCCCcHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEEEeCC
Q ss_pred CCCCcccccccCCCCCC---CEEEEeCChh-HHHHHHHHHHhc-----CCceeEEEeecCCCCCCCCHHHHHHHhhcCCC
Q psy16953 345 TGGMMDNILHSKLYRPG---SVAYVSRSGG-MSNELNNIISKA-----TNGVYEGVAIGGDRYPGTTFMDHILRYQADPE 415 (806)
Q Consensus 345 ~~g~~~~~~~~~~~~~G---~ValvSQSG~-l~~~l~~~~~~~-----g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~ 415 (806)
+...............| +|+++.+++. .+..+.+..... |.-+......+.. +.++...+..+.+ .+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~v~~i~~-~~ 191 (332)
T cd06344 116 SNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLSSP---DFNANTAVSQAIN-NG 191 (332)
T ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCCeeeeeccCCCC---CCCHHHHHHHHHh-cC
Q ss_pred ccEEEEEEccCCcch-HHHHHHHHhcCCCCCEEE
Q psy16953 416 VKMIVLLGEVGGVEE-YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 416 Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~ 448 (806)
.++|++... +. + ..|++.+++.....|++.
T Consensus 192 ~d~v~~~~~--~~-~~~~~~~~~~~~~~~~~i~~ 222 (332)
T cd06344 192 ATVLVLFPD--TD-TLDKALEVAKANKGRLTLLG 222 (332)
T ss_pred CCEEEEeCC--hh-HHHHHHHHHHhcCCCceEEe
No 406
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.61 E-value=1.3e+02 Score=34.92 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred eEEEEc-cC---hhHHHhhhhcccccccCCCcccceeEeecCCCcc--cccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 204 KAIVWG-MQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL--KFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 204 ~v~V~G-~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~--~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+|.|+| .+ ....+.|.+.|+ .|+-++++... +. ..+.++.+..+..++ -...|+.++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-----------~V~v~~r~~~~~~~~---a~~~gv~~~~~~~e~-~~~aDvVIl-- 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-----------EVIVTGRDPKKGKEV---AKELGVEYANDNIDA-AKDADIVII-- 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-----------EEEEEECChHHHHHH---HHHcCCeeccCHHHH-hccCCEEEE--
Confidence 578887 33 234567777775 34333332110 00 012345555677774 344576555
Q ss_pred ecCChhhHHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 278 FASLRSAYDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
++|.....++++++... .-..+++-.+.......+.+.+.. ..+.+++|-
T Consensus 65 -avp~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~ 115 (437)
T PRK08655 65 -SVPINVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPT 115 (437)
T ss_pred -ecCHHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEc
Confidence 56767778888887532 223345544555554555555443 235666664
No 407
>KOG3505|consensus
Probab=30.48 E-value=56 Score=26.62 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc
Q psy16953 375 ELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE 424 (806)
Q Consensus 375 ~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E 424 (806)
.++..++.+|.||++..|.-.- .+.|.+..-||-++-=+++-|
T Consensus 9 ~lirlvStAgtGf~~~~s~~k~-------~~klt~~kYDPvVkr~VLF~E 51 (55)
T KOG3505|consen 9 MLIRLVSTAGTGFFYVKSRKKL-------AEKLTFRKYDPVVKRHVLFTE 51 (55)
T ss_pred hHHHHHHhcccceEEEEecccc-------cccceeeecCchheeeeeeeh
Confidence 4566778899999999987554 367788889999999999888
No 408
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.46 E-value=5.8e+02 Score=27.94 Aligned_cols=171 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc-----cccCCccccc
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG-----GLKPGCFKIG 343 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G-----ii~p~~~~ig 343 (806)
.+++.+...-..|..+...+-+-..+.+|..++-..+.- .... ..++++.++.++.|.+.. -.++..|+.+
T Consensus 44 ~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~---~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~~fr~~ 119 (347)
T cd06336 44 KVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIGGG---ITAA-QQITERNKVLLLTAYSSDLSIDTAGNPLTFRVP 119 (347)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCCCc---hhhh-hhhhhhcCceEEeccCCcccccccCCceEEEec
Q ss_pred cCCCCcccccccCCC--CCCCEEEEeCChhHHHH----HHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCcc
Q psy16953 344 NTGGMMDNILHSKLY--RPGSVAYVSRSGGMSNE----LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVK 417 (806)
Q Consensus 344 ~~~g~~~~~~~~~~~--~~G~ValvSQSG~l~~~----l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk 417 (806)
.+........-.... ...+|+++......+.. +...+.+.|.-+......=.. +.|+...+..+. +.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~---~~D~s~~i~~i~-~~~~d 195 (347)
T cd06336 120 PIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPG---TTDFSPIVTKLL-AEKPD 195 (347)
T ss_pred CCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCC---CcchHHHHHHHH-hcCCC
Q ss_pred EEEEEEccCCcch-HHHHHHHHhcCCCCCEEEE
Q psy16953 418 MIVLLGEVGGVEE-YEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 418 ~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~l 449 (806)
+|++..- +..+ ..|++.+++...+.|++.+
T Consensus 196 ~v~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~ 226 (347)
T cd06336 196 VIFLGGP--SPAPAALVIKQARELGFKGGFLSC 226 (347)
T ss_pred EEEEcCC--CchHHHHHHHHHHHcCCCccEEec
No 409
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.40 E-value=84 Score=30.46 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCEEEEEcC---CC--------------CHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 286 DSTIETLGFPQIRSIAIIAE---GI--------------PENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~---Gf--------------~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
+..++.+.+.++.+++|++. |+ ...+..++++.|++.|||++.==|.+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 34555566677888888774 21 22567899999999999999876665
No 410
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=30.32 E-value=6.1e+02 Score=25.98 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=78.2
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc--c----cCCccccccCCCC----ccccc
Q psy16953 285 YDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG--L----KPGCFKIGNTGGM----MDNIL 353 (806)
Q Consensus 285 ~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi--i----~p~~~~ig~~~g~----~~~~~ 353 (806)
....++.+... +|..++ .....+ ....+.+++++.++.++.+++..- . .|..++++..... ...+.
T Consensus 55 ~~~~~~~l~~~~~v~~ii--g~~~~~-~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (299)
T cd04509 55 ALAAARRLCQQEGVDALV--GPVSSG-VALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYI 131 (299)
T ss_pred HHHHHHHHhcccCceEEE--cCCCcH-HHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHH
Confidence 33445554445 787543 222222 334567788889999999876432 1 1222222200000 00000
Q ss_pred ccCCCCCCCEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 354 HSKLYRPGSVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 354 ~~~~~~~G~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
. .....+|+++......+.... ..+.+.|+-+......-.. ..++.+.+..+.+. ..++|+++.- + .
T Consensus 132 ~--~~~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~---~~~~~~~~~~l~~~-~~~~v~~~~~--~-~ 202 (299)
T cd04509 132 K--EYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLG---TTDFTSLLQKLKAA-KPDVIVLCGS--G-E 202 (299)
T ss_pred H--HcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCC---CccHHHHHHHHHhc-CCCEEEEccc--c-h
Confidence 0 123457999987666544433 3344555444333222221 24677788777643 2567766554 2 4
Q ss_pred h-HHHHHHHHhcCC--CCCEEEE
Q psy16953 430 E-YEVCAALKDKRI--TKPLVAW 449 (806)
Q Consensus 430 d-~~f~~a~r~~~~--~KPVV~l 449 (806)
+ ..|++++++... +.+++..
T Consensus 203 ~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 203 DAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHHHHHHHHHcCCCCCCcEEec
Confidence 5 788888888654 3455543
No 411
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=30.05 E-value=1.5e+02 Score=34.05 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=48.0
Q ss_pred ccccccHHHHhccCCCeeEEEeecCCh---hh-HHHHHHHhcCCCCCEEEEEcC----C--CCHHHHHHHHHHHHHcCCe
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLR---SA-YDSTIETLGFPQIRSIAIIAE----G--IPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~---~~-~~~~le~~~~~gvk~~viis~----G--f~E~~~~~l~~~a~~~gir 325 (806)
-|.|++... +..-....++.+...+. .. -.+.+++......|.+++.+. | ++++..++|.++|+++++.
T Consensus 120 ~P~Y~~y~~-~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ 198 (393)
T COG0436 120 DPGYPSYEA-AVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDII 198 (393)
T ss_pred CCCCcCHHH-HHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeE
Confidence 777887777 45545555553222111 11 134566655568998887764 3 3558889999999999999
Q ss_pred EEccCc
Q psy16953 326 IIGPAT 331 (806)
Q Consensus 326 iiGPN~ 331 (806)
||==.+
T Consensus 199 ii~DEi 204 (393)
T COG0436 199 IISDEI 204 (393)
T ss_pred EEEehh
Confidence 884443
No 412
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.02 E-value=7.1e+02 Score=26.58 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEE
Q psy16953 112 KGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFV 161 (806)
Q Consensus 112 ~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~ 161 (806)
+|+..|+++....+...++.++++=.+.+.++.++..+++-++-++...+
T Consensus 21 ~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~ii 70 (333)
T cd06332 21 DGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVV 70 (333)
T ss_pred HHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 47777777743223345677888888888888888887775554665543
No 413
>PRK08462 biotin carboxylase; Validated
Probab=29.96 E-value=2.4e+02 Score=32.56 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCC-CHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGI-PENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf-~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.+.+++.|.+.++..++. ..|| +|. ..+.+.+++.|++++||+.-.+-
T Consensus 65 ~~~l~~~~~~~~~D~i~p-g~g~lse~--~~~a~~~e~~Gi~~~g~~~~~~~ 113 (445)
T PRK08462 65 IPAIISAAEIFEADAIFP-GYGFLSEN--QNFVEICSHHNIKFIGPSVEVMA 113 (445)
T ss_pred HHHHHHHHHHcCCCEEEE-CCCccccC--HHHHHHHHHCCCeEECcCHHHHH
Confidence 578999999999986665 4455 443 44666788899999999865443
No 414
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=29.89 E-value=3.4e+02 Score=29.80 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=78.3
Q ss_pred ceeEeecCCCcccccccceeecccccccHHHHhcc----CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH
Q psy16953 234 AMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK----NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE 309 (806)
Q Consensus 234 g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~----~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E 309 (806)
|-+.|.++.. ...|.+....+.-|+.+ ++++.+...-. |..+ ..+.+.+...+|.. |+.. +..
T Consensus 3 G~l~plsG~~--------a~~g~~~~~g~~lA~~~inG~~i~l~~~D~~~-~~~a-~~~~~~li~~~V~~--iiG~-~~s 69 (336)
T cd06339 3 ALLLPLSGPL--------ASVGQAIRNGFLAALYDLNGASIELRVYDTAG-AAGA-AAAARQAVAEGADI--IVGP-LLK 69 (336)
T ss_pred EEEEcCCCcc--------hHHHHHHHHHHHHHHHhccCCCceEEEEeCCC-cccH-HHHHHHHHHcCCCE--EEcc-CCH
Confidence 5667776542 23445555666655554 34554442222 3333 33444454457763 3332 222
Q ss_pred HHHHHHHHHHHHcCCeEEccCccccc--cCCccccccCCCCc----ccccccCCCCCCCEEEEeCChhHHHHHH----HH
Q psy16953 310 NMTRKLNLLAKEKGVSIIGPATVGGL--KPGCFKIGNTGGMM----DNILHSKLYRPGSVAYVSRSGGMSNELN----NI 379 (806)
Q Consensus 310 ~~~~~l~~~a~~~giriiGPN~~Gii--~p~~~~ig~~~g~~----~~~~~~~~~~~G~ValvSQSG~l~~~l~----~~ 379 (806)
.....+...+++.++.++.|+..--. .+..++++...... ..+.- ....-+|+++......+..+. ..
T Consensus 70 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~g~k~vaii~~~~~~g~~~~~~f~~~ 147 (336)
T cd06339 70 ENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYAR--SQGKRRPLVLAPDGAYGQRVADAFRQA 147 (336)
T ss_pred HHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHH--hcCccceEEEecCChHHHHHHHHHHHH
Confidence 23345557788899999988653321 22222322100000 00000 012347999976665555544 34
Q ss_pred HHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc
Q psy16953 380 ISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA 412 (806)
Q Consensus 380 ~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~ 412 (806)
+.+.|.-+....+.-. ...++...+.-+.+
T Consensus 148 ~~~~G~~vv~~~~~~~---~~~d~~~~i~~i~~ 177 (336)
T cd06339 148 WQQLGGTVVAIESYDP---SPTDLSDAIRRLLG 177 (336)
T ss_pred HHHcCCceeeeEecCC---CHHHHHHHHHHHhc
Confidence 4555654443333321 35577888877766
No 415
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=29.83 E-value=5.8e+02 Score=29.17 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCCCCEEEEeCChhHHHH----HHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 358 YRPGSVAYVSRSGGMSNE----LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~----l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
+..-.|++|.++...+.. +...+.+.|+-+.....+-... ...++...+.-+......++|+++.. ..+ ..
T Consensus 170 ~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~-~~~d~~~~l~~l~~~~~a~viil~~~---~~~~~~ 245 (452)
T cd06362 170 FNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSA-TEEEFDNIIRKLLSKPNARVVVLFCR---EDDIRG 245 (452)
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCC-CHHHHHHHHHHHhhcCCCeEEEEEcC---hHHHHH
Confidence 345679999998775544 4445556666555555554321 24567777877766556899999886 356 88
Q ss_pred HHHHHHhcCCC
Q psy16953 433 VCAALKDKRIT 443 (806)
Q Consensus 433 f~~a~r~~~~~ 443 (806)
|++.+++....
T Consensus 246 ~~~~a~~~g~~ 256 (452)
T cd06362 246 LLAAAKRLNAE 256 (452)
T ss_pred HHHHHHHcCCc
Confidence 99888887654
No 416
>PRK09275 aspartate aminotransferase; Provisional
Probab=29.81 E-value=5.5e+02 Score=30.78 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcccCCccEEEeCCcchHHHHHHHHhcCCCCCCCCCCCCC---ccc-ccC----CCCCC--CceEEEEcc
Q psy16953 141 YQEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGKKEIPSETSADGA---TAN-FLL----PGGQE--QTKAIVWGM 210 (806)
Q Consensus 141 ~~eG~~~l~~~g~~~g~~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~---~~~-~~~----~~~~~--~t~v~V~G~ 210 (806)
...|.+.|++.- ++++.-.-|+++.++.++++.+++. .-|+....+.. -+. ++. ....+ +..|+ ++-
T Consensus 92 ~~~g~~~l~~~i-~l~~g~p~~~~~~~v~e~~~~~~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~-vT~ 168 (527)
T PRK09275 92 DVPGIDFLRDAV-SYVRDQLGFDADEFVYELVDGIIGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLF-AVE 168 (527)
T ss_pred CCchHHHHHHHH-hhcCCCCCCCCCHHHHHHHHHHhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEE-EeC
Confidence 356888888862 4455555678888888888777653 23332222200 111 110 11112 22343 333
Q ss_pred Chh-HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCC--CeeEEEeecCChh---
Q psy16953 211 QTR-AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNK--DADVLVNFASLRS--- 283 (806)
Q Consensus 211 ~~r-~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~--Dlavivi~~~~~~--- 283 (806)
++. .+..++..= ... .-++|+ .+.+ .-|+|+...+ ++.-. .+.++-+-..+..
T Consensus 169 Ga~~al~~~~~aL----------~~~-~ll~pG--------D~Vlv~~P~y~~Y~~-~~~l~g~~~~~v~v~~~~~~~f~ 228 (527)
T PRK09275 169 GGTAAMCYIFDSL----------KEN-GLLKAG--------DKIALMTPIFTPYLE-IPELPRYDLEVVHINADEENEWQ 228 (527)
T ss_pred CHHHHHHHHHHHH----------hhh-hcCCCC--------CEEEEeCCChHHHHH-HHHHcCCCeEEEEeecCcccCCC
Confidence 322 233222210 000 013444 2333 3788887776 44322 2333311111111
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCC------CHHHHHHHHHHHHHc--CCeEEccCccc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGI------PENMTRKLNLLAKEK--GVSIIGPATVG 333 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf------~E~~~~~l~~~a~~~--giriiGPN~~G 333 (806)
--.+.++++...++|.+++.+..= +++..++|.++|+++ ++-||==++-+
T Consensus 229 ~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~ 286 (527)
T PRK09275 229 YPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG 286 (527)
T ss_pred CCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence 113456666667899888877543 447788999999654 78777544443
No 417
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=29.73 E-value=1.1e+02 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
...+++++....++ .||+++..++...+++...|+.+++.++
T Consensus 30 ~~~vlkalk~gkak-lViiA~D~~~~~kkki~~~~~~~~Vpv~ 71 (108)
T PTZ00106 30 TKSTLKALRNGKAK-LVIISNNCPPIRRSEIEYYAMLSKTGVH 71 (108)
T ss_pred HHHHHHHHHcCCee-EEEEeCCCCHHHHHHHHHHHhhcCCCEE
Confidence 35567777655555 6778999999999999999999999875
No 418
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=29.48 E-value=6.3e+02 Score=27.40 Aligned_cols=135 Identities=9% Similarity=-0.004 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc--CCcch-HHHHHHHHhcC--CC
Q psy16953 369 SGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEV--GGVEE-YEVCAALKDKR--IT 443 (806)
Q Consensus 369 SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Ei--gg~~d-~~f~~a~r~~~--~~ 443 (806)
+..++..+...+.+.|+-++..-...-. .|=...=-|.++..+.+..+|-+.+-. .+.++ .+|-++++++- .+
T Consensus 91 ~~~LA~~i~~~l~~~Gi~~~~~~~~~~~--lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~ai~~al~~~~ 168 (272)
T cd07362 91 DPELGRLLVEEGQEAGLRVKAVNDPTYI--WDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEVIGKALLESD 168 (272)
T ss_pred CHHHHHHHHHHHHHcCCceeeccCCCCC--CCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 4568899999888888776532111112 344444446667777778899888762 23333 56666665542 47
Q ss_pred CCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHh
Q psy16953 444 KPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 444 KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~ 509 (806)
+-|+++-+|-..-.+.... ...-|. .+-....+..||..+.+. +.-.|+++|.+......+.
T Consensus 169 ~rv~ii~SG~lsH~l~~~~-~~~~g~-~~~~~~~~~~fD~~i~~~--l~~gd~~~l~~~~~~~~~~ 230 (272)
T cd07362 169 KRVVFLASGSLSHNLVRGP-EAEEGM-NHYPSLAEQQMDRRFIQL--LREGQFQEACNMLPQYARA 230 (272)
T ss_pred CCEEEEEeCcccccCCCCC-CCcccc-cCCCChhHHHHHHHHHHH--HHcCCHHHHHHhCHHHHHH
Confidence 8899998877654221111 000010 011111223455555432 3445777777766555444
No 419
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.07 E-value=1.2e+02 Score=35.03 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=43.8
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC---CCCCEEEEEcCCCCHHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF---PQIRSIAIIAEGIPENM 311 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~---~gvk~~viis~Gf~E~~ 311 (806)
-.+|+..++ +.+.-|--|+ ++|++++-++|+++.. +++|.+|++|..|+-++
T Consensus 71 d~~~~~~~~-i~g~WdtlIL---avtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~ 125 (429)
T PF10100_consen 71 DHVFQDYEE-IEGEWDTLIL---AVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHL 125 (429)
T ss_pred hHhhcCHHH-hcccccEEEE---EechHHHHHHHHhcCHHHHhhCCEEEEECcccchHH
Confidence 568999999 7888876555 8899999999999853 78999999999998754
No 420
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=29.07 E-value=1.3e+02 Score=35.81 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=69.7
Q ss_pred cCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC--CCCCEEEEEeCcCcCcCcc
Q psy16953 383 ATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR--ITKPLVAWCIGTCASMFTS 460 (806)
Q Consensus 383 ~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~--~~KPVV~lk~Grs~~~~g~ 460 (806)
...+|..+|+.-.. --...+.+..++.. ..-|++++|.|.=+ ..+++++...+ ..+|.+.+-....++-.-.
T Consensus 199 ~~~~f~~~ig~s~~---~~~~~~~~~~~A~~--~~pvlI~GE~GtGK-~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPK---MRQVVEQARKLAML--DAPLLITGDTGTGK-DLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHH---HHHHHHHHHHHhCC--CCCEEEECCCCccH-HHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 44677777654332 11233333333332 23488999954433 55777776553 5689887765443320000
Q ss_pred ccccccc-CCcCCCCcccHHHHHHHHHHc--CCcccCChhhHHHHHHHHHHhhhhCCcccc
Q psy16953 461 EVQFGHA-GSCANSDAETAVVKNKSLAQA--GAHVPSSFDTLGDIIGSVYKDLVSRGDIVP 518 (806)
Q Consensus 461 ~aa~sHt-Galag~~~~~a~~~~aa~~qa--Gvi~v~~~~EL~~~~~all~~L~~~g~i~~ 518 (806)
..-++|. |+..+.... ....|+++ |.+..++.++|....+.-+-++..+|...+
T Consensus 273 ~elFG~~~~~~~~~~~~----~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 273 SELFGHAPGAYPNALEG----KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR 329 (520)
T ss_pred HHhcCCCCCCcCCcccC----CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCccc
Confidence 1123443 233332222 33456554 999999999998888876666656665433
No 421
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.06 E-value=85 Score=41.04 Aligned_cols=68 Identities=6% Similarity=-0.062 Sum_probs=45.3
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|+++.+++. |++ |... ....+.+++.+...-++ .+++|||-.--|+| ++.+..+.+|+++.+++.
T Consensus 117 ~~ar~la~~~GV--Pvp-p~t~---~~v~~~eea~~~ae~iG-yPvIVKP~~GGGGr----G~riV~~~eEL~~a~~~a 184 (1143)
T TIGR01235 117 VAARNLAIKAGV--PVV-PGTD---GPPETMEEVLDFAAAIG-YPVIIKASWGGGGR----GMRVVRSEADVADAFQRA 184 (1143)
T ss_pred HHHHHHHHHcCC--CCC-CCcc---cCcCCHHHHHHHHHHcC-CCEEEEECCCCCCC----ccEEeCCHHHHHHHHHHH
Confidence 456777777776 554 3321 01457788777666666 79999996655544 366677889998877653
No 422
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=29.04 E-value=1.5e+02 Score=33.52 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=27.2
Q ss_pred cceeecccccccHHHHhcc---CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 250 GHKEVLIPVYKKMEDAMSK---NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 250 g~~~i~~p~y~sv~daip~---~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~ 305 (806)
+.+.|-+-.-++.++ +|= .+|+++- ++..+...+......++|++.++ +|+
T Consensus 70 ~g~~i~v~~~~~p~~-~~w~~~gvDiVle---~tG~~~s~~~a~~~l~aGAk~V~-iSa 123 (336)
T PRK13535 70 GDDAIRLLHERDIAS-LPWRELGVDVVLD---CTGVYGSREDGEAHIAAGAKKVL-FSH 123 (336)
T ss_pred CCEEEEEEEcCCccc-CcccccCCCEEEE---ccchhhhHHHHHHHHHcCCEEEE-ecC
Confidence 334443333345666 553 5665443 66766666555555557776444 443
No 423
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.99 E-value=1.5e+02 Score=32.23 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=57.9
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.++|.+. ...++|++.|+.. .-.|+-.+++.. +.-.=.+..++..+.+..+ +....|+.++ +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~-------~~~I~v~~r~~~-~~~~l~~~~g~~~~~~~~e-~~~~aDiIiL--a- 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVS-------PDQIICSDLNVS-NLKNASDKYGITITTNNNE-VANSADILIL--S- 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCC-------CceEEEECCCHH-HHHHHHHhcCcEEeCCcHH-HHhhCCEEEE--E-
Confidence 4789999764 3477888887510 225777776421 1100001124455667777 4445565444 4
Q ss_pred CChhhHHHHHHHhcC--CCCCEEEEEcCCCCHHHHHH
Q psy16953 280 SLRSAYDSTIETLGF--PQIRSIAIIAEGIPENMTRK 314 (806)
Q Consensus 280 ~~~~~~~~~le~~~~--~gvk~~viis~Gf~E~~~~~ 314 (806)
+++..+.++++.+.. ++=+.+|=+.+|++-+..++
T Consensus 71 vkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 71 IKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN 107 (272)
T ss_pred eChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH
Confidence 456889999988752 12245677778997654443
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.77 E-value=2.2e+02 Score=33.26 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCC--------------C-CcccccCCCCCCCceEEEEccChh--------HHHhhhhcccc
Q psy16953 168 MTAIVGMALGKKEIPSETSAD--------------G-ATANFLLPGGQEQTKAIVWGMQTR--------AVQSMLDFDFV 224 (806)
Q Consensus 168 m~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~t~v~V~G~~~r--------~~~~ll~~gf~ 224 (806)
...+-++|++..+++...|.. . .+...-++ -.+.+.|..+|+++. ....|...|+
T Consensus 52 i~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~-~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~- 129 (451)
T COG0541 52 IKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLA-KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGK- 129 (451)
T ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccC-CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCC-
Confidence 344556677777766555433 1 01111111 346788999999864 2456666666
Q ss_pred cccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee--cCChhhHHHHHHHhcCCCCCEEEE
Q psy16953 225 CRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF--ASLRSAYDSTIETLGFPQIRSIAI 302 (806)
Q Consensus 225 ~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~--~~~~~~~~~~le~~~~~gvk~~vi 302 (806)
++-.|.-+. .---+|..+.. +.+.+++.+.-.- ..|..-+...++.+...+...++|
T Consensus 130 ----------kvllVaaD~----------~RpAA~eQL~~-La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIv 188 (451)
T COG0541 130 ----------KVLLVAADT----------YRPAAIEQLKQ-LAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIV 188 (451)
T ss_pred ----------ceEEEeccc----------CChHHHHHHHH-HHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 444444331 00124555555 4555555444110 012234466788888788888888
Q ss_pred EcCC---CCHHHHHHHHHHHH
Q psy16953 303 IAEG---IPENMTRKLNLLAK 320 (806)
Q Consensus 303 is~G---f~E~~~~~l~~~a~ 320 (806)
=|+| +-|++.+||.++.+
T Consensus 189 DTAGRl~ide~Lm~El~~Ik~ 209 (451)
T COG0541 189 DTAGRLHIDEELMDELKEIKE 209 (451)
T ss_pred eCCCcccccHHHHHHHHHHHh
Confidence 8887 45688888888754
No 425
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.70 E-value=74 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=27.6
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
-.++.+++.+.+.|+-. ++.+ ||- ..-.++.+.+.+.|+.++||+.
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~l-se~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFL-SENAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTT-TTHHHHHHHHHHTT-EESSS-H
T ss_pred ccHHHHhhHhhhhcCcc--cccccchh-HHHHHHHHHHHHCCCEEECcCh
Confidence 45678888887776553 2322 332 2233455566689999999973
No 426
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=28.50 E-value=2.1e+02 Score=32.16 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCccEEEE--EEccCCcch-HHHHHHHHhcC-CCCCEEEEEeCcCcCcCcccccccccCCcC-CCCcccH
Q psy16953 404 MDHILRYQADPEVKMIVL--LGEVGGVEE-YEVCAALKDKR-ITKPLVAWCIGTCASMFTSEVQFGHAGSCA-NSDAETA 478 (806)
Q Consensus 404 ~D~l~~l~~Dp~Tk~I~l--y~Eigg~~d-~~f~~a~r~~~-~~KPVV~lk~Grs~~~~g~~aa~sHtGala-g~~~~~a 478 (806)
.++++++.++ ..+.|++ |+ -|.+.. +.+.++++++. +++|||+. -||.. |... +.+..
T Consensus 223 ~~~l~~~~~~-~~~GiVl~~~G-~Gn~p~~~~~~~~l~~~~~~Gi~VV~~--Sr~~~-----------G~v~~~~Y~~-- 285 (335)
T PRK09461 223 AEVVRNFLRQ-PVKALILRSYG-VGNAPQNPALLQELKEASERGIVVVNL--TQCMS-----------GKVNMGGYAT-- 285 (335)
T ss_pred HHHHHHHHhC-CCCEEEEccCC-CCCCCCCHHHHHHHHHHHHCCCEEEEe--CCCCC-----------CcCCccchhh--
Confidence 4677777655 3676665 44 344454 67888888874 67888774 33332 2221 12211
Q ss_pred HHHHHHHHHcCCcccCChh
Q psy16953 479 VVKNKSLAQAGAHVPSSFD 497 (806)
Q Consensus 479 ~~~~aa~~qaGvi~v~~~~ 497 (806)
...++++|++-..++.
T Consensus 286 ---g~~l~~~G~i~~g~lt 301 (335)
T PRK09461 286 ---GNALAHAGVISGADMT 301 (335)
T ss_pred ---hHHHHhCCEEECCCCC
Confidence 2247788999888875
No 427
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=28.48 E-value=7.8e+02 Score=26.62 Aligned_cols=77 Identities=8% Similarity=0.010 Sum_probs=46.5
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHH
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALK 438 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r 438 (806)
.-+|+++.+....+....+.+.+. ++. .++..-.-.....|+.+.+..+.+ .+..+|+++.- + .+ ..|++.++
T Consensus 134 ~~~vail~~~~~~g~~~~~~~~~~-~~~-~v~~~~~~~~~~~d~~~~i~~l~~-~~pd~v~~~~~--~-~~~~~~~~~~~ 207 (333)
T cd06359 134 YKRVFLIAPNYQAGKDALAGFKRT-FKG-EVVGEVYTKLGQLDFSAELAQIRA-AKPDAVFVFLP--G-GMGVNFVKQYR 207 (333)
T ss_pred CCeEEEEecCchhhHHHHHHHHHH-hCc-eeeeeecCCCCCcchHHHHHHHHh-CCCCEEEEEcc--C-ccHHHHHHHHH
Confidence 457999998888888877766443 221 222211111134577877777654 33467776554 3 34 77888888
Q ss_pred hcCC
Q psy16953 439 DKRI 442 (806)
Q Consensus 439 ~~~~ 442 (806)
+...
T Consensus 208 ~~G~ 211 (333)
T cd06359 208 QAGL 211 (333)
T ss_pred HcCc
Confidence 8764
No 428
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=28.47 E-value=2.3e+02 Score=32.98 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCCEEEEeCChhHHHHH----HHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHH
Q psy16953 360 PGSVAYVSRSGGMSNEL----NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVC 434 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l----~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~ 434 (806)
--.|++|......+... ...+.+.|+-+.....+-... .+.++...+.-+..+++.++|+++.. ..+ ..|+
T Consensus 174 W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~l~~~~~a~vVvl~~~---~~~~~~ll 249 (458)
T cd06375 174 WTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSA-DRKSYDSVIRKLLQKPNARVVVLFTR---SEDARELL 249 (458)
T ss_pred CeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCC-CHHHHHHHHHHHhccCCCEEEEEecC---hHHHHHHH
Confidence 34588887665544443 344555665555444453321 24567777877777788999999887 455 8888
Q ss_pred HHHHhcCCCCCEE
Q psy16953 435 AALKDKRITKPLV 447 (806)
Q Consensus 435 ~a~r~~~~~KPVV 447 (806)
+.+++....++.|
T Consensus 250 ~~a~~~g~~~~wi 262 (458)
T cd06375 250 AAAKRLNASFTWV 262 (458)
T ss_pred HHHHHcCCcEEEE
Confidence 8888876554333
No 429
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.46 E-value=5.8e+02 Score=26.29 Aligned_cols=158 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc-cccccCCccccccCCCCcccccccCCCCC
Q psy16953 282 RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT-VGGLKPGCFKIGNTGGMMDNILHSKLYRP 360 (806)
Q Consensus 282 ~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~-~Gii~p~~~~ig~~~g~~~~~~~~~~~~~ 360 (806)
.+.....++.+...++.++++.+...+... .+.+.+.|+.++==|+ ..-..-......+........-.......
T Consensus 41 ~~~~~~~i~~~~~~~vdgii~~~~~~~~~~----~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~ 116 (268)
T cd06270 41 AEKEREAIEFLLERRCDALILHSKALSDDE----LIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGH 116 (268)
T ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCHHH----HHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCC
Q ss_pred CCEEEEeCChhH------HHHHHHHHHhcCCce--eEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-H
Q psy16953 361 GSVAYVSRSGGM------SNELNNIISKATNGV--YEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-Y 431 (806)
Q Consensus 361 G~ValvSQSG~l------~~~l~~~~~~~g~G~--s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~ 431 (806)
++|++++.+... ...+.+.+.++|+-+ ........+ .+-....+-+++...|+.++|+.... .- .
T Consensus 117 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ai~~~~d----~~a~ 190 (268)
T cd06270 117 RKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFT--EEGGYAAMQELLARGAPFTAVFCAND----EMAA 190 (268)
T ss_pred ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCC--HHHHHHHHHHHHhCCCCCCEEEEcCc----HHHH
Q ss_pred HHHHHHHhcCCCCC----EEEE
Q psy16953 432 EVCAALKDKRITKP----LVAW 449 (806)
Q Consensus 432 ~f~~a~r~~~~~KP----VV~l 449 (806)
.+++++++...+.| |+.+
T Consensus 191 g~~~~l~~~g~~ip~di~v~g~ 212 (268)
T cd06270 191 GAISALREHGISVPQDVSIIGF 212 (268)
T ss_pred HHHHHHHHcCCCCCCceeEEEe
No 430
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.34 E-value=7.5e+02 Score=27.03 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEccCcccc-cc----CCccccccCCCCccc-cccc-CCC------CCCCEEEEeCChh
Q psy16953 305 EGIPENMTRKLNLLAKEKGVSIIGPATVGG-LK----PGCFKIGNTGGMMDN-ILHS-KLY------RPGSVAYVSRSGG 371 (806)
Q Consensus 305 ~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi-i~----p~~~~ig~~~g~~~~-~~~~-~~~------~~G~ValvSQSG~ 371 (806)
+++.-.....+..++.++++.+|.|.+-.- +. |..+++.-....... .... ..+ ..-.|+++.....
T Consensus 76 G~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~ 155 (347)
T cd06340 76 GAYQSAVTLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTE 155 (347)
T ss_pred cccchHhHHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCch
Confidence 334444555677788888999998765321 11 111121100000000 0000 001 1247999999888
Q ss_pred HHHHHHHH----HHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCCCCE
Q psy16953 372 MSNELNNI----ISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRITKPL 446 (806)
Q Consensus 372 l~~~l~~~----~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPV 446 (806)
.+..+... +++.|+-+...... ...+.++...+..+.+ .+.++|++... -.+ ..|++.+++.....|+
T Consensus 156 ~g~~~~~~~~~~~~~~G~~vv~~~~~---~~~~~d~~~~i~~l~~-~~~d~v~~~~~---~~~~~~~~~~~~~~G~~~~~ 228 (347)
T cd06340 156 FGTSVAEAIKKFAKERGFEIVEDISY---PANARDLTSEVLKLKA-ANPDAILPASY---TNDAILLVRTMKEQRVEPKA 228 (347)
T ss_pred HhHHHHHHHHHHHHHcCCEEEEeecc---CCCCcchHHHHHHHHh-cCCCEEEEccc---chhHHHHHHHHHHcCCCCcE
Confidence 77766543 44555544332222 1135678888888754 44567777666 345 7899999887654443
Q ss_pred E
Q psy16953 447 V 447 (806)
Q Consensus 447 V 447 (806)
+
T Consensus 229 ~ 229 (347)
T cd06340 229 V 229 (347)
T ss_pred E
Confidence 3
No 431
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.06 E-value=1.6e+02 Score=31.78 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=54.2
Q ss_pred eEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+.- ..+.|.+.|.+ . .-.|+-++++..++...-.... +.....+..+ +....|+.++ +
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~-~------~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e-~~~~aDvVil---a 71 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVA-T------PEEIILYSSSKNEHFNQLYDKYPTVELADNEAE-IFTKCDHSFI---C 71 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC-C------cccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHH-HHhhCCEEEE---e
Confidence 5888996632 35677666520 0 1245555553211100000011 1334567777 3455676555 6
Q ss_pred CChhhHHHHHHHhcC---CCCCEEEEEcCCCCHHHHHH
Q psy16953 280 SLRSAYDSTIETLGF---PQIRSIAIIAEGIPENMTRK 314 (806)
Q Consensus 280 ~~~~~~~~~le~~~~---~gvk~~viis~Gf~E~~~~~ 314 (806)
+|++.+.++++++.. .+ +.+|.++.|+.-...++
T Consensus 72 vpp~~~~~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 72 VPPLAVLPLLKDCAPVLTPD-RHVVSIAAGVSLDDLLE 108 (277)
T ss_pred cCHHHHHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 677888888888742 23 36788889998654443
No 432
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=28.00 E-value=1.1e+02 Score=33.66 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.2
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 110 ~~~kPvIAaV~G~a~G 125 (298)
T PRK12478 110 RASKPVIAQVHGWCVG 125 (298)
T ss_pred hCCCCEEEEEccEEeh
Confidence 3789999999888764
No 433
>KOG2799|consensus
Probab=27.99 E-value=48 Score=37.35 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=73.7
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-----HHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-----YEV 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-----~~f 433 (806)
..|+++-.---.+++.+.++..+-.|---..|..+|+.. .--...+-+.-+-+||.+.+|++.+ +||+.. --.
T Consensus 285 ldG~igC~vngaglamaTmdiiklhgg~panfldVGg~A-tve~v~eaf~litsd~kv~ailvni-fGgi~rCDvia~Gi 362 (434)
T KOG2799|consen 285 LDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGA-TVEQVREAFSLITSDKKVMAILVNI-FGGIMRCDVIAFGI 362 (434)
T ss_pred cCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCC-cHHHHHHHHHHHhcChhHHHHHHHH-hcCeeeccceecch
Confidence 467888777778888888888888887788888999883 2334567788899999999998877 688875 125
Q ss_pred HHHHHhcCCCCCEEEEEeCcCc
Q psy16953 434 CAALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~ 455 (806)
..++|+...+.|||+.--|+..
T Consensus 363 v~aar~l~~~ipiv~rlqgt~v 384 (434)
T KOG2799|consen 363 VLAARELELNIPIVVRLQGTRV 384 (434)
T ss_pred hhhhhhhhcCCCEEEEecCCch
Confidence 7788888899999987655544
No 434
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=27.95 E-value=3e+02 Score=30.74 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=60.9
Q ss_pred hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHc-CCeEEccCccccccCCccccccCCCCcccccccCCCCC
Q psy16953 282 RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEK-GVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRP 360 (806)
Q Consensus 282 ~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~-giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~ 360 (806)
...+..+++.+.+++++.+.+++.|-+-........+..+. ++.+. ++.+..+. ........+
T Consensus 29 ~~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~------~~~~~~~~----------~~~~~~~~~ 92 (340)
T PRK11382 29 VPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY------AISGWEFC----------DNTPYRLDD 92 (340)
T ss_pred hHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE------EeccHHHH----------hcCCcCCCC
Confidence 34566788888778999999999998774444333333322 22211 12222110 011112345
Q ss_pred CC-EEEEeCChhHHH--HHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHH
Q psy16953 361 GS-VAYVSRSGGMSN--ELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILR 409 (806)
Q Consensus 361 G~-ValvSQSG~l~~--~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~ 409 (806)
+. |=.|||||.-.. ..+.+++++| ...|++=|. .+..+..+-++
T Consensus 93 ~~lvI~iS~SGeT~e~i~al~~ak~~G---a~~I~IT~~--~~S~L~~~ad~ 139 (340)
T PRK11382 93 RCAVIGVSDYGKTEEVIKALELGRACG---ALTAAFTKR--ADSPITSAAEF 139 (340)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcC---CeEEEEECC--CCChHHHhCCE
Confidence 55 456899995543 3456667765 477777776 57766665554
No 435
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=27.83 E-value=2.4e+02 Score=30.86 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=59.6
Q ss_pred CceEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeec-cccc-ccH-HHHhccCCCeeEE
Q psy16953 202 QTKAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL-IPVY-KKM-EDAMSKNKDADVL 275 (806)
Q Consensus 202 ~t~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~-~p~y-~sv-~daip~~~Dlavi 275 (806)
..+|+|+|.+ +...+.+.+.|+ ...||-......+..- ..+.+ +-.+ .+. .++ -...|+.++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~---------~v~i~g~d~~~~~~~~--a~~lgv~d~~~~~~~~~~-~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGL---------VVRIIGRDRSAATLKA--ALELGVIDELTVAGLAEA-AAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCC---------eEEEEeecCcHHHHHH--HhhcCcccccccchhhhh-cccCCEEEE
Confidence 3578899955 456788888888 6778887775310000 01123 2222 222 221 222466555
Q ss_pred EeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 276 VNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++|-.+..++++++.. ....++|+=...+...-.+.+.+...+.. +++|
T Consensus 71 ---avPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg 120 (279)
T COG0287 71 ---AVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVG 120 (279)
T ss_pred ---eccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEe
Confidence 6788899999999983 33333444334454444444444432322 5554
No 436
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=27.74 E-value=9.1e+02 Score=27.15 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCHHHHHHHHHHhcccCCc---cEEEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceE
Q psy16953 129 KISIFVRRAGPNYQEGLRIIREVGKTLGI---PLFVFGPETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKA 205 (806)
Q Consensus 129 ~~~ivvR~~G~n~~eG~~~l~~~g~~~g~---~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v 205 (806)
++-|.+=.+.|-.++.++-.++..++.|. -|.++..+-+..-+.++|-+ |..+...
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarq---------------------l~~~~~d 90 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQ---------------------LVGDKPD 90 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHH---------------------hhcCCCc
Confidence 46666667777777777766666666666 55555554444444444433 2233335
Q ss_pred EEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCChhhH
Q psy16953 206 IVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAY 285 (806)
Q Consensus 206 ~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~~~~ 285 (806)
+++++.+...+.++...= + .=-||+.=++ -++-..-+|++. |+. ...-++=..|-...
T Consensus 91 viv~i~tp~Aq~~~s~~~-------~-iPVV~aavtd----------~v~a~Lv~~~~~--pg~--NvTGvsD~~~v~q~ 148 (322)
T COG2984 91 VIVAIATPAAQALVSATK-------T-IPVVFAAVTD----------PVGAKLVKSLEQ--PGG--NVTGVSDLLPVAQQ 148 (322)
T ss_pred EEEecCCHHHHHHHHhcC-------C-CCEEEEccCc----------hhhccCCccccC--CCC--ceeecCCcchHHHH
Confidence 566766666666665541 0 0122322211 122233333333 221 11111111133344
Q ss_pred HHHHHHhcCCCCCEE-EEEcCCC--CHHHHHHHHHHHHHcCCeEE
Q psy16953 286 DSTIETLGFPQIRSI-AIIAEGI--PENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 286 ~~~le~~~~~gvk~~-viis~Gf--~E~~~~~l~~~a~~~girii 327 (806)
-+++++.- .++|.+ +++++|. +..+++++++.|++.|+.++
T Consensus 149 i~lik~~~-Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vv 192 (322)
T COG2984 149 IELIKALL-PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVV 192 (322)
T ss_pred HHHHHHhC-CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEE
Confidence 45555665 899999 8888886 45899999999999998876
No 437
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=27.67 E-value=7.8e+02 Score=26.36 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC
Q psy16953 112 KGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP 164 (806)
Q Consensus 112 ~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~ 164 (806)
+|+..|+++....+...++.++++=.+.+.+.+.+..+++-.+-++.. ++++
T Consensus 21 ~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~-iig~ 72 (336)
T cd06360 21 RGFELALQEAGGKLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDV-VVGP 72 (336)
T ss_pred HHHHHHHHHhCCCcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcE-EEcc
Confidence 467777777432333466777888777777887777777644445666 4444
No 438
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=27.60 E-value=1.8e+02 Score=32.76 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=30.5
Q ss_pred cHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH
Q psy16953 261 KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE 309 (806)
Q Consensus 261 sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E 309 (806)
+..+ +.+.+|++++ +.|.....+.+.++.++|+ .+|=.|+.|.-
T Consensus 61 ~~~~-~~~~~DvVf~---alP~~~s~~~~~~~~~~G~-~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEE-IAEDADVVFL---ALPHGVSAELAPELLAAGV-KVIDLSADFRL 104 (346)
T ss_pred CHHH-hhcCCCEEEE---CCCchHHHHHHHHHHhCCC-EEEeCChhhhc
Confidence 3455 3335777666 7888888888888877884 47777877743
No 439
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=27.52 E-value=6.4e+02 Score=27.94 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc------ccCCcccc
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG------LKPGCFKI 342 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi------i~p~~~~i 342 (806)
++.+.+...-..|..++..+.+-+.+.+|..++ +++.-.....+..++.+.++.+|+|.+..- ..|.-+++
T Consensus 41 ~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aii---G~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~ 117 (389)
T cd06352 41 DFTFVYLDTECSESVALLAAVDLYWEHNVDAFI---GPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRT 117 (389)
T ss_pred eEEEEEecCCCchhhhHHHHHHHHhhcCCcEEE---CCCChhHHHHHHHHHhcCCCCEecccccccccCccccCCceeec
Q ss_pred ccCCCCcccccccCCCCCC--CEEEEeC-----ChhHHHHHHHHHHhcCCceeEEEeecCCCCC-CCCHHHHHHHhhcCC
Q psy16953 343 GNTGGMMDNILHSKLYRPG--SVAYVSR-----SGGMSNELNNIISKATNGVYEGVAIGGDRYP-GTTFMDHILRYQADP 414 (806)
Q Consensus 343 g~~~g~~~~~~~~~~~~~G--~ValvSQ-----SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~-d~~~~D~l~~l~~Dp 414 (806)
.-.............-..| .++++.. +-.+...+...+.+.|+-+......-.. . ..++...+..+.+..
T Consensus 118 ~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~ 195 (389)
T cd06352 118 LPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDN--SGAEDLLEILQDIKRRS 195 (389)
T ss_pred CCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCC--ccchhHHHHHHHhhhcc
Q ss_pred CccEEEEEEccCCcch-HHHHHHHHhcCCCCCEEEE
Q psy16953 415 EVKMIVLLGEVGGVEE-YEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 415 ~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~l 449 (806)
++|+++.. ..+ ..|++.+++....+.-..|
T Consensus 196 --~vii~~~~---~~~~~~~l~q~~~~g~~~~~~~~ 226 (389)
T cd06352 196 --RIIIMCGS---SEDVRELLLAAHDLGLTSGDYVF 226 (389)
T ss_pred --eEEEEECC---HHHHHHHHHHHHHcCCCCCcEEE
No 440
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.32 E-value=1.6e+02 Score=34.04 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=33.6
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEccC
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGPN 330 (806)
...+.+++-+.+.+|..+||= || -+..=+.+.-++.|+.+.||+
T Consensus 50 ~~~~~lv~fA~~~~idl~vVG----PE~pL~~GvvD~l~~~Gi~vFGPs 94 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVG----PEAPLVAGVVDALRAAGIPVFGPT 94 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEEC----CcHHHhhhhHHHHHHCCCceeCcC
Confidence 356777777888888877763 33 466678888889999999996
No 441
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=27.24 E-value=3.3e+02 Score=28.95 Aligned_cols=153 Identities=15% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE-ccCccccccCCccccccCCCCcccccccCCCCCCC
Q psy16953 285 YDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII-GPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGS 362 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii-GPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ 362 (806)
.++.++++.+.|..+++|=.+ |+.++...++++..|++.+.++ =|...--+.|+ ...-+.|+ .+..++
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~---------aDa~l~~s-vlNs~~ 85 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRD---------ADALFFPS-VLNSDD 85 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCcC---------CCEEEEEE-eecCCC
Confidence 345777777799998777555 6888888889889999888765 66655555554 11112222 122233
Q ss_pred EEEEeCChhHHHHHHHHHHhcCCceeEEE--------eecCCCCCC-CCHHHHHHHhhcCCC-ccEEEEEEccCCcc-h-
Q psy16953 363 VAYVSRSGGMSNELNNIISKATNGVYEGV--------AIGGDRYPG-TTFMDHILRYQADPE-VKMIVLLGEVGGVE-E- 430 (806)
Q Consensus 363 ValvSQSG~l~~~l~~~~~~~g~G~s~~v--------s~Gn~~~~d-~~~~D~l~~l~~Dp~-Tk~I~ly~Eigg~~-d- 430 (806)
.-++-+.=..+...+......=+.-.|.| -+++.. ++ .+-.|+.-|.+--.+ -+.=++|+|.||.. +
T Consensus 86 ~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~-~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~ 164 (223)
T TIGR01768 86 PYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAK-PIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEP 164 (223)
T ss_pred chHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeeccccc-ccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Confidence 33333332222222211111112222221 112211 22 455555554332111 23347899966544 3
Q ss_pred --HHHHHHHHhcCCCCCEEE
Q psy16953 431 --YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 431 --~~f~~a~r~~~~~KPVV~ 448 (806)
.++.+.+++...+.||++
T Consensus 165 v~~e~i~~v~~~~~~~pl~v 184 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFV 184 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEE
Confidence 567888887654688776
No 442
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=27.17 E-value=5.5e+02 Score=27.75 Aligned_cols=130 Identities=8% Similarity=-0.097 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC--Ccch-HHHHHHHHhcC--CC
Q psy16953 369 SGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG--GVEE-YEVCAALKDKR--IT 443 (806)
Q Consensus 369 SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig--g~~d-~~f~~a~r~~~--~~ 443 (806)
+-.++.++...+.+.|+-....-+-.-. .|=...=-|.|+..+.+..+|.+++-.+ +.++ .+|=++++++- .+
T Consensus 86 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~--lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~~~~ 163 (268)
T cd07371 86 DVELAEACVEEGRKAGLVTRMMRYPRFP--IDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAG 163 (268)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCC--CCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHHHcC
Confidence 5678899998888877755432122221 2333333356666666777888887532 3334 66777776542 34
Q ss_pred CCEEEEEeCcCcCcCccccc--ccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 444 KPLVAWCIGTCASMFTSEVQ--FGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 444 KPVV~lk~Grs~~~~g~~aa--~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
|-|+++-+|-..-.+....- ..|.+ ... -+..||+.+-+. +...++++|.+......
T Consensus 164 ~rv~iIgSG~lsH~l~~~~~~~~~~~~----~~~-~~~~fD~~~~~~--~~~gd~~~l~~~~~~~~ 222 (268)
T cd07371 164 KRVAVLGSGGLSHSHFHEEIDPPKDHI----ESE-EGDKWNRRMLEL--MEQGDMSALFELLPQYI 222 (268)
T ss_pred CcEEEEEecCccccccCCCCCcccccc----cch-hhHHHHHHHHHH--HHcCCHHHHHhcCHHHH
Confidence 77999988776542222110 01111 111 134488887665 45558888777553433
No 443
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=27.15 E-value=7.6e+02 Score=28.60 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCCCEEEEe---CChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 359 RPGSVAYVS---RSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 359 ~~G~ValvS---QSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
..|+..++- ++...+..+.+.+.+.|+ |+-.+|.-.+. +..+.|.++|+++.|.. .|+..- +.
T Consensus 146 aaGN~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~--------~~~~~L~~~~~v~~V~f---TGs~~~g~~ 214 (456)
T cd07110 146 AAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLNVVTGTGD--------EAGAPLAAHPGIDKISF---TGSTATGSQ 214 (456)
T ss_pred HcCCEEEEECcccchHHHHHHHHHHHHcCCCCCcEEEEecCch--------HHHHHHhcCCCCCEEEE---ECCHHHHHH
Confidence 345554442 223344555666677776 66666653333 45688899999999987 446655 66
Q ss_pred HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC--------cccCC-hhhHHHHH
Q psy16953 433 VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA--------HVPSS-FDTLGDII 503 (806)
Q Consensus 433 f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv--------i~v~~-~~EL~~~~ 503 (806)
+++++.+ ..||+++=-.|.++.+. +.. +.-+..-.....++|..+|- ++.++ .|++.+.+
T Consensus 215 v~~~aa~--~~~~~~lElgG~~~~iV-------~~d--adl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l 283 (456)
T cd07110 215 VMQAAAQ--DIKPVSLELGGKSPIIV-------FDD--ADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERL 283 (456)
T ss_pred HHHHHhh--cCCeEEEEcCCCCeeEE-------CCC--CCHHHHHHHHHHHHHhcCCCCCCCCceEEEcHHHHHHHHHHH
Confidence 6655433 56898887777766421 111 11122222334555666664 22333 55666655
Q ss_pred HHHHHhh
Q psy16953 504 GSVYKDL 510 (806)
Q Consensus 504 ~all~~L 510 (806)
...+.++
T Consensus 284 ~~~~~~~ 290 (456)
T cd07110 284 ATAAEAI 290 (456)
T ss_pred HHHHHhc
Confidence 5555555
No 444
>PRK08321 naphthoate synthase; Validated
Probab=27.12 E-value=76 Score=34.91 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=20.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCC
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCAN 472 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag 472 (806)
...||||+..-|.+-. .|-.-+.++-=.++.
T Consensus 133 ~~pkP~IAaV~G~a~G-gG~~lalacD~ria~ 163 (302)
T PRK08321 133 FMPKVVIAVVPGWAAG-GGHSLHVVCDLTLAS 163 (302)
T ss_pred cCCCCEEEEEcCeeeh-HHHHHHHhCCEEEEe
Confidence 3689999999998875 244544444334443
No 445
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=26.75 E-value=1.6e+02 Score=38.10 Aligned_cols=113 Identities=11% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCC------cccccccceeec-ccc---cccHHHHhc
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDH------KLKFYWGHKEVL-IPV---YKKMEDAMS 267 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~------~~~~~~g~~~i~-~p~---y~sv~daip 267 (806)
.+++|+|+|+++- .++||...| .|.|+-+-++. ..-|++..+.+| -++ .+.+.+ +.
T Consensus 23 ~~s~VLIiG~gGLG~EiaKnL~laG----------Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~e-LN 91 (1008)
T TIGR01408 23 AKSNVLISGMGGLGLEIAKNLVLAG----------VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAE-LN 91 (1008)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC----------CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHH-HC
Confidence 5689999999864 488999999 68888877652 111333444454 222 233333 33
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcC--CeEEccCcccccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKG--VSIIGPATVGGLK 336 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~g--iriiGPN~~Gii~ 336 (806)
|.+-|-+ . .....++.+ .+.. +||.+. -+-+.+.++-++|+++| +.++--+|.|+.-
T Consensus 92 --p~V~V~~--~-~~~l~~e~l-----~~fd-vVV~t~-~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 92 --PYVHVSS--S-SVPFNEEFL-----DKFQ-CVVLTE-MSLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred --CCceEEE--e-cccCCHHHH-----cCCC-EEEECC-CCHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 4343331 1 111113333 3444 444454 34456678999999999 8899999988763
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=26.73 E-value=2.5e+02 Score=29.88 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeec-ccc---cccHHHHhc
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVL-IPV---YKKMEDAMS 267 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~-~p~---y~sv~daip 267 (806)
.+++|+|+|.++- .+++|...| .|++.-|.++.-+. +++..+.+| .++ ...+.+ +
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G----------vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~-l- 98 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG----------VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALAR-I- 98 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC----------CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHH-H-
Confidence 6789999998753 588999988 57888887653110 111222333 111 112233 2
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
.|++.+..+ ....-+.-+++.- .+.. +||.+..-. +....+.++|+++++.++--.+.|
T Consensus 99 -np~v~i~~~---~~~i~~~~~~~~~-~~~D-iVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 99 -NPHIAIETI---NARLDDDELAALI-AGHD-LVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred -CCCCEEEEE---eccCCHHHHHHHH-hcCC-EEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 345444311 1111111222222 2344 444444322 345568889999999998765554
No 447
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.64 E-value=8.6e+02 Score=26.51 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=85.6
Q ss_pred HHHhcCCCCCEEE----EEcCCCC--H--HHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCCCCC
Q psy16953 289 IETLGFPQIRSIA----IIAEGIP--E--NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRP 360 (806)
Q Consensus 289 le~~~~~gvk~~v----iis~Gf~--E--~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~ 360 (806)
+++..++|.+-+. ||+-|.| + ++.++..++.|+.|.. |.+++++.= +.++| |..--.. ...+.
T Consensus 17 V~~a~~~g~PvVaLESTIisHGMPypqn~ema~~ve~iiR~~Gav---pAtIaii~G-~i~iG----Ls~eelE-~la~~ 87 (310)
T COG2313 17 VAQALKNGKPVVALESTIISHGMPYPQNVEMAREVEEIIRDQGAV---PATIAIIGG-KIKIG----LSKEELE-LLARE 87 (310)
T ss_pred HHHHHHcCCCEEEEeeeeeecCCCCCcHHHHHHHHHHHHHhcCCc---ceeEEEecc-EEEee----cCHHHHH-HHhhc
Confidence 3444446666544 5666765 3 5677788888888843 777777763 35665 2110000 01233
Q ss_pred CCEEEEeC-----------Ch-hHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCc
Q psy16953 361 GSVAYVSR-----------SG-GMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGV 428 (806)
Q Consensus 361 G~ValvSQ-----------SG-~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~ 428 (806)
|++.=||+ -| +--.+.+-.++..|+.+--.=++|+------.-.|+-.-|.+=..|+++++..-+=++
T Consensus 88 ~~a~KvsrrDl~~vvA~~~~gaTTVAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsI 167 (310)
T COG2313 88 GNAMKVSRRDLPFVVAEGKNGATTVAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSI 167 (310)
T ss_pred CccceeeccchHHHHhcCcCCcchHHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhh
Confidence 44443432 12 2222333445666776655445554200000111222334445678898887754456
Q ss_pred ch-HHHHHHHHhcCCCCCEEEEEeCcCcCc
Q psy16953 429 EE-YEVCAALKDKRITKPLVAWCIGTCASM 457 (806)
Q Consensus 429 ~d-~~f~~a~r~~~~~KPVV~lk~Grs~~~ 457 (806)
-| .+-++.+.- ++.|||-+.+-..+.+
T Consensus 168 LDi~~TlE~LET--~gVPvvg~~t~~fPaF 195 (310)
T COG2313 168 LDIGLTLEVLET--QGVPVVGYQTNEFPAF 195 (310)
T ss_pred hccHHHHHHHHh--cCcceeecCCCcccch
Confidence 66 666777764 8899999976665553
No 448
>PRK12483 threonine dehydratase; Reviewed
Probab=26.63 E-value=5.8e+02 Score=30.57 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=88.3
Q ss_pred cCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcC--CeEEccCccccccCCccccccCCCCcccccccC
Q psy16953 279 ASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKG--VSIIGPATVGGLKPGCFKIGNTGGMMDNILHSK 356 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~g--iriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~ 356 (806)
++.--.-.++--.|...|+++.|++..+.|+...+. .+.+| +.+.|.+.-.-+.-. .++---.|. .|.+..
T Consensus 91 aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~----~r~~GAeVil~g~~~d~a~~~A-~~la~e~g~--~~v~pf 163 (521)
T PRK12483 91 ASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDG----VRAHGGEVVLHGESFPDALAHA-LKLAEEEGL--TFVPPF 163 (521)
T ss_pred ECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH----HHHCCCEEEEECCCHHHHHHHH-HHHHHhcCC--eeeCCC
Confidence 444444455555666688888888888877644333 23344 344454322211110 000000011 111110
Q ss_pred CCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhh-cCCCccEEEEEEccCCcchHHHHH
Q psy16953 357 LYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQ-ADPEVKMIVLLGEVGGVEEYEVCA 435 (806)
Q Consensus 357 ~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~-~Dp~Tk~I~ly~Eigg~~d~~f~~ 435 (806)
-.|-.++ .| |+++.|+++.+... + =.-++++|+- -+++=+..++. ..|++|+|.+--| +- ..+..
T Consensus 164 -dd~~via--Gq-gTig~EI~eQ~~~~-~-D~VvvpvGgG----GliaGia~~~K~~~p~vkVIGVep~--~a--~~~~~ 229 (521)
T PRK12483 164 -DDPDVIA--GQ-GTVAMEILRQHPGP-L-DAIFVPVGGG----GLIAGIAAYVKYVRPEIKVIGVEPD--DS--NCLQA 229 (521)
T ss_pred -CChHHHH--HH-HHHHHHHHHHhCCC-C-CEEEEecCcc----HHHHHHHHHHHHhCCCCEEEEEEeC--CC--chhhH
Confidence 0111121 35 89999998765321 1 1345566654 11222333433 2699999999766 43 23333
Q ss_pred HHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHh
Q psy16953 436 ALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 436 a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~ 509 (806)
.++ .+||+..=..++-+. ..+. ...| ...++.+-+-.+=++.=+-+|+.+.++.+++.
T Consensus 230 sl~---~g~~~~~~~~~t~ad----Giav----~~~g-----~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~ 287 (521)
T PRK12483 230 ALA---AGERVVLGQVGLFAD----GVAV----AQIG-----EHTFELCRHYVDEVVTVSTDELCAAIKDIYDD 287 (521)
T ss_pred HHh---cCCcccCCCCCceec----eecc----CCCC-----HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 332 456654322222121 1111 1111 12354333333444445557777877777654
No 449
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.40 E-value=5.4e+02 Score=26.40 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEE-E-EcCCCHHHHHHHHHHhcccCCc
Q psy16953 80 AQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFV-R-RAGPNYQEGLRIIREVGKTLGI 157 (806)
Q Consensus 80 ~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivv-R-~~G~n~~eG~~~l~~~g~~~g~ 157 (806)
+-+|+.+.++...+++++.|... .+......+|+.+++++ .+ ++.++- + ......+.+.+.+.+.-+...+
T Consensus 111 ~a~~l~~~~~~~~~v~~~~~~~~-~~~~~~r~~g~~~~l~~-----~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 183 (257)
T PF13407_consen 111 AAEYLAEKLGAKGKVLILSGSPG-NPNTQERLEGFRDALKE-----YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPV 183 (257)
T ss_dssp HHHHHHHHHTTTEEEEEEESSTT-SHHHHHHHHHHHHHHHH-----CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHhccCceEEeccCCCC-chHHHHHHHHHHHHHhh-----cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCc
Confidence 45777888888888888755554 44444456899999998 33 555554 2 3478889999888776555444
Q ss_pred cEEEeCCcchHHHHHHHHhc
Q psy16953 158 PLFVFGPETHMTAIVGMALG 177 (806)
Q Consensus 158 ~i~~~~~~~~m~~~~~~a~~ 177 (806)
...+..+ ..+...+-.+++
T Consensus 184 ~~i~~~~-~~~~~g~~~al~ 202 (257)
T PF13407_consen 184 DAIIACN-DGMALGAAQALQ 202 (257)
T ss_dssp EEEEESS-HHHHHHHHHHHH
T ss_pred eEEEeCC-ChHHHHHHHHHH
Confidence 4444444 344444444443
No 450
>PRK07475 hypothetical protein; Provisional
Probab=26.33 E-value=3.3e+02 Score=29.00 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCCCCCCC
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGS 362 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ 362 (806)
....+..+.+.+.|+..++ ++.||.-.-+++|. .+.++.++-+.. ...+. +. .......+
T Consensus 65 ~~l~~aa~~L~~~G~d~I~-~~Cgt~~~~~~~l~---~~~~VPv~~ss~--~~v~~-------------l~-~~~~~~~k 124 (245)
T PRK07475 65 DAFVAAARELEAEGVRAIT-TSCGFLALFQRELA---AALGVPVATSSL--LQVPL-------------IQ-ALLPAGQK 124 (245)
T ss_pred HHHHHHHHHHHHcCCCEEE-echHHHHHHHHHHH---HHcCCCEeccHH--HHHHH-------------HH-HhccCCCe
Confidence 3455566666678998555 57788766666663 335888885321 11111 00 00112347
Q ss_pred EEEEeCChhHHHHHHHHHHhcCCc--eeEEEeecCCCCCCC--------------------CHHHHHHHhhc-CCCccEE
Q psy16953 363 VAYVSRSGGMSNELNNIISKATNG--VYEGVAIGGDRYPGT--------------------TFMDHILRYQA-DPEVKMI 419 (806)
Q Consensus 363 ValvSQSG~l~~~l~~~~~~~g~G--~s~~vs~Gn~~~~d~--------------------~~~D~l~~l~~-Dp~Tk~I 419 (806)
||+++=+++..+. +.+.+.|+- .+..+..|-+ .+- .+.+.++.+.+ +|+..+|
T Consensus 125 IGILtt~~t~l~~--~~l~~~Gi~~~~~~~~~~g~e--~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daI 200 (245)
T PRK07475 125 VGILTADASSLTP--AHLLAVGVPPDTSSLPIAGLE--EGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAI 200 (245)
T ss_pred EEEEeCCchhhhH--HHHHhCCCCCCCccccccCcc--cchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 9999999986543 446666663 3333443433 111 23333444442 6677777
Q ss_pred EEEEccCCcch-HHHHHHHHhcCCCCCEEE
Q psy16953 420 VLLGEVGGVEE-YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 420 ~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~ 448 (806)
++ | -.| +.+.+++++. .++||+-
T Consensus 201 vL--~---CTeLp~~~~~le~~-~glPViD 224 (245)
T PRK07475 201 VL--E---CTNMPPYAAAIQRA-TGLPVFD 224 (245)
T ss_pred EE--c---CcChHHHHHHHHHh-cCCCEEe
Confidence 55 3 222 4455554442 4677764
No 451
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=25.91 E-value=1.1e+02 Score=32.77 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCCh-hhHHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSF-DTLGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~-~EL~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|+...--. .-|...+ ......+
T Consensus 92 ~~~kPvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l-------- 158 (261)
T PRK03580 92 DLDKPVIAAVNGYAFG-GGFELALAADFIVCADNAS----FALPEAKLGIVPDSGGVLRLPKRLPPAIANEM-------- 158 (261)
T ss_pred hCCCCEEEEECCeeeh-HHHHHHHHCCEEEecCCCE----EeCcccccCcCCCccHHHHHHHHhCHHHHHHH--------
Confidence 3789999999888874 2444444443333433322 2223344566432111 1111111 0111122
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
--...+++..+|++.|++
T Consensus 159 ----~l~g~~~~a~eA~~~Glv 176 (261)
T PRK03580 159 ----VMTGRRMDAEEALRWGIV 176 (261)
T ss_pred ----HHhCCccCHHHHHHcCCC
Confidence 124557888888888875
No 452
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=25.80 E-value=1.6e+02 Score=27.37 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
...+++++....+ ..||+++..+|...+++...|+.+++.++-.
T Consensus 22 ~~~v~~aik~gk~-~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~ 65 (104)
T PRK05583 22 YNKCEEAIKKKKV-YLIIISNDISENSKNKFKNYCNKYNIPYIEG 65 (104)
T ss_pred HHHHHHHHHcCCc-eEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe
Confidence 3456666664455 5778899999999999999999999887544
No 453
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=25.79 E-value=2.5e+02 Score=27.81 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=46.3
Q ss_pred eEEEEccChhH---HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC---CCeeEEE
Q psy16953 204 KAIVWGMQTRA---VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN---KDADVLV 276 (806)
Q Consensus 204 ~v~V~G~~~r~---~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~---~Dlaviv 276 (806)
+++|+|++... ++.|.+.|| .+.|-+-. ++.- .| +.+ ++|+|.+..+ +... .+..++
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~-------~vvgfid~-~~~~-----~~-~~i~g~pvlg~~~~-l~~~~~~~~~~ii- 64 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGW-------EIVGFLDD-NPAL-----QG-TSVDGLPVLGGDED-LLRYPPDEVDLVV- 64 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-------EEEEEEcC-Cccc-----cC-cccCCccEECCHHH-HhhhcccccEEEE-
Confidence 37899988643 556666665 33443321 1110 12 334 5899988776 4432 333333
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEc
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIA 304 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis 304 (806)
.+........+++.+...+++...++.
T Consensus 65 -ai~~~~~~~~i~~~l~~~g~~~~~~i~ 91 (201)
T TIGR03570 65 -AIGDNKLRRRLFEKLKAKGYRFATLIH 91 (201)
T ss_pred -EcCCHHHHHHHHHHHHhCCCcceEEec
Confidence 343455556777777767766555544
No 454
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.76 E-value=4.3e+02 Score=29.05 Aligned_cols=153 Identities=24% Similarity=0.318 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccC-CccEEEeCCcchHHHHHHHHhcCCCCCCCCCCCC
Q psy16953 111 FKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTL-GIPLFVFGPETHMTAIVGMALGKKEIPSETSADG 189 (806)
Q Consensus 111 ~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~-g~~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~ 189 (806)
..||..+-+++-+++.+.++.|..=|.=+- |+|++....=.. |=..|-|+=
T Consensus 106 lSGIAT~T~~~V~~~~~~~~~i~~TRKT~P---glR~leKyAV~~GGG~nHR~gL------------------------- 157 (280)
T COG0157 106 LSGIATATARMVEALRGTNVRIADTRKTTP---GLRLLEKYAVRAGGGDNHRFGL------------------------- 157 (280)
T ss_pred HhhHHHHHHHHHHHhhccCcEEEeccCCCc---cHHHHHHHHHHhcCCccccCCC-------------------------
Confidence 357878888887777778877766555444 677777653000 111222222
Q ss_pred CcccccCCCCCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccC
Q psy16953 190 ATANFLLPGGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKN 269 (806)
Q Consensus 190 ~~~~~~~~~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~ 269 (806)
...++ +..| -+++.|-=..+++++.++ .|.+++ =|+.+-.+..+.+|+...
T Consensus 158 -sDavl---iKDN-Hia~~g~i~~Av~~aR~~---------------~~~~~k---------IEVEvesle~~~eAl~ag 208 (280)
T COG0157 158 -SDAVL---IKDN-HIAAAGSITEAVRRARAA---------------APFTKK---------IEVEVESLEEAEEALEAG 208 (280)
T ss_pred -cceEE---ehhh-HHHHhccHHHHHHHHHHh---------------CCCCce---------EEEEcCCHHHHHHHHHcC
Confidence 11122 2233 344555223456666543 122222 256678888899999999
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+|+..+.||. .+.+..+++.+..++ +..+=.|+|+..+. +.++ .+.|+.+|
T Consensus 209 aDiImLDNm~--~e~~~~av~~l~~~~-~~~lEaSGgIt~~n---i~~y-A~tGVD~I 259 (280)
T COG0157 209 ADIIMLDNMS--PEELKEAVKLLGLAG-RALLEASGGITLEN---IREY-AETGVDVI 259 (280)
T ss_pred CCEEEecCCC--HHHHHHHHHHhccCC-ceEEEEeCCCCHHH---HHHH-hhcCCCEE
Confidence 9999998874 345666666654333 55666667886543 3334 34688887
No 455
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=25.64 E-value=8.2e+02 Score=28.68 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCCEEEE---eCChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 359 RPGSVAYV---SRSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 359 ~~G~Valv---SQSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
..|+.-++ +++...+..+...+.+.|+ |+=.+|. |.. +.-++|..+|+++.|.. .|+..- +.
T Consensus 168 aaGN~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~~v~-g~~--------~~~~~L~~~~~vd~V~f---TGS~~~g~~ 235 (488)
T PRK13252 168 AAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQ-GDG--------RVGAWLTEHPDIAKVSF---TGGVPTGKK 235 (488)
T ss_pred hcCCeEEEeCCccCcHHHHHHHHHHHHcCcCcccEEEEe-cCc--------HHHHHHhcCCCCCEEEE---ECcHHHHHH
Confidence 35666555 3333444555666677776 5566664 433 24477899999999987 556766 66
Q ss_pred HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--------CcccCCh-hhHHHHH
Q psy16953 433 VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--------AHVPSSF-DTLGDII 503 (806)
Q Consensus 433 f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--------vi~v~~~-~EL~~~~ 503 (806)
+.+.+.. .-||+++=-.|.++.+ -+.. +.-+.....+..++|..+| +++.++. +++.+.+
T Consensus 236 i~~~aa~--~l~~~~lElgG~~p~i-------V~~d--Adl~~A~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l 304 (488)
T PRK13252 236 VMAAAAA--SLKEVTMELGGKSPLI-------VFDD--ADLDRAADIAMLANFYSSGQVCTNGTRVFVQKSIKAAFEARL 304 (488)
T ss_pred HHHHHhh--cCCcEEEEcCCCCeeE-------ECCC--CCHHHHHHHHHHHHHhhcCCCCCCCeEEEEcHHHHHHHHHHH
Confidence 6655433 4688877777766642 1111 1112222234566777777 4444453 6676666
Q ss_pred HHHHHhh
Q psy16953 504 GSVYKDL 510 (806)
Q Consensus 504 ~all~~L 510 (806)
...+.++
T Consensus 305 ~~~~~~~ 311 (488)
T PRK13252 305 LERVERI 311 (488)
T ss_pred HHHHHhc
Confidence 6666655
No 456
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.54 E-value=2.4e+02 Score=29.85 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=54.3
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.++|.+. ...++|++.|+ + .-.++-.+++......+. +.. +...+.+..++ -...|+.++ +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~-------~-~~~i~v~~r~~~~~~~l~-~~~~~~~~~~~~~~~-~~~aDvVil---a 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA-------D-VSEIIVSPRNAQIAARLA-ERFPKVRIAKDNQAV-VDRSDVVFL---A 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-------C-hheEEEECCCHHHHHHHH-HHcCCceEeCCHHHH-HHhCCEEEE---E
Confidence 578899663 34678887775 0 112333343210000000 112 24567788884 445676555 5
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHH
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l 315 (806)
++++.+.++++++....=+.+|-+++|++-+..+++
T Consensus 69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~ 104 (258)
T PRK06476 69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW 104 (258)
T ss_pred eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH
Confidence 567788888887742222466777788876544443
No 457
>PRK08788 enoyl-CoA hydratase; Validated
Probab=25.42 E-value=2.1e+02 Score=31.34 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=44.2
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHH-HHHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDII-GSVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~-~all~~L~~~g~i~~ 518 (806)
...||||+..-|.+.. .|-.-+.++-=.++.++.- +..-.-+.|+...--.-. |...+ ......+
T Consensus 119 ~~pkPvIAaV~G~a~G-gG~~LalacD~ria~~~a~----f~~pev~lGl~p~~g~~~~l~~~vG~~~A~el-------- 185 (287)
T PRK08788 119 GAGAISIALVQGDALG-GGFEAALSHHTIIAERGAK----MGFPEILFNLFPGMGAYSFLARRVGPKLAEEL-------- 185 (287)
T ss_pred CCCCCEEEEECCeeeh-HHHHHHHhCCEEEecCCCE----eeCchhhhCcCCCchHHHHHHHHhhHHHHHHH--------
Confidence 4789999999999875 2555566655455544432 333334556532111111 11111 0111112
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=-...+++..+|++.|++
T Consensus 186 ----lltG~~l~A~eA~~~GLV 203 (287)
T PRK08788 186 ----ILSGKLYTAEELHDMGLV 203 (287)
T ss_pred ----HHcCCCCCHHHHHHCCCC
Confidence 235567888888888875
No 458
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=25.34 E-value=7.3e+02 Score=27.39 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcCcCc-------ccccccccCCcCC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCASMFT-------SEVQFGHAGSCAN 472 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~~~g-------~~aa~sHtGalag 472 (806)
...+++.+...++.+.|.+.+. .||.-+ .++.+++++ ...|+.++.....-+ .| .+-.++-.+.|.-
T Consensus 77 se~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~--~~~~v~v~VP~~A~S-AGTlIALaADeIvM~p~a~LGp 153 (285)
T PF01972_consen 77 SEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALRE--HPAKVTVIVPHYAMS-AGTLIALAADEIVMGPGAVLGP 153 (285)
T ss_pred HHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHh--CCCCEEEEECccccc-HHHHHHHhCCeEEECCCCccCC
Confidence 3467778888777777877777 788877 788889887 457888888765543 11 1122333333332
Q ss_pred CCc----ccHHHHHHHHHHcCCcccCC
Q psy16953 473 SDA----ETAVVKNKSLAQAGAHVPSS 495 (806)
Q Consensus 473 ~~~----~~a~~~~aa~~qaGvi~v~~ 495 (806)
-|. ..+..+-.++++.+.-.++|
T Consensus 154 iDPqi~~~pA~sil~~~~~K~~~~i~D 180 (285)
T PF01972_consen 154 IDPQIGQYPAASILKAVEQKPPDEIDD 180 (285)
T ss_pred CCccccCCChHHHHHHHHhccccccCH
Confidence 222 34566788888888665554
No 459
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=25.26 E-value=69 Score=33.77 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=44.5
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
.+++-+.-.| ...|+=.| . +.+++.|.+.|.+.+++-+++.=--+.+++++.|.++|+-|+|
T Consensus 153 lvK~~Kp~QD---~R~DlPtI-----G----~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~G 214 (214)
T PF06230_consen 153 LVKVPKPGQD---LRFDLPTI-----G----PDTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIVG 214 (214)
T ss_pred EEEccCCCCc---cccccccc-----C----HHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEeC
Confidence 3454444445 45666555 2 5578888889999888877654334678899999999999987
No 460
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=25.26 E-value=2e+02 Score=31.16 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=59.8
Q ss_pred EEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee---cccccccHHHHhcc--CCCeeEEE
Q psy16953 205 AIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV---LIPVYKKMEDAMSK--NKDADVLV 276 (806)
Q Consensus 205 v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i---~~p~y~sv~daip~--~~Dlaviv 276 (806)
+=++|++ .+.++++++.|. .--.|-+|+.. .+++ +...-.|+.+.+.+ .|-. +-
T Consensus 3 iGmiGLGrMG~n~v~rl~~~gh---------dvV~yD~n~~a-------v~~~~~~ga~~a~sl~el~~~L~~pr~--vW 64 (300)
T COG1023 3 IGMIGLGRMGANLVRRLLDGGH---------DVVGYDVNQTA-------VEELKDEGATGAASLDELVAKLSAPRI--VW 64 (300)
T ss_pred ceeeccchhhHHHHHHHHhCCC---------eEEEEcCCHHH-------HHHHHhcCCccccCHHHHHHhcCCCcE--EE
Confidence 3456644 456899999997 55678888864 1222 24444555543222 2322 22
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
+.+|....++++++++...==+.=+||-.|=+- ++..+-.+...++|+.++=..|.|.+
T Consensus 65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~ 124 (300)
T COG1023 65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGV 124 (300)
T ss_pred EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCc
Confidence 345555577788887753222233344444332 33333334445667777766555533
No 461
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.16 E-value=4.2e+02 Score=30.16 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=31.9
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC--CCC-C-EEEEEcCCCCH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF--PQI-R-SIAIIAEGIPE 309 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~--~gv-k-~~viis~Gf~E 309 (806)
+.+..++.+++ +.-|+.++ ++|.+.+.++++++.. .-- + .+|.++-|+..
T Consensus 81 i~~tsdl~eav-~~aDiIvl---AVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 81 IVAVSDLKEAV-EDADLLIF---VIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred eEEecCHHHHH-hcCCEEEE---EcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 34456677744 33455444 7788899999999874 111 2 46667889954
No 462
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=25.05 E-value=1.5e+02 Score=31.61 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=27.1
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi 491 (806)
...||||+..-|.+-. .|-.-+..+-=.++.++.. +..-.-+.|+.
T Consensus 91 ~~~kPvIaav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~ 136 (254)
T PRK08259 91 RLSKPVIAAVSGYAVA-GGLELALWCDLRVAEEDAV----FGVFCRRWGVP 136 (254)
T ss_pred cCCCCEEEEECCEEEh-HHHHHHHhCCEEEecCCCE----ecCcccccCCC
Confidence 4789999999998875 2444444444444444432 33334455654
No 463
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=24.95 E-value=1.1e+02 Score=34.23 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=38.7
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++|.+++. |++ +..+ ++.. ++.. ..-++ .|+||||-..-+. =+|....+.+|+++++++.
T Consensus 134 ~~~k~~l~~~GI--p~p-~~~~--~~~~---~~~~--~~~l~-~P~iVKP~~~gsS----~Gv~~v~~~~eL~~a~~~a 197 (343)
T PRK14568 134 SLAYIVAKNAGI--ATP-AFWT--VTAD---ERPD--AATLT-YPVFVKPARSGSS----FGVSKVNSADELDYAIESA 197 (343)
T ss_pred HHHHHHHHHcCc--CcC-CEEE--EECC---chhh--hhhcC-CCEEEEeCCCCCC----CCEEEeCCHHHHHHHHHHH
Confidence 456888888887 665 4333 2221 1111 11233 6999999876332 2455566889998888764
No 464
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=24.64 E-value=3.3e+02 Score=30.74 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=33.7
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC---CCCCEEEEEcCCCCHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF---PQIRSIAIIAEGIPEN 310 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~---~gvk~~viis~Gf~E~ 310 (806)
+.+..++.+++. ..|+.++ ++|.+.+.++++.+.. .+ +.+|.++-||-..
T Consensus 70 i~at~dl~eal~-~ADiIIl---AVPs~~i~~vl~~l~~~l~~~-~~iVs~tKGie~~ 122 (342)
T TIGR03376 70 LVAVPDLVEAAK-GADILVF---VIPHQFLEGICKQLKGHVKPN-ARAISCIKGLEVS 122 (342)
T ss_pred eEEECCHHHHHh-cCCEEEE---ECChHHHHHHHHHHHhhcCCC-CEEEEEeCCcccC
Confidence 446678888544 3465544 7788899998888752 22 3477778899553
No 465
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=24.61 E-value=1.1e+02 Score=37.82 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=62.3
Q ss_pred HHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE---------------ccCccccccCC--ccccccCCCCcc
Q psy16953 288 TIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII---------------GPATVGGLKPG--CFKIGNTGGMMD 350 (806)
Q Consensus 288 ~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii---------------GPN~~Gii~p~--~~~ig~~~g~~~ 350 (806)
+.|+. ..|..++.+|++=++++..++|.+.|++.||..+ |+.-+||-|-+ .+.+. +..
T Consensus 126 I~ea~-~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd----~~~ 200 (695)
T PRK13802 126 IWEAR-AHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVD----VNK 200 (695)
T ss_pred HHHHH-HcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeC----HHH
Confidence 34443 4889999999998888888889999999888776 88888877754 11111 111
Q ss_pred cccccCCCCCCCEEEEeCChhHHHHHHHHHHhcC
Q psy16953 351 NILHSKLYRPGSVAYVSRSGGMSNELNNIISKAT 384 (806)
Q Consensus 351 ~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g 384 (806)
+ .......|..+-+||-||--+.+=+..+.+.|
T Consensus 201 t-~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G 233 (695)
T PRK13802 201 Y-NELAADLPDDVIKVAESGVFGAVEVEDYARAG 233 (695)
T ss_pred H-HHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC
Confidence 1 00011345678999999988877777777655
No 466
>KOG2733|consensus
Probab=24.55 E-value=1e+02 Score=35.00 Aligned_cols=65 Identities=29% Similarity=0.385 Sum_probs=49.1
Q ss_pred ccHHHHhccCCCeeEEEeecCChhhH-HHHHHHhcCCCCCEEEEEcCCCCH---HHHHHHHHHHHHcCCeEEcc
Q psy16953 260 KKMEDAMSKNKDADVLVNFASLRSAY-DSTIETLGFPQIRSIAIIAEGIPE---NMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 260 ~sv~daip~~~Dlavivi~~~~~~~~-~~~le~~~~~gvk~~viis~Gf~E---~~~~~l~~~a~~~giriiGP 329 (806)
.|+.+ +... .-||+|++-|-.-. +.++++|.+.|...+=| +|-|+ ..|.+--+.|++.|+=|++.
T Consensus 75 ~Sl~e-mak~--~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 75 ASLDE-MAKQ--ARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred HHHHH-HHhh--hEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 45777 6665 46778877775333 78999999999998776 56565 67777788999999999864
No 467
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=24.39 E-value=5e+02 Score=23.80 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=44.9
Q ss_pred eEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCChh
Q psy16953 204 KAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRS 283 (806)
Q Consensus 204 ~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~~ 283 (806)
|++|+|- ...+-.+.-.|. +.+|+++.. + -....+.+ +-...|+++|++.=.-..
T Consensus 2 kIaVIGD-~dtv~GFrLaGi----------~~~~~~~~~---------e----e~~~~l~~-l~~~~d~gII~Ite~~~~ 56 (100)
T PRK02228 2 EIAVIGS-PEFTTGFRLAGI----------RKVYEVPDD---------E----KLDEAVEE-VLEDDDVGILVMHDDDLE 56 (100)
T ss_pred EEEEEeC-HHHHHHHHHcCC----------ceEEeeCCH---------H----HHHHHHHH-HhhCCCEEEEEEehhHhH
Confidence 6888887 334455555663 335666542 1 12334444 333568888855443344
Q ss_pred hHHHHHHH-hcCCCCCEEEEEcC
Q psy16953 284 AYDSTIET-LGFPQIRSIAIIAE 305 (806)
Q Consensus 284 ~~~~~le~-~~~~gvk~~viis~ 305 (806)
.+++.++. ..+.-.+.++.|.+
T Consensus 57 ~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 57 KLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred hhHHHHHHHHhcCCCCEEEEECC
Confidence 46666666 55567788888865
No 468
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.38 E-value=6e+02 Score=28.77 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=49.7
Q ss_pred CCCCCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeec-ccccc----cHHHHhccC
Q psy16953 198 GGQEQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL-IPVYK----KMEDAMSKN 269 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~-~p~y~----sv~daip~~ 269 (806)
...|..+|+|+|+++- ++|.....|. +|+.+..+..+... ..++| --++. +..+++++.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-----------~Via~~~~~~K~e~--a~~lGAd~~i~~~~~~~~~~~~~~ 229 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-----------EVIAITRSEEKLEL--AKKLGADHVINSSDSDALEAVKEI 229 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-----------eEEEEeCChHHHHH--HHHhCCcEEEEcCCchhhHHhHhh
Confidence 3558899999999964 3666666654 78877765321110 02233 22222 233335555
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCC
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQ 296 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~g 296 (806)
.|+ ++++++ ..+++..++.+...|
T Consensus 230 ~d~--ii~tv~-~~~~~~~l~~l~~~G 253 (339)
T COG1064 230 ADA--IIDTVG-PATLEPSLKALRRGG 253 (339)
T ss_pred CcE--EEECCC-hhhHHHHHHHHhcCC
Confidence 555 444776 888999999998544
No 469
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=24.24 E-value=9.3e+02 Score=26.04 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEE
Q psy16953 112 KGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFV 161 (806)
Q Consensus 112 ~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~ 161 (806)
+|+-.|+++....+...++.++++=.+.+.+++.+..+++-++-|+...+
T Consensus 21 ~g~~lAv~~inggi~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~vi 70 (333)
T cd06359 21 DGFQLALKQLGGKLGGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVT 70 (333)
T ss_pred HHHHHHHHHhCCccCCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEE
Confidence 46666666632223346777777777778888888888876555676544
No 470
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=24.19 E-value=2.2e+02 Score=32.49 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
...+.+++-|.+.++..++..++ . .+...+.+.+++.|+.++||+.
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e-~--~l~~~~~~~l~~~gi~~~g~~~ 96 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPE-A--PLVLGLVDALEEAGIPVFGPTK 96 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCc-h--HHHHHHHHHHHHCCCeEECCCH
Confidence 45777888888888876654322 1 2334566777888999999874
No 471
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=24.18 E-value=7.8e+02 Score=25.16 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhhh--cccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEe
Q psy16953 112 KGIVTALTEFQSKL--IEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVF 162 (806)
Q Consensus 112 ~gii~al~~~~~~~--~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~ 162 (806)
.|+-.++++..+.. ...++.++++-...+.++..+..++.-++ ++...+.
T Consensus 21 ~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~~~~~~~~~~~l~~~-~v~~iig 72 (298)
T cd06268 21 NGAELAVEEINAAGGILGRKIELVVEDTQGDPEAAAAAARELVDD-GVDAVIG 72 (298)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhC-CceEEEc
Confidence 36666666643321 23566677777777777777777766533 5655443
No 472
>KOG2774|consensus
Probab=24.02 E-value=6.6e+02 Score=27.18 Aligned_cols=191 Identities=14% Similarity=0.172 Sum_probs=102.4
Q ss_pred CCCCceEEEEccChh---HHHhhhhcccccccCCCcccceeE--eecCCCcccccccceee--cccccccHHHHhccCCC
Q psy16953 199 GQEQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVY--PFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSKNKD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iy--pvnp~~~~~~~~g~~~i--~~p~y~sv~daip~~~D 271 (806)
-++..+|++-|.-+. .+.+|+.+-| + + ..-|. -++|. +.+.-...-| .+--|+++.+.+-.+ -
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~y-----G-s-~~VILSDI~KPp--~~V~~~GPyIy~DILD~K~L~eIVVn~-R 110 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMY-----G-S-ECVILSDIVKPP--ANVTDVGPYIYLDILDQKSLEEIVVNK-R 110 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHh-----C-C-ccEehhhccCCc--hhhcccCCchhhhhhccccHHHhhccc-c
Confidence 456778988886544 4778887766 1 1 00111 12332 1111111222 266677777732211 1
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDN 351 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~ 351 (806)
++-++ ..-+.+-+.++.+|..++-+- -+-...+++.|+++++++.=|.++|-+-|...+ |
T Consensus 111 IdWL~-------HfSALLSAvGE~NVpLA~~VN----I~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPR-------N-- 170 (366)
T KOG2774|consen 111 IDWLV-------HFSALLSAVGETNVPLALQVN----IRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPR-------N-- 170 (366)
T ss_pred cceee-------eHHHHHHHhcccCCceeeeec----chhhhHHHHHHHHcCeeEeecccccccCCCCCC-------C--
Confidence 23331 345667777888888766432 122457889999999999999999998776211 1
Q ss_pred ccccC-CCCCCCEEEEeCChhHHHHHHHHHH--hcCC-----ceeEEEee----cCCCCCCCCHHHHHHHhhc-------
Q psy16953 352 ILHSK-LYRPGSVAYVSRSGGMSNELNNIIS--KATN-----GVYEGVAI----GGDRYPGTTFMDHILRYQA------- 412 (806)
Q Consensus 352 ~~~~~-~~~~G~ValvSQSG~l~~~l~~~~~--~~g~-----G~s~~vs~----Gn~~~~d~~~~D~l~~l~~------- 412 (806)
-.|.. .-+|-.|==||.- -.+++..-- +-|+ .|-..+|. |+. .|-..+-+-+.+.+
T Consensus 171 PTPdltIQRPRTIYGVSKV---HAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggt--tdya~A~f~~Al~~gk~tCyl 245 (366)
T KOG2774|consen 171 PTPDLTIQRPRTIYGVSKV---HAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGT--TDYAIAIFYDALQKGKHTCYL 245 (366)
T ss_pred CCCCeeeecCceeechhHH---HHHHHHHHHHhhcCccceecccCcccccCCCCCCc--chhHHHHHHHHHHcCCccccc
Confidence 12211 1245555445432 223332222 2233 34445555 333 44444444444422
Q ss_pred CCCccEEEEEEc
Q psy16953 413 DPEVKMIVLLGE 424 (806)
Q Consensus 413 Dp~Tk~I~ly~E 424 (806)
-|+|+.=++|.|
T Consensus 246 rpdtrlpmmy~~ 257 (366)
T KOG2774|consen 246 RPDTRLPMMYDT 257 (366)
T ss_pred CCCccCceeehH
Confidence 588999999999
No 473
>PRK08328 hypothetical protein; Provisional
Probab=23.92 E-value=3.9e+02 Score=28.17 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecc-c-cc---ccHHHHh
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLI-P-VY---KKMEDAM 266 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~-p-~y---~sv~dai 266 (806)
.+++|+|+|.++- .+++|...| .|+++-|.++.-+. +++-.+.+|. + +- ..+.+ +
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G----------vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~-~ 94 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG----------VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLER-F 94 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC----------CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHH-h
Confidence 5678999998853 488999988 68898887653110 0111112221 0 00 01222 1
Q ss_pred ccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 267 SKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 267 p~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.||+.|-. .+...-++-+++.- ++...++..+..+ + ....+.++|+++|+.++--.+.|+.
T Consensus 95 --np~v~v~~---~~~~~~~~~~~~~l-~~~D~Vid~~d~~-~-~r~~l~~~~~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 95 --NSDIKIET---FVGRLSEENIDEVL-KGVDVIVDCLDNF-E-TRYLLDDYAHKKGIPLVHGAVEGTY 155 (231)
T ss_pred --CCCCEEEE---EeccCCHHHHHHHH-hcCCEEEECCCCH-H-HHHHHHHHHHHcCCCEEEEeeccCE
Confidence 35555441 11111111222222 3455444444443 2 3445677899999999987777653
No 474
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.86 E-value=2.6e+02 Score=27.10 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=41.5
Q ss_pred cCccccccCccCceeecCCHHHHHHHHHHHcCCeeEEEEEeccccchh------hhhhhhhHHHHHHHHhhhhhcccCce
Q psy16953 58 PDQLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANFT------NVAATFKGIVTALTEFQSKLIEHKIS 131 (806)
Q Consensus 58 pd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~------~vA~~~~gii~al~~~~~~~~~~~~~ 131 (806)
|+..+--+|+.|-. .++..+.+++.+...-+++++..|.+.+. +..+.++.+++.+++ ...+.+
T Consensus 20 ~~~~v~n~g~~G~~-----~~~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~-----~~~~~~ 89 (169)
T cd01828 20 PDVKVANRGISGDT-----TRGLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRK-----HFPNIK 89 (169)
T ss_pred CCCceEecCccccc-----HHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHH-----HCCCCe
Confidence 34555567777763 45666777766644448888888887762 333334455555554 236777
Q ss_pred EEEE
Q psy16953 132 IFVR 135 (806)
Q Consensus 132 ivvR 135 (806)
|++-
T Consensus 90 vi~~ 93 (169)
T cd01828 90 IVVQ 93 (169)
T ss_pred EEEE
Confidence 7774
No 475
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=23.80 E-value=67 Score=29.71 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=42.3
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CC-CHHHHHHHHHHHHHcCCeEE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GI-PENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf-~E~~~~~l~~~a~~~girii 327 (806)
...+.++.+ +-+.++.+|+|= +.+...+.+.++.+-++|+. +|..+- .+ ++..-++|.++|+++|.++.
T Consensus 45 ~~~~~~~~~-~~~~~~~dvvVE-~t~~~~~~~~~~~~L~~G~~-VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 45 EAFTTDLEE-LIDDPDIDVVVE-CTSSEAVAEYYEKALERGKH-VVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp SCEESSHHH-HHTHTT-SEEEE--SSCHHHHHHHHHHHHTTCE-EEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred ccccCCHHH-HhcCcCCCEEEE-CCCchHHHHHHHHHHHCCCe-EEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 567788888 555223344433 45666677766666668876 443332 23 33577899999999998875
No 476
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=23.66 E-value=5.8e+02 Score=28.14 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEE-EEEEc--cCCcch-HHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMI-VLLGE--VGGVEE-YEV 433 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I-~ly~E--igg~~d-~~f 433 (806)
..+|.--+|...|..+..+...+...|.-+.. |....+ -.++..++.+.+.++++++.| +.+.| .|..-+ .++
T Consensus 77 ~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i 153 (368)
T PRK13479 77 VPRDGKVLVPDNGAYGARIAQIAEYLGIAHVV-LDTGED--EPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEI 153 (368)
T ss_pred cCCCCeEEEEeCCchHHHHHHHHHHcCCcEEE-EECCCC--CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHH
Confidence 45666666767788777655666777776554 444433 357788888888877888755 45665 344455 677
Q ss_pred HHHHHhcCCCCCEEE
Q psy16953 434 CAALKDKRITKPLVA 448 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~ 448 (806)
.+.+++ .+.+||+
T Consensus 154 ~~l~~~--~~~~liv 166 (368)
T PRK13479 154 AAVAKR--HGKRLIV 166 (368)
T ss_pred HHHHHH--cCCEEEE
Confidence 777776 3455444
No 477
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=23.65 E-value=2.9e+02 Score=26.12 Aligned_cols=116 Identities=11% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCccc------ccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK------FYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~------~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
++.+|+|+|.++ ..+++|...| .|++..+-++.-+. +++..+.+|.+--..+++.+. -.|
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~G----------v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np 70 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSG----------VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP 70 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHT----------TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhC----------CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC
Confidence 367999999875 3588998888 57777777653100 111222333221112222222 246
Q ss_pred CeeEEEeecCC-hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 271 DADVLVNFASL-RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 271 Dlavivi~~~~-~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
++.+..+.... .......++ +...++..+.- ......|.++|+++++.++=-++.|
T Consensus 71 ~~~v~~~~~~~~~~~~~~~~~-----~~d~vi~~~d~--~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 71 DVEVEAIPEKIDEENIEELLK-----DYDIVIDCVDS--LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp TSEEEEEESHCSHHHHHHHHH-----TSSEEEEESSS--HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred ceeeeeeeccccccccccccc-----CCCEEEEecCC--HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 66665222211 122233332 34444443333 3455678889999999888655444
No 478
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=23.61 E-value=3e+02 Score=28.85 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=60.4
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcc------cccccceeecccccccHHHHhc-cCC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL------KFYWGHKEVLIPVYKKMEDAMS-KNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~------~~~~g~~~i~~p~y~sv~daip-~~~ 270 (806)
.+++|+|+|.++- .+++|...| .|.++.+-++.-+ -+++..+.+|.+--..+.+.+. -.|
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G----------vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG----------VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP 89 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC----------CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence 5779999998853 588999999 5788888665210 0111112333111111111122 135
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
++.+-. .+......-+++.- .++. +||.+..-+ .....+.++|+++++.++--.+.|
T Consensus 90 ~~~i~~---~~~~i~~~~~~~~~-~~~D-vVi~~~d~~-~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 90 DVEIEA---YNERLDAENAEELI-AGYD-LVLDCTDNF-ATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred CCEEEE---ecceeCHHHHHHHH-hCCC-EEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 554441 12111112222222 3344 444454433 344568889999999887666655
No 479
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=23.43 E-value=9.6e+02 Score=25.90 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC-cchHHHHHHHHhcCCCCC
Q psy16953 113 GIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP-ETHMTAIVGMALGKKEIP 182 (806)
Q Consensus 113 gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~-~~~m~~~~~~a~~~~~~~ 182 (806)
|+--|+++.-..+...++.++++=.+.+.+++.+..+++-++-++.+. +++ .+..+.++....+...+|
T Consensus 23 g~~la~~~iNggi~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~av-iG~~~s~~~~a~~~~~~~~~vp 92 (334)
T cd06327 23 AAELAVEDFGGGVLGRPIELVVADHQNKADVAAAKAREWIDRDGVDMI-VGGPNSAVALAVQEVAREKKKI 92 (334)
T ss_pred HHHHHHHHhcCCccCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEE-ECCccHHHHHHHHHHHHHhCce
Confidence 555555553211224678888888888888888888887655567654 444 233444444444443433
No 480
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.38 E-value=9.9e+02 Score=26.07 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhh--hcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC-cchHHHHHHHHhcCCCCCCC
Q psy16953 112 KGIVTALTEFQSK--LIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP-ETHMTAIVGMALGKKEIPSE 184 (806)
Q Consensus 112 ~gii~al~~~~~~--~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~-~~~m~~~~~~a~~~~~~~~~ 184 (806)
+|+-.|+++.-.. +...++.++++=.+.+.+.+.+..+++-++-|+.. ++|+ .+....++...++...+|--
T Consensus 21 ~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~a-iiG~~~s~~~~a~~~~~~~~~vp~i 95 (347)
T cd06335 21 RGARLAIDEINAAGGVLGRKLELVERDDRGNPARGLQNAQELAADEKVVA-VLGGLHTPVALANLEFIQQNKIPLI 95 (347)
T ss_pred HHHHHHHHHHHhcCCcCCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEE-EEcCCCCHHHHhhhHHHHhcCCcEE
Confidence 3566666664333 23467889999999989999999999877667754 4454 34455555555555555544
No 481
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=23.35 E-value=5.6e+02 Score=25.54 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=51.9
Q ss_pred EEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcC
Q psy16953 363 VAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKR 441 (806)
Q Consensus 363 ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~ 441 (806)
+=+..-.|+++..+..++.+++ -.++|=+|-.....-...+.++.+.+. ..++..+-.. +.| ..+.+++.+..
T Consensus 3 ylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~~-g~~v~~~~~D---v~d~~~v~~~~~~~~ 76 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELESA-GARVEYVQCD---VTDPEAVAAALAQLR 76 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHHT-T-EEEEEE-----TTSHHHHHHHHHTSH
T ss_pred EEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHhC-CCceeeeccC---ccCHHHHHHHHHHHH
Confidence 3455568999999999999977 667777777622345566788888876 4555554444 555 55666665543
Q ss_pred -CCCCE--EEEEeCcCc
Q psy16953 442 -ITKPL--VAWCIGTCA 455 (806)
Q Consensus 442 -~~KPV--V~lk~Grs~ 455 (806)
...|| |+..+|...
T Consensus 77 ~~~~~i~gVih~ag~~~ 93 (181)
T PF08659_consen 77 QRFGPIDGVIHAAGVLA 93 (181)
T ss_dssp TTSS-EEEEEE------
T ss_pred hccCCcceeeeeeeeec
Confidence 44687 777666644
No 482
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=23.35 E-value=2e+02 Score=33.21 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhh
Q psy16953 437 LKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 437 ~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L 510 (806)
-|-...+||.-+||==+-.. -++...+-.=+.-+|.++|. .-+. +|-.++|||+....-+..++
T Consensus 297 ~r~g~~~~~f~~~kfRsM~~--~ae~~~~~~~~~~~D~Rit~--vG~~------lR~~~ldelpq~~nvl~g~m 360 (445)
T TIGR03025 297 ERVGLNGRPFTVYKFRSMRV--DAEEGGGPQQATKNDPRITR--VGRF------LRRTSLDELPQLFNVLKGDM 360 (445)
T ss_pred eeeccCCeEEEEEEecCCCc--CccccccccccCCCCCCcCH--HHHH------HHhcCHHHHHHHHHHhcCce
Confidence 34445789999999633222 11211111123445666543 3334 44578899998876555544
No 483
>PRK06683 hypothetical protein; Provisional
Probab=23.27 E-value=2.1e+02 Score=25.44 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
...+++++....+ ..|++++..++...+.+...|+.+++.++
T Consensus 16 ~~~v~kaik~gka-klViiA~Da~~~~~~~i~~~~~~~~Vpv~ 57 (82)
T PRK06683 16 HKRTLEAIKNGIV-KEVVIAEDADMRLTHVIIRTALQHNIPIT 57 (82)
T ss_pred HHHHHHHHHcCCe-eEEEEECCCCHHHHHHHHHHHHhcCCCEE
Confidence 3566777764444 47778999999999999999999999884
No 484
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=23.24 E-value=6.5e+02 Score=29.29 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCC--ceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCCCCEEEE
Q psy16953 373 SNELNNIISKATN--GVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 373 ~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~l 449 (806)
+..+.+.+.+.|+ |+-.+|.-.+. +.-+.|.++|+++.|... |+.+- +.+.+.+.. .-||+++=
T Consensus 176 ~~~l~~~~~~aglP~gv~~~v~g~~~--------~~~~~L~~~~~v~~V~fT---Gs~~~g~~v~~~a~~--~l~~~~lE 242 (467)
T TIGR01804 176 ALKVAELMEEAGLPDGVFNVVLGKGA--------EVGEPLVNHKDVAKVSFT---GGVPTGKKIMAAAAD--HLKHVTME 242 (467)
T ss_pred HHHHHHHHHHcCcCcCcEEEEeCCcH--------HHHHHHhcCCCCCEEEEE---CcHHHHHHHHHHHHh--cCCcEEEe
Confidence 3345556667776 66666652223 455778999999999884 46666 666665432 45788777
Q ss_pred EeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC--------CcccCCh-hhHHHHHHHHHHhh
Q psy16953 450 CIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG--------AHVPSSF-DTLGDIIGSVYKDL 510 (806)
Q Consensus 450 k~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG--------vi~v~~~-~EL~~~~~all~~L 510 (806)
-.|.++.+. +.. +.-+..-..+..++|..+| +++.++. +++.+.+...+.++
T Consensus 243 lGG~~~~iV-------~~d--ADl~~Aa~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~ 303 (467)
T TIGR01804 243 LGGKSPLIV-------FDD--ADLELAVDQAMNGNFFSAGQVCSNGTRVFVHNKIKEKFEARLVERTKRI 303 (467)
T ss_pred cCCCCeeEE-------CCC--CCHHHHHHHHHHHHHHhcCCCCCCCCEEEEcHHHHHHHHHHHHHHHHhC
Confidence 667666421 110 1111122234677777787 4555554 66666666666555
No 485
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=23.21 E-value=7e+02 Score=27.21 Aligned_cols=62 Identities=18% Similarity=0.054 Sum_probs=37.5
Q ss_pred HHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC---CH-------------HHHHHHHHHHHH-cCC
Q psy16953 262 MEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI---PE-------------NMTRKLNLLAKE-KGV 324 (806)
Q Consensus 262 v~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf---~E-------------~~~~~l~~~a~~-~gi 324 (806)
+.+.+....|+.|. ++-.......+.+.|.+.+++.+.+-..|= |. .+.+.+++..|+ +|+
T Consensus 114 ~~~ll~~~~D~VId--aiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t~~~pla~~~R~~lr~~~~~ 191 (268)
T PRK15116 114 VAEYMSAGFSYVID--AIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLKSDFGV 191 (268)
T ss_pred HHHHhcCCCCEEEE--cCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeecccCChHHHHHHHHHHHhhCC
Confidence 33433344665443 333435566788889888998765543331 22 467888888887 677
Q ss_pred e
Q psy16953 325 S 325 (806)
Q Consensus 325 r 325 (806)
+
T Consensus 192 ~ 192 (268)
T PRK15116 192 V 192 (268)
T ss_pred C
Confidence 4
No 486
>PRK06186 hypothetical protein; Validated
Probab=23.06 E-value=1.2e+02 Score=32.44 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=45.2
Q ss_pred ccccccHHHHhcc-----CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH---HHHHHHHHHHHHcCCeEE
Q psy16953 256 IPVYKKMEDAMSK-----NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE---NMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 256 ~p~y~sv~daip~-----~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E---~~~~~l~~~a~~~girii 327 (806)
..+|.|+-+|+.. ..++.+. .+.+. .+++- +.+ +++.+++ +..||+. +-.-..++.||++++.++
T Consensus 14 ~daY~Sv~eal~ha~~~~~~~~~i~--wi~s~-~l~~~-~~l--~~~dgil-vpgGfg~rg~~Gki~ai~~Are~~iP~L 86 (229)
T PRK06186 14 VTAHQAIPLALDLAAAVLGLPVDYE--WLPTP-EITDP-EDL--AGFDGIW-CVPGSPYRNDDGALTAIRFARENGIPFL 86 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCeeEEE--EEchh-hcCCh-hhH--hhCCeeE-eCCCCCcccHhHHHHHHHHHHHcCCCeE
Confidence 5799999998654 3445554 44333 33211 111 3455555 5788988 344566789999999999
Q ss_pred ccCccccc
Q psy16953 328 GPATVGGL 335 (806)
Q Consensus 328 GPN~~Gii 335 (806)
|= |+|+-
T Consensus 87 GI-ClGmQ 93 (229)
T PRK06186 87 GT-CGGFQ 93 (229)
T ss_pred ee-chhhH
Confidence 85 66643
No 487
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.05 E-value=9.8e+02 Score=25.89 Aligned_cols=187 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred hHHHHHHHHhhhh--hcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCc-chHHHHHHHHhcCCCCCCCCCCC
Q psy16953 112 KGIVTALTEFQSK--LIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPE-THMTAIVGMALGKKEIPSETSAD 188 (806)
Q Consensus 112 ~gii~al~~~~~~--~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~-~~m~~~~~~a~~~~~~~~~~~~~ 188 (806)
+|+--|+++.-.. +...++.++++=.+.+.+++.+..+++-++-++. -++++- +....++....+...+|--.+..
T Consensus 21 ~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~-~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 99 (344)
T cd06348 21 AGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAINAFQTLINKDRVL-AIIGPTLSQQAFAADPIAERAGVPVVGPSN 99 (344)
T ss_pred HHHHHHHHHHhhcCCcCCcEEEEEEecCCCChHHHHHHHHHHhhhcCce-EEECCCCcHHHHhhhHHHHhCCCCEEeccC
Confidence 3555566553321 1246788888888888889888888886665664 445552 22333443333333333322211
Q ss_pred CCcccccCCCCCCCceEEEEccCh-----hHHHhhhhc--ccccccCCCcccceeEeecCCCcccccccceeeccccccc
Q psy16953 189 GATANFLLPGGQEQTKAIVWGMQT-----RAVQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKK 261 (806)
Q Consensus 189 ~~~~~~~~~~~~~~t~v~V~G~~~-----r~~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~s 261 (806)
+...+ +. ...-..-.+... ..+..+++. |. -+++.+.+.. .-|| ......
T Consensus 100 --~~~~~-~~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~l~~~~---~~~g-----~~~~~~ 156 (344)
T cd06348 100 --TAKGI-PE--IGPYVFRVSAPEAVVAPAAIAAALKLNPGI----------KRVAVFYAQD---DAFS-----VSETEI 156 (344)
T ss_pred --CCCCc-CC--CCCeEEEccCcHHHHHHHHHHHHHHHhcCC----------eEEEEEEeCC---chHH-----HHHHHH
Confidence 11111 00 001111112111 123344332 31 1344443220 0022 233344
Q ss_pred HHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 262 MEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 262 v~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
+.+++.+ ..+++-...+-.........+..+.+.+...+++... ++ ....+.+.+++.|+.
T Consensus 157 ~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~--~~-~~~~~~~~~~~~g~~ 218 (344)
T cd06348 157 FQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISAL--AA-DGGNLVRQLRELGYN 218 (344)
T ss_pred HHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCc--ch-hHHHHHHHHHHcCCC
Confidence 4443332 3444332222233445667788887788886655443 32 445677777887764
No 488
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.02 E-value=3e+02 Score=29.66 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=35.3
Q ss_pred CceEEEEccC-----hhHHHhhhhcccccccCCCcccceeEeecCCCc-ccccc----cceee-c-ccccccHHHHhc
Q psy16953 202 QTKAIVWGMQ-----TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK-LKFYW----GHKEV-L-IPVYKKMEDAMS 267 (806)
Q Consensus 202 ~t~v~V~G~~-----~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~-~~~~~----g~~~i-~-~p~y~sv~daip 267 (806)
+-+|+++..+ |.+.+.|..+|+ -+++.|||+.. .+..| |..+| . -++|+|+++||.
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl----------~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~ 71 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGL----------SELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA 71 (242)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHhCCc----------ceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc
Confidence 3456666654 234788999996 37999999863 12221 33444 3 777777777655
No 489
>PLN02409 serine--glyoxylate aminotransaminase
Probab=23.00 E-value=5.1e+02 Score=29.40 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=51.7
Q ss_pred CCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCC--CccEEEE-EEc--cCCcch-
Q psy16953 357 LYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP--EVKMIVL-LGE--VGGVEE- 430 (806)
Q Consensus 357 ~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp--~Tk~I~l-y~E--igg~~d- 430 (806)
...||.--+++..|..+......+++.|.-+.. +....+ ..++..++-+.+.+|+ +||+|++ +.| .|-+-+
T Consensus 80 ~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~-v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~ 156 (401)
T PLN02409 80 TLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDV-VESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDL 156 (401)
T ss_pred cCCCCCEEEEeCCCchhHHHHHHHHHcCCceEE-EECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCH
Confidence 367898888888898887666667777765443 344333 3467888878887764 7897665 455 555556
Q ss_pred HHHHHH
Q psy16953 431 YEVCAA 436 (806)
Q Consensus 431 ~~f~~a 436 (806)
+++.+.
T Consensus 157 ~~i~~l 162 (401)
T PLN02409 157 AGVRKL 162 (401)
T ss_pred HHHHHH
Confidence 666666
No 490
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=22.95 E-value=1.5e+03 Score=27.88 Aligned_cols=218 Identities=11% Similarity=0.088 Sum_probs=117.2
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHH-cCCeEEc----c
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKE-KGVSIIG----P 329 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~-~giriiG----P 329 (806)
|+.+..++++ +|+. + .|+ ..+.-..+++.+.+.++|++- +=-|.-|=-..++.+.+++++ +-+-++| |
T Consensus 53 Gv~~v~~~~~-~~~~-~-~vi---i~aHG~~~~~~~~~~~~~~~v-iDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~Hp 125 (647)
T PRK00087 53 GIKPIEDIDE-LNEG-D-TII---IRSHGVPPEVLEELKDKGLKV-IDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHP 125 (647)
T ss_pred CCEEeCCHhh-CCCC-C-EEE---EeCCCCCHHHHHHHHHCCCeE-EECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 4555566778 6743 2 333 345566788899998899873 323334444677777777776 4578888 6
Q ss_pred CccccccCCccccccCCCCccccccc-CCCCCCCEEEEeCChh---HHHHHHHHHHhcCCceeEEEeecCC-CCCCCCHH
Q psy16953 330 ATVGGLKPGCFKIGNTGGMMDNILHS-KLYRPGSVAYVSRSGG---MSNELNNIISKATNGVYEGVAIGGD-RYPGTTFM 404 (806)
Q Consensus 330 N~~Gii~p~~~~ig~~~g~~~~~~~~-~~~~~G~ValvSQSG~---l~~~l~~~~~~~g~G~s~~vs~Gn~-~~~d~~~~ 404 (806)
...|+..-..-. .-+..+.-.. ....+.+++++||.-- -..++.+.+.++.-.+.. =|. +++-.+=.
T Consensus 126 Ev~g~~g~~~~~----~~vv~~~~~~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~----~~tiC~at~~Rq 197 (647)
T PRK00087 126 EVIGINGWCNNS----AIIVEDGEEAEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKV----FNTICNATEVRQ 197 (647)
T ss_pred eeeeeccccCCC----EEEECCHHHHhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc----CCCcchhhhhHH
Confidence 666665432100 0000000000 1123578999998643 344466666664432211 132 22333333
Q ss_pred HHHHHhhcCCCccEEEEEEccCCcc--h-HHHHHHHHhcC-----------------CCCCEEEEEeCcCcCcCcccccc
Q psy16953 405 DHILRYQADPEVKMIVLLGEVGGVE--E-YEVCAALKDKR-----------------ITKPLVAWCIGTCASMFTSEVQF 464 (806)
Q Consensus 405 D~l~~l~~Dp~Tk~I~ly~Eigg~~--d-~~f~~a~r~~~-----------------~~KPVV~lk~Grs~~~~g~~aa~ 464 (806)
+.+.-|+ .++.++++ +||-. | .++++.+++.. .++..|.+.+|.|.+
T Consensus 198 ~a~~~la--~~~d~~~v---vGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP-------- 264 (647)
T PRK00087 198 EAAEKLA--KKVDVMIV---VGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTP-------- 264 (647)
T ss_pred HHHHHHH--hhCCEEEE---ECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCC--------
Confidence 4444454 35777766 45554 3 78888877631 123345555555554
Q ss_pred cccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhh
Q psy16953 465 GHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 465 sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L 510 (806)
+.. .......+++.|=+.-.+.+|+..........+
T Consensus 265 ---------~~~-i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 300 (647)
T PRK00087 265 ---------DWI-IEEVIKKMSELDNMEEVEENEQLEYMNELEKQI 300 (647)
T ss_pred ---------HHH-HHHHHHHHHHhccccccCHHHHHHHHHHHHhhc
Confidence 211 122445556665555577788887666555554
No 491
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=1.2e+02 Score=34.26 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=45.0
Q ss_pred hccCCCeeEEEeecCChhhH-HHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 266 MSKNKDADVLVNFASLRSAY-DSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 266 ip~~~Dlavivi~~~~~~~~-~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
+-+.. .|+++++-|-..+ ..++++|...|+..+=|-.+ -|-|...+.--+.|++.|+||| +|.||=
T Consensus 68 ~~~~~--~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFD 135 (382)
T COG3268 68 MASRT--QVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARII--PGCGFD 135 (382)
T ss_pred HHhcc--eEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEe--ccCCCC
Confidence 55554 5566677665444 67999999999998876333 2333444444778999999998 666763
No 492
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.92 E-value=1.4e+03 Score=27.57 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=78.0
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch--HHHHHHHH
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE--YEVCAALK 438 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d--~~f~~a~r 438 (806)
..-=+++=+|.-.........-. .-.+++..|+-.-.+..+.-.+-.=...|+-++|++-+. |++-= .++..+.|
T Consensus 374 ~daiv~~d~G~~~~w~a~~~~~~--~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GD-G~F~m~~qEL~Ta~r 450 (550)
T COG0028 374 DDAIVVTDVGQHQMWAARYFDFY--RPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGD-GGFMMNGQELETAVR 450 (550)
T ss_pred CCeEEEeCCcHHHHHHHHhcccC--CCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcc-cHHhccHHHHHHHHH
Confidence 35556666666554332222222 122444444432257777777777788899999999887 44432 55555553
Q ss_pred hcCCCCCEEEEEeCcCcC-cCcccccccccCCcCCCCcccHHHHHHHHHHcCC--cccCChhhHHHHHHHHHHh
Q psy16953 439 DKRITKPLVAWCIGTCAS-MFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA--HVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~-~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv--i~v~~~~EL~~~~~all~~ 509 (806)
.+.||+++.-.-..- +.-.....-.-....+.+..... |.+..+..|+ .++++.+||-+.++..+..
T Consensus 451 ---~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~-f~klAea~G~~g~~v~~~~el~~al~~al~~ 520 (550)
T COG0028 451 ---YGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPD-FVKLAEAYGAKGIRVETPEELEEALEEALAS 520 (550)
T ss_pred ---hCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCcc-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhC
Confidence 456887666433221 00001111111111222332222 7788888887 7889999998888766543
No 493
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=22.82 E-value=2.1e+02 Score=30.84 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=48.5
Q ss_pred eEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeec-ccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL-IPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~-~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+ +.....|.+.|+ .|+-++++...... ..+.+ +....+..+++ ...|+.++ +
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-----------~V~~~d~~~~~~~~--a~~~g~~~~~~~~~~~~-~~aDlVil---a 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-----------TVYGVSRRESTCER--AIERGLVDEASTDLSLL-KDCDLVIL---A 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-----------EEEEEECCHHHHHH--HHHCCCcccccCCHhHh-cCCCEEEE---c
Confidence 68889865 334667777776 46666554210000 00112 22232222322 45676555 6
Q ss_pred CChhhHHHHHHHhcCC-CCCEEEEEcCCCCHHHHHH
Q psy16953 280 SLRSAYDSTIETLGFP-QIRSIAIIAEGIPENMTRK 314 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~~~~~ 314 (806)
+|...+..+++++... .-+.+++-++++.....++
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~ 100 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEA 100 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHH
Confidence 6777777778777532 2345565566676544333
No 494
>KOG2012|consensus
Probab=22.77 E-value=1.4e+02 Score=37.47 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc------ccccccceeec----ccccccHHHHhc
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK------LKFYWGHKEVL----IPVYKKMEDAMS 267 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~------~~~~~g~~~i~----~p~y~sv~daip 267 (806)
..++|+|.|+++- ..+|++-.| ...|+.--|+.- .-||+-.+.|| --++..+++ +.
T Consensus 36 ~~S~VLisGl~GLGvEIAKNliLaG----------VksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~Lae-LN 104 (1013)
T KOG2012|consen 36 QGSNVLISGLQGLGVEIAKNLILAG----------VKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAE-LN 104 (1013)
T ss_pred hhCcEEEecCCcccHHHHhhHhhhc----------cceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHH-hh
Confidence 4568999998864 578998888 455665555421 11233333454 235666677 66
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCC
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGG 347 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g 347 (806)
.-+++.++ ..+- ..+.+ .+-+ +|++++ .+-..|.++-+.|+++|+++|+..+=|++.--=+.+| ..
T Consensus 105 ~yV~V~v~---t~~~--~~e~L-----~~Fq-vVVlt~-~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG--~e 170 (1013)
T KOG2012|consen 105 NYVPVVVL---TGPL--TEEFL-----SDFQ-VVVLTD-ASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFG--EE 170 (1013)
T ss_pred cceeeEEe---cCcc--cHHHH-----hCCc-EEEEec-CchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCC--Cc
Confidence 66544444 2121 12222 3344 444443 2336788999999999999999999998764323344 12
Q ss_pred CcccccccCCCCCCCEEEEeCC
Q psy16953 348 MMDNILHSKLYRPGSVAYVSRS 369 (806)
Q Consensus 348 ~~~~~~~~~~~~~G~ValvSQS 369 (806)
+...-.....+..|-|+=|||-
T Consensus 171 F~v~D~tGeeP~t~mI~~Is~d 192 (1013)
T KOG2012|consen 171 FTVLDPTGEEPLTGMIASISQD 192 (1013)
T ss_pred eEEeCCCCCcchhhHHhhccCC
Confidence 1111112234556667777776
No 495
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=22.74 E-value=1.9e+02 Score=28.96 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=44.5
Q ss_pred EEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 390 GVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 390 ~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.|.++++ .+- .+..-|.++..|+.++.|.+|+. .||.-+ ....+.++. .++||+++..|.+..
T Consensus 11 ~i~i~g~--I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~--~~~~v~t~~~g~aaS 80 (171)
T cd07017 11 IIFLGGP--IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQY--IKPPVSTICLGLAAS 80 (171)
T ss_pred EEEEcCE--EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHh--cCCCEEEEEEeEehh
Confidence 4555665 222 24556777888888999999999 555433 556777776 468999999888775
No 496
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.73 E-value=1.5e+02 Score=26.89 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+... .+++..+..++++++| +++|.. ..+++++.|++.++.|+-
T Consensus 47 ~gdR-~di~~~a~~~~i~~iI-ltg~~~--~~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 47 PGDR-EDIQLAAIEAGIACII-LTGGLE--PSEEVLELAKELGIPVIS 90 (105)
T ss_dssp ETT--HHHHHHHCCTTECEEE-EETT------HHHHHHHHHHT-EEEE
T ss_pred eCCc-HHHHHHHHHhCCCEEE-EeCCCC--CCHHHHHHHHHCCCEEEE
Confidence 4444 4455555558887555 577664 456778889999988774
No 497
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.72 E-value=3.7e+02 Score=28.08 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=26.6
Q ss_pred hcCCCCCEEEEEcCC-CCHHHHHHHHHHHHHcCCeEEccCccccccC
Q psy16953 292 LGFPQIRSIAIIAEG-IPENMTRKLNLLAKEKGVSIIGPATVGGLKP 337 (806)
Q Consensus 292 ~~~~gvk~~viis~G-f~E~~~~~l~~~a~~~giriiGPN~~Gii~p 337 (806)
|-+.+.+.+++.+.- .....++-+..+ ++.|..|++|.+ |+++.
T Consensus 126 ~L~~~~pvvi~P~~m~~~~~~~~nl~~L-~~~G~~ii~P~~-g~y~~ 170 (204)
T PRK05920 126 VLKERRKLILVPRETPLSLIHLENMLKL-AEAGAIILPAIP-AFYHK 170 (204)
T ss_pred HHhcCCCEEEEeCCCCCCHHHHHHHHHH-HHCCCEEeCCcc-cccCC
Confidence 444677877776532 122344444444 677999999974 66553
No 498
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=22.66 E-value=1.6e+02 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.9
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|-+-.
T Consensus 96 ~~~kPvIAav~G~a~G 111 (257)
T COG1024 96 DLPKPVIAAVNGYALG 111 (257)
T ss_pred hCCCCEEEEEcceEee
Confidence 3789999998877664
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.64 E-value=6e+02 Score=26.97 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred CCCceEEEEccChhH---HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEE
Q psy16953 200 QEQTKAIVWGMQTRA---VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~---~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
.++.+|+|+|-+.-+ ++.|+++| +.|+-|.|.-. +.+.+ +.....+..+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~g-----------A~VtVVap~i~---------------~el~~-l~~~~~i~~~- 74 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKG-----------CYVYILSKKFS---------------KEFLD-LKKYGNLKLI- 74 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-----------CEEEEEcCCCC---------------HHHHH-HHhCCCEEEE-
Confidence 367799999988654 66888865 58999998631 22333 3333334444
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
.+..-+. ++ .|. ..|+.+.+ .++.-+++.+.|++.++-+.
T Consensus 75 ----~r~~~~~---dl--~g~-~LViaATd-D~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 75 ----KGNYDKE---FI--KDK-HLIVIATD-DEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred ----eCCCChH---Hh--CCC-cEEEECCC-CHHHHHHHHHHHHHcCCeEE
Confidence 2211122 22 233 34555544 44677788889998876554
No 500
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.63 E-value=6.8e+02 Score=28.90 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=87.7
Q ss_pred ecCChhhHHHHHHHh-cCCCCCEEEEEcCCCCH---HHHHHHHHHHHHc-----CCeEEccCccccccCCccccccC---
Q psy16953 278 FASLRSAYDSTIETL-GFPQIRSIAIIAEGIPE---NMTRKLNLLAKEK-----GVSIIGPATVGGLKPGCFKIGNT--- 345 (806)
Q Consensus 278 ~~~~~~~~~~~le~~-~~~gvk~~viis~Gf~E---~~~~~l~~~a~~~-----giriiGPN~~Gii~p~~~~ig~~--- 345 (806)
|- ........++.+ .+..-+.+.|+++..+| .+.+.+.+.+++. +++++.-+|.|+..... -|..
T Consensus 63 fG-g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~--~G~~~a~ 139 (417)
T cd01966 63 LG-GGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLE--DGWAAAV 139 (417)
T ss_pred EC-CHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH--HHHHHHH
Confidence 45 444454444444 45578889999999988 5666665555544 89999999988774321 1100
Q ss_pred CCCcccccccC---CCCCCCEEEEe---CChhHHHHHHHHHHhcCCceeEE-----------------EeecCCCCCCCC
Q psy16953 346 GGMMDNILHSK---LYRPGSVAYVS---RSGGMSNELNNIISKATNGVYEG-----------------VAIGGDRYPGTT 402 (806)
Q Consensus 346 ~g~~~~~~~~~---~~~~G~ValvS---QSG~l~~~l~~~~~~~g~G~s~~-----------------vs~Gn~~~~d~~ 402 (806)
..+...+.+.. ...++.|-++. .+.+=..++-..+...|+-+-.+ +.+| +.+
T Consensus 140 ~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~g-----gt~ 214 (417)
T cd01966 140 EAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTG-----GTT 214 (417)
T ss_pred HHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCC-----CCc
Confidence 00111122211 13577899985 33444467777777766655222 1122 344
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEE
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~l 449 (806)
+.| +.+=++-++-++..+ .. ..+++.+++ +.+.|-+.+
T Consensus 215 lee----i~~~~~A~lniv~~~--~~--~~~a~~Lee-~~GiP~~~~ 252 (417)
T cd01966 215 LED----IRQMGRSAATLAIGE--SM--RKAAEALEE-RTGVPYYVF 252 (417)
T ss_pred HHH----HHhhccCeEEEEECH--HH--HHHHHHHHH-HHCCCeeec
Confidence 555 444556666666544 22 456666665 478898764
Done!