Query psy16953
Match_columns 806
No_of_seqs 570 out of 3099
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:56:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pff_A ATP-citrate synthase; p 100.0 7E-112 2E-116 1007.7 46.3 523 1-526 1-820 (829)
2 3mwd_B ATP-citrate synthase; A 100.0 3.1E-74 1E-78 626.7 33.4 327 198-526 6-334 (334)
3 2yv2_A Succinyl-COA synthetase 100.0 1.8E-57 6.3E-62 490.3 29.1 278 198-508 9-296 (297)
4 2fp4_A Succinyl-COA ligase [GD 100.0 7E-57 2.4E-61 487.2 30.0 282 198-510 10-302 (305)
5 2yv1_A Succinyl-COA ligase [AD 100.0 7.3E-57 2.5E-61 485.0 29.0 277 197-508 8-293 (294)
6 1oi7_A Succinyl-COA synthetase 100.0 1.1E-56 3.7E-61 482.3 28.4 275 199-507 4-287 (288)
7 2nu8_A Succinyl-COA ligase [AD 100.0 1.4E-54 4.9E-59 466.0 30.2 276 199-507 4-287 (288)
8 2csu_A 457AA long hypothetical 100.0 9E-55 3.1E-59 495.1 21.7 266 198-505 5-285 (457)
9 3tqg_A 2-methylcitrate synthas 100.0 9.7E-55 3.3E-59 478.8 11.2 210 572-804 152-365 (375)
10 2c6x_A Citrate synthase 1; tri 100.0 6.2E-54 2.1E-58 471.5 15.9 221 561-804 133-360 (363)
11 3msu_A Citrate synthase; helix 100.0 4.9E-54 1.7E-58 478.7 14.7 222 561-804 186-424 (427)
12 2p2w_A Citrate synthase; trans 100.0 6.7E-54 2.3E-58 472.2 15.6 219 561-804 134-354 (367)
13 2h12_A Citrate synthase; acido 100.0 1E-53 3.6E-58 478.8 17.1 222 561-804 188-427 (436)
14 1o7x_A Citrate synthase; lyase 100.0 6.5E-54 2.2E-58 473.8 14.7 222 561-804 139-368 (377)
15 3hwk_A Methylcitrate synthase; 100.0 1E-53 3.4E-58 474.6 15.3 220 561-804 184-407 (414)
16 1vgp_A 373AA long hypothetical 100.0 9.3E-54 3.2E-58 472.4 14.3 221 561-804 136-364 (373)
17 1aj8_A Citrate synthase; hyper 100.0 1.2E-53 4.2E-58 470.7 14.7 219 562-804 140-361 (371)
18 1iom_A Citrate synthase; open 100.0 1.6E-53 5.5E-58 470.7 15.6 221 562-804 141-367 (377)
19 3o8j_A 2-methylcitrate synthas 100.0 5.6E-54 1.9E-58 475.9 11.6 219 562-804 172-394 (404)
20 2ifc_A Citrate synthase; oxalo 100.0 7.7E-54 2.6E-58 474.4 12.2 224 561-804 144-375 (385)
21 1a59_A Citrate synthase; cold- 100.0 2.6E-53 8.7E-58 470.0 14.8 221 561-804 142-374 (378)
22 1vgm_A 378AA long hypothetical 100.0 2.2E-53 7.7E-58 469.7 13.9 222 561-804 140-369 (378)
23 3l96_A Citrate synthase; quate 100.0 6.1E-54 2.1E-58 478.4 7.0 222 561-804 180-417 (426)
24 2ibp_A Citrate synthase; disul 100.0 2.2E-52 7.7E-57 465.1 14.4 220 562-804 171-400 (409)
25 1csh_A Citrate synthase; lyase 100.0 2.2E-51 7.4E-56 460.4 15.1 213 569-802 201-427 (435)
26 3dmy_A Protein FDRA; predicted 100.0 3.3E-42 1.1E-46 390.7 18.3 207 256-509 24-237 (480)
27 3mwd_A ATP-citrate synthase; A 100.0 4.2E-39 1.4E-43 360.8 15.2 182 1-182 1-425 (425)
28 2fp4_B Succinyl-COA ligase [GD 99.9 4.6E-23 1.6E-27 230.0 14.9 80 4-91 1-87 (395)
29 2nu8_B SCS-beta, succinyl-COA 99.9 7.5E-23 2.6E-27 227.9 15.7 78 4-90 1-79 (388)
30 3ff4_A Uncharacterized protein 99.8 6.1E-20 2.1E-24 172.6 6.3 107 201-336 3-117 (122)
31 3ufx_B Succinyl-COA synthetase 99.8 1.5E-17 5.3E-22 185.6 22.7 374 4-531 1-391 (397)
32 1y81_A Conserved hypothetical 99.7 2.4E-18 8.4E-23 165.1 9.4 111 201-338 13-131 (138)
33 1iuk_A Hypothetical protein TT 99.7 7.2E-19 2.5E-23 169.2 5.5 115 199-338 10-132 (140)
34 2d59_A Hypothetical protein PH 99.7 8.5E-18 2.9E-22 162.4 8.0 113 199-338 19-139 (144)
35 2duw_A Putative COA-binding pr 99.7 5.6E-18 1.9E-22 163.9 6.4 115 199-338 10-132 (145)
36 3ufx_B Succinyl-COA synthetase 98.7 1.5E-08 5E-13 113.2 7.8 90 74-180 283-375 (397)
37 1wr2_A Hypothetical protein PH 98.4 1.4E-07 4.7E-12 97.9 3.8 81 1-90 15-97 (238)
38 2csu_A 457AA long hypothetical 97.7 0.0021 7.2E-08 72.9 20.7 247 203-508 150-446 (457)
39 3dmy_A Protein FDRA; predicted 97.5 0.017 5.8E-07 65.8 25.4 201 286-507 160-412 (480)
40 2fp4_B Succinyl-COA ligase [GD 97.3 0.0009 3.1E-08 74.5 11.6 120 359-503 262-388 (395)
41 2nu8_B SCS-beta, succinyl-COA 97.3 0.0014 4.9E-08 72.8 12.9 120 359-503 255-381 (388)
42 3ijp_A DHPR, dihydrodipicolina 97.0 0.00097 3.3E-08 71.1 7.4 123 201-331 20-145 (288)
43 4f3y_A DHPR, dihydrodipicolina 96.5 0.002 6.8E-08 68.2 5.4 71 255-331 60-130 (272)
44 2h12_A Citrate synthase; acido 96.0 0.026 8.8E-07 63.4 11.3 95 540-638 54-150 (436)
45 1dih_A Dihydrodipicolinate red 95.9 0.009 3.1E-07 63.1 6.5 76 254-335 58-134 (273)
46 3qy9_A DHPR, dihydrodipicolina 95.8 0.018 6.1E-07 59.9 7.9 101 203-331 4-109 (243)
47 3tqg_A 2-methylcitrate synthas 95.7 0.028 9.5E-07 62.0 9.5 110 540-655 11-129 (375)
48 1o7x_A Citrate synthase; lyase 95.6 0.035 1.2E-06 61.3 9.8 114 537-655 6-127 (377)
49 2p2w_A Citrate synthase; trans 95.5 0.0085 2.9E-07 66.0 4.7 112 540-655 6-122 (367)
50 1p9l_A Dihydrodipicolinate red 95.5 0.051 1.8E-06 56.5 10.3 67 260-330 36-104 (245)
51 1vgp_A 373AA long hypothetical 95.5 0.023 7.8E-07 62.7 8.0 112 540-655 7-124 (373)
52 1iom_A Citrate synthase; open 95.5 0.021 7.3E-07 63.0 7.6 95 540-638 7-103 (377)
53 1vgm_A 378AA long hypothetical 95.4 0.052 1.8E-06 60.0 10.5 114 537-655 7-128 (378)
54 2ifc_A Citrate synthase; oxalo 95.4 0.053 1.8E-06 60.0 10.5 97 537-637 9-107 (385)
55 1a59_A Citrate synthase; cold- 95.2 0.035 1.2E-06 61.3 8.0 97 537-638 7-105 (378)
56 3hwk_A Methylcitrate synthase; 94.9 0.044 1.5E-06 61.1 8.1 109 541-655 54-172 (414)
57 3o8j_A 2-methylcitrate synthas 94.9 0.035 1.2E-06 61.7 7.1 95 537-638 35-133 (404)
58 3l96_A Citrate synthase; quate 94.7 0.06 2E-06 60.3 8.4 90 544-639 50-143 (426)
59 2cqy_A Propionyl-COA carboxyla 94.7 0.013 4.3E-07 51.9 2.3 71 5-88 6-78 (108)
60 1csh_A Citrate synthase; lyase 94.7 0.01 3.5E-07 66.7 2.1 98 537-639 41-148 (435)
61 2c6x_A Citrate synthase 1; tri 94.4 0.054 1.8E-06 59.5 7.0 112 540-655 5-121 (363)
62 1j5p_A Aspartate dehydrogenase 94.3 0.13 4.3E-06 53.8 9.2 104 201-330 11-119 (253)
63 1aj8_A Citrate synthase; hyper 94.0 0.022 7.4E-07 62.8 2.8 93 541-637 6-100 (371)
64 4ew6_A D-galactose-1-dehydroge 93.9 0.23 7.8E-06 53.4 10.7 106 202-326 25-135 (330)
65 3msu_A Citrate synthase; helix 93.9 0.065 2.2E-06 60.0 6.5 106 544-655 59-174 (427)
66 2dc1_A L-aspartate dehydrogena 93.5 0.22 7.6E-06 50.7 9.2 108 204-336 2-116 (236)
67 3mjf_A Phosphoribosylamine--gl 93.5 0.099 3.4E-06 58.5 7.1 69 7-88 107-175 (431)
68 3ln6_A Glutathione biosynthesi 93.3 0.069 2.4E-06 64.1 5.7 68 8-88 485-556 (750)
69 4gmf_A Yersiniabactin biosynth 93.2 0.1 3.6E-06 57.4 6.5 112 199-327 4-123 (372)
70 3evn_A Oxidoreductase, GFO/IDH 92.8 0.6 2.1E-05 49.8 11.7 112 202-326 5-121 (329)
71 3o9z_A Lipopolysaccaride biosy 92.5 0.5 1.7E-05 50.4 10.5 115 202-330 3-131 (312)
72 3lp8_A Phosphoribosylamine-gly 92.4 0.11 3.9E-06 58.2 5.6 69 8-89 124-192 (442)
73 3mwd_A ATP-citrate synthase; A 92.2 0.19 6.7E-06 56.2 7.0 95 359-456 271-385 (425)
74 3db2_A Putative NADPH-dependen 91.8 0.26 8.8E-06 53.2 7.4 111 202-326 5-120 (354)
75 2ibp_A Citrate synthase; disul 91.7 0.076 2.6E-06 59.2 3.0 95 537-638 24-121 (409)
76 3c1a_A Putative oxidoreductase 91.6 0.76 2.6E-05 48.7 10.6 113 201-330 9-128 (315)
77 3ln7_A Glutathione biosynthesi 91.2 0.32 1.1E-05 58.4 7.9 66 9-87 491-561 (757)
78 3fhl_A Putative oxidoreductase 91.2 0.74 2.5E-05 49.9 10.2 73 255-330 50-124 (362)
79 1vkz_A Phosphoribosylamine--gl 91.2 0.23 7.9E-06 54.9 6.2 69 7-88 106-174 (412)
80 3moi_A Probable dehydrogenase; 91.2 0.31 1.1E-05 53.4 7.3 74 254-330 48-123 (387)
81 2p2s_A Putative oxidoreductase 90.8 0.77 2.6E-05 49.0 9.8 111 203-327 5-121 (336)
82 3e18_A Oxidoreductase; dehydro 90.8 0.67 2.3E-05 50.2 9.4 70 254-326 49-119 (359)
83 3oa2_A WBPB; oxidoreductase, s 90.7 1.1 3.7E-05 47.9 10.8 115 202-330 3-132 (318)
84 3kux_A Putative oxidoreductase 90.6 1 3.5E-05 48.5 10.6 69 255-326 52-121 (352)
85 2g0t_A Conserved hypothetical 90.6 0.64 2.2E-05 50.7 8.9 118 199-329 19-150 (350)
86 3f4l_A Putative oxidoreductase 90.6 1.2 3.9E-05 47.9 10.9 70 255-327 50-120 (345)
87 4fb5_A Probable oxidoreductase 90.5 0.52 1.8E-05 50.9 8.2 68 254-326 77-148 (393)
88 3q2i_A Dehydrogenase; rossmann 90.4 0.35 1.2E-05 52.2 6.7 115 201-330 12-134 (354)
89 3ezy_A Dehydrogenase; structur 90.2 0.86 2.9E-05 48.9 9.5 69 255-326 48-118 (344)
90 3keo_A Redox-sensing transcrip 90.1 0.41 1.4E-05 48.6 6.4 97 199-309 81-188 (212)
91 3aw8_A PURK, phosphoribosylami 90.0 0.26 8.8E-06 53.4 5.2 68 7-87 96-164 (369)
92 3rc1_A Sugar 3-ketoreductase; 89.8 0.65 2.2E-05 50.2 8.2 113 201-327 26-144 (350)
93 3dty_A Oxidoreductase, GFO/IDH 89.8 0.37 1.3E-05 53.1 6.3 112 201-326 11-139 (398)
94 3gdo_A Uncharacterized oxidore 89.7 1.1 3.7E-05 48.5 9.8 69 255-326 50-119 (358)
95 1lc0_A Biliverdin reductase A; 89.6 2.3 7.8E-05 44.7 12.1 72 255-330 51-124 (294)
96 2ip4_A PURD, phosphoribosylami 89.4 0.6 2.1E-05 51.4 7.6 69 7-88 101-169 (417)
97 4hkt_A Inositol 2-dehydrogenas 89.3 0.72 2.5E-05 49.1 8.0 69 255-327 49-118 (331)
98 3e82_A Putative oxidoreductase 89.3 1.2 4.2E-05 48.2 9.9 69 255-326 52-121 (364)
99 3btv_A Galactose/lactose metab 89.1 0.59 2E-05 52.2 7.3 67 258-326 77-149 (438)
100 1tlt_A Putative oxidoreductase 88.9 1.3 4.4E-05 46.9 9.5 68 255-327 52-120 (319)
101 3euw_A MYO-inositol dehydrogen 88.8 0.79 2.7E-05 49.1 7.9 69 255-326 50-119 (344)
102 3mz0_A Inositol 2-dehydrogenas 88.8 0.88 3E-05 48.8 8.2 79 256-337 52-131 (344)
103 3uuw_A Putative oxidoreductase 88.7 1 3.5E-05 47.4 8.6 68 254-326 52-120 (308)
104 3ec7_A Putative dehydrogenase; 88.7 1.1 3.7E-05 48.5 8.9 113 201-327 22-142 (357)
105 1zh8_A Oxidoreductase; TM0312, 88.6 0.99 3.4E-05 48.5 8.5 112 201-326 17-136 (340)
106 3e9m_A Oxidoreductase, GFO/IDH 88.5 1.1 3.7E-05 47.9 8.7 69 255-326 51-121 (330)
107 3cea_A MYO-inositol 2-dehydrog 88.2 1.4 4.6E-05 47.1 9.3 69 255-327 55-127 (346)
108 4had_A Probable oxidoreductase 88.2 0.68 2.3E-05 49.6 6.9 110 199-326 20-140 (350)
109 1f06_A MESO-diaminopimelate D- 88.0 1.2 4.1E-05 47.7 8.6 70 255-329 45-117 (320)
110 3v5n_A Oxidoreductase; structu 87.9 0.59 2E-05 51.8 6.3 72 257-330 92-169 (417)
111 2xcl_A Phosphoribosylamine--gl 87.9 0.47 1.6E-05 52.3 5.5 70 7-89 102-171 (422)
112 2ho3_A Oxidoreductase, GFO/IDH 87.8 1.8 6E-05 46.0 9.7 71 256-330 49-121 (325)
113 2yrx_A Phosphoribosylglycinami 87.6 0.44 1.5E-05 53.3 5.1 68 8-88 124-191 (451)
114 2yw2_A Phosphoribosylamine--gl 87.5 0.53 1.8E-05 51.9 5.6 69 8-89 103-171 (424)
115 4dim_A Phosphoribosylglycinami 87.4 0.58 2E-05 51.1 5.8 67 9-88 111-177 (403)
116 2nvw_A Galactose/lactose metab 87.2 0.55 1.9E-05 53.3 5.7 67 258-326 96-169 (479)
117 2glx_A 1,5-anhydro-D-fructose 87.1 1.4 4.8E-05 46.7 8.5 73 255-330 46-121 (332)
118 3m2t_A Probable dehydrogenase; 87.0 1.3 4.5E-05 47.9 8.4 110 202-326 5-122 (359)
119 3qha_A Putative oxidoreductase 86.9 2.4 8.2E-05 44.5 10.0 110 202-328 15-128 (296)
120 4e21_A 6-phosphogluconate dehy 86.7 1.6 5.4E-05 47.7 8.7 113 201-329 21-139 (358)
121 4gbj_A 6-phosphogluconate dehy 86.7 1.5 5E-05 46.5 8.3 107 203-328 6-120 (297)
122 2zyd_A 6-phosphogluconate dehy 86.3 2.4 8.1E-05 48.1 10.2 113 201-328 14-136 (480)
123 2qk4_A Trifunctional purine bi 86.1 0.71 2.4E-05 51.5 5.7 69 8-89 129-198 (452)
124 3pff_A ATP-citrate synthase; p 86.0 0.75 2.6E-05 55.5 6.1 95 359-456 271-385 (829)
125 2dzd_A Pyruvate carboxylase; b 85.4 0.67 2.3E-05 51.8 5.1 70 8-88 121-190 (461)
126 1ulz_A Pyruvate carboxylase N- 85.4 0.87 3E-05 50.6 6.0 67 9-88 116-184 (451)
127 4e4t_A Phosphoribosylaminoimid 85.1 1 3.5E-05 50.0 6.3 66 8-87 134-204 (419)
128 3i23_A Oxidoreductase, GFO/IDH 85.1 1.6 5.6E-05 46.8 7.8 69 255-326 50-119 (349)
129 2vpq_A Acetyl-COA carboxylase; 85.0 0.93 3.2E-05 50.4 5.9 67 9-88 116-184 (451)
130 3obb_A Probable 3-hydroxyisobu 85.0 1.9 6.4E-05 45.8 8.0 109 203-327 4-119 (300)
131 3doj_A AT3G25530, dehydrogenas 84.9 2.7 9.3E-05 44.4 9.3 116 197-328 16-138 (310)
132 2w70_A Biotin carboxylase; lig 84.9 0.79 2.7E-05 51.0 5.3 68 8-88 116-186 (449)
133 4dll_A 2-hydroxy-3-oxopropiona 84.7 2.6 8.8E-05 44.9 9.0 111 202-328 31-147 (320)
134 4gwg_A 6-phosphogluconate dehy 84.4 3.6 0.00012 46.8 10.5 116 201-329 3-127 (484)
135 1kjq_A GART 2, phosphoribosylg 83.7 0.6 2.1E-05 50.7 3.6 67 9-88 114-181 (391)
136 3ouz_A Biotin carboxylase; str 83.5 0.91 3.1E-05 50.5 5.0 70 8-88 120-189 (446)
137 4eg0_A D-alanine--D-alanine li 83.2 0.49 1.7E-05 50.2 2.5 78 7-94 107-185 (317)
138 2z04_A Phosphoribosylaminoimid 83.0 0.49 1.7E-05 51.0 2.5 68 7-88 92-160 (365)
139 2vt3_A REX, redox-sensing tran 82.8 2.7 9.1E-05 42.6 7.7 88 200-305 83-178 (215)
140 1ehi_A LMDDL2, D-alanine:D-lac 82.6 0.93 3.2E-05 49.5 4.5 74 7-90 135-209 (377)
141 2p4q_A 6-phosphogluconate dehy 82.5 4.2 0.00014 46.3 10.1 113 203-328 11-132 (497)
142 3e5n_A D-alanine-D-alanine lig 82.5 0.64 2.2E-05 51.2 3.2 76 7-95 159-238 (386)
143 3l6d_A Putative oxidoreductase 82.1 2.3 7.9E-05 44.9 7.3 112 201-328 8-124 (306)
144 3k5i_A Phosphoribosyl-aminoimi 82.0 0.88 3E-05 50.2 4.1 67 8-87 124-193 (403)
145 3orq_A N5-carboxyaminoimidazol 81.2 0.93 3.2E-05 49.5 3.9 72 8-92 111-183 (377)
146 1w96_A ACC, acetyl-coenzyme A 80.8 2.4 8.4E-05 48.7 7.5 73 8-88 174-267 (554)
147 1xea_A Oxidoreductase, GFO/IDH 79.9 2.8 9.6E-05 44.4 7.0 69 255-327 48-118 (323)
148 3pef_A 6-phosphogluconate dehy 79.9 6.6 0.00023 40.7 9.8 110 203-328 2-118 (287)
149 4gqa_A NAD binding oxidoreduct 79.7 2.8 9.6E-05 46.0 7.2 74 254-330 79-155 (412)
150 2iz1_A 6-phosphogluconate dehy 79.7 5.3 0.00018 45.1 9.6 111 203-328 6-126 (474)
151 2h78_A Hibadh, 3-hydroxyisobut 79.7 7 0.00024 40.7 10.0 110 203-328 4-120 (302)
152 3u3x_A Oxidoreductase; structu 79.3 3 0.0001 45.1 7.1 68 256-326 74-142 (361)
153 2pgd_A 6-phosphogluconate dehy 79.3 5.7 0.0002 44.8 9.7 110 203-328 3-124 (482)
154 3pdu_A 3-hydroxyisobutyrate de 79.2 3.9 0.00013 42.5 7.7 111 203-329 2-119 (287)
155 1yb4_A Tartronic semialdehyde 79.1 10 0.00035 39.1 10.9 107 203-327 4-118 (295)
156 3vot_A L-amino acid ligase, BL 79.1 1.5 5.2E-05 48.3 4.8 65 9-88 114-178 (425)
157 3vmm_A Alanine-anticapsin liga 78.6 1.3 4.3E-05 50.2 4.0 68 7-87 139-206 (474)
158 3q2o_A Phosphoribosylaminoimid 78.6 1.3 4.6E-05 48.2 4.1 67 8-87 113-180 (389)
159 2dwc_A PH0318, 433AA long hypo 78.5 0.99 3.4E-05 49.9 3.0 67 9-88 122-189 (433)
160 2dt5_A AT-rich DNA-binding pro 78.1 4.5 0.00016 40.8 7.6 89 199-305 77-173 (211)
161 3i12_A D-alanine-D-alanine lig 77.9 0.92 3.1E-05 49.3 2.5 73 6-88 139-212 (364)
162 3r5x_A D-alanine--D-alanine li 77.7 0.7 2.4E-05 48.4 1.4 70 7-88 97-166 (307)
163 3ohs_X Trans-1,2-dihydrobenzen 77.7 3.9 0.00013 43.5 7.4 70 255-327 50-121 (334)
164 1ydw_A AX110P-like protein; st 76.9 3.7 0.00013 44.2 6.9 71 256-330 57-130 (362)
165 3uw3_A Aspartate-semialdehyde 76.8 15 0.00052 40.2 11.8 116 203-332 5-139 (377)
166 3oqb_A Oxidoreductase; structu 76.7 3.5 0.00012 44.7 6.8 72 254-330 66-142 (383)
167 2gf2_A Hibadh, 3-hydroxyisobut 76.7 8.9 0.0003 39.6 9.6 107 204-326 2-115 (296)
168 3nkl_A UDP-D-quinovosamine 4-d 76.3 3.8 0.00013 37.5 6.0 80 200-298 2-94 (141)
169 3abi_A Putative uncharacterize 76.3 2.6 9.1E-05 45.6 5.6 65 256-327 65-129 (365)
170 1h6d_A Precursor form of gluco 76.0 3.8 0.00013 45.5 6.9 66 258-326 138-204 (433)
171 4fu0_A D-alanine--D-alanine li 75.7 3 0.0001 45.0 5.8 77 8-94 140-216 (357)
172 3tri_A Pyrroline-5-carboxylate 75.1 8.8 0.0003 39.9 9.1 96 202-310 3-104 (280)
173 3bio_A Oxidoreductase, GFO/IDH 74.5 10 0.00036 39.9 9.6 64 259-328 57-123 (304)
174 3rst_A Signal peptide peptidas 74.5 2.3 7.8E-05 43.7 4.2 86 360-456 2-92 (240)
175 3pzr_A Aspartate-semialdehyde 74.4 22 0.00075 38.9 12.3 114 204-331 2-134 (370)
176 2uyy_A N-PAC protein; long-cha 73.9 10 0.00034 39.8 9.3 110 202-328 30-147 (316)
177 3se7_A VANA; alpha-beta struct 73.9 2.5 8.6E-05 45.3 4.6 70 7-91 132-201 (346)
178 3k3p_A D-alanine--D-alanine li 73.6 2.3 7.8E-05 46.7 4.2 72 7-88 161-234 (383)
179 2r7k_A 5-formaminoimidazole-4- 73.4 2.9 9.8E-05 45.7 4.9 57 11-89 128-184 (361)
180 3m2p_A UDP-N-acetylglucosamine 72.4 29 0.00099 35.7 12.3 88 203-305 3-109 (311)
181 1a9x_A Carbamoyl phosphate syn 72.1 2.8 9.4E-05 52.3 4.9 67 9-88 676-742 (1073)
182 1pgj_A 6PGDH, 6-PGDH, 6-phosph 71.6 10 0.00035 42.8 9.1 109 204-328 3-126 (478)
183 3glk_A Acetyl-COA carboxylase 71.3 2.9 0.0001 48.1 4.6 74 7-88 164-261 (540)
184 3ip3_A Oxidoreductase, putativ 70.7 3.6 0.00012 43.9 4.9 76 256-337 53-133 (337)
185 2i87_A D-alanine-D-alanine lig 69.8 4.4 0.00015 43.7 5.4 69 8-89 130-205 (364)
186 3cky_A 2-hydroxymethyl glutara 69.8 10 0.00034 39.3 8.0 108 202-327 4-120 (301)
187 4h3v_A Oxidoreductase domain p 69.8 6.9 0.00024 41.8 6.9 71 257-330 62-137 (390)
188 3jrx_A Acetyl-COA carboxylase 69.6 3.7 0.00013 47.8 5.0 73 8-88 181-277 (587)
189 2pvp_A D-alanine-D-alanine lig 69.3 3.7 0.00013 44.7 4.7 70 8-89 150-219 (367)
190 2ixa_A Alpha-N-acetylgalactosa 69.3 7.7 0.00026 43.1 7.4 72 256-330 73-150 (444)
191 3ktd_A Prephenate dehydrogenas 69.0 3.8 0.00013 44.4 4.6 108 203-328 9-122 (341)
192 3tqt_A D-alanine--D-alanine li 68.6 4 0.00014 44.6 4.7 73 7-89 140-214 (372)
193 1iow_A DD-ligase, DDLB, D-ALA\ 68.5 4.1 0.00014 42.1 4.6 67 8-88 97-171 (306)
194 1t4b_A Aspartate-semialdehyde 68.2 28 0.00096 37.9 11.4 113 204-332 3-136 (367)
195 3do5_A HOM, homoserine dehydro 68.0 8.5 0.00029 41.4 7.1 144 257-440 65-224 (327)
196 4ezb_A Uncharacterized conserv 67.7 22 0.00076 37.5 10.3 110 202-328 24-144 (317)
197 1a9x_A Carbamoyl phosphate syn 67.4 4.2 0.00014 50.7 5.1 69 7-88 128-196 (1073)
198 1vpd_A Tartronate semialdehyde 67.4 11 0.00038 39.0 7.7 108 203-328 6-122 (299)
199 3ruf_A WBGU; rossmann fold, UD 67.0 26 0.0009 36.6 10.7 91 201-305 24-151 (351)
200 1e4e_A Vancomycin/teicoplanin 66.7 3 0.0001 44.6 3.2 68 7-89 132-199 (343)
201 3qmj_A Enoyl-COA hydratase, EC 66.4 7.6 0.00026 39.9 6.1 91 432-541 90-182 (256)
202 2ozp_A N-acetyl-gamma-glutamyl 66.4 20 0.0007 38.6 9.7 37 268-308 67-103 (345)
203 3qsg_A NAD-binding phosphogluc 66.1 27 0.00094 36.7 10.6 112 202-330 24-144 (312)
204 1vm6_A DHPR, dihydrodipicolina 66.0 5.3 0.00018 40.9 4.7 58 269-331 53-110 (228)
205 3kht_A Response regulator; PSI 65.7 71 0.0024 28.1 12.6 117 361-510 6-129 (144)
206 2qf7_A Pyruvate carboxylase pr 65.1 2 6.8E-05 54.0 1.6 70 8-88 135-204 (1165)
207 1y7o_A ATP-dependent CLP prote 64.6 5.5 0.00019 40.3 4.5 73 375-456 37-116 (218)
208 3g0o_A 3-hydroxyisobutyrate de 63.9 10 0.00035 39.7 6.7 111 202-328 7-125 (303)
209 3b1f_A Putative prephenate deh 63.8 15 0.0005 37.9 7.8 111 203-328 7-124 (290)
210 4b8w_A GDP-L-fucose synthase; 63.7 17 0.00059 36.9 8.2 86 201-305 5-113 (319)
211 2ahr_A Putative pyrroline carb 63.3 13 0.00045 37.6 7.2 91 203-311 4-97 (259)
212 2cvz_A Dehydrogenase, 3-hydrox 63.1 23 0.00078 36.2 9.0 106 204-327 3-112 (289)
213 2cby_A ATP-dependent CLP prote 63.0 6.3 0.00021 39.5 4.6 78 370-456 14-98 (208)
214 3hdv_A Response regulator; PSI 62.9 67 0.0023 27.9 11.2 114 361-508 8-126 (136)
215 3upl_A Oxidoreductase; rossman 62.1 5.8 0.0002 44.6 4.5 70 256-328 93-163 (446)
216 2z2v_A Hypothetical protein PH 61.4 17 0.00057 39.5 7.9 109 200-327 14-129 (365)
217 2rcy_A Pyrroline carboxylate r 61.2 25 0.00084 35.5 8.8 89 203-310 5-97 (262)
218 1yg6_A ATP-dependent CLP prote 60.9 7.2 0.00025 38.5 4.5 63 390-456 28-97 (193)
219 2pv7_A T-protein [includes: ch 59.7 39 0.0013 35.1 10.3 93 203-328 22-119 (298)
220 1k68_A Phytochrome response re 59.5 86 0.0029 27.0 13.4 118 361-510 3-132 (140)
221 4e7p_A Response regulator; DNA 58.3 1E+02 0.0035 27.4 11.9 115 362-509 22-140 (150)
222 3va7_A KLLA0E08119P; carboxyla 58.1 4.8 0.00017 50.8 3.3 68 8-88 145-213 (1236)
223 3lwb_A D-alanine--D-alanine li 57.1 4.6 0.00016 44.0 2.5 70 7-89 151-222 (373)
224 3ixl_A Amdase, arylmalonate de 57.0 11 0.00037 38.6 5.2 50 285-335 105-154 (240)
225 2fb9_A D-alanine:D-alanine lig 56.7 8.4 0.00029 40.8 4.4 68 7-90 118-185 (322)
226 3eth_A Phosphoribosylaminoimid 56.2 4.7 0.00016 43.8 2.4 61 9-82 81-144 (355)
227 3oa2_A WBPB; oxidoreductase, s 55.4 26 0.00088 37.0 8.0 132 362-516 5-151 (318)
228 3td9_A Branched chain amino ac 55.3 58 0.002 33.9 10.8 197 231-448 17-235 (366)
229 4id9_A Short-chain dehydrogena 55.1 58 0.002 33.8 10.7 88 201-305 18-126 (347)
230 3mtj_A Homoserine dehydrogenas 55.1 19 0.00065 40.4 7.1 118 256-390 64-185 (444)
231 1yqg_A Pyrroline-5-carboxylate 55.0 19 0.00065 36.4 6.6 87 204-309 2-93 (263)
232 3bf0_A Protease 4; bacterial, 54.9 7.9 0.00027 45.0 4.2 82 359-456 299-384 (593)
233 3n6r_A Propionyl-COA carboxyla 54.7 4 0.00014 48.3 1.6 70 8-88 116-185 (681)
234 2qr3_A Two-component system re 54.3 1E+02 0.0035 26.7 10.8 78 362-450 5-87 (140)
235 1z82_A Glycerol-3-phosphate de 54.2 14 0.00048 39.2 5.7 90 203-309 15-116 (335)
236 3ggo_A Prephenate dehydrogenas 54.0 40 0.0014 35.6 9.2 108 203-328 34-148 (314)
237 3u9t_A MCC alpha, methylcroton 53.4 5 0.00017 47.4 2.2 71 8-89 142-212 (675)
238 2zay_A Response regulator rece 52.1 1.2E+02 0.0041 26.6 11.0 115 361-510 9-129 (147)
239 3lkb_A Probable branched-chain 51.5 45 0.0016 35.2 9.3 152 286-449 64-230 (392)
240 4eyg_A Twin-arginine transloca 51.5 72 0.0025 33.1 10.8 86 89-177 4-93 (368)
241 2j5g_A ALR4455 protein; enzyme 51.4 43 0.0015 34.6 8.7 121 403-541 56-200 (263)
242 2lqo_A Putative glutaredoxin R 51.0 19 0.00066 31.1 5.1 67 10-91 19-86 (92)
243 3jte_A Response regulator rece 50.6 1.3E+02 0.0044 26.3 12.4 115 362-510 5-124 (143)
244 3mjf_A Phosphoribosylamine--gl 50.1 21 0.00071 39.5 6.5 47 281-331 52-99 (431)
245 2gkg_A Response regulator homo 49.5 1.1E+02 0.0038 25.7 10.0 77 362-449 7-86 (127)
246 3lke_A Enoyl-COA hydratase; ny 49.1 17 0.00059 37.5 5.2 83 441-540 99-183 (263)
247 3dhn_A NAD-dependent epimerase 49.0 56 0.0019 31.6 8.8 21 203-223 5-29 (227)
248 3kcn_A Adenylate cyclase homol 48.7 1.4E+02 0.0048 26.5 11.0 113 362-509 6-123 (151)
249 2rjn_A Response regulator rece 48.5 1.5E+02 0.005 26.4 12.0 115 361-509 8-126 (154)
250 3cg4_A Response regulator rece 48.5 1.4E+02 0.0046 26.0 11.6 120 360-510 7-128 (142)
251 2pn1_A Carbamoylphosphate synt 48.3 10 0.00036 39.6 3.5 64 8-86 115-180 (331)
252 3kqf_A Enoyl-COA hydratase/iso 48.3 23 0.00077 36.6 6.0 52 403-456 41-115 (265)
253 3viv_A 441AA long hypothetical 47.4 20 0.00069 36.5 5.3 72 359-456 6-83 (230)
254 2izz_A Pyrroline-5-carboxylate 47.1 60 0.002 34.1 9.2 96 202-310 22-124 (322)
255 3hzh_A Chemotaxis response reg 46.4 84 0.0029 28.4 9.2 80 362-450 38-118 (157)
256 3heb_A Response regulator rece 46.2 1.6E+02 0.0054 26.1 12.9 117 362-510 6-136 (152)
257 3f6c_A Positive transcription 46.1 1.4E+02 0.0049 25.6 11.4 114 362-509 3-120 (134)
258 4egb_A DTDP-glucose 4,6-dehydr 45.7 44 0.0015 34.8 7.9 94 201-305 23-149 (346)
259 3qwd_A ATP-dependent CLP prote 45.5 18 0.00062 36.2 4.5 63 390-456 29-98 (203)
260 3ba1_A HPPR, hydroxyphenylpyru 45.3 19 0.00064 38.7 4.9 106 201-330 163-276 (333)
261 1uc8_A LYSX, lysine biosynthes 44.8 11 0.00037 38.1 2.9 66 8-86 89-154 (280)
262 3o9z_A Lipopolysaccaride biosy 44.7 70 0.0024 33.5 9.3 130 362-514 5-148 (312)
263 3hv2_A Response regulator/HD d 44.4 1.7E+02 0.0058 26.0 12.3 117 359-510 13-134 (153)
264 3hut_A Putative branched-chain 43.8 2.7E+02 0.0092 28.5 13.7 150 286-448 61-225 (358)
265 1np3_A Ketol-acid reductoisome 43.7 22 0.00076 38.0 5.2 90 202-308 16-110 (338)
266 3ax6_A Phosphoribosylaminoimid 43.6 6.9 0.00024 42.2 1.2 61 9-85 102-163 (380)
267 4dad_A Putative pilus assembly 43.4 1.7E+02 0.0057 25.6 10.7 120 358-510 18-142 (146)
268 1k66_A Phytochrome response re 43.3 1.6E+02 0.0056 25.5 12.9 119 360-510 6-139 (149)
269 4evq_A Putative ABC transporte 42.9 1.6E+02 0.0056 30.4 11.9 209 89-325 14-232 (375)
270 3i83_A 2-dehydropantoate 2-red 42.6 49 0.0017 34.7 7.7 49 256-308 59-109 (320)
271 3lp8_A Phosphoribosylamine-gly 42.5 52 0.0018 36.4 8.2 46 282-331 69-115 (442)
272 3ic5_A Putative saccharopine d 42.4 40 0.0014 28.8 5.9 102 201-321 4-115 (118)
273 3hbl_A Pyruvate carboxylase; T 42.3 6.6 0.00023 49.3 0.9 71 7-88 118-188 (1150)
274 3eod_A Protein HNR; response r 42.2 1.6E+02 0.0055 25.1 11.5 81 359-450 6-86 (130)
275 3p5m_A Enoyl-COA hydratase/iso 42.2 33 0.0011 35.1 6.1 54 403-456 38-105 (255)
276 1mx3_A CTBP1, C-terminal bindi 42.0 24 0.00081 38.2 5.1 105 201-325 167-279 (347)
277 1y8q_A Ubiquitin-like 1 activa 41.8 86 0.0029 33.6 9.5 118 201-335 35-162 (346)
278 3p2l_A ATP-dependent CLP prote 41.7 22 0.00077 35.4 4.5 63 390-456 32-101 (201)
279 3i09_A Periplasmic branched-ch 41.6 2.4E+02 0.0082 29.2 13.0 85 91-178 4-93 (375)
280 3d1l_A Putative NADP oxidoredu 41.5 19 0.00064 36.6 4.0 92 202-309 10-107 (266)
281 2r85_A PURP protein PF1517; AT 41.5 22 0.00074 37.0 4.6 59 9-89 102-160 (334)
282 3vps_A TUNA, NAD-dependent epi 41.5 1.5E+02 0.0052 29.9 11.1 20 286-305 100-119 (321)
283 2obn_A Hypothetical protein; s 41.4 18 0.00061 39.3 4.0 68 255-329 59-133 (349)
284 2qsj_A DNA-binding response re 41.3 1.9E+02 0.0064 25.6 11.2 81 362-450 5-85 (154)
285 1qkk_A DCTD, C4-dicarboxylate 41.3 1.9E+02 0.0065 25.6 12.3 79 361-450 4-82 (155)
286 4dgs_A Dehydrogenase; structur 40.6 55 0.0019 35.2 7.7 193 81-328 63-281 (340)
287 3c8m_A Homoserine dehydrogenas 40.3 31 0.0011 36.9 5.7 73 261-337 78-154 (331)
288 2g5c_A Prephenate dehydrogenas 40.2 1.1E+02 0.0036 31.1 9.6 104 203-320 2-111 (281)
289 3eaf_A ABC transporter, substr 39.8 34 0.0012 36.3 6.0 151 286-448 65-230 (391)
290 3e48_A Putative nucleoside-dip 39.6 1.4E+02 0.0046 30.0 10.3 47 256-305 53-106 (289)
291 2f6i_A ATP-dependent CLP prote 39.5 26 0.00089 35.2 4.6 73 374-456 30-109 (215)
292 3ilh_A Two component response 39.1 1.9E+02 0.0065 25.0 11.4 80 362-449 11-98 (146)
293 3cfy_A Putative LUXO repressor 38.8 1.9E+02 0.0067 25.1 10.1 113 362-509 6-122 (137)
294 3ing_A Homoserine dehydrogenas 38.4 47 0.0016 35.5 6.7 139 261-440 73-225 (325)
295 1eq2_A ADP-L-glycero-D-mannohe 38.1 1.2E+02 0.004 30.7 9.6 19 204-222 1-23 (310)
296 3hdg_A Uncharacterized protein 37.6 2E+02 0.0067 24.8 10.2 114 362-510 9-126 (137)
297 3dqp_A Oxidoreductase YLBE; al 37.4 92 0.0031 30.0 8.3 88 204-305 2-106 (219)
298 1tg6_A Putative ATP-dependent 37.1 28 0.00096 36.5 4.6 75 373-456 72-153 (277)
299 3gt7_A Sensor protein; structu 36.4 2.3E+02 0.0079 25.2 13.2 116 360-510 7-128 (154)
300 3eul_A Possible nitrate/nitrit 36.1 2.3E+02 0.0077 25.0 12.1 119 358-509 13-135 (152)
301 3cu5_A Two component transcrip 36.1 1.5E+02 0.0053 26.0 9.0 81 362-450 4-84 (141)
302 2yxb_A Coenzyme B12-dependent 36.1 1.6E+02 0.0054 27.9 9.4 87 74-178 55-142 (161)
303 3cnb_A DNA-binding response re 35.9 2.1E+02 0.0072 24.6 12.8 116 361-510 9-131 (143)
304 3o38_A Short chain dehydrogena 35.9 1.4E+02 0.0047 29.8 9.6 91 359-455 20-113 (266)
305 2f1k_A Prephenate dehydrogenas 35.8 85 0.0029 31.8 8.0 96 204-317 2-103 (279)
306 1e6u_A GDP-fucose synthetase; 35.8 40 0.0014 34.6 5.5 81 203-305 4-107 (321)
307 3eaf_A ABC transporter, substr 35.8 3.7E+02 0.013 28.0 13.5 203 89-325 2-225 (391)
308 3gkb_A Putative enoyl-COA hydr 35.7 53 0.0018 34.3 6.5 52 403-456 40-119 (287)
309 3pid_A UDP-glucose 6-dehydroge 35.7 68 0.0023 35.7 7.7 63 256-321 97-169 (432)
310 3bf0_A Protease 4; bacterial, 35.6 18 0.00063 41.9 3.2 48 403-450 75-127 (593)
311 3kto_A Response regulator rece 35.5 1.9E+02 0.0065 25.0 9.5 115 361-510 7-127 (136)
312 3cg0_A Response regulator rece 35.2 2.1E+02 0.0073 24.5 10.6 116 360-510 9-129 (140)
313 3gt0_A Pyrroline-5-carboxylate 34.9 44 0.0015 33.6 5.5 96 203-310 3-103 (247)
314 3myb_A Enoyl-COA hydratase; ss 34.9 51 0.0017 34.4 6.2 52 403-456 58-132 (286)
315 3h5i_A Response regulator/sens 34.9 2.3E+02 0.0077 24.6 11.3 118 362-510 7-125 (140)
316 3gow_A PAAG, probable enoyl-CO 34.8 52 0.0018 33.6 6.1 54 403-456 32-104 (254)
317 3k96_A Glycerol-3-phosphate de 34.7 95 0.0032 33.4 8.5 50 256-310 87-139 (356)
318 2nqt_A N-acetyl-gamma-glutamyl 34.3 65 0.0022 34.8 7.1 92 203-308 10-114 (352)
319 1hzd_A AUH, AU-binding protein 34.0 40 0.0014 34.9 5.1 54 403-456 44-118 (272)
320 3lua_A Response regulator rece 33.8 1.5E+02 0.0053 25.7 8.6 116 361-510 5-128 (140)
321 4di1_A Enoyl-COA hydratase ECH 33.7 44 0.0015 34.8 5.4 54 403-456 55-128 (277)
322 3fdu_A Putative enoyl-COA hydr 33.7 58 0.002 33.5 6.3 24 431-456 89-112 (266)
323 3ulk_A Ketol-acid reductoisome 33.6 29 0.00099 39.0 4.1 95 201-308 36-135 (491)
324 2qvg_A Two component response 33.5 1.8E+02 0.0062 25.2 9.0 82 361-450 8-96 (143)
325 3fr7_A Putative ketol-acid red 33.2 18 0.00062 41.2 2.5 115 203-335 55-186 (525)
326 3rrv_A Enoyl-COA hydratase/iso 33.2 54 0.0018 34.0 6.0 54 403-456 60-135 (276)
327 2czc_A Glyceraldehyde-3-phosph 33.2 78 0.0027 33.7 7.4 46 256-307 67-112 (334)
328 3hut_A Putative branched-chain 33.1 4.1E+02 0.014 27.1 13.6 85 89-176 2-92 (358)
329 1hdo_A Biliverdin IX beta redu 33.0 1.3E+02 0.0043 28.2 8.3 21 203-223 4-28 (206)
330 2c20_A UDP-glucose 4-epimerase 32.9 3E+02 0.01 28.0 11.8 91 203-305 2-118 (330)
331 4ggi_A UDP-2,3-diacylglucosami 32.8 26 0.00089 36.7 3.5 44 286-329 234-277 (283)
332 1usg_A Leucine-specific bindin 32.8 4E+02 0.014 26.9 14.4 150 287-447 60-223 (346)
333 2rdm_A Response regulator rece 32.8 2.3E+02 0.0078 24.0 13.0 79 362-450 7-86 (132)
334 3cz5_A Two-component response 32.7 2.3E+02 0.0077 25.0 9.7 80 362-450 7-86 (153)
335 3gvx_A Glycerate dehydrogenase 32.4 58 0.002 34.2 6.1 105 201-329 121-233 (290)
336 4eyg_A Twin-arginine transloca 31.9 2E+02 0.007 29.5 10.4 145 287-443 62-220 (368)
337 3oc7_A Enoyl-COA hydratase; se 31.8 55 0.0019 33.6 5.8 52 403-456 43-121 (267)
338 2nwr_A 2-dehydro-3-deoxyphosph 31.4 49 0.0017 34.5 5.2 46 114-161 22-80 (267)
339 1rpn_A GDP-mannose 4,6-dehydra 31.4 1.5E+02 0.005 30.4 9.1 24 200-223 12-39 (335)
340 3g64_A Putative enoyl-COA hydr 31.1 56 0.0019 33.8 5.7 54 403-456 49-126 (279)
341 3h1g_A Chemotaxis protein CHEY 31.0 2.5E+02 0.0085 23.9 12.7 79 362-449 7-87 (129)
342 3i47_A Enoyl COA hydratase/iso 30.9 58 0.002 33.6 5.8 15 442-456 98-112 (268)
343 3t89_A 1,4-dihydroxy-2-naphtho 30.8 65 0.0022 33.7 6.2 15 442-456 122-136 (289)
344 1szo_A 6-oxocamphor hydrolase; 30.5 66 0.0023 32.9 6.1 60 403-466 48-129 (257)
345 2ph5_A Homospermidine synthase 30.2 55 0.0019 37.0 5.7 118 199-329 10-156 (480)
346 1x0v_A GPD-C, GPDH-C, glycerol 30.1 1.6E+02 0.0054 30.9 9.2 49 256-308 78-128 (354)
347 2hjs_A USG-1 protein homolog; 29.9 72 0.0025 34.1 6.5 36 269-308 68-103 (340)
348 3i42_A Response regulator rece 29.8 2.5E+02 0.0084 23.7 9.1 78 362-450 5-84 (127)
349 3l3s_A Enoyl-COA hydratase/iso 29.7 60 0.002 33.3 5.6 54 403-456 38-117 (263)
350 3gpi_A NAD-dependent epimerase 29.6 94 0.0032 31.3 7.1 88 203-305 4-109 (286)
351 3sll_A Probable enoyl-COA hydr 29.6 67 0.0023 33.5 6.0 15 442-456 122-136 (290)
352 3db2_A Putative NADPH-dependen 29.6 2.3E+02 0.0077 29.8 10.4 82 412-516 63-144 (354)
353 1i36_A Conserved hypothetical 29.5 1.3E+02 0.0046 29.9 8.2 101 204-322 2-105 (264)
354 2c5a_A GDP-mannose-3', 5'-epim 29.5 2.5E+02 0.0085 29.5 10.8 90 202-305 29-145 (379)
355 3nzo_A UDP-N-acetylglucosamine 29.5 2.8E+02 0.0096 29.7 11.3 21 287-307 147-167 (399)
356 3pwk_A Aspartate-semialdehyde 29.2 1.1E+02 0.0037 33.3 7.8 90 203-307 3-98 (366)
357 1ys4_A Aspartate-semialdehyde 29.2 70 0.0024 34.3 6.3 35 269-307 83-117 (354)
358 2bka_A CC3, TAT-interacting pr 28.9 1.3E+02 0.0045 29.2 7.9 92 202-305 18-132 (242)
359 4hdt_A 3-hydroxyisobutyryl-COA 28.8 86 0.0029 33.8 6.9 15 442-456 104-118 (353)
360 4eml_A Naphthoate synthase; 1, 28.5 65 0.0022 33.4 5.6 15 442-456 108-122 (275)
361 3t8b_A 1,4-dihydroxy-2-naphtho 28.5 69 0.0024 34.3 6.0 15 442-456 166-180 (334)
362 3moy_A Probable enoyl-COA hydr 28.1 51 0.0017 33.9 4.7 53 403-456 42-113 (263)
363 3mm4_A Histidine kinase homolo 28.0 3.9E+02 0.013 25.3 12.1 119 359-509 60-196 (206)
364 3tz6_A Aspartate-semialdehyde 27.8 1.2E+02 0.0041 32.6 7.7 89 204-307 3-97 (344)
365 3i6i_A Putative leucoanthocyan 27.7 1.2E+02 0.004 31.6 7.6 88 202-302 10-117 (346)
366 2g76_A 3-PGDH, D-3-phosphoglyc 27.6 69 0.0024 34.3 5.8 104 201-325 164-275 (335)
367 3i45_A Twin-arginine transloca 27.4 5.3E+02 0.018 26.6 15.6 208 89-324 3-224 (387)
368 2a7k_A CARB; crotonase, antibi 27.2 70 0.0024 32.4 5.5 16 441-456 92-107 (250)
369 4a29_A Engineered retro-aldol 27.2 77 0.0026 32.9 5.7 91 288-384 119-226 (258)
370 1dci_A Dienoyl-COA isomerase; 27.1 78 0.0027 32.6 6.0 15 442-456 106-120 (275)
371 3pk0_A Short-chain dehydrogena 26.9 4.6E+02 0.016 26.0 11.7 90 360-455 9-100 (262)
372 2vx2_A Enoyl-COA hydratase dom 26.9 71 0.0024 33.3 5.6 54 403-456 65-139 (287)
373 1txg_A Glycerol-3-phosphate de 26.9 58 0.002 33.9 5.0 47 257-307 58-107 (335)
374 1gsa_A Glutathione synthetase; 26.8 19 0.00064 37.0 1.1 46 37-87 142-187 (316)
375 2ep5_A 350AA long hypothetical 26.7 77 0.0026 34.0 6.0 36 268-307 76-111 (350)
376 3aon_B V-type sodium ATPase su 26.6 1.1E+02 0.0037 27.7 6.0 101 203-330 3-107 (115)
377 2ew2_A 2-dehydropantoate 2-red 26.3 64 0.0022 33.0 5.1 37 269-308 74-112 (316)
378 4dpl_A Malonyl-COA/succinyl-CO 26.2 34 0.0012 37.1 3.1 35 269-307 79-113 (359)
379 4dpk_A Malonyl-COA/succinyl-CO 26.2 34 0.0012 37.1 3.1 35 269-307 79-113 (359)
380 1zud_1 Adenylyltransferase THI 26.1 3.8E+02 0.013 27.0 10.9 116 201-333 27-153 (251)
381 3dbi_A Sugar-binding transcrip 26.1 1.9E+02 0.0066 29.6 8.9 114 305-449 28-149 (338)
382 3ew7_A LMO0794 protein; Q8Y8U8 26.0 2.2E+02 0.0074 26.9 8.7 20 204-223 2-25 (221)
383 2pk3_A GDP-6-deoxy-D-LYXO-4-he 26.0 1.9E+02 0.0067 29.2 8.9 93 199-305 9-126 (321)
384 3snk_A Response regulator CHEY 26.0 2E+02 0.007 24.7 7.9 79 361-450 15-94 (135)
385 1sb8_A WBPP; epimerase, 4-epim 25.9 3.3E+02 0.011 28.0 10.8 20 286-305 134-153 (352)
386 3kjx_A Transcriptional regulat 25.9 5.4E+02 0.018 26.2 12.4 112 306-449 36-153 (344)
387 2ej5_A Enoyl-COA hydratase sub 25.8 91 0.0031 31.7 6.1 53 404-456 36-107 (257)
388 3pea_A Enoyl-COA hydratase/iso 25.7 82 0.0028 32.2 5.8 52 403-456 37-111 (261)
389 3qk8_A Enoyl-COA hydratase ECH 25.7 93 0.0032 32.1 6.2 54 403-456 45-120 (272)
390 2x6t_A ADP-L-glycero-D-manno-h 25.6 2.5E+02 0.0084 29.1 9.7 21 202-222 46-70 (357)
391 3hrx_A Probable enoyl-COA hydr 25.5 1E+02 0.0035 31.2 6.5 54 403-456 32-104 (254)
392 3h0u_A Putative enoyl-COA hydr 25.4 84 0.0029 32.8 5.8 16 441-456 101-116 (289)
393 1sg4_A 3,2-trans-enoyl-COA iso 25.3 77 0.0026 32.4 5.5 54 403-456 36-110 (260)
394 1ef8_A Methylmalonyl COA decar 25.3 87 0.003 31.9 5.9 23 432-456 87-109 (261)
395 2yy7_A L-threonine dehydrogena 25.3 1.9E+02 0.0066 29.1 8.6 90 203-305 3-118 (312)
396 2j48_A Two-component sensor ki 25.2 2.7E+02 0.0094 22.5 9.3 78 362-450 3-82 (119)
397 4fzw_A 2,3-dehydroadipyl-COA h 25.0 91 0.0031 31.9 5.9 52 403-456 37-108 (258)
398 3rot_A ABC sugar transporter, 24.9 4.8E+02 0.016 25.9 11.6 89 79-175 118-207 (297)
399 3lop_A Substrate binding perip 24.6 2.9E+02 0.0099 28.4 10.0 144 298-448 72-227 (364)
400 1qp8_A Formate dehydrogenase; 24.5 1.4E+02 0.0046 31.4 7.3 100 201-325 123-230 (303)
401 3hsk_A Aspartate-semialdehyde 24.4 97 0.0033 33.8 6.3 36 269-308 93-128 (381)
402 2o8v_A Phosphoadenosine phosph 24.3 2E+02 0.0069 29.0 8.4 80 75-169 31-111 (252)
403 3o26_A Salutaridine reductase; 24.3 2.1E+02 0.0073 28.7 8.7 91 359-455 10-103 (311)
404 2qxy_A Response regulator; reg 24.2 3.4E+02 0.012 23.3 12.1 113 362-510 6-122 (142)
405 3e8x_A Putative NAD-dependent 24.2 1.5E+02 0.0052 28.7 7.3 89 201-305 20-131 (236)
406 3op7_A Aminotransferase class 24.0 1.4E+02 0.005 30.9 7.5 74 256-331 112-195 (375)
407 2r00_A Aspartate-semialdehyde 23.7 1.4E+02 0.0046 31.9 7.2 90 202-307 3-99 (336)
408 3n0w_A ABC branched chain amin 23.7 6.1E+02 0.021 26.1 16.4 85 90-177 5-94 (379)
409 3tml_A 2-dehydro-3-deoxyphosph 23.6 40 0.0014 35.6 2.9 44 114-160 36-92 (288)
410 1vl0_A DTDP-4-dehydrorhamnose 23.6 87 0.003 31.5 5.5 23 201-223 11-37 (292)
411 3dr3_A N-acetyl-gamma-glutamyl 23.5 1.4E+02 0.0046 32.1 7.2 43 261-308 68-110 (337)
412 3gg2_A Sugar dehydrogenase, UD 23.4 1.8E+02 0.0062 32.2 8.4 64 256-322 66-139 (450)
413 3td9_A Branched chain amino ac 23.4 5.5E+02 0.019 26.2 11.9 66 112-178 38-103 (366)
414 4ew6_A D-galactose-1-dehydroge 23.4 81 0.0028 33.2 5.3 131 362-517 27-160 (330)
415 2ppy_A Enoyl-COA hydratase; be 23.2 80 0.0028 32.3 5.1 54 403-456 40-114 (265)
416 3tnl_A Shikimate dehydrogenase 23.2 2.2E+02 0.0075 30.1 8.7 115 23-163 95-213 (315)
417 2d00_A V-type ATP synthase sub 23.2 1.9E+02 0.0066 25.7 7.0 79 203-307 4-83 (109)
418 3ko8_A NAD-dependent epimerase 23.1 2.7E+02 0.0091 28.0 9.2 20 286-305 94-113 (312)
419 2a35_A Hypothetical protein PA 23.1 1.1E+02 0.0036 29.2 5.7 21 285-305 94-114 (215)
420 4fzw_C 1,2-epoxyphenylacetyl-C 23.0 1E+02 0.0034 31.9 5.8 54 403-456 47-124 (274)
421 3euw_A MYO-inositol dehydrogen 22.9 1.1E+02 0.0037 32.2 6.2 84 410-516 60-143 (344)
422 3sg0_A Extracellular ligand-bi 22.9 3.2E+02 0.011 28.1 9.9 158 281-447 74-244 (386)
423 2uzf_A Naphthoate synthase; ly 22.8 95 0.0033 32.0 5.6 23 432-456 98-120 (273)
424 1p9l_A Dihydrodipicolinate red 22.7 5.1E+02 0.018 26.1 11.1 111 362-508 2-117 (245)
425 3rsi_A Putative enoyl-COA hydr 22.6 90 0.0031 32.0 5.3 16 441-456 100-115 (265)
426 3t3w_A Enoyl-COA hydratase; ss 22.3 1E+02 0.0035 31.8 5.8 54 403-456 52-130 (279)
427 1evy_A Glycerol-3-phosphate de 22.1 37 0.0013 36.2 2.4 90 204-309 17-129 (366)
428 3v7e_A Ribosome-associated pro 22.1 1.6E+02 0.0055 24.6 6.0 42 285-327 16-57 (82)
429 3pe8_A Enoyl-COA hydratase; em 22.0 66 0.0023 32.9 4.2 54 403-456 41-105 (256)
430 2b4a_A BH3024; flavodoxin-like 22.0 3.2E+02 0.011 23.5 8.4 83 358-450 13-95 (138)
431 2pbp_A Enoyl-COA hydratase sub 21.9 62 0.0021 33.0 3.9 16 441-456 93-108 (258)
432 1t90_A MMSDH, probable methylm 21.9 2.2E+02 0.0076 31.8 8.9 129 359-510 167-310 (486)
433 1gdh_A D-glycerate dehydrogena 21.7 71 0.0024 33.8 4.4 105 201-325 145-258 (320)
434 4huj_A Uncharacterized protein 21.6 59 0.002 32.1 3.6 91 202-308 23-117 (220)
435 3r9t_A ECHA1_1; ssgcid, seattl 21.6 77 0.0026 32.6 4.6 16 441-456 99-114 (267)
436 3cgx_A Putative nucleotide-dip 21.4 4.5E+02 0.015 26.3 10.3 51 284-335 90-143 (242)
437 4ina_A Saccharopine dehydrogen 21.4 74 0.0025 34.8 4.6 69 258-330 64-141 (405)
438 2d6f_A Glutamyl-tRNA(Gln) amid 21.4 2.4E+02 0.0082 31.3 8.8 78 398-497 310-391 (435)
439 3cps_A Glyceraldehyde 3-phosph 21.2 1.3E+02 0.0045 32.5 6.5 42 261-306 95-139 (354)
440 3j21_Z 50S ribosomal protein L 21.2 1.4E+02 0.0047 25.9 5.5 42 285-327 20-61 (99)
441 3he2_A Enoyl-COA hydratase ECH 21.2 92 0.0032 32.1 5.1 52 404-456 54-120 (264)
442 3lf2_A Short chain oxidoreduct 20.9 6.1E+02 0.021 25.0 12.6 90 360-455 7-99 (265)
443 1b7g_O Protein (glyceraldehyde 20.9 99 0.0034 33.1 5.4 46 257-307 66-111 (340)
444 1u8f_O GAPDH, glyceraldehyde-3 20.9 1.5E+02 0.0051 31.6 6.8 42 260-306 80-124 (335)
445 3njd_A Enoyl-COA hydratase; ss 20.8 94 0.0032 33.1 5.2 15 442-456 156-170 (333)
446 2nac_A NAD-dependent formate d 20.8 1.2E+02 0.004 33.3 6.1 106 201-325 190-303 (393)
447 2axq_A Saccharopine dehydrogen 20.7 1.9E+02 0.0066 32.2 8.0 109 201-327 22-140 (467)
448 1nzy_A Dehalogenase, 4-chlorob 20.6 1E+02 0.0035 31.6 5.3 54 403-456 35-113 (269)
449 4a7p_A UDP-glucose dehydrogena 20.5 3.3E+02 0.011 30.1 9.8 65 256-323 72-147 (446)
450 3e5r_O PP38, glyceraldehyde-3- 20.5 1.4E+02 0.0047 32.0 6.4 42 261-306 83-127 (337)
451 3e82_A Putative oxidoreductase 20.4 1.7E+02 0.0058 31.1 7.2 64 410-496 62-125 (364)
452 2j6i_A Formate dehydrogenase; 20.3 96 0.0033 33.5 5.2 106 201-325 163-277 (364)
453 3gbv_A Putative LACI-family tr 20.3 3.7E+02 0.013 26.5 9.5 91 81-177 125-220 (304)
454 4hkt_A Inositol 2-dehydrogenas 20.3 1.6E+02 0.0054 30.7 6.8 83 411-516 59-141 (331)
455 3sc6_A DTDP-4-dehydrorhamnose 20.2 89 0.0031 31.3 4.7 20 204-223 7-30 (287)
456 3rft_A Uronate dehydrogenase; 20.2 4.8E+02 0.016 25.7 10.3 89 203-305 4-111 (267)
457 3grc_A Sensor protein, kinase; 20.2 3.5E+02 0.012 23.2 8.2 116 361-510 7-128 (140)
458 1vkn_A N-acetyl-gamma-glutamyl 20.1 1.5E+02 0.0051 32.0 6.6 102 204-331 15-157 (351)
459 3e18_A Oxidoreductase; dehydro 20.0 3.5E+02 0.012 28.5 9.6 83 411-516 61-143 (359)
460 2z1m_A GDP-D-mannose dehydrata 20.0 2.8E+02 0.0095 28.2 8.6 22 202-223 3-28 (345)
No 1
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-112 Score=1007.72 Aligned_cols=523 Identities=65% Similarity=1.085 Sum_probs=448.8
Q ss_pred CcccccchhchHHHHHhhCC-CCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHH
Q psy16953 1 MSAKAISEATGKDIINRNLD-PNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKG 79 (806)
Q Consensus 1 ms~k~i~Ey~~K~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e 79 (806)
||+|+|+|||||+||++|+. +++..++.++++++..++|+|++++++||++.++|||||+|+|+|||+|||||++|++|
T Consensus 1 ms~k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eE 80 (829)
T 3pff_A 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDG 80 (829)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHH
T ss_pred CCchhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHH
Confidence 99999999999999999999 46666788888899999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHcCCee-------------------------------------------------------------------
Q psy16953 80 AQSWISERMGKDQ------------------------------------------------------------------- 92 (806)
Q Consensus 80 ~~~~~~~~~g~~i------------------------------------------------------------------- 92 (806)
|++|+++++|+.+
T Consensus 81 a~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~gl 160 (829)
T 3pff_A 81 VKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKL 160 (829)
T ss_dssp HHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTCCC
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCcccc
Confidence 9999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 161 ~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dgv~ALDAKi~lDDnA~fR~~~~~~~~~~~~ 240 (829)
T 3pff_A 161 NPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240 (829)
T ss_dssp CHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCCEEEEEGGGHHHHHHHHCSCCCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCceEEEeceeeeccchhhhCchhhhhhhccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 241 ~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGga~~e~v~~~~ 320 (829)
T 3pff_A 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYA 320 (829)
T ss_dssp CSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESCCCHHHHHHHH
T ss_pred cccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCCCCHHHHHHHH
Confidence
Q ss_pred ---------------EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCc
Q psy16953 93 ---------------VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGI 157 (806)
Q Consensus 93 ---------------~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~ 157 (806)
..+||||||+|||+||+||+|||+|++++.+++.+.++||||||.|||++||+++|+++|++||+
T Consensus 321 ~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~lgl 400 (829)
T 3pff_A 321 KTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGI 400 (829)
T ss_dssp HHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccccCC
Confidence 78999999999999999999999999998776667899999999999999999999999999999
Q ss_pred cEEEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccccC-----------------------------------------
Q psy16953 158 PLFVFGPETHMTAIVGMALGKKEIPSETSADGATANFLL----------------------------------------- 196 (806)
Q Consensus 158 ~i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 196 (806)
||++||+|||||++|.||++++|+|++++.+.+|+|||+
T Consensus 401 ~i~v~g~e~~mt~iv~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (829)
T 3pff_A 401 PIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP 480 (829)
T ss_dssp CEEEECTTSCTTHHHHHHHTSSCCC-------------------------------------------------------
T ss_pred cEEEeCCcccHHHHHHHHhcccCCCCCCCccccccceeccCCCCCCCCCCCccccccccccccCCccccccccccccccc
Confidence 999999999999999999999999999999988998865
Q ss_pred ----------CCCCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHh
Q psy16953 197 ----------PGGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAM 266 (806)
Q Consensus 197 ----------~~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~dai 266 (806)
+.|+++|||+|||+++|.+++|++|||+|+|.++++.|.|+|.+.+++|++|||.+++|+|||+|++|+.
T Consensus 481 ~~~~~~~~~~~l~~~~trviV~G~tg~~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~ 560 (829)
T 3pff_A 481 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAM 560 (829)
T ss_dssp ------CCCSCCCCTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHH
T ss_pred ccccccccceeeecCCCeEEEECCcHHHHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCCcCCcccCCcHHHHh
Confidence 2278899999999999999999999999999999999988888887789999999999999999999954
Q ss_pred cc--CCCeeEEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccc
Q psy16953 267 SK--NKDADVLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIG 343 (806)
Q Consensus 267 p~--~~Dlavivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig 343 (806)
++ .+|++|| ++|+..+++++++|.+ +|||.+||||+||+|.++++|+++|+++|+||+||||+|++||+++++|
T Consensus 561 ~~~p~~DlaVI---~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~rliGPNc~Gii~p~~~~ig 637 (829)
T 3pff_A 561 RKHPEVDVLIN---FASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIG 637 (829)
T ss_dssp HHCTTCCEEEE---CCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCEEETTTEECT
T ss_pred hccCCCcEEEE---eCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCEEEcCCCcccCcccccccc
Confidence 44 3688877 4566778888999988 9999999999999999999999999999999999999999999988898
Q ss_pred cCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEE
Q psy16953 344 NTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLG 423 (806)
Q Consensus 344 ~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~ 423 (806)
++.|++.+++|...++||+||+|||||++++++++|+.++|+|||++||+||++++|+++.|+|+||.+||+|++|++|+
T Consensus 638 ~~~g~lna~~~~~~~~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~ 717 (829)
T 3pff_A 638 NTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLG 717 (829)
T ss_dssp TTTCSHHHHHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEE
T ss_pred ccccccccccccccCCCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEE
Confidence 87776666667667899999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHH
Q psy16953 424 EVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDII 503 (806)
Q Consensus 424 Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~ 503 (806)
|+||-++.+.++++++.+++||||+||+|||++.|.+++++|||||++|++..|+.+|+++|||+|+++++|++||++++
T Consensus 718 Ei~g~~f~~aA~~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v~~~~el~~~~ 797 (829)
T 3pff_A 718 EIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEII 797 (829)
T ss_dssp ESSSSHHHHHHHHHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHH
T ss_pred ecCchHHHHHHHHHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEcCCHHHHHHHH
Confidence 97654333344444433689999999999999822268899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccCCCCCCCC
Q psy16953 504 GSVYKDLVSRGDIVPQPELPPPT 526 (806)
Q Consensus 504 ~all~~L~~~g~i~~~~~~P~~~ 526 (806)
+.++++|+.+|+|+|.+|+||..
T Consensus 798 ~~~~~~l~~~~~~~~~~~~~~~~ 820 (829)
T 3pff_A 798 QSVYEDLVANGVIVPAQEVPAAL 820 (829)
T ss_dssp HHHHHHHHHTTSCCC--------
T ss_pred HHHHHHHHHCCcEeeCCCCCchh
Confidence 99999999999999999987753
No 2
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=100.00 E-value=3.1e-74 Score=626.72 Aligned_cols=327 Identities=75% Similarity=1.240 Sum_probs=289.1
Q ss_pred CCCCCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccC--CCeeEE
Q psy16953 198 GGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKN--KDADVL 275 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~--~Dlavi 275 (806)
.|+++|||+|||++++..++|+++||+|.|.++++.|.|+|...+|+|+++||.+++++|||+|++|+++++ +|++|+
T Consensus 6 l~~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~DlaVi 85 (334)
T 3mwd_B 6 LFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLIN 85 (334)
T ss_dssp CCCTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCCEEEE
T ss_pred ccCCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCCcEEEE
Confidence 489999999999999999999999999999998888888887776679999999999999999999965554 466555
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccccccc
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHS 355 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~ 355 (806)
|++++.+.++++|+|.++|+|.+||||+||+|+++++|+++|+++|+||+||||+|++||+++++|++.+.+.+++|.
T Consensus 86 --~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a~~~~ 163 (334)
T 3mwd_B 86 --FASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILAS 163 (334)
T ss_dssp --CCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHHHHHT
T ss_pred --ecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCCccccCcchhhcccccccccccccc
Confidence 888888889999999999999999999999999999999999999999999999999999988988654433334555
Q ss_pred CCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHH
Q psy16953 356 KLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCA 435 (806)
Q Consensus 356 ~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~ 435 (806)
..++||+||+|||||++++++++|+.++|+|||++||+||++++|+|+.|+|+||.+||+||+|++|+|+||..|++|++
T Consensus 164 ~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~~~ 243 (334)
T 3mwd_B 164 KLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICR 243 (334)
T ss_dssp TTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHH
T ss_pred cCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCc
Q psy16953 436 ALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGD 515 (806)
Q Consensus 436 a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~ 515 (806)
++|+.+++||||+||+|||++.||+++++|||||++++|..|+.+|+++|||+|+++++|++||++.++.++++|+.+|+
T Consensus 244 ~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~l~~~~~ 323 (334)
T 3mwd_B 244 GIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVANGV 323 (334)
T ss_dssp HHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHHHHCCc
Confidence 99998899999999999999866789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q psy16953 516 IVPQPELPPPT 526 (806)
Q Consensus 516 i~~~~~~P~~~ 526 (806)
|+|.+|+|||+
T Consensus 324 ~~~~~~~~~~~ 334 (334)
T 3mwd_B 324 IVPAQEVPPPT 334 (334)
T ss_dssp CCCCCCCCCCC
T ss_pred EeeCCCCCCCC
Confidence 99999998885
No 3
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.8e-57 Score=490.29 Aligned_cols=278 Identities=27% Similarity=0.439 Sum_probs=225.6
Q ss_pred CCCCCceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc--C-
Q psy16953 198 GGQEQTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK--N- 269 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~--~- 269 (806)
.|+++++++|+|++++ .+++|+++|| . .||||||+.. .+++ |+|||+|++| +++ .
T Consensus 9 l~~~~~~vvV~Gasg~~G~~~~~~l~~~g~---------~-~v~~VnP~~~------g~~i~G~~vy~sl~e-l~~~~~~ 71 (297)
T 2yv2_A 9 LVDSETRVLVQGITGREGSFHAKAMLEYGT---------K-VVAGVTPGKG------GSEVHGVPVYDSVKE-ALAEHPE 71 (297)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHHTC---------E-EEEEECTTCT------TCEETTEEEESSHHH-HHHHCTT
T ss_pred hhCCCCEEEEECCCCCHHHHHHHHHHhCCC---------c-EEEEeCCCCC------CceECCEeeeCCHHH-HhhcCCC
Confidence 4889999999999877 4789999998 6 8999999842 1344 6999999999 677 5
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCc
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMM 349 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~ 349 (806)
+|++++ .+|+..+++++++|.++|++.+|++|+||+|+++++|.++|+++|+|++||||+|++||+..+++
T Consensus 72 ~DvaIi---~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~Gii~~~~~~~~------ 142 (297)
T 2yv2_A 72 INTSIV---FVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNCPGAITPGQAKVG------ 142 (297)
T ss_dssp CCEEEE---CCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSSCEEEETTTEEEE------
T ss_pred CCEEEE---ecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCCeeEccccccee------
Confidence 888877 45667889999999999999999999999999999999999999999999999999999843332
Q ss_pred ccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 350 DNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
+ +|...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| ++.
T Consensus 143 -~-~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E--~~~ 218 (297)
T 2yv2_A 143 -I-MPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGE--IGG 218 (297)
T ss_dssp -S-CCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEC--SSS
T ss_pred -e-cccCCCCCCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe--eCC
Confidence 2 344457899999999999999999999999999999999999995559999999999999999999999999 555
Q ss_pred h-HH-HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 430 E-YE-VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 430 d-~~-f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
+ ++ +.+.+++.+++||||+||+|||++ ..+++|||||+++....++.+|+++|||+|+++++|++||++.++.++
T Consensus 219 ~~~~~~~~~~~~~~~~KPVv~~k~G~s~~---~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~ 295 (297)
T 2yv2_A 219 DMEERAAEMIKKGEFTKPVIAYIAGRTAP---PEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKAL 295 (297)
T ss_dssp SHHHHHHHHHHTTSCCSCEEEEESCCC---------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC
T ss_pred CHHHHHHHHHHhccCCCCEEEEEeCCCCc---cccccCCccccccCCCCCHHHHHHHHHHcCCeEeCCHHHHHHHHHHHh
Confidence 5 44 444555557899999999999995 234489999999655555566999999999999999999999998876
Q ss_pred H
Q psy16953 508 K 508 (806)
Q Consensus 508 ~ 508 (806)
.
T Consensus 296 ~ 296 (297)
T 2yv2_A 296 R 296 (297)
T ss_dssp -
T ss_pred h
Confidence 3
No 4
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=100.00 E-value=7e-57 Score=487.20 Aligned_cols=282 Identities=27% Similarity=0.375 Sum_probs=247.4
Q ss_pred CCCCCceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc--CC
Q psy16953 198 GGQEQTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK--NK 270 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~--~~ 270 (806)
.|+++++++|||++++ .+++|+++|| . .+|||||+.. .+++ |+|||+|++| +|+ .+
T Consensus 10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~---------~-~v~~VnP~~~------g~~i~G~~vy~sl~e-l~~~~~v 72 (305)
T 2fp4_A 10 YVDKNTKVICQGFTGKQGTFHSQQALEYGT---------N-LVGGTTPGKG------GKTHLGLPVFNTVKE-AKEQTGA 72 (305)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHTC---------E-EEEEECTTCT------TCEETTEEEESSHHH-HHHHHCC
T ss_pred HhCCCcEEEEECCCCCHHHHHHHHHHHCCC---------c-EEEEeCCCcC------cceECCeeeechHHH-hhhcCCC
Confidence 4889998888899766 4889999998 6 7899999842 1355 6999999999 788 89
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHc-CCeEEccCccccccCCccccccCCCCc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEK-GVSIIGPATVGGLKPGCFKIGNTGGMM 349 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~-giriiGPN~~Gii~p~~~~ig~~~g~~ 349 (806)
|++++ ++|++.+++++++|.++|+|.++++++||+++++++++++|+++ |++++||||+|+++|+..+++
T Consensus 73 D~avI---~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~Gii~p~~~~~~------ 143 (305)
T 2fp4_A 73 TASVI---YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG------ 143 (305)
T ss_dssp CEEEE---CCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCEEEETTTEEEE------
T ss_pred CEEEE---ecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCeEeccccccee------
Confidence 99888 56778899999999999999999999999999899999999999 999999999999999843332
Q ss_pred ccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCc-
Q psy16953 350 DNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGV- 428 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~- 428 (806)
++|...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+|++|.
T Consensus 144 --~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~ 221 (305)
T 2fp4_A 144 --IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNA 221 (305)
T ss_dssp --SSCGGGCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSH
T ss_pred --eccccCCCCCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCch
Confidence 44545678999999999999999999999999999999999999966699999999999999999999999996555
Q ss_pred -ch-HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHH
Q psy16953 429 -EE-YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSV 506 (806)
Q Consensus 429 -~d-~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~al 506 (806)
+| ++|++++++++++||||+||+|||++ ..+++||||++++....++.+|+++|||+|++++++++||++.++.+
T Consensus 222 e~~~~~f~~~~~~~~~~KPVv~~k~G~s~~---~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~ 298 (305)
T 2fp4_A 222 EENAAEFLKQHNSGPKSKPVVSFIAGLTAP---PGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKE 298 (305)
T ss_dssp HHHHHHHHHHHSCSTTCCCEEEEEECTTCC---TTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCEEEEEecCCcc---ccccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 45 78999988766899999999999995 23339999999966556667799999999999999999999999999
Q ss_pred HHhh
Q psy16953 507 YKDL 510 (806)
Q Consensus 507 l~~L 510 (806)
+.+.
T Consensus 299 ~~~~ 302 (305)
T 2fp4_A 299 FEKR 302 (305)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8644
No 5
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-57 Score=484.98 Aligned_cols=277 Identities=30% Similarity=0.404 Sum_probs=225.7
Q ss_pred CCCCCCceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc--C
Q psy16953 197 PGGQEQTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK--N 269 (806)
Q Consensus 197 ~~~~~~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~--~ 269 (806)
..|+++++++|+|++++ .+++|+++|| . .||||||+.. .+++ |+|||+|++| +++ .
T Consensus 8 ~l~~~~~~v~V~Gasg~~G~~~~~~l~~~g~---------~-~V~~VnP~~~------g~~i~G~~vy~sl~e-l~~~~~ 70 (294)
T 2yv1_A 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGT---------K-IVGGVTPGKG------GQNVHGVPVFDTVKE-AVKETD 70 (294)
T ss_dssp CSSCTTCCEEEETTTSHHHHHHHHHHHHTTC---------C-EEEEECTTCT------TCEETTEEEESSHHH-HHHHHC
T ss_pred HHhCCCCEEEEECCCCCHHHHHHHHHHhCCC---------e-EEEEeCCCCC------CceECCEeeeCCHHH-HhhcCC
Confidence 34889999999999877 4889999998 6 8999999842 1344 6999999999 788 8
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCc
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMM 349 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~ 349 (806)
+|++++ .+|+..+++++++|.++|++.+|++++||+|+++++|.++|+++|+|++||||+|++||+..+++
T Consensus 71 ~Dv~ii---~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~Gii~~~~~~~~------ 141 (294)
T 2yv1_A 71 ANASVI---FVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPGIASPKVGKLG------ 141 (294)
T ss_dssp CCEEEE---CCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCEEEETTTEEEE------
T ss_pred CCEEEE---ccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCceeeccCcceee------
Confidence 998887 55777889999999999999999999999999999999999999999999999999999843333
Q ss_pred ccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcc
Q psy16953 350 DNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429 (806)
Q Consensus 350 ~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~ 429 (806)
++|...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| ++.
T Consensus 142 --~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E--~~g 217 (294)
T 2yv1_A 142 --IIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGE--IGG 217 (294)
T ss_dssp --CCCGGGCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEE--SSS
T ss_pred --ecccCCCCCCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe--eCC
Confidence 2344457899999999999999999999999999999999999995559999999999999999999999999 565
Q ss_pred h-HH-HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 430 E-YE-VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 430 d-~~-f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
+ ++ +++.+++ ++||||+||+|||++ ..+++|||||+++....++.+|+++|||+|++++++++||++.++.++
T Consensus 218 ~~~~~~~~~~~~--~~KPVv~~k~G~~~~---~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~ 292 (294)
T 2yv1_A 218 GAEEEAAKFIEK--MKKPVIGYIAGQSAP---EGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGIL 292 (294)
T ss_dssp SHHHHHHHHHTT--CSSCEEEEEECC----------------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--CCCCEEEEEecCCCC---ccccCCchhhhccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence 5 44 4555554 799999999999995 233489999999655555566999999999999999999999999887
Q ss_pred H
Q psy16953 508 K 508 (806)
Q Consensus 508 ~ 508 (806)
.
T Consensus 293 ~ 293 (294)
T 2yv1_A 293 G 293 (294)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=100.00 E-value=1.1e-56 Score=482.29 Aligned_cols=275 Identities=29% Similarity=0.408 Sum_probs=223.7
Q ss_pred CCCCceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc--CCC
Q psy16953 199 GQEQTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK--NKD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~--~~D 271 (806)
++++++|+|+|++++ .+++|+++|| . .+|||||+.. | +++ |+|||+|++| +++ .+|
T Consensus 4 ~~~~~~VaVvGasG~~G~~~~~~l~~~g~---------~-~v~~VnP~~~-----g-~~i~G~~vy~sl~e-l~~~~~~D 66 (288)
T 1oi7_A 4 VNRETRVLVQGITGREGQFHTKQMLTYGT---------K-IVAGVTPGKG-----G-MEVLGVPVYDTVKE-AVAHHEVD 66 (288)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTC---------E-EEEEECTTCT-----T-CEETTEEEESSHHH-HHHHSCCS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHcCC---------e-EEEEECCCCC-----C-ceECCEEeeCCHHH-HhhcCCCC
Confidence 788999999999877 4789999998 5 7899999842 1 345 6999999999 788 899
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDN 351 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~ 351 (806)
++++ .+|++.+++++++|.++|++.+|++|+||++++++++.++|+++|++++||||+|++||+..+++ +
T Consensus 67 v~Ii---~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~Gii~~~~~~~~-------~ 136 (288)
T 1oi7_A 67 ASII---FVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGIISAEETKIG-------I 136 (288)
T ss_dssp EEEE---CCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCEEEETTTEEEE-------S
T ss_pred EEEE---ecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCeEEcCCCceeE-------E
Confidence 8887 55777889999999999999999999999999999999999999999999999999999843332 2
Q ss_pred ccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 352 ILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 352 ~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
+|...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| ++.+
T Consensus 137 -~~~~~~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E--~~~~~ 213 (288)
T 1oi7_A 137 -MPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGE--IGGSD 213 (288)
T ss_dssp -SCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEEC--SSSSH
T ss_pred -cccCCCCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe--eCCCH
Confidence 344457899999999999999999999999999999999999995559999999999999999999999999 6665
Q ss_pred HHHHH-HHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 431 YEVCA-ALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 431 ~~f~~-a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
+++.+ ++++ +++||||+||+|||++ ..+++|||||+++....++.+|+++|||+|+++++|++||++.++.++
T Consensus 214 ~~~~~~~~~~-~~~KPVv~~k~G~~~~---~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~ 287 (288)
T 1oi7_A 214 EEEAAAWVKD-HMKKPVVGFIGGRSAP---KGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287 (288)
T ss_dssp HHHHHHHHHH-HCCSCEEEEESCC---------------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCEEEEEecCCCC---ccccCcchhhcccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence 44443 4443 6899999999999995 233399999999554455556999999999999999999999998876
No 7
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=100.00 E-value=1.4e-54 Score=466.00 Aligned_cols=276 Identities=29% Similarity=0.418 Sum_probs=236.3
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc--CCC
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK--NKD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~--~~D 271 (806)
++++++|+|+|++++. +++|+++|| . .++||||+.. | +++ |+|+|+|++| +++ .+|
T Consensus 4 ~~~~~rVaViG~sG~~G~~~~~~l~~~g~---------~-~V~~V~p~~~-----g-~~~~G~~vy~sl~e-l~~~~~~D 66 (288)
T 2nu8_A 4 IDKNTKVICQGFTGSQGTFHSEQAIAYGT---------K-MVGGVTPGKG-----G-TTHLGLPVFNTVRE-AVAATGAT 66 (288)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTC---------E-EEEEECTTCT-----T-CEETTEEEESSHHH-HHHHHCCC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC---------e-EEEEeCCCcc-----c-ceeCCeeccCCHHH-HhhcCCCC
Confidence 7889999999997764 788888887 5 7899999731 1 334 6999999999 687 788
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCccc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDN 351 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~ 351 (806)
++++ ++|+....+++++|.++|++.+|++++||+++++++|+++|+++|++++||||+|++||+..+++
T Consensus 67 ~viI---~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc~Gi~~p~~~~~~-------- 135 (288)
T 2nu8_A 67 ASVI---YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPGVITPGECKIG-------- 135 (288)
T ss_dssp EEEE---CCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSCCEEEETTTEEEE--------
T ss_pred EEEE---ecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCcceecCCcceeE--------
Confidence 8877 55777888899999889999999999999999999999999999999999999999999843322
Q ss_pred ccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 352 ILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 352 ~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
++|...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| ++.+
T Consensus 136 ~~~~~~~~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E--~~~~~ 213 (288)
T 2nu8_A 136 IQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGE--IGGSA 213 (288)
T ss_dssp SSCTTSCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEE--SSSSH
T ss_pred ecccCCCCCCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe--eCCCH
Confidence 4555567899999999999999999999999999999999999995559999999999999999999999999 5554
Q ss_pred HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 431 YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 431 ~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
++|.+...+++++||||+||+|||++ ..+++||||++++....++.+|+++|||+|+++++|++||++.++.++
T Consensus 214 ~~~~~~~~~~~~~KPVv~~k~G~~~~---~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 214 EEEAAAYIKEHVTKPVVGYIAGVTAP---KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVL 287 (288)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECTTCC---TTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEECSSGGGHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCc---ccccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence 44443333336899999999999995 223389999999665566667999999999999999999999998765
No 8
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=100.00 E-value=9e-55 Score=495.12 Aligned_cols=266 Identities=22% Similarity=0.313 Sum_probs=224.5
Q ss_pred CCCCCceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccC
Q psy16953 198 GGQEQTKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKN 269 (806)
Q Consensus 198 ~~~~~t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~ 269 (806)
.|+| ++|+|+|++.+ .+++|+++| .|.||||||++ +++ |+|||+|++| +|+.
T Consensus 5 l~~p-~siAVvGas~~~~~~g~~v~~~l~~~g----------~~~v~pVnP~~--------~~i~G~~~y~sl~~-lp~~ 64 (457)
T 2csu_A 5 FFNP-KGIAVIGASNDPKKLGYEVFKNLKEYK----------KGKVYPVNIKE--------EEVQGVKAYKSVKD-IPDE 64 (457)
T ss_dssp TTSC-SEEEEETCCSCTTSHHHHHHHHHTTCC----------SSEEEEECSSC--------SEETTEECBSSTTS-CSSC
T ss_pred hcCC-CeEEEECcCCCCCchHHHHHHHHHHcC----------CCEEEEECCCC--------CeECCEeccCCHHH-cCCC
Confidence 3554 57899999954 378998876 67999999994 455 6999999999 8999
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH------HHHHHHHHHHHHcCCeEEccCccccccCCccccc
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE------NMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIG 343 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E------~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig 343 (806)
+|+++| ++|+..+++++++|.++|+|.+|++++||+| +.+++++++|+++|+|++||||+|+++|+
T Consensus 65 ~Dlavi---~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~Gv~~~~----- 136 (457)
T 2csu_A 65 IDLAII---VVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIMNTH----- 136 (457)
T ss_dssp CSEEEE---CSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEEEGG-----
T ss_pred CCEEEE---ecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcceEEccC-----
Confidence 999988 6688899999999999999999999999987 24899999999999999999999999998
Q ss_pred cCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEE
Q psy16953 344 NTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLG 423 (806)
Q Consensus 344 ~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~ 423 (806)
.+++.+|+|.. +. |+||+|||||++++++++|+.++|+|||++||+||+ +|+++.|+|+||.+||+||+|++|+
T Consensus 137 --~~~~~~~~~~~-~~-G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~d~l~~~~~D~~t~~I~l~~ 210 (457)
T 2csu_A 137 --VDLNATFITVA-KK-GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNM--ADVDFAELMEYLADTEEDKAIALYI 210 (457)
T ss_dssp --GTEEEESSCCC-EE-CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTC--CSSCHHHHHHHHTTCSSCCEEEEEE
T ss_pred --CCceeeecCCC-CC-CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCc--CCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 56677787753 34 999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred ccCCcch-HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHH
Q psy16953 424 EVGGVEE-YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502 (806)
Q Consensus 424 Eigg~~d-~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~ 502 (806)
| ++.| ++|++++|+++++||||++|+|||++ |+++++||||+++|++.+ |+++|||+|+++++|++|+.+.
T Consensus 211 E--~i~~~~~f~~~a~~~~~~KPVv~~k~G~~~~--g~~aa~~Htgalag~~~~----~~AafRqaGv~~v~~~~El~~~ 282 (457)
T 2csu_A 211 E--GVRNGKKFMEVAKRVTKKKPIIALKAGKSES--GARAASSHTGSLAGSWKI----YEAAFKQSGVLVANTIDEMLSM 282 (457)
T ss_dssp S--CCSCHHHHHHHHHHHHHHSCEEEEECC--------------------CHHH----HHHHHHHTTCEEESSHHHHHHH
T ss_pred e--cCCCHHHHHHHHHHhcCCCCEEEEEcCCCcc--ccchhhcccCccCCcHHH----HHHHHHhCCCeEECCHHHHHHH
Confidence 9 9999 99999999988899999999999999 899999999999998877 9999999999999999999886
Q ss_pred HHH
Q psy16953 503 IGS 505 (806)
Q Consensus 503 ~~a 505 (806)
.+.
T Consensus 283 ~~~ 285 (457)
T 2csu_A 283 ARA 285 (457)
T ss_dssp HTT
T ss_pred HHH
Confidence 643
No 9
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=9.7e-55 Score=478.81 Aligned_cols=210 Identities=22% Similarity=0.305 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHHHHHH
Q psy16953 572 NMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALNDAAI 650 (806)
Q Consensus 572 ~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~~a~~ 650 (806)
++||++||++||++++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||+++| ||+||||+++|++
T Consensus 152 ~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St-~tarvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ 230 (375)
T 3tqg_A 152 DLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNAST-FAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAMD 230 (375)
T ss_dssp CSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTSHHHHCHHHHHHH
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHH-HHHHHHHccCCCHHHHHHHHHHhccCcccCCHHHHHHH
Confidence 48999999999999999999999999999999999999999 999999999999999999999999 9999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCCCCc
Q psy16953 651 QFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVEKITTSKKPNL 727 (806)
Q Consensus 651 ~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve~~~~~~~~~l 727 (806)
||+++. ++++++++|++++++|++|||||||||+ +.|||+++|+++++++. +.+++++++.++|+++.+. +++
T Consensus 231 ml~~i~-~~~~~~~~v~~~~~~~~~i~GfGHrVyk--~~DPRa~~l~~~a~~l~~~~~~~~~~~~a~~le~~~~~~-k~l 306 (375)
T 3tqg_A 231 LIMLYK-TPSEAIAGIKRKLANKELIMGFGHAVYR--ERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTMQDE-KKL 306 (375)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHTCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHTTTSTTTHHHHHHHHHHHHHHHH-HCC
T ss_pred HHHHhc-ChhHHHHHHHHHHhcCCCccCCCCCCCC--CCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCC
Confidence 999884 4568899999999999999999999996 47999999999999984 4689999999999998664 589
Q ss_pred cCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcceecCCCC
Q psy16953 728 ILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 728 ~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
+||||||+|+++.+||+ |.+++++||++||++||+||++||+.. ++++||+ ..|+||+.
T Consensus 307 ~pNVDf~sg~i~~~lGi--------------p~~~~t~lFa~sR~~Gw~AH~~Eq~~~-~~iiRP~---~~Y~G~~~ 365 (375)
T 3tqg_A 307 FPNLDFYSATAYHFLNI--------------PTKLFTPIFVMSRVTGWCAHIFEQRKD-NRIIRPN---ADYIGPEE 365 (375)
T ss_dssp CBCHHHHHHHHHHHTTC--------------CGGGHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCE---EEECSCCC
T ss_pred CCChHHHHHHHHHHcCC--------------CHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCCCc---ceecCCCC
Confidence 99999999999999984 345668999999999999999999986 5899998 56999864
No 10
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=6.2e-54 Score=471.50 Aligned_cols=221 Identities=21% Similarity=0.222 Sum_probs=201.3
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||++++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 133 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St-~aarv~aSt~~d~~savaagi~aL~Gp 210 (363)
T 2c6x_A 133 RGEQAIA-PSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNAST-FSARVTLSTESDLVSAVTAALGTMKGP 210 (363)
T ss_dssp TTCCCCC-CCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHHST
T ss_pred cCCCCcC-CCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHH-HHHHHHHhcCccHHHHHHHHHHHcccC
Confidence 4666543 34589999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKI 719 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~ 719 (806)
+||||+++|++||+++. ++++++++|++.++++++|||||||||+ +.|||+++|+++++++.+.+++++++.++|++
T Consensus 211 lHGGAne~v~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GfGHrvyk--~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~ 287 (363)
T 2c6x_A 211 LHGGAPSAVTKMLEDIG-EKEHAEAYLKEKLEKGERLMGFGHRVYK--TKDPRAEALRQKAEEVAGNDRDLDLALHVEAE 287 (363)
T ss_dssp TSSCCCHHHHHHHHTCC-SSTTHHHHHHHHHHTTCCCTTBCCSSCS--SCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHhC-ChhhHHHHHHHHHHcCCcccCCCCcccC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999984 6789999999999999999999999996 46999999999999997789999999999999
Q ss_pred HhcC------CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCC
Q psy16953 720 TTSK------KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHP 793 (806)
Q Consensus 720 ~~~~------~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~ 793 (806)
+.+. .++++||||||+|++|++||+| .+++++||++||++||+||++||+..+ +|+||+
T Consensus 288 ~~~~~g~yf~~k~l~pNVD~~sg~i~~~lG~p--------------~~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~ 352 (363)
T 2c6x_A 288 AIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFD--------------DELFTPTFSASRMVGWCAHVLEQAENN-MIFRPS 352 (363)
T ss_dssp HHHHHHHHSCSSCCCBCTHHHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCE
T ss_pred HHHhhccccccCCCCcChHHHHHHHHHHhCCC--------------hhhhhhhhHHhccccHHHHHHHHHHcC-CccCCc
Confidence 8653 2689999999999999999844 455679999999999999999999875 999998
Q ss_pred CCcceecCCCC
Q psy16953 794 WDDISYVLPEQ 804 (806)
Q Consensus 794 ~~~i~Y~gp~~ 804 (806)
..|+||+.
T Consensus 353 ---~~Y~G~~~ 360 (363)
T 2c6x_A 353 ---AQYTGAIP 360 (363)
T ss_dssp ---EEECSCCC
T ss_pred ---cccCCCCC
Confidence 46999975
No 11
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=4.9e-54 Score=478.74 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=196.4
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhcc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLT 636 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~a 636 (806)
.|.++... .+++||++||++|+++. +|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||+++
T Consensus 186 ~G~~~~~p-~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST-~taRvvaSt~ad~ysavaAgi~a 263 (427)
T 3msu_A 186 HGKKFLEP-KMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQNAST-STVRLSGSTGNSPYAAIIAGITA 263 (427)
T ss_dssp TTCCCCCC-CTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCCCCCC-CCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCCCChhH-HHHHHHHccCCCHHHHHHHHHHH
Confidence 47666432 35799999999999998 88999999999999999999999999 99999999999999999999999
Q ss_pred c-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCC--cccccCCCCCCCCCCChHHHHHHHHHHHh-----CCCCh
Q psy16953 637 I-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGK--LIMGIGHRVKSINNPDMRVKIIKEFVLQN-----FPTTP 708 (806)
Q Consensus 637 l-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~--~ipGfGH~vy~~~~~DPRa~~L~~~~~~~-----~~~~~ 708 (806)
| ||+||||+++|++||+++. +++++++||++.+++++ +|||||||||+ +.|||+++|+++++++ .+.+|
T Consensus 264 L~GPlHGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk--~~DPRa~~Lk~~a~~l~~~~g~~~~~ 340 (427)
T 3msu_A 264 LWGPAHGGANEAVLKMLSEIG-STENIDKYIAKAKDKDDPFRLMGFGHRVYK--NTDPRATAMKKNCEEILAKLGHSDNP 340 (427)
T ss_dssp HTSHHHHCHHHHHHHHHHHHC-STTHHHHHHHHHHTC-----CCSBCCSSSS--SCCHHHHHHHHHTHHHHHHGGGCSSH
T ss_pred ccCCccCCHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCcCcCCCCCCCCC--CCCccHHHHHHHHHHHHHHhCCCCcH
Confidence 9 9999999999999999985 56789999999999999 99999999996 4799999999999876 23789
Q ss_pred HHHHHHHHHHHHhc----CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhh
Q psy16953 709 LLNYALEVEKITTS----KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKR 784 (806)
Q Consensus 709 ~~~~a~~ve~~~~~----~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~ 784 (806)
+++++.++|+++.+ +.++++||||||+|+++.+||+| .+++++||++||++||+|||+||+.
T Consensus 341 ~~~la~~le~~a~~d~~~~~k~l~pNVDfysg~i~~~lGip--------------~~~ft~lFaisR~~Gw~AH~~Eq~~ 406 (427)
T 3msu_A 341 LLTVAKKLEEIALQDEFFIERKLFSNVDFYSGIILKAMGIP--------------EDMFTAIFALARTSGWISQWIEMVN 406 (427)
T ss_dssp HHHHHHHHHHHHC------CCCCCBCHHHHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccCCCCChHHHHHHHHHHcCCC--------------ccccceehhHHhHHHHHHHHHHHHh
Confidence 99999999999865 25689999999999999999844 4566799999999999999999998
Q ss_pred cC-CCcccCCCCcceecCCCC
Q psy16953 785 LK-QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 785 ~~-~~i~Rp~~~~i~Y~gp~~ 804 (806)
.+ ++|+||+ ..|+||+.
T Consensus 407 ~p~~rI~RPr---~~Y~G~~~ 424 (427)
T 3msu_A 407 DPAQKIGRPR---QLYTGATN 424 (427)
T ss_dssp CTTCCCCCCE---EEECSCCS
T ss_pred CCCCceeCCC---ceecCCCC
Confidence 74 7899998 46999975
No 12
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-54 Score=472.22 Aligned_cols=219 Identities=25% Similarity=0.326 Sum_probs=196.9
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||++++ +..+++||++||||||||+|+|| ||+|+++||++|+|+|++||+++| ||
T Consensus 134 ~g~~~i~-p~~~l~~a~nfl~ml~~~~--~~~~~~ld~~LvL~ADHg~NaST-ftaRvvaSt~ad~ysavaagi~aL~GP 209 (367)
T 2p2w_A 134 KGKELIR-PRKDLSHVENFYYMMFGER--NEKIRLLESAFILLMEQDINAST-FAALVIASTLSDLYSCIVGALGALKGP 209 (367)
T ss_dssp TTCCCCC-CCTTSCHHHHHHHHHHSCC--CTTHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHHST
T ss_pred cCCCCCC-CCCCCCHHHHHHHHhcCCC--hHHHHHHHHHHhHhccCCCchHH-HHHHHHHhcCccHHHHHHHHHHHccCC
Confidence 3655543 3468999999999999876 67899999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKI 719 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~ 719 (806)
+||||+++|++||+++. +.++++++|++.++++++|||||||||+ +.|||+++|+++++++.+.+++++++.++|++
T Consensus 210 lHGGAne~v~~ml~ei~-~~~~~~~~i~~~l~~~~~i~GfGHrVyk--~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~ 286 (367)
T 2p2w_A 210 LHGGASEKVPPMLEEIG-SEDRVEEFVQKCLKEKRKIMGFGHRVYK--TYDPRAVFLKRVLQEHFPDSKLFRIASKLEEY 286 (367)
T ss_dssp TTTTHHHHHHHHHHHHC-SGGGHHHHHHHHHHHTCCCTTBCCSSCS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhc-CchhHHHHHHHHHHcCCccccCCccccC--CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999985 5678999999999999999999999996 46999999999999985568999999999999
Q ss_pred HhcCC-CCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcce
Q psy16953 720 TTSKK-PNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDIS 798 (806)
Q Consensus 720 ~~~~~-~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~ 798 (806)
+.+.+ ++++||||||+|++|++||+|. +++++||++||++||+||++||++. ++|+||++ .
T Consensus 287 ~~~~~~k~l~pNVDf~sg~v~~~lGip~--------------~~~t~lFai~R~~Gw~AH~~Eq~~~-~~iiRP~~---~ 348 (367)
T 2p2w_A 287 IVSNKIKNIYPNVDLYSSVLFEELGFPR--------------NMFTALFATARVVGWTAHVIEYVSD-NKLIRPTS---E 348 (367)
T ss_dssp HHHTTGGGCCBCHHHHHHHHHHHTTCCG--------------GGHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCC---C
T ss_pred HHHHhccCCCCChHHHHHHHHHHhCCCh--------------hhhhhHHHHhccccHHHHHHHHHhc-CCccCccc---c
Confidence 87642 6899999999999999998544 5567899999999999999999986 68999984 6
Q ss_pred ecCCCC
Q psy16953 799 YVLPEQ 804 (806)
Q Consensus 799 Y~gp~~ 804 (806)
|+||+.
T Consensus 349 Y~G~~~ 354 (367)
T 2p2w_A 349 YVGPMD 354 (367)
T ss_dssp CCSCCS
T ss_pred ccCCCC
Confidence 999863
No 13
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=1e-53 Score=478.80 Aligned_cols=222 Identities=22% Similarity=0.332 Sum_probs=198.1
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCC-----CChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQ-----LPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~-----~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
.|.+... ..+++||++||++|+++.+ |++..+++||++||||||||+|+|| |++|+++||++|+|+|++||++
T Consensus 188 ~g~~~~~-p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe~NaST-ftaRvvaSt~ad~ysaiaAgi~ 265 (436)
T 2h12_A 188 QGEAFIY-PRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNAST-STVRLAGSTGANPFACIAAGIA 265 (436)
T ss_dssp HTCCCCC-CCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHH
T ss_pred cCCCCCC-CCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCCCchHH-HHHHHHHhcCccHHHHHHHHHH
Confidence 3655432 3457999999999999876 8999999999999999999999999 9999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcC--CcccccCCCCCCCCCCChHHHHHHHHHHHhC---C--CC
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKG--KLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---P--TT 707 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~--~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~--~~ 707 (806)
+| ||+|||||++|++||+++. +++++++||++.++++ ++|||||||||+ +.|||+++|+++++++. + .+
T Consensus 266 aL~GPlHGGAne~v~~ml~ei~-~~~~v~~~i~~~l~~~~g~~imGFGHrVYk--~~DPRa~iLk~~a~~l~~~~g~~~~ 342 (436)
T 2h12_A 266 ALWGPAHGGANEAVLKMLARIG-KKENIPAFIAQVKDKNSGVKLMGFGHRVYK--NFDPRAKIMQQTCHEVLTELGIKDD 342 (436)
T ss_dssp HHHSTTTTTHHHHHHHHHHHHC-SGGGHHHHHHHHHCTTSCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hcCCCccCCHHHHHHHHHHHhc-CchHHHHHHHHHHhccCCCcccCCCccccC--CCCCcHHHHHHHHHHHHHHhCCCCC
Confidence 99 9999999999999999984 6789999999999955 999999999996 46999999999999872 3 68
Q ss_pred hHHHHHHHHHHHHhcC----CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHh
Q psy16953 708 PLLNYALEVEKITTSK----KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQK 783 (806)
Q Consensus 708 ~~~~~a~~ve~~~~~~----~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~ 783 (806)
|+++++.++|+++.+. .++++||||||+|++|++||+| .+++++||++||++||+|||+||+
T Consensus 343 ~~~~la~~lE~~al~~~~~~~k~l~pNVDfysg~i~~~lGiP--------------~~~ft~lFaisR~~GW~AH~~Eq~ 408 (436)
T 2h12_A 343 PLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIP--------------TSMFTVLFAVARTTGWVSQWKEMI 408 (436)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHTTCCBCTHHHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCCcChHHHHHHHHHHhCCC--------------hhhhhhhhhhhccccHHHHHHHHH
Confidence 9999999999987553 3689999999999999999844 455679999999999999999999
Q ss_pred hcC-CCcccCCCCcceecCCCC
Q psy16953 784 RLK-QGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 784 ~~~-~~i~Rp~~~~i~Y~gp~~ 804 (806)
..+ ++|+||+ ..|+||+.
T Consensus 409 ~~~~~kI~RPr---~~Y~G~~~ 427 (436)
T 2h12_A 409 EEPGQRISRPR---QLYIGAPQ 427 (436)
T ss_dssp HSTTCCCCCCE---EEECSCCC
T ss_pred hCCCCceeccc---ccccCCCC
Confidence 875 5899998 46999853
No 14
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=6.5e-54 Score=473.84 Aligned_cols=222 Identities=24% Similarity=0.301 Sum_probs=200.6
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||++++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 139 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aaRv~aSt~ad~~savaagi~aL~Gp 216 (377)
T 1o7x_A 139 EGNKPRI-PEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPAST-TAALVAASTLSDMYSSLTAALAALKGP 216 (377)
T ss_dssp TTCCCCC-CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHHH-HHHHHHHHTTCCHHHHHHHHHHHHTST
T ss_pred cCCCCCC-CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChHH-HHHHHHHhcCCcHHHHHHHHHHhcCCC
Confidence 4666543 34589999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHH-hcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CC-ChHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMR-KKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PT-TPLLNYAL 714 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~-~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~-~~~~~~a~ 714 (806)
+||||+++|++||+++. ++++++++|++.+ ++|++|||||||||+ +.|||+++|+++++++. +. +++++++.
T Consensus 217 lHGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~~i~GfGHrvyk--~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~ 293 (377)
T 1o7x_A 217 LHGGAAEEAFKQFIEIG-DPNRVQNWFNDKVVNQKNRLMGFGHRVYK--TYDPRAKIFKKLALTLIERNADARRYFEIAQ 293 (377)
T ss_dssp TTTTHHHHHHHHHHHHC-SGGGHHHHHHHHTTTTCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhC-ChhHHHHHHHHHHHhcCCcccCCCccccC--CCCCchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999984 6778999999999 999999999999996 47999999999999983 44 78999999
Q ss_pred HHHHHHhc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+ +.++++||||||+|++|++||+| .+++++||++||++||+||++||+..+++|+||
T Consensus 294 ~le~~~~~~~~~k~l~pNVD~~sg~v~~~lG~p--------------~~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP 359 (377)
T 1o7x_A 294 KLEELGIKQFSSKGIYPNTDFYSGIVFYALGFP--------------VYMFTALFALSRTLGWLAHIIEYVEEQHRLIRP 359 (377)
T ss_dssp HHHHHHHHHHTTTTCCBCTTTTHHHHHHHHTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHhCCC--------------hhhhhhHHHHhhhccHHHHHHHHHhccCCccCC
Confidence 99999876 24589999999999999999854 455678999999999999999999985699999
Q ss_pred CCCcceecCCCC
Q psy16953 793 PWDDISYVLPEQ 804 (806)
Q Consensus 793 ~~~~i~Y~gp~~ 804 (806)
+ ..|+||+.
T Consensus 360 ~---~~Y~G~~~ 368 (377)
T 1o7x_A 360 R---ALYVGPEY 368 (377)
T ss_dssp E---EEECSCSC
T ss_pred c---ccccCCCC
Confidence 8 46999853
No 15
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-53 Score=474.60 Aligned_cols=220 Identities=21% Similarity=0.263 Sum_probs=199.7
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
.|.++... .+++||++||++||++++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++|||++| ||
T Consensus 184 ~g~~~~~p-~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST-~taRvvaSt~ad~ysavaagi~aL~Gp 261 (414)
T 3hwk_A 184 RGLPPIAP-HSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNAST-FAARVVTSTQSDIYSAVTGAIGALKGR 261 (414)
T ss_dssp TTCCCCCC-CTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTST
T ss_pred CCCCCCCC-CccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHH-HHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 46665433 3479999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHh---CCCChHHHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQN---FPTTPLLNYALEV 716 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~---~~~~~~~~~a~~v 716 (806)
+||||+++|++||+++. +++++++||++.++++++|||||||||+ +.|||+++|+++++++ .+.+++++++.++
T Consensus 262 lHGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~I~GFGHrVyk--~~DPRa~~L~~~a~~l~~~~g~~~~~~~a~~l 338 (414)
T 3hwk_A 262 LHGGANEAVMHDMIEIG-DPANAREWLRAKLARKEKIMGFGHRVYR--HGDSRVPTMKRALERVGTVRDGQRWLDIYQVL 338 (414)
T ss_dssp TTTHHHHHHHHHHHHHC-SGGGHHHHHHHHHHTTCCCTTBCCSSCS--SCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhC-CchHHHHHHHHHHhcCCCccCCCCCCCC--CCCccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999985 5678999999999999999999999996 4799999999999975 4578999999999
Q ss_pred HHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCc
Q psy16953 717 EKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDD 796 (806)
Q Consensus 717 e~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~ 796 (806)
|+++.+. ++++||||||+|++|.+||+| .+++++||++||++||+||++||+.. ++|+||+
T Consensus 339 e~~~~~~-k~l~pNVDf~sg~i~~~lGip--------------~~~~t~lFaisR~~Gw~AH~~Eq~~~-~riiRPr--- 399 (414)
T 3hwk_A 339 AAEMASA-TGILPNLDFPTGPAYYLMGFD--------------IASFTPIFVMSRITGWTAHIMEQATA-NALIRPL--- 399 (414)
T ss_dssp HHHHHHH-HCCCBCTHHHHHHHHHHHTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCE---
T ss_pred HHHHHHh-cCCCCchHHHHHHHHHHhCCC--------------HHHHHHHHHHHhHHHHHHHHHHHHhc-CCCcCCC---
Confidence 9998765 589999999999999999843 45668999999999999999999975 7999998
Q ss_pred ceecCCCC
Q psy16953 797 ISYVLPEQ 804 (806)
Q Consensus 797 i~Y~gp~~ 804 (806)
..|+||+.
T Consensus 400 ~~Y~G~~~ 407 (414)
T 3hwk_A 400 SAYCGHEQ 407 (414)
T ss_dssp EEECSCCC
T ss_pred ceeeCCCC
Confidence 46999975
No 16
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.3e-54 Score=472.41 Aligned_cols=221 Identities=23% Similarity=0.288 Sum_probs=199.2
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||+|++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 136 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST-~aaRv~aSt~ad~~savaagi~aL~Gp 213 (373)
T 1vgp_A 136 KGLDIIE-PDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNAST-FASLVVASTFSDLYSSIVAGISALKGP 213 (373)
T ss_dssp TTCCCCC-CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTCT
T ss_pred cCCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHH-HHHHHHHhcCccHHHHHHHHHHhcCCC
Confidence 3665533 34579999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCC--hHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTT--PLLNYAL 714 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~--~~~~~a~ 714 (806)
+||||+++|++||+++. ++++++++|++.++++++|||||||||+ +.|||+++|+++++++. +.+ ++++++.
T Consensus 214 lHGGAne~v~~ml~~i~-~~~~~~~~i~~~l~~~~~i~GfGHrvyk--~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~ 290 (373)
T 1vgp_A 214 LHGGANYEALKMFKEIG-SPEKVNDYILNRLSNKQRIMGFGHRVYK--TYDPRARILKQYAKLLAEKEGGEIYTLYQIAE 290 (373)
T ss_dssp TSSSCCCHHHHHHHHSC-SSSSHHHHHHHHHHTTCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhc-CchhHHHHHHHHHHcCCcccCCCccccC--CCCCchHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 99999999999999985 6789999999999999999999999996 47999999999999883 445 8999999
Q ss_pred HHHHHHhcC--CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTSK--KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~~--~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+. .++++||||||+|++|++||+ |.+++++||++||++||+||++||++. ++++||
T Consensus 291 ~le~~~~~~~~~k~l~pNVDf~sg~i~~~lGi--------------p~~~~t~lFaisR~~Gw~AH~~Eq~~~-~~i~RP 355 (373)
T 1vgp_A 291 KVEEIGIKYLGPKGIYPNVDFFSSIVFYSLGF--------------EPDFFPAVFASARVVGWVAHIMEYIKD-NKIIRP 355 (373)
T ss_dssp HHHHHHHHHHGGGTCCBCHHHHHHHHHHHTTC--------------CGGGHHHHHHHHHHHHHHHHHHHHGGG-CCCCCC
T ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHcCC--------------CHHhhhhhHHhhccccHHHHHHHHHhc-CCCcCc
Confidence 999998663 268999999999999999984 445668999999999999999999986 589999
Q ss_pred CCCcceecCCCC
Q psy16953 793 PWDDISYVLPEQ 804 (806)
Q Consensus 793 ~~~~i~Y~gp~~ 804 (806)
+ ..|+||+.
T Consensus 356 ~---~~Y~G~~~ 364 (373)
T 1vgp_A 356 K---AYYKGEIG 364 (373)
T ss_dssp C---CCCCSCCC
T ss_pred c---ccccCCCC
Confidence 8 46999864
No 17
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=1.2e-53 Score=470.75 Aligned_cols=219 Identities=21% Similarity=0.303 Sum_probs=199.0
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDR 640 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~ 640 (806)
|.+... ..+++||++||++||+|++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||+
T Consensus 140 g~~~i~-p~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St-~aarv~aSt~~d~~savaagi~aL~Gpl 217 (371)
T 1aj8_A 140 GLEYVP-PKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINAST-LAVMTVGSTLSDYYSAILAGIGALKGPI 217 (371)
T ss_dssp TCCCCC-CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHHSTT
T ss_pred CCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhH-HHHHHHhhcCCcHHHHHHHHHHHcCCCc
Confidence 555432 34579999999999999999999999999999999999999999 999999999999999999999999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy16953 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKIT 720 (806)
Q Consensus 641 hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~ 720 (806)
||||+++|++||+++. ++++++++|++.++++++|||||||||+ +.|||+++|+++++++ +.+++++++.++|+++
T Consensus 218 HGGAne~v~~~l~~i~-~~~~~~~~v~~~l~~~~~i~GfGHrvyk--~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~ 293 (371)
T 1aj8_A 218 HGGAVEEAIKQFMEIG-SPEKVEEWFFKALQQKRKIMGAGHRVYK--TYDPRARIFKKYASKL-GDKKLFEIAERLERLV 293 (371)
T ss_dssp TTTHHHHHHHHHHHHC-SGGGHHHHHHHHHHHTCCCTTBCCSSCS--SCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHhc-CchhHHHHHHHHHHcCCeeecCCccccC--CCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 9999999999999985 5678999999999999999999999996 4799999999999999 5689999999999998
Q ss_pred hcC--CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcce
Q psy16953 721 TSK--KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDIS 798 (806)
Q Consensus 721 ~~~--~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i~ 798 (806)
.+. .++++||||||+|++|++||+ |.+++++||++||++||+||++||++. ++++||+ ..
T Consensus 294 ~~~~~~k~l~pNVD~~sg~i~~~lGi--------------p~~~~t~lF~i~R~~Gw~AH~~Eq~~~-~~i~RP~---~~ 355 (371)
T 1aj8_A 294 EEYLSKKGISINVDYWSGLVFYGMKI--------------PIELYTTIFAMGRIAGWTAHLAEYVSH-NRIIRPR---LQ 355 (371)
T ss_dssp HHHTTTTTCCBCTTTTHHHHHHTTTC--------------CGGGHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCE---EE
T ss_pred HHhccCCCCCCChHHHHHHHHHHcCC--------------CHHhhhhHHHHhccccHHHHHHHHHhc-CCccCch---hh
Confidence 764 378999999999999999984 345567999999999999999999986 5899998 57
Q ss_pred ecCCCC
Q psy16953 799 YVLPEQ 804 (806)
Q Consensus 799 Y~gp~~ 804 (806)
|+||+.
T Consensus 356 Y~G~~~ 361 (371)
T 1aj8_A 356 YVGEIG 361 (371)
T ss_dssp ECSCCC
T ss_pred ccCCCC
Confidence 999863
No 18
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=1.6e-53 Score=470.74 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=198.8
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDR 640 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~ 640 (806)
|.+... ..+++||++||++||+|++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||+
T Consensus 141 g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aaRv~aSt~~d~~savaagi~aL~Gpl 218 (377)
T 1iom_A 141 GKEPIP-PREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNAST-FTAIAAFSTETDLYSAITAAVASLKGPR 218 (377)
T ss_dssp TCCCCC-CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHHSTT
T ss_pred CCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchH-HHHHHHhhcCCcHHHHHHHHHHHcccCc
Confidence 555432 34579999999999999999999999999999999999999999 999999999999999999999999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHH
Q psy16953 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVE 717 (806)
Q Consensus 641 hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve 717 (806)
||||+++|++||+++. ++++++++|++.++++++|||||||||+ +.|||+++|+++++++. +.+++++++.++|
T Consensus 219 HGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~i~GfGHrvyk--~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le 295 (377)
T 1iom_A 219 HGGANEAVMRMIQEIG-TPERAREWVREKLAKKERIMGMGHRVYK--AFDPRAGVLEKLARLVAEKHGHSKEYQILKIVE 295 (377)
T ss_dssp SSCHHHHHHHHHHHHC-SHHHHHHHHHHHHHTTCCCTTBSCSSCS--SCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhc-CchhHHHHHHHHHHCCCcccCCCCcccC--CCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999985 5668999999999999999999999996 46999999999999883 5689999999999
Q ss_pred HHHhc-C-CCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCC
Q psy16953 718 KITTS-K-KPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWD 795 (806)
Q Consensus 718 ~~~~~-~-~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~ 795 (806)
+++.+ . .++++||||||+|++|++||+| .+++++||++||++||+||++||+..+++++||+
T Consensus 296 ~~~~~~~~~k~l~pNVD~~sg~i~~~lG~p--------------~~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~-- 359 (377)
T 1iom_A 296 EEAGKVLNPRGIYPNVDFYSGVVYSDLGFS--------------LEFFTPIFAVARISGWVGHILEYQELDNRLLRPG-- 359 (377)
T ss_dssp HHHHHHHTTTTCCBCHHHHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--
T ss_pred HHHHHHhccCCCCCChHHHHHHHHHHcCCC--------------HHhhhhHHHHhccccHHHHHHHHHhhcCCccccc--
Confidence 99865 3 2689999999999999999844 4556789999999999999999998457999998
Q ss_pred cceecCCCC
Q psy16953 796 DISYVLPEQ 804 (806)
Q Consensus 796 ~i~Y~gp~~ 804 (806)
..|+||+.
T Consensus 360 -~~Y~G~~~ 367 (377)
T 1iom_A 360 -AKYVGELD 367 (377)
T ss_dssp -CCCCSCSS
T ss_pred -ccccCCCC
Confidence 46999864
No 19
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=5.6e-54 Score=475.86 Aligned_cols=219 Identities=21% Similarity=0.265 Sum_probs=197.1
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDR 640 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~ 640 (806)
|.++.. ..+++||++||++||++++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||+++| ||+
T Consensus 172 ~~~i~~-~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St-~taRvvaSt~ad~ysavaagi~aL~Gpl 249 (404)
T 3o8j_A 172 GERIQP-ETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNAST-FTSRVIAGTGSDVYSAIIGAIGALRGPK 249 (404)
T ss_dssp CCCCCC-CCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHH-HHHHHHHTTTCCHHHHHHHHHHHHTSTT
T ss_pred CCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHH-HHHHHHHhcCCCHHHHHHHHHHHccCCC
Confidence 445532 22479999999999999999999999999999999999999999 999999999999999999999999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCChHHHHHHHHH
Q psy16953 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTPLLNYALEVE 717 (806)
Q Consensus 641 hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ve 717 (806)
||||+++|++||+++. +++++++||++.+++|++|||||||||+ +.|||+++|+++++++. +.+++++++.++|
T Consensus 250 HGGAne~v~~ml~~i~-~~~~~~~~v~~~l~~~~~I~GFGHrVyk--~~DPRa~~l~~~a~~l~~~~g~~~~~~~a~~le 326 (404)
T 3o8j_A 250 HGGANEVSLEIQQRYE-TPDEAEADIRKRVENKEVVIGFGHPVYT--IADPRHQVIKRVAKQLSEEGGSLKMYHIADRLE 326 (404)
T ss_dssp TTCHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-CchhHHHHHHHHHhcCCcccCCCCCCCC--CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999999999999874 4568899999999999999999999996 47999999999999884 3589999999999
Q ss_pred HHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCCCcc
Q psy16953 718 KITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDI 797 (806)
Q Consensus 718 ~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~~~i 797 (806)
+++.+. ++++||||||+|++|.+||+| .+++++||++||++||+||++||+.. ++++||+ .
T Consensus 327 ~~~~~~-k~l~pNVDf~sg~i~~~lGip--------------~~~~t~lFaisR~~Gw~AH~~Eq~~~-~riiRPr---~ 387 (404)
T 3o8j_A 327 TVMWET-KKMFPNLDWFSAVSYNMMGVP--------------TEMFTPLFVIARVTGWAAHIIEQRQD-NKIIRPS---A 387 (404)
T ss_dssp HHHHHH-HCCCBCTTTHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCC---E
T ss_pred HHHHHh-cCCCcChHHHHHHHHHHcCCC--------------hHhHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCc---c
Confidence 998654 589999999999999999843 45668999999999999999999986 6999998 4
Q ss_pred eecCCCC
Q psy16953 798 SYVLPEQ 804 (806)
Q Consensus 798 ~Y~gp~~ 804 (806)
.|+||+.
T Consensus 388 ~Y~G~~~ 394 (404)
T 3o8j_A 388 NYTGPED 394 (404)
T ss_dssp EECSCCS
T ss_pred eecCCCC
Confidence 6999964
No 20
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=7.7e-54 Score=474.43 Aligned_cols=224 Identities=22% Similarity=0.273 Sum_probs=200.9
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||++++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 144 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aarv~aSt~~d~~savaagi~aL~Gp 221 (385)
T 2ifc_A 144 MNMPAEL-PKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPAST-TAGLVAVSTLSDMYSGITAALAALKGP 221 (385)
T ss_dssp TTCCCCC-CCCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTST
T ss_pred cCCCCCC-CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHH-HHHHHHHhcCCcHHHHHHHHHHHccCC
Confidence 4666543 34589999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHH-hcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC----CCChHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMR-KKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF----PTTPLLNYAL 714 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~-~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~----~~~~~~~~a~ 714 (806)
+||||+++|++||+++. ++++++++|++.+ +++++|||||||||+ +.|||+++|+++++++. +.+++++++.
T Consensus 222 lHGGAne~v~~ml~ei~-~~~~~~~~i~~~l~~~~~~i~GfGHrvyk--~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~ 298 (385)
T 2ifc_A 222 LHGGAAEAAIAQFDEIK-DPAMVEKWFNDNIINGKKRLMGFGHRVYK--TYDPRAKIFKGIAEKLSSKKPEVHKVYEIAT 298 (385)
T ss_dssp TTSSHHHHHHHHHHHHC-SGGGHHHHHHHHTTTSSSCCTTBCCSSCS--SCCHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHhcCCcccCCCCcccC--CCCCchHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 99999999999999985 5678999999999 999999999999996 46999999999999983 4688999999
Q ss_pred HHHHHHhc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+ ++++++||||||+|++|++||+|.+ ++++++||++||++||+||++||+..+++|+||
T Consensus 299 ~le~~~~~~~~~k~l~pNVD~~sg~v~~~lGip~~------------~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP 366 (385)
T 2ifc_A 299 KLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLR------------NNIYTALFALSRVTGWQAHFIEYVEEQQRLIRP 366 (385)
T ss_dssp HHHHHHHHHHGGGTCCBCTTTTHHHHHHHHTCCSG------------GGHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHcCCCcc------------hhhhhhHHHHhhcccHHHHHHHHHhccCCccCc
Confidence 99999866 2458999999999999999985440 055689999999999999999999985699999
Q ss_pred CCCcceecCCCC
Q psy16953 793 PWDDISYVLPEQ 804 (806)
Q Consensus 793 ~~~~i~Y~gp~~ 804 (806)
+ ..|+||+.
T Consensus 367 ~---~~Y~G~~~ 375 (385)
T 2ifc_A 367 R---AVYVGPAE 375 (385)
T ss_dssp E---EEECSCCC
T ss_pred c---cccCCCcC
Confidence 8 57999853
No 21
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=2.6e-53 Score=470.01 Aligned_cols=221 Identities=21% Similarity=0.250 Sum_probs=198.5
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||++++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 142 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aarv~aSt~~d~~savaagi~aL~Gp 219 (378)
T 1a59_A 142 RGEELIE-PREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNAST-FTARVITSTLADLHSAVTGAIGALKGP 219 (378)
T ss_dssp TTCCCCC-CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHHHHHHHHHHHHST
T ss_pred cCCCCCC-CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchH-HHHHHHhhcCCcHHHHHHHHHHHccCC
Confidence 3665543 34579999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCC--------CCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CCCh
Q psy16953 640 RFGGALNDAAIQFSAAYDAG--------LIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PTTP 708 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~--------~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~ 708 (806)
+||||+++|++||+++.+.+ ++++++|++.++++++|||||||||+ +.|||+++|+++++++. +.++
T Consensus 220 lHGGAne~v~~~l~~i~~~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk--~~DPRa~~l~~~a~~~~~~~~~~~ 297 (378)
T 1a59_A 220 LHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYK--NGDSRVPTMKSALDAMIKHYDRPE 297 (378)
T ss_dssp TTTTHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCS--SCCTTHHHHHHHHHHHHHHTTCTH
T ss_pred ccCCchHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhCCCeeeCCCCcccC--CCCCcHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999986431 56889999999999999999999996 46999999999999884 5689
Q ss_pred HHHHHHHHHHHHhcCCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCC
Q psy16953 709 LLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQG 788 (806)
Q Consensus 709 ~~~~a~~ve~~~~~~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~ 788 (806)
+++++.++|+++.+. ++++||||||+|++|++||+| .+++++||++||++||+||++||++. ++
T Consensus 298 ~~~~a~~le~~~~~~-k~l~pNVD~~sg~i~~~lGip--------------~~~~t~lF~isR~~Gw~AH~~Eq~~~-~~ 361 (378)
T 1a59_A 298 MLGLYNGLEAAMEEA-KQIKPNLDYPAGPTYNLMGFD--------------TEMFTPLFIAARITGWTAHIMEQVAD-NA 361 (378)
T ss_dssp HHHHHHHHHHHHHHH-HCCCBCTHHHHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHHHHHHHH-hCCCCChHHHHHHHHHHhCCC--------------hhhcchhhhhhcchhHHHHHHHHHhc-CC
Confidence 999999999998665 589999999999999999843 45567999999999999999999987 58
Q ss_pred cccCCCCcceecCCCC
Q psy16953 789 LYRHPWDDISYVLPEQ 804 (806)
Q Consensus 789 i~Rp~~~~i~Y~gp~~ 804 (806)
++||+ ..|+||+.
T Consensus 362 i~RP~---~~Y~G~~~ 374 (378)
T 1a59_A 362 LIRPL---SEYNGPEQ 374 (378)
T ss_dssp CCCCC---CCCCSCCC
T ss_pred CcCch---hhccCCCC
Confidence 99998 46999954
No 22
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-53 Score=469.72 Aligned_cols=222 Identities=23% Similarity=0.282 Sum_probs=200.1
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-cc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GD 639 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~ 639 (806)
+|.+... ..+++||++||++||+|++|++.++++||++||+|||||+|+|| |++|+++||++|+|+|++||++++ ||
T Consensus 140 ~g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St-~aaRv~aSt~~d~~savaagi~aL~Gp 217 (378)
T 1vgm_A 140 EGLKPKI-PEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPAST-TAALVASSTLSDMYSCIVAALAALKGP 217 (378)
T ss_dssp TTCCCCC-CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTST
T ss_pred CCCCCCC-CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHH-HHHHHHHhcCCcHHHHHHHHHHhccCC
Confidence 4666543 34589999999999999999999999999999999999999999 999999999999999999999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCCHHHHHHHHH-hcCCcccccCCCCCCCCCCChHHHHHHHHHHHhC---C-CChHHHHHH
Q psy16953 640 RFGGALNDAAIQFSAAYDAGLIPMEFVNEMR-KKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---P-TTPLLNYAL 714 (806)
Q Consensus 640 ~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~-~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~-~~~~~~~a~ 714 (806)
+||||+++|++||+++. ++++++++|++.+ +++++|||||||||+ +.|||+++|+++++++. + .+++++++.
T Consensus 218 lHGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~~i~GfGHrvyk--~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~ 294 (378)
T 1vgm_A 218 LHGGAAEEAFKQFVEIG-SVENADKWFEEKIIKGKSRLMGFGHRVYK--TYDPRAKIFKTLAKSFAEKNENVKKYYEIAE 294 (378)
T ss_dssp TTSCHHHHHHHHHHHHC-SGGGHHHHHHHHTTTSCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhC-CHhHHHHHHHHHHHhcCCcccCCCCcccC--CCCCchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999984 6778999999999 999999999999996 46999999999999983 3 568999999
Q ss_pred HHHHHHhc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccC
Q psy16953 715 EVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRH 792 (806)
Q Consensus 715 ~ve~~~~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp 792 (806)
++|+++.+ +.++++||||||+|++|++||+| .+++++||++||++||+||++||+..+++|+||
T Consensus 295 ~le~~~~~~~~~k~l~pNVDf~sg~i~~~lGip--------------~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP 360 (378)
T 1vgm_A 295 RIEKLGVDTFGSKHIYPNTDFYSGIVFYALGFP--------------IYMFTSLFALSRVLGWLAHIIEYVEEQHRLIRP 360 (378)
T ss_dssp HHHHHHHHHHGGGTCCBCTTTTHHHHHHHTTCC--------------GGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHhCCC--------------HHhhhHHHHHHhhccHHHHHHHHHhccCCccCc
Confidence 99999866 23589999999999999999854 455678999999999999999999985699999
Q ss_pred CCCcceecCCCC
Q psy16953 793 PWDDISYVLPEQ 804 (806)
Q Consensus 793 ~~~~i~Y~gp~~ 804 (806)
+ ..|+||+.
T Consensus 361 ~---~~Y~G~~~ 369 (378)
T 1vgm_A 361 R---ALYIGPEK 369 (378)
T ss_dssp E---EEECSCCC
T ss_pred c---cccCCCCC
Confidence 8 47999853
No 23
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=6.1e-54 Score=478.42 Aligned_cols=222 Identities=22% Similarity=0.337 Sum_probs=199.0
Q ss_pred CCCCccccccCCCCHHHHHHHHHhcC-----CCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhc
Q psy16953 561 AGMPISDVLKQNMGIGGVLSLLWFQR-----QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLL 635 (806)
Q Consensus 561 ~G~~i~~~i~~~~s~~~~~~~ll~g~-----~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~ 635 (806)
.|.++... .+++||++||++|+++. +|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||++
T Consensus 180 ~G~~~~~p-~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST-~taRvvaSt~ad~ysaiaAgi~ 257 (426)
T 3l96_A 180 IGQPFVYP-RNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNAST-STVRTAGSSGANPFACIAAGIA 257 (426)
T ss_dssp HTCCCCCC-CTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCSSCHHH-HHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCC-CCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCCCCchH-HHHHHHhccCCcHHHHHHHHHH
Confidence 37666432 45799999999999998 78999999999999999999999999 9999999999999999999999
Q ss_pred cc-ccccCChHHHHHHHHHHHhcCCCCHHHHHHHHHhcCC--cccccCCCCCCCCCCChHHHHHHHHHHHhC----CCCh
Q psy16953 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGK--LIMGIGHRVKSINNPDMRVKIIKEFVLQNF----PTTP 708 (806)
Q Consensus 636 al-G~~hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~~~--~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~----~~~~ 708 (806)
+| ||+||||+++|++||+++. +++++++||++.+++++ +|||||||||+ +.|||+++|++++++++ ..++
T Consensus 258 aL~GplHGGAne~v~~ml~~i~-~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk--~~DPRa~~l~~~a~~l~~~~g~~~~ 334 (426)
T 3l96_A 258 SLWGPAHGGANEAALKMLEEIG-KKENIPEFVRRAKDKNDSFRLMGFGHRVYK--NYDPRATVMRETCHEVLKELGTKDD 334 (426)
T ss_dssp HHHTTTTSSHHHHHHHHHHHCC-SSSSTTTTSGGGCCSSCCTGGGTBCCSSCS--SCCTTHHHHHHHHHHHHHHTCSCCS
T ss_pred hccCCccCCHHHHHHHHHHHhc-CchhHHHHHHHHHhCCCCcCcCCCCCCCCC--CCCccHHHHHHHHHHHHHHhCCCCH
Confidence 99 9999999999999999985 56789999999999999 99999999996 47999999999998763 3789
Q ss_pred HHHHHHHHHHHHhc----CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhh
Q psy16953 709 LLNYALEVEKITTS----KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKR 784 (806)
Q Consensus 709 ~~~~a~~ve~~~~~----~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~ 784 (806)
+++++.++|+++.+ +.++++||||||+|+++.+||+| .+++++||++||++||+|||+||+.
T Consensus 335 ~~~~a~~le~~~~~~~~~~~k~l~pNVDfysg~i~~~lGip--------------~~~ft~lFaisR~~Gw~AH~~Eq~~ 400 (426)
T 3l96_A 335 LLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIP--------------SSMFTVIFAMARTVGWIAHWSEMHS 400 (426)
T ss_dssp STTHHHHHHHHHHHCHHHHHHTCCBCHHHHHHHHHHHTTCC--------------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccCCCCchHHHHHHHHHHcCCC--------------cccchhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999865 24589999999999999999844 4566799999999999999999998
Q ss_pred cCCCcccCCCCcceecCCCC
Q psy16953 785 LKQGLYRHPWDDISYVLPEQ 804 (806)
Q Consensus 785 ~~~~i~Rp~~~~i~Y~gp~~ 804 (806)
.+++|+||+ ..|+||+.
T Consensus 401 ~~~~I~RPr---~~Y~G~~~ 417 (426)
T 3l96_A 401 DGMKIARPR---QLYTGYEK 417 (426)
T ss_dssp HHCCCCCCE---EEECSCCC
T ss_pred cCCCccCCc---ceecCCCC
Confidence 778999998 46999964
No 24
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=2.2e-52 Score=465.14 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=197.0
Q ss_pred CCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeeccCCChHHHHHHhhccc-ccc
Q psy16953 562 GMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDR 640 (806)
Q Consensus 562 G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aSa~adl~~avaagl~al-G~~ 640 (806)
|.+... .++++||++||++||+|++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+
T Consensus 171 g~~~i~-p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST-~aaRv~aSt~ad~~savaagi~aL~Gpl 248 (409)
T 2ibp_A 171 GLEVVR-PRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPAST-FAAHVVASTLSDLYSSVAAAIAALKGPL 248 (409)
T ss_dssp TCCCCC-CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHH-HHHHHHHTTTCCHHHHHHHHHHHHTSTT
T ss_pred CCCccc-CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhH-HHHHHHhhcCCcHHHHHHHHHHHccCCc
Confidence 554432 34579999999999999999999999999999999999999999 999999999999999999999999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHhc-CCcccccCCCCCCCCCCChHHHHHHHHHHHhC---CC-ChHHHHHHH
Q psy16953 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKK-GKLIMGIGHRVKSINNPDMRVKIIKEFVLQNF---PT-TPLLNYALE 715 (806)
Q Consensus 641 hGGA~~~a~~~l~e~~~~~~~~~~~v~~~~~~-~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~---~~-~~~~~~a~~ 715 (806)
||||+++|++||+++. ++++++++|++.+++ +++|||||||||+ +.|||+++|+++++++. +. +++++++.+
T Consensus 249 HGGAne~v~~ml~ei~-~~~~~~~~v~~~l~~~~~~i~GfGHrvyk--~~DPRa~~L~~~a~~l~~~~~~~g~~~~~a~~ 325 (409)
T 2ibp_A 249 HGGANEMAVRNYLEIG-TPAKAKEIVEAATKPGGPKLMGVGHRVYK--AYDPRAKIFKEFSRDYVAKFGDPQNLFAIASA 325 (409)
T ss_dssp TSCHHHHHHHHHHHHC-CGGGHHHHHHHHTSTTCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHHHHCCTTCHHHHHHH
T ss_pred cCCchHHHHHHHHHhC-CHHHHHHHHHHHHHhcCCcCcCCCccccC--CCCCchHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9999999999999985 567899999999999 9999999999996 47999999999999883 34 499999999
Q ss_pred HHHHH--hc--CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCccc
Q psy16953 716 VEKIT--TS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791 (806)
Q Consensus 716 ve~~~--~~--~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~R 791 (806)
+|+++ .+ +.++++||||||+|++|++||+| .+++++||++||++||+||++||+.. ++++|
T Consensus 326 le~~~l~~~~~~~k~l~pNVDf~sg~i~~~lGip--------------~~~~t~lFaisR~~Gw~AH~~Eq~~~-~~i~R 390 (409)
T 2ibp_A 326 IEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIP--------------YEYFTPIFAMSRVVGWVAHVLEYWEN-NRIFR 390 (409)
T ss_dssp HHHHHHHCHHHHHTTCCBCGGGTHHHHHHHHTCC--------------GGGHHHHHHHHHHHHHHHHHHHHGGG-CCCCC
T ss_pred HHHHHccchhhhhcCCCCChHHHHHHHHHHhCCC--------------HHhhhhHHHHhccccHHHHHHHHHhc-CCccC
Confidence 99998 33 13689999999999999999844 45567899999999999999999987 58999
Q ss_pred CCCCcceecCCCC
Q psy16953 792 HPWDDISYVLPEQ 804 (806)
Q Consensus 792 p~~~~i~Y~gp~~ 804 (806)
|+ ..|+||+.
T Consensus 391 P~---~~Y~G~~~ 400 (409)
T 2ibp_A 391 PR---ACYIGPHD 400 (409)
T ss_dssp CE---EEECSCCC
T ss_pred ch---hhccCCCC
Confidence 98 57999853
No 25
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=2.2e-51 Score=460.42 Aligned_cols=213 Identities=21% Similarity=0.276 Sum_probs=191.1
Q ss_pred ccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCC-CCCCcccceeeeeeccCCChHHHHHHhhccc-ccccCChHH
Q psy16953 569 LKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADH-GPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGALN 646 (806)
Q Consensus 569 i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADH-g~~~St~~aarv~aSa~adl~~avaagl~al-G~~hGGA~~ 646 (806)
.++++||++||++||++ |++..+++||++||||||| |+|+|| |++|+++||++|+|+|++||++++ ||+||||++
T Consensus 201 p~~~ls~a~nfl~ml~~--p~~~~~~~ld~~LiLhADHeg~N~ST-ftaRvvaSt~ad~ysavaagi~aL~GplHGGAne 277 (435)
T 1csh_A 201 IDSKLDWSHNFTNMLGY--TDPQFTELMRLYLTIHSDHEGGNVSA-HTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQ 277 (435)
T ss_dssp CCTTSCHHHHHHHHHTC--CCHHHHHHHHHHHHHTSCCCSCSHHH-HHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHH
T ss_pred CCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHccCCCCCchHH-HHHHHHHhcCCCHHHHHHHHHHhccCCcccChHH
Confidence 34689999999999988 7889999999999999999 799999 999999999999999999999999 999999999
Q ss_pred HHHHHHHHHhc------CCCCHHHHHHHHHhcCCcccccCCCCCCCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy16953 647 DAAIQFSAAYD------AGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKIT 720 (806)
Q Consensus 647 ~a~~~l~e~~~------~~~~~~~~v~~~~~~~~~ipGfGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ve~~~ 720 (806)
+|++||+++.+ +++++++||++.+++|++|||||||||+ +.|||+++|+++++++.+.+|+++++.++|+++
T Consensus 278 ~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVyk--~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a 355 (435)
T 1csh_A 278 EVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLR--KTDPRYTCQREFALKHLPSDPMFKLVAQLYKIV 355 (435)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCC--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCccccC--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999987642 2457899999999999999999999996 479999999999999987899999999999886
Q ss_pred hc------CCCCccCcHhHHHHHHHHHhhhhcCCCChHHHHhhhhccccceehhhhhhhhhHHhHHHHhhcCCCcccCCC
Q psy16953 721 TS------KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794 (806)
Q Consensus 721 ~~------~~~~l~pNvD~~~a~~~~~Lg~~~glft~ee~~~~i~~~~~~~lF~l~R~~G~iAH~~Eq~~~~~~i~Rp~~ 794 (806)
.+ +.++++||||||+|++|++||+ + |.+++++||++||++||+||++||+..+.+|+||+.
T Consensus 356 ~~~l~~~~~~k~l~pNVDf~sg~i~~~lGi-----p--------p~~~ft~lFaisR~~Gw~AH~~Eq~~~~~~I~RP~~ 422 (435)
T 1csh_A 356 PNVLLEQGKAKNPWPNVDAHSGVLLQYYGM-----T--------EMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKS 422 (435)
T ss_dssp HHHHHHHTCCSCCSBCTHHHHHHHHHHTTC-----C--------CGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHcCC-----C--------hhhcccchhhhhhhHHHHHHHHHHHhcCCCCcCcHH
Confidence 32 3468999999999999999983 2 345678999999999999999999998778999995
Q ss_pred CcceecCC
Q psy16953 795 DDISYVLP 802 (806)
Q Consensus 795 ~~i~Y~gp 802 (806)
.|+|+
T Consensus 423 ---~y~~~ 427 (435)
T 1csh_A 423 ---MSTAG 427 (435)
T ss_dssp ---CCHHH
T ss_pred ---HhhHH
Confidence 47763
No 26
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=100.00 E-value=3.3e-42 Score=390.74 Aligned_cols=207 Identities=16% Similarity=0.240 Sum_probs=187.9
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
++||+++.+ +|+.+|++|| ++|+..+++++++|.++|+| +||||+||++++|++|+++|+++|+||+|||| |++
T Consensus 24 ~~~~~~~~~-~p~~~DlavI---~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc-G~~ 97 (480)
T 3dmy_A 24 VRRWDSACQ-KLPDANLALI---SVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC-GTS 97 (480)
T ss_dssp ESSHHHHHH-HSTTCCEEEE---CSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHHTTCCEECSSC-CEE
T ss_pred cchHHHHHh-cCCCCCEEEE---ecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEecCc-ccc
Confidence 567888888 8999999999 67888999999999999999 99999999999999999999999999999999 888
Q ss_pred cCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCC----CCCCCHHHHHHHhh
Q psy16953 336 KPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDR----YPGTTFMDHILRYQ 411 (806)
Q Consensus 336 ~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~----~~d~~~~D~l~~l~ 411 (806)
|+. |++.+|.+. ++||+||+|||||++++++++|+.++|+|||++||+||+. ++|+++.|+|+||.
T Consensus 98 ~~~--------~~~~~f~~~--~~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~ 167 (480)
T 3dmy_A 98 MIA--------GTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLS 167 (480)
T ss_dssp EET--------TEEEESCCC--CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHH
T ss_pred ccC--------CccccccCC--CCCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHh
Confidence 864 455666653 5799999999999999999999999999999999999994 58999999999999
Q ss_pred cCCCccEEEEEEccCCcch---HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHc
Q psy16953 412 ADPEVKMIVLLGEVGGVEE---YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQA 488 (806)
Q Consensus 412 ~Dp~Tk~I~ly~Eigg~~d---~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qa 488 (806)
+||+||+|++|+| +..| ++|++++|+ ++||||++|+|||+. | |||+
T Consensus 168 ~Dp~T~~I~ly~E--~~~e~~~~~f~~~ar~--~~KPVV~~k~Grs~~--g-------------------------~r~~ 216 (480)
T 3dmy_A 168 ADEKSEVLAFVSK--PPAEAVRLKIVNAMKA--TGKPTVALFLGYTPA--V-------------------------ARDE 216 (480)
T ss_dssp TCTTCCEEEEEES--CCCHHHHHHHHHHHHH--HCSCEEEEETTCCCS--S-------------------------SEET
T ss_pred cCCCCCEEEEEEe--cCCcHHHHHHHHHHHh--CCCCEEEEEeCCCCc--c-------------------------cccC
Confidence 9999999999999 6666 679998885 789999999999997 3 7899
Q ss_pred CCcccCChhhHHHHHHHHHHh
Q psy16953 489 GAHVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 489 Gvi~v~~~~EL~~~~~all~~ 509 (806)
|+++++|++||++.++.+...
T Consensus 217 Gvirv~~~~el~~~a~~l~~~ 237 (480)
T 3dmy_A 217 NVWFASSLDEAARLACLLSRV 237 (480)
T ss_dssp TEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 999999999999999887653
No 27
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=4.2e-39 Score=360.79 Aligned_cols=182 Identities=59% Similarity=1.015 Sum_probs=172.4
Q ss_pred CcccccchhchHHHHHhhCC-CCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHH
Q psy16953 1 MSAKAISEATGKDIINRNLD-PNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKG 79 (806)
Q Consensus 1 ms~k~i~Ey~~K~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e 79 (806)
||+|+|+|||||+||++|+. ++|...++++++++..+|++||+++++||++.++|||||+|+|+|||+|||+++.|++|
T Consensus 1 m~~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~ee 80 (425)
T 3mwd_A 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDG 80 (425)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHH
T ss_pred CCchhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHH
Confidence 99999999999999999999 67866688888899999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHcCCee-------------------------------------------------------------------
Q psy16953 80 AQSWISERMGKDQ------------------------------------------------------------------- 92 (806)
Q Consensus 80 ~~~~~~~~~g~~i------------------------------------------------------------------- 92 (806)
+++|+++++++.+
T Consensus 81 v~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~l 160 (425)
T 3mwd_A 81 VKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKL 160 (425)
T ss_dssp HHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCCC
T ss_pred HHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCcccc
Confidence 9999999998764
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 161 ~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~ 240 (425)
T 3mwd_A 161 NPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240 (425)
T ss_dssp CHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCC
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16953 93 -------------------------------------------------------------------------------- 92 (806)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (806)
T Consensus 241 ~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~a~~e~v~~~~ 320 (425)
T 3mwd_A 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYA 320 (425)
T ss_dssp CSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCHHHHHHHH
T ss_pred cccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCCCCHHHHHHHH
Confidence
Q ss_pred ---------------EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCc
Q psy16953 93 ---------------VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGI 157 (806)
Q Consensus 93 ---------------~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~ 157 (806)
..+||||||+|||+||+||+||++|++++.+++.+.++|||||+.|||++||+++|+++|+++|+
T Consensus 321 ~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgi 400 (425)
T 3mwd_A 321 KTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGI 400 (425)
T ss_dssp HHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCC
Confidence 68999999999999999999999999997766667899999999999999999999999999999
Q ss_pred cEEEeCCcchHHHHHHHHhcCCCCC
Q psy16953 158 PLFVFGPETHMTAIVGMALGKKEIP 182 (806)
Q Consensus 158 ~i~~~~~~~~m~~~~~~a~~~~~~~ 182 (806)
|+++|++|+||+++|.+|++++|+|
T Consensus 401 p~~~~gpe~~~~~i~~~a~~~~~~~ 425 (425)
T 3mwd_A 401 PIHVFGTETHMTAIVGMALGHRPIP 425 (425)
T ss_dssp CEEEECTTSCTTHHHHHHTTSSCCC
T ss_pred ceEEeCccchHHHHHHHHhcCCCCC
Confidence 9999999999999999999999987
No 28
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.89 E-value=4.6e-23 Score=230.00 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=73.2
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCcc-------CceeecCC
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKL-------GLIKVNTD 76 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~-------Glv~l~~~ 76 (806)
|+||||++|+||++|+. |++ ++.+ ++|++|+.+....|+..|+|||||++.|+|||. |+|+++.|
T Consensus 1 m~l~E~~aK~lL~~~GI--pvp-~~~~-----~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s 72 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDNGV--KVQ-RFFV-----ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKD 72 (395)
T ss_dssp CBCCHHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESC
T ss_pred CCCCHHHHHHHHHHCCc--CCC-CeEE-----ECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECC
Confidence 68999999999999999 888 6766 789999999999998448999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCe
Q psy16953 77 FKGAQSWISERMGKD 91 (806)
Q Consensus 77 ~~e~~~~~~~~~g~~ 91 (806)
++|+++|+++++++.
T Consensus 73 ~~e~~~a~~~~l~~~ 87 (395)
T 2fp4_B 73 PEVVGQLAKQMIGYN 87 (395)
T ss_dssp HHHHHHHHHTTTTSE
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999998764
No 29
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.89 E-value=7.5e-23 Score=227.94 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=72.2
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCC-eEEccCccccccCccCceeecCCHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSK-LVAKPDQLIKRRGKLGLIKVNTDFKGAQS 82 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~VvKpd~l~~~RGK~Glv~l~~~~~e~~~ 82 (806)
|+||||++|+||++|+. |++ +..+ .+|.+|+.+..+||+ .+ +|||||.++|+|||+|+|+++.|++|+++
T Consensus 1 m~l~E~~aK~lL~~~GI--pvp-~~~~-----~~s~eea~~aa~~lG-~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~ 71 (388)
T 2nu8_B 1 MNLHEYQAKQLFARYGL--PAP-VGYA-----CTTPREAEEAASKIG-AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRA 71 (388)
T ss_dssp CBCCHHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHHHHC-SSCEEEEECCSSSCTTTTTCEEEECSHHHHHH
T ss_pred CCCCHHHHHHHHHHCCc--CCC-CeeE-----ECCHHHHHHHHHHhC-CCeEEEEEecCCCCCCccCCEEEECCHHHHHH
Confidence 68999999999999999 887 7766 689999999999998 46 99999999999999999999999999999
Q ss_pred HHHHHcCC
Q psy16953 83 WISERMGK 90 (806)
Q Consensus 83 ~~~~~~g~ 90 (806)
++++++++
T Consensus 72 a~~~~~~~ 79 (388)
T 2nu8_B 72 FAENWLGK 79 (388)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhhh
Confidence 99999874
No 30
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=6.1e-20 Score=172.64 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCe
Q psy16953 201 EQTKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDA 272 (806)
Q Consensus 201 ~~t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dl 272 (806)
..++|+|+|+|.+ .+++|+++|| +||||||++ +++ |++||+|++| +|+ +|+
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~-----------~V~pVnP~~--------~~i~G~~~y~sl~d-lp~-vDl 61 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGH-----------EFIPVGRKK--------GEVLGKTIINERPV-IEG-VDT 61 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTC-----------CEEEESSSC--------SEETTEECBCSCCC-CTT-CCE
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCC-----------eEEEECCCC--------CcCCCeeccCChHH-CCC-CCE
Confidence 3468999999865 4899999998 799999995 666 6999999999 999 999
Q ss_pred eEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 273 DVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
+++ +.|++.+++++++|.++|+|. +++++||. ++++.++|+++|||++| ||+|++-
T Consensus 62 avi---~~p~~~v~~~v~e~~~~g~k~-v~~~~G~~---~~e~~~~a~~~Girvv~-nC~gv~l 117 (122)
T 3ff4_A 62 VTL---YINPQNQLSEYNYILSLKPKR-VIFNPGTE---NEELEEILSENGIEPVI-GCTLVML 117 (122)
T ss_dssp EEE---CSCHHHHGGGHHHHHHHCCSE-EEECTTCC---CHHHHHHHHHTTCEEEE-SCHHHHH
T ss_pred EEE---EeCHHHHHHHHHHHHhcCCCE-EEECCCCC---hHHHHHHHHHcCCeEEC-CcCeEEe
Confidence 998 778899999999999999996 77999995 46899999999999997 9999864
No 31
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=99.77 E-value=1.5e-17 Score=185.63 Aligned_cols=374 Identities=16% Similarity=0.144 Sum_probs=198.7
Q ss_pred cccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHH
Q psy16953 4 KAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSW 83 (806)
Q Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~ 83 (806)
|+||||++|+||++|++ |++ +..+ .+|++|+.+....|+ .++|||||.++++|||.|+|+++.|.+|++++
T Consensus 1 m~L~E~~aK~lL~~~GI--pvp-~~~~-----~~s~eea~~aa~~lG-~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a 71 (397)
T 3ufx_B 1 MNLHEYQAKEILARYGV--PVP-PGKV-----AYTPEEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGVKLADTPQEAYEK 71 (397)
T ss_dssp CBCCHHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHHHHT-SCEEEEECCSSSCTTTTTCEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCC--CCC-CeEE-----ECCHHHHHHHHHHcC-CCEEEEEccccCCCCccceEEEeCCHHHHHHH
Confidence 68999999999999999 888 7777 789999999988998 79999999999999999999999999999999
Q ss_pred HHHHcCCee------EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEE--EcCCCHHHHHHHHHHhcccC
Q psy16953 84 ISERMGKDQ------VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVR--RAGPNYQEGLRIIREVGKTL 155 (806)
Q Consensus 84 ~~~~~g~~i------~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR--~~G~n~~eG~~~l~~~g~~~ 155 (806)
+++++++.+ ++++- =-+..-.++.- |+ +++ ....-|+++= .+|.+.|+=-+...+.-
T Consensus 72 ~~~~~~~~~~g~~~~~vlVE-e~v~~g~El~v---gv---~~D-----~~~g~pvi~~s~~GGv~iE~~a~~~pd~i--- 136 (397)
T 3ufx_B 72 AQAILGMNIKGLTVKKVLVA-EAVDIAKEYYA---GL---ILD-----RAKKRVVLMLSKEGGVDIEEVAAERPEAI--- 136 (397)
T ss_dssp HHHHTTCEETTEECCCEEEE-ECCCEEEEEEE---EE---EEE-----TTTTEEEEEEESCCSSCHHHHHHHCGGGC---
T ss_pred HHHhhhhhccCCccceEEEE-EeecCCeeEEE---EE---Eec-----CCCCCcEEEEeCCCCccHhhhcccCccce---
Confidence 999998643 11110 00000000000 00 000 0112233332 35555443222211110
Q ss_pred CccEE-EeCC--cchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChhHHHhhhhcccccccCCCcc
Q psy16953 156 GIPLF-VFGP--ETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSV 232 (806)
Q Consensus 156 g~~i~-~~~~--~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~ 232 (806)
+. .+++ -.+..+|.+++-++ ..+.. .. .-+.++ .+..+-..+.+
T Consensus 137 ---~~~~i~~~~~l~~~~a~~~~~~l-G~~g~--~~-~l~~~l----------------~~l~~l~~~~~---------- 183 (397)
T 3ufx_B 137 ---HKFWIDPHKGFRPFEAREMVKRA-GLEGN--LN-KLAQVL----------------VALYRAYEGVD---------- 183 (397)
T ss_dssp ---EEEECBTTTBCCHHHHHHHHHHH-TCCSC--HH-HHHHHH----------------HHHHHHHHHTT----------
T ss_pred ---EEEecCCCCCCCHHHHHHHHHHc-CCchH--HH-HHHHHH----------------HHHHHHHHcCC----------
Confidence 00 0111 01123333333222 00000 00 000000 00111112222
Q ss_pred cceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCChh-hHHHHHHHhcCCCCCEEEEEcCCCCHHH
Q psy16953 233 AAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRS-AYDSTIETLGFPQIRSIAIIAEGIPENM 311 (806)
Q Consensus 233 ~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~~-~~~~~le~~~~~gvk~~viis~Gf~E~~ 311 (806)
..+.=+||= -+.++ .++ -..|.-+. +-..+. .-++ +.++... + |++
T Consensus 184 -~~~lEINPL--------------~~~~~-g~~--~alDaki~--~ddnA~~r~~~-~~~~~~~--------~----~~~ 230 (397)
T 3ufx_B 184 -ASIAEINPL--------------VVTTD-GGI--VAADAKIV--LDDNALFRHPD-LAELREV--------E----AEH 230 (397)
T ss_dssp -EEEEEEEEE--------------EEETT-SCE--EESSCEEE--ECGGGGGGCHH-HHTTHHH--------H----CSS
T ss_pred -ccEEEeece--------------EECCC-CCE--EEEEeEEE--ecCcchhcchh-hhhhcCc--------c----cCC
Confidence 122233331 01100 000 01233332 221111 1111 1111100 0 112
Q ss_pred HHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEE
Q psy16953 312 TRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGV 391 (806)
Q Consensus 312 ~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~v 391 (806)
.+|. .|+++|+..+.. .|+|++++-||+++...++.+...|...+.++
T Consensus 231 ~~e~--~a~~~~l~yv~l------------------------------~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~l 278 (397)
T 3ufx_B 231 PLEV--EASNYGFAYVKL------------------------------DGNIGIIGNGAGLVMYTLDLVNRVGGKPANFL 278 (397)
T ss_dssp HHHH--HHHHTTCEEEEC------------------------------SSSEEEEESSHHHHHHHHHHHHHTTCCBSEEE
T ss_pred HhHH--HHHHcCCCcccC------------------------------CCcEEEEecCccHHHHHHHHHHHcCCCcCCcE
Confidence 2222 455666544322 37899999999999999999999999999999
Q ss_pred eecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHh----cCCCCCEEEEEeCcCcCcCcccccccc
Q psy16953 392 AIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKD----KRITKPLVAWCIGTCASMFTSEVQFGH 466 (806)
Q Consensus 392 s~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~----~~~~KPVV~lk~Grs~~~~g~~aa~sH 466 (806)
.+|+.. ..-.+.+.++.+.+||++++|++.+= |++.+ ..+++.+.+ ...+||||+--.|....
T Consensus 279 D~gG~a-~~e~~~~al~~~l~d~~v~~ilv~i~-ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~---------- 346 (397)
T 3ufx_B 279 DIGGGA-KADVVYNALKVVLKDPDVKGVFINIF-GGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEE---------- 346 (397)
T ss_dssp ECCSCC-CHHHHHHHHHHHHTCTTCCEEEEEEE-EEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEECHH----------
T ss_pred ecCCCC-CHHHHHHHHHHHHcCCCCCEEEEECC-CCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHH----------
Confidence 999984 23458888899999999999998653 56665 555554443 33479999987775332
Q ss_pred cCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccccCCCCCCCCCcccc
Q psy16953 467 AGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQPELPPPTVPMDY 531 (806)
Q Consensus 467 tGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~~~~~~P~~~~PMd~ 531 (806)
.-.+.|++.|+...+++++-...+..+.+ -.-....|+..+||.-
T Consensus 347 -------------~~~~~l~~~gip~~~~~e~Aa~~~~~l~~-------~a~w~~~~~g~~~~~~ 391 (397)
T 3ufx_B 347 -------------EAKKLLEGKPVYMYPTSIEAAKVTVAMKG-------GAAWLEFAPGDLPMVH 391 (397)
T ss_dssp -------------HHHHHTTTSSEEECSSHHHHHHHHHHSCC-------SCC-------------
T ss_pred -------------HHHHHHHhCCCcccCCHHHHHHHHHHHHH-------HhHHhhCCCCCCceee
Confidence 13457788898888887765554433221 1122345888888863
No 32
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=99.74 E-value=2.4e-18 Score=165.12 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=94.7
Q ss_pred CCceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCe
Q psy16953 201 EQTKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDA 272 (806)
Q Consensus 201 ~~t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dl 272 (806)
..++|+|+|++.+ .+++|++.|| +||||||+. +++ |+++|+|++| +++.+|+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-----------~V~~vnp~~--------~~i~G~~~~~s~~e-l~~~vDl 72 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGF-----------EVLPVNPNY--------DEIEGLKCYRSVRE-LPKDVDV 72 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTC-----------EEEEECTTC--------SEETTEECBSSGGG-SCTTCCE
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCC-----------EEEEeCCCC--------CeECCeeecCCHHH-hCCCCCE
Confidence 4557999999643 4789999998 499999984 455 6999999999 8999999
Q ss_pred eEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 273 DVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
+++ +.|+..+++++++|.++|++.+++.++++ ++++.++|+++|+|++||||+|+++|.
T Consensus 73 vii---~vp~~~v~~v~~~~~~~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpnc~g~~~~~ 131 (138)
T 1y81_A 73 IVF---VVPPKVGLQVAKEAVEAGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGRCIMVETSN 131 (138)
T ss_dssp EEE---CSCHHHHHHHHHHHHHTTCCEEEECTTSC----CHHHHHHHHHHTCEEECSCCHHHHC--
T ss_pred EEE---EeCHHHHHHHHHHHHHcCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCCcceEEccC
Confidence 888 56788999999999889999999999886 568888999999999999999999997
No 33
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=99.74 E-value=7.2e-19 Score=169.21 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=96.4
Q ss_pred CCCCceEEEEccChh-------HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQTR-------AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r-------~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~ 270 (806)
|+..++|+|+|++.+ .+++|+++|| +||||||+.. .+++ |+|||+|++| +|+.+
T Consensus 10 l~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~-----------~v~~vnp~~~------~~~i~G~~~~~sl~e-l~~~v 71 (140)
T 1iuk_A 10 LSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY-----------RVLPVNPRFQ------GEELFGEEAVASLLD-LKEPV 71 (140)
T ss_dssp HHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC-----------EEEEECGGGT------TSEETTEECBSSGGG-CCSCC
T ss_pred HcCCCEEEEECCCCCCCChHHHHHHHHHHCCC-----------EEEEeCCCcc------cCcCCCEEecCCHHH-CCCCC
Confidence 434558999999743 4789999998 4999999821 1456 6999999999 89999
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
|++++ +.|+..+++++++|.++|+|.++ +.+|+. ++++.++|+++|+|++||||+|+++|.
T Consensus 72 Dlavi---~vp~~~~~~v~~~~~~~gi~~i~-~~~g~~---~~~~~~~a~~~Gir~vgpnc~g~~~~~ 132 (140)
T 1iuk_A 72 DILDV---FRPPSALMDHLPEVLALRPGLVW-LQSGIR---HPEFEKALKEAGIPVVADRCLMVEHKR 132 (140)
T ss_dssp SEEEE---CSCHHHHTTTHHHHHHHCCSCEE-ECTTCC---CHHHHHHHHHTTCCEEESCCHHHHHHH
T ss_pred CEEEE---EeCHHHHHHHHHHHHHcCCCEEE-EcCCcC---HHHHHHHHHHcCCEEEcCCccceEChh
Confidence 99888 66778999999999999999775 456665 578999999999999999999999987
No 34
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=99.71 E-value=8.5e-18 Score=162.37 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=96.6
Q ss_pred CCCCceEEEEccCh-------hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQT-------RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~-------r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~ 270 (806)
|+...+|+|+|++. +.+++|++.|| +||||||+. +++ |++||+|++| +|+.+
T Consensus 19 l~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~-----------~v~~Vnp~~--------~~i~G~~~y~sl~~-l~~~v 78 (144)
T 2d59_A 19 LTRYKKIALVGASPKPERDANIVMKYLLEHGY-----------DVYPVNPKY--------EEVLGRKCYPSVLD-IPDKI 78 (144)
T ss_dssp HHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-----------EEEEECTTC--------SEETTEECBSSGGG-CSSCC
T ss_pred HcCCCEEEEEccCCCCCchHHHHHHHHHHCCC-----------EEEEECCCC--------CeECCeeccCCHHH-cCCCC
Confidence 54456899999973 34789999998 499999984 455 6999999999 89999
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
|++++ ++|+..+++++++|.++|++.++ +.+|+. ++++.++|+++|+|++||||+|+++|.
T Consensus 79 Dlvvi---~vp~~~~~~vv~~~~~~gi~~i~-~~~g~~---~~~l~~~a~~~Gi~vvGpnc~gv~~~~ 139 (144)
T 2d59_A 79 EVVDL---FVKPKLTMEYVEQAIKKGAKVVW-FQYNTY---NREASKKADEAGLIIVANRCMMREHER 139 (144)
T ss_dssp SEEEE---CSCHHHHHHHHHHHHHHTCSEEE-ECTTCC---CHHHHHHHHHTTCEEEESCCHHHHHHH
T ss_pred CEEEE---EeCHHHHHHHHHHHHHcCCCEEE-ECCCch---HHHHHHHHHHcCCEEEcCCchhhcchh
Confidence 99888 66778999999999999999765 567764 678999999999999999999999885
No 35
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=99.71 E-value=5.6e-18 Score=163.88 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=97.1
Q ss_pred CCCCceEEEEccCh-------hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQT-------RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~-------r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~ 270 (806)
|+..++|+|+|++. ..+++|++.|| +||||||+.. | +++ |+++|+|++| +|+.+
T Consensus 10 l~~p~~IavIGas~~~g~~G~~~~~~L~~~G~-----------~v~~vnp~~~-----g-~~i~G~~~~~sl~e-l~~~~ 71 (145)
T 2duw_A 10 LTSTRTIALVGASDKPDRPSYRVMKYLLDQGY-----------HVIPVSPKVA-----G-KTLLGQQGYATLAD-VPEKV 71 (145)
T ss_dssp HHHCCCEEEESCCSCTTSHHHHHHHHHHHHTC-----------CEEEECSSST-----T-SEETTEECCSSTTT-CSSCC
T ss_pred HhCCCEEEEECcCCCCCChHHHHHHHHHHCCC-----------EEEEeCCccc-----c-cccCCeeccCCHHH-cCCCC
Confidence 44355799999964 24789999998 4999999841 2 445 6999999999 89999
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccccCC
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPG 338 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~ 338 (806)
|++++ ++|+..+++++++|.++|++.+++.++.+ ++++.++|+++|+|++||||+|+++|.
T Consensus 72 Dlvii---~vp~~~v~~v~~~~~~~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igpnc~g~~~~~ 132 (145)
T 2duw_A 72 DMVDV---FRNSEAAWGVAQEAIAIGAKTLWLQLGVI----NEQAAVLAREAGLSVVMDRCPAIELPR 132 (145)
T ss_dssp SEEEC---CSCSTHHHHHHHHHHHHTCCEEECCTTCC----CHHHHHHHHTTTCEEECSCCHHHHSTT
T ss_pred CEEEE---EeCHHHHHHHHHHHHHcCCCEEEEcCChH----HHHHHHHHHHcCCEEEcCCeeeEEccc
Confidence 99887 55678999999999889999988887666 678899999999999999999999997
No 36
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.71 E-value=1.5e-08 Score=113.22 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHHHHcCCe-e--EEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHH
Q psy16953 74 NTDFKGAQSWISERMGKD-Q--VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIRE 150 (806)
Q Consensus 74 ~~~~~e~~~~~~~~~g~~-i--~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~ 150 (806)
+.+.++.++.++..+..+ + -++||||||++||+||+ ||++|+++ .+.++|||||+.|+|+++|+++|++
T Consensus 283 ~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~---~i~~a~~~-----~~~~kPvvv~~~G~~~~~~~~~l~~ 354 (397)
T 3ufx_B 283 GAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAK---GVIRALEE-----GLLTKPVVMRVAGTAEEEAKKLLEG 354 (397)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHH---HHHHHHTT-----TCCCSCEEEEEEEECHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHH---HHHHHHHh-----hCCCCcEEEEccCCCHHHHHHHHHh
Confidence 467888888888888653 4 45568999999999995 89999998 4579999999999999999999999
Q ss_pred hcccCCccEEEeCCcchHHHHHHHHhcCCC
Q psy16953 151 VGKTLGIPLFVFGPETHMTAIVGMALGKKE 180 (806)
Q Consensus 151 ~g~~~g~~i~~~~~~~~m~~~~~~a~~~~~ 180 (806)
.| |++|.+ |++|++++++...
T Consensus 355 ~g------ip~~~~---~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 355 KP------VYMYPT---SIEAAKVTVAMKG 375 (397)
T ss_dssp SS------EEECSS---HHHHHHHHHHSCC
T ss_pred CC------CcccCC---HHHHHHHHHHHHH
Confidence 85 788999 9999999988665
No 37
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.37 E-value=1.4e-07 Score=97.86 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=71.0
Q ss_pred CcccccchhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCcc-ccccCccCceeec-CCHH
Q psy16953 1 MSAKAISEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQL-IKRRGKLGLIKVN-TDFK 78 (806)
Q Consensus 1 ms~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l-~~~RGK~Glv~l~-~~~~ 78 (806)
++++.++||++|++|.+|+. |++ +..+ .++.+|+......++ .++||||+.. +++||+.|+|+++ .|.+
T Consensus 15 ~~~~~l~k~~~k~ll~~~GI--p~p-~~~~-----~~~~~ea~~~a~~lg-~PvvvKp~~~~~~~r~~~gGv~~~v~~~~ 85 (238)
T 1wr2_A 15 QGRTAMVEYEAKQVLKAYGL--PVP-EEKL-----AKTLDEALEYAKEIG-YPVVLKLMSPQILHKSDAKVVMLNIKNEE 85 (238)
T ss_dssp TTCCEECHHHHHHHHHTTTC--CCC-CCEE-----ESSHHHHHHHHHHHC-SSEEEEEECTTCCCHHHHTCEEEEECSHH
T ss_pred cCcCCCCHHHHHHHHHHcCc--CCC-CeEE-----eCCHHHHHHHHHHhC-CCEEEEEccCCCCcCCccCCEEEeCCCHH
Confidence 45678999999999999999 887 6666 578889888777787 6999999999 9999999999995 9999
Q ss_pred HHHHHHHHHcCC
Q psy16953 79 GAQSWISERMGK 90 (806)
Q Consensus 79 e~~~~~~~~~g~ 90 (806)
|++++++++++.
T Consensus 86 el~~a~~~~~~~ 97 (238)
T 1wr2_A 86 ELKKKWEEIHEN 97 (238)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 38
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=97.66 E-value=0.0021 Score=72.89 Aligned_cols=247 Identities=12% Similarity=0.132 Sum_probs=145.5
Q ss_pred ceEEEEccChhHHHhhh----hcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 203 TKAIVWGMQTRAVQSML----DFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 203 t~v~V~G~~~r~~~~ll----~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
-+|.++..|+.....++ +.| .|--+-|+-+. ..++. +..+-+.+.+.++-.+|+++
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g----------~G~s~~vs~G~---------~~~~~-~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKED----------IGFSKFISVGN---------MADVD-FAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTT----------CEESEEEECTT---------CCSSC-HHHHHHHHTTCSSCCEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcC----------CCeeEEEECCC---------cCCCC-HHHHHHHHhcCCCCCEEEEE
Confidence 67999999987654443 333 23334444431 11222 22222335566676666555
Q ss_pred cCC---hhhHHHHHHHhcCCCCCEEEEEcCCCCHHH--------------HHHHHHHHHHcCCeEEccCccccccCCccc
Q psy16953 279 ASL---RSAYDSTIETLGFPQIRSIAIIAEGIPENM--------------TRKLNLLAKEKGVSIIGPATVGGLKPGCFK 341 (806)
Q Consensus 279 ~~~---~~~~~~~le~~~~~gvk~~viis~Gf~E~~--------------~~~l~~~a~~~giriiGPN~~Gii~p~~~~ 341 (806)
.-. ......+.+.+. .+-+ +|++-.|-.+.- .+...+.-|+.|+..+ .. +..
T Consensus 210 ~E~i~~~~~f~~~a~~~~-~~KP-Vv~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v--~~-----~~E-- 278 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKRVT-KKKP-IIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVA--NT-----IDE-- 278 (457)
T ss_dssp ESCCSCHHHHHHHHHHHH-HHSC-EEEEECC------------------CHHHHHHHHHHTTCEEE--SS-----HHH--
T ss_pred EecCCCHHHHHHHHHHhc-CCCC-EEEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEE--CC-----HHH--
Confidence 443 344555565553 3434 555555544310 1222334566775321 11 110
Q ss_pred cccCCCCcccccccCCCCCCCEEEEeCChhHHHHHHHHHHhcCCce---------------------eEEEeecCCCCCC
Q psy16953 342 IGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGV---------------------YEGVAIGGDRYPG 400 (806)
Q Consensus 342 ig~~~g~~~~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~---------------------s~~vs~Gn~~~~d 400 (806)
+...... +.. ..++-++|+++|-||+++....|.+.+.|+-+ ...+.+|++ ++
T Consensus 279 l~~~~~~---l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~--a~ 352 (457)
T 2csu_A 279 MLSMARA---FSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIAS--AR 352 (457)
T ss_dssp HHHHHTT---TTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTT--CC
T ss_pred HHHHHHH---hcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCC--CC
Confidence 0000001 111 23456789999999999999999999988873 456777766 33
Q ss_pred -CCHHHHHHHhhcCCCccEEEEEEc---cCCc--ch--HHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCC
Q psy16953 401 -TTFMDHILRYQADPEVKMIVLLGE---VGGV--EE--YEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCAN 472 (806)
Q Consensus 401 -~~~~D~l~~l~~Dp~Tk~I~ly~E---igg~--~d--~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag 472 (806)
-.+.+.++-+.+||++++|++.+- .||. .+ +.+.++++++..+|||++...|.+..
T Consensus 353 ~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~---------------- 416 (457)
T 2csu_A 353 GEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVS---------------- 416 (457)
T ss_dssp HHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTT----------------
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcch----------------
Confidence 236788999999999999999874 2223 23 56888888766779999854332221
Q ss_pred CCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHH
Q psy16953 473 SDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYK 508 (806)
Q Consensus 473 ~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~ 508 (806)
. ...+.|+++|+...+++++-...+..+.+
T Consensus 417 --~----~~~~~L~~~Gip~~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 417 --E----KAKELLEKNGIPTYERPEDVASAAYALVE 446 (457)
T ss_dssp --H----HHHHHHHTTTCCEESSHHHHHHHHHHHHH
T ss_pred --H----HHHHHHHhCCCCccCCHHHHHHHHHHHHH
Confidence 1 15567899999999999988877766543
No 39
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.52 E-value=0.017 Score=65.76 Aligned_cols=201 Identities=15% Similarity=0.170 Sum_probs=115.0
Q ss_pred HHHHHHh-cCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE----ccCccccccCCccccccCCCCcc---ccccc--
Q psy16953 286 DSTIETL-GFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII----GPATVGGLKPGCFKIGNTGGMMD---NILHS-- 355 (806)
Q Consensus 286 ~~~le~~-~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii----GPN~~Gii~p~~~~ig~~~g~~~---~~~~~-- 355 (806)
.++++.+ ....++.|+++.+++.|...+++.+.+|+.+-.|+ |-...|+=..+-.++-+..-+.+ .+...
T Consensus 160 ~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f~~~ar~~~KPVV~~k~Grs~~g~r~~Gvirv~~~~el~~~a~~l~~~~~ 239 (480)
T 3dmy_A 160 LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTA 239 (480)
T ss_dssp HHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHHHHHHCSCEEEEETTCCCSSSEETTEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHHHHhCCCCEEEEEeCCCCcccccCCEEEECCHHHHHHHHHHHhcCcc
Confidence 4455554 34678888888888777655677777665554443 32222211111000000000000 00000
Q ss_pred -----CCCCCCCEEEEeCChhHHHHHHHHHHhcCCcee----------------EEEee-------cCCCCCCC----CH
Q psy16953 356 -----KLYRPGSVAYVSRSGGMSNELNNIISKATNGVY----------------EGVAI-------GGDRYPGT----TF 403 (806)
Q Consensus 356 -----~~~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s----------------~~vs~-------Gn~~~~d~----~~ 403 (806)
..++-.+|++||-||+++....+.+.+ |+++. ..+.+ ||- .|+ .+
T Consensus 240 ~~~~qp~~~G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NP--vD~~d~~~~ 316 (480)
T 3dmy_A 240 RRNAIAPVSSGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRP--HPMIDPTLR 316 (480)
T ss_dssp HHHHHCCCSCCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSC--CTTTCCHHH
T ss_pred ccccCCCCCCCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCC--cCCCCHHHH
Confidence 123334699999999999999999888 66553 33443 444 343 36
Q ss_pred HHHHHHhhcCCCccEEEE--EEccCCcch--HHHHHHHHhcC--C--CCC--EEEEEeCcCcCcCcccccccccCCcCCC
Q psy16953 404 MDHILRYQADPEVKMIVL--LGEVGGVEE--YEVCAALKDKR--I--TKP--LVAWCIGTCASMFTSEVQFGHAGSCANS 473 (806)
Q Consensus 404 ~D~l~~l~~Dp~Tk~I~l--y~Eigg~~d--~~f~~a~r~~~--~--~KP--VV~lk~Grs~~~~g~~aa~sHtGalag~ 473 (806)
.+.++-+.+||++.+|++ .+-.+...+ ..+++++.++. . +|| +++|-.|....
T Consensus 317 ~~al~~~l~D~~vd~vlv~~v~~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~----------------- 379 (480)
T 3dmy_A 317 NQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERD----------------- 379 (480)
T ss_dssp HHHHHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTS-----------------
T ss_pred HHHHHHHhcCCCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccc-----------------
Confidence 788999999999998887 222233333 44555554431 2 799 45665555321
Q ss_pred CcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 474 DAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 474 ~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
. .....-.+.|+++||..-+++++-...+..+.
T Consensus 380 ~-~~~~~~~~~L~~aGIp~f~spe~Av~a~~~l~ 412 (480)
T 3dmy_A 380 P-QCRSQQIATLEDAGIAVVSSLPEATLLAAALI 412 (480)
T ss_dssp T-TCHHHHHHHHHHTTCEECSSHHHHHHHHHHHT
T ss_pred h-hhHHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 0 00011346899999999999998777665554
No 40
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.31 E-value=0.0009 Score=74.52 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----V 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----f 433 (806)
..|+|++++-+|+++...+|.+...|.-...++.+|+.. ..-.+...++.+.+||++|+|++.+ .||+.+ .. +
T Consensus 262 l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a-~~e~~~~al~~il~d~~v~~ilvni-~ggi~~~d~vA~gi 339 (395)
T 2fp4_B 262 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV-KESQVYQAFKLLTADPKVEAILVNI-FGGIVNCAIIANGI 339 (395)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSC-CHHHHHHHHHHHHHCTTCCEEEEEE-EESSSCHHHHHHHH
T ss_pred cCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCC-CHHHHHHHHHHHhCCCCCCEEEEEe-cCCccCcHHHHHHH
Confidence 368999999999999999999999998899999999983 2234567888899999999999865 478876 33 5
Q ss_pred HHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCccc--CChhhHHHHH
Q psy16953 434 CAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVP--SSFDTLGDII 503 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v--~~~~EL~~~~ 503 (806)
.+++++...+||||+.-.|.... .-.+.|+++|+-.. +|+++-...+
T Consensus 340 i~a~~~~~~~~Pivvrl~G~n~~-----------------------~g~~~L~~~gl~~~~~~~~~~Aa~~~ 388 (395)
T 2fp4_B 340 TKACRELELKVPLVVRLEGTNVH-----------------------EAQNILTNSGLPITSAVDLEDAAKKA 388 (395)
T ss_dssp HHHHHHHTCCSCEEEEEEETTHH-----------------------HHHHHHHHTCSCCEECSSHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCCHH-----------------------HHHHHHHHCCCceEeCCCHHHHHHHH
Confidence 55666656789999976665442 14568888886555 6666554433
No 41
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.30 E-value=0.0014 Score=72.76 Aligned_cols=120 Identities=16% Similarity=0.248 Sum_probs=92.1
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH----H
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE----V 433 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~----f 433 (806)
..|+|++++-+|+++...+|.+...|.-...++.+|+.. ..-.+.+.++.+..||++|+|++.+ .||+.+ .. +
T Consensus 255 l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a-~~~~~~~~~~~il~d~~v~~ilvni-~ggi~~~~~vA~gi 332 (388)
T 2nu8_B 255 LDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA-TKERVTEAFKIILSDDKVKAVLVNI-FGGIVRCDLIADGI 332 (388)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCC-CHHHHHHHHHHHHTSTTCCEEEEEE-ESCSSCHHHHHHHH
T ss_pred CCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEe-cCCcCCchHHHHHH
Confidence 479999999999999999999999998889999999983 2234566788888999999999987 789886 44 4
Q ss_pred HHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCccc--CChhhHHHHH
Q psy16953 434 CAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVP--SSFDTLGDII 503 (806)
Q Consensus 434 ~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v--~~~~EL~~~~ 503 (806)
.+++++...+||||+--.|+... .-.+.|+++|+-.. +|+++-...+
T Consensus 333 i~a~~~~~~~~pivvrl~G~n~~-----------------------~g~~~l~~~g~~~~~~~~~~~aa~~~ 381 (388)
T 2nu8_B 333 IGAVAEVGVNVPVVVRLEGNNAE-----------------------LGAKKLADSGLNIIAAKGLTDAAQQV 381 (388)
T ss_dssp HHHHHHHTCCSCEEEEEESTTHH-----------------------HHHHHHHTTCSSEEECSSHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEeCCCCHH-----------------------HHHHHHHHCCCceecCCCHHHHHHHH
Confidence 55666656789999966665442 14567888886555 6666654443
No 42
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=97.00 E-value=0.00097 Score=71.14 Aligned_cols=123 Identities=12% Similarity=0.083 Sum_probs=74.9
Q ss_pred CCceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCC-Ccc--cccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGD-HKL--KFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~-~~~--~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...||+|+|..++.-+.+++. +.....-.+.|-+-+-.+. .++ ....|-...++|+|.++++ +-..+|+.|-
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~--v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~-ll~~aDVvID-- 94 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITA--IQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPES-AFSNTEGILD-- 94 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHH--HHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHH-HTTSCSEEEE--
T ss_pred CCeEEEEECCCCHHHHHHHHH--HHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHH-HhcCCCEEEE--
Confidence 446999999887764433321 0000111223332221111 010 1112323457999999999 4556776554
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
|. ++.++.+.++.|.+.|++ +|+-|.||.++..++|.++|++.++ ++.||.
T Consensus 95 FT-~p~a~~~~~~~~l~~Gv~-vViGTTG~~~e~~~~L~~aa~~~~~-~~a~N~ 145 (288)
T 3ijp_A 95 FS-QPQASVLYANYAAQKSLI-HIIGTTGFSKTEEAQIADFAKYTTI-VKSGNM 145 (288)
T ss_dssp CS-CHHHHHHHHHHHHHHTCE-EEECCCCCCHHHHHHHHHHHTTSEE-EECSCC
T ss_pred cC-CHHHHHHHHHHHHHcCCC-EEEECCCCCHHHHHHHHHHhCcCCE-EEECCC
Confidence 55 555677788888889986 6667889999888899999987554 888884
No 43
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=96.53 E-value=0.002 Score=68.19 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=55.7
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
++++|.++++++ +.+|+.|- |. ++.+..+.++.|.+.|++ +|+-|.||.++..++|.++|++.+ .++.||.
T Consensus 60 gv~v~~dl~~ll-~~~DVVID--fT-~p~a~~~~~~~al~~G~~-vVigTTG~s~~~~~~L~~aa~~~~-vv~a~N~ 130 (272)
T 4f3y_A 60 GVALTDDIERVC-AEADYLID--FT-LPEGTLVHLDAALRHDVK-LVIGTTGFSEPQKAQLRAAGEKIA-LVFSANM 130 (272)
T ss_dssp SCBCBCCHHHHH-HHCSEEEE--CS-CHHHHHHHHHHHHHHTCE-EEECCCCCCHHHHHHHHHHTTTSE-EEECSCC
T ss_pred CceecCCHHHHh-cCCCEEEE--cC-CHHHHHHHHHHHHHcCCC-EEEECCCCCHHHHHHHHHHhccCC-EEEECCC
Confidence 689999999954 45776554 55 566777888888889987 666788999988889999998755 4888884
No 44
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=96.04 E-value=0.026 Score=63.44 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=65.8
Q ss_pred ccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-..+.|.|+...++ .+.||||+|.|+.+ +.+|.++.++||+|..|+..+.+.++..|.- |..-+.......
T Consensus 54 l~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~-~~~feEvayLLl~G~LPt~~el~~f~~~l~~---~~~lp~~v~~~~ 129 (436)
T 2h12_A 54 YGETAACNSKITFIDGDKGVLLHRGYPIAQLAE-NASYEEVIYLLLNGELPNKAQYDTFTNTLTN---HTLLHEQIRNFF 129 (436)
T ss_dssp CTTEEEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHT---TCSCCGGGHHHH
T ss_pred cCCCeeeeeeceEEeCCCCEEEECCeEHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHh---ccCCCHHHHHHH
Confidence 44556788888877654 68999999999886 5799999999999999999888888887743 332222211111
Q ss_pred eeeccCCChHHHHHHhhcccc
Q psy16953 618 VCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG 638 (806)
-.....+++-..+.+++++++
T Consensus 130 ~~~p~~~hPM~~l~~~v~aL~ 150 (436)
T 2h12_A 130 NGFRRDAHPMAILCGTVGALS 150 (436)
T ss_dssp TTSCTTCCHHHHHHHHHHHHG
T ss_pred HhCCCCCCHHHHHHHHHHHHh
Confidence 112233677777777776664
No 45
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=95.91 E-value=0.009 Score=63.13 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred ecccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC-cc
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA-TV 332 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN-~~ 332 (806)
.++++|.++++++ ..+|+.+ .|.+| ....+.++.|.+.|++ +|+-+.||.+++.++|.+.+++.+ .++.|| ++
T Consensus 58 ~~v~~~~dl~~~l-~~~DvVI--Dft~p-~~~~~~~~~a~~~G~~-vVigTtG~~~e~~~~L~~~a~~~~-vv~a~N~si 131 (273)
T 1dih_A 58 TGVTVQSSLDAVK-DDFDVFI--DFTRP-EGTLNHLAFCRQHGKG-MVIGTTGFDEAGKQAIRDAAADIA-IVFAANFSV 131 (273)
T ss_dssp CSCCEESCSTTTT-TSCSEEE--ECSCH-HHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHTTTSC-EEECSCCCH
T ss_pred CCceecCCHHHHh-cCCCEEE--EcCCh-HHHHHHHHHHHhCCCC-EEEECCCCCHHHHHHHHHhcCCCC-EEEEecCcH
Confidence 3577888888855 4566544 35644 5678888888889987 666677999988889998887765 688888 55
Q ss_pred ccc
Q psy16953 333 GGL 335 (806)
Q Consensus 333 Gii 335 (806)
|+.
T Consensus 132 Gvn 134 (273)
T 1dih_A 132 GVN 134 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 46
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=95.77 E-value=0.018 Score=59.89 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=65.9
Q ss_pred ceEEEEccChhHHHh----hhhcccccccCCCcccceeEe-ecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQTRAVQS----MLDFDFVCRRSEPSVAAMVYP-FTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~r~~~~----ll~~gf~~~~~~~~~~g~iyp-vnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.||+|+|. ++.-+. +.+.+ . ++.- +.++. ....++|+|.++++ +. .+|+.|-
T Consensus 4 mkI~ViGa-GrMG~~i~~~l~~~~----------~-eLva~~d~~~-------~~~~gv~v~~dl~~-l~-~~DVvID-- 60 (243)
T 3qy9_A 4 MKILLIGY-GAMNQRVARLAEEKG----------H-EIVGVIENTP-------KATTPYQQYQHIAD-VK-GADVAID-- 60 (243)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT----------C-EEEEEECSSC-------C--CCSCBCSCTTT-CT-TCSEEEE--
T ss_pred eEEEEECc-CHHHHHHHHHHHhCC----------C-EEEEEEecCc-------cccCCCceeCCHHH-Hh-CCCEEEE--
Confidence 48999999 665333 33322 1 3333 23321 13356999999999 55 6665443
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
|..|. ++.+.++ .+.|++ +|+-+.||.++..++|.++|++.++ ++-||.
T Consensus 61 ft~p~-a~~~~~~--l~~g~~-vVigTTG~s~e~~~~l~~aa~~~~v-~~a~N~ 109 (243)
T 3qy9_A 61 FSNPN-LLFPLLD--EDFHLP-LVVATTGEKEKLLNKLDELSQNMPV-FFSANM 109 (243)
T ss_dssp CSCHH-HHHHHHT--SCCCCC-EEECCCSSHHHHHHHHHHHTTTSEE-EECSSC
T ss_pred eCChH-HHHHHHH--HhcCCc-eEeCCCCCCHHHHHHHHHHHhcCCE-EEECCc
Confidence 66554 5556666 558887 5567889998888999999988665 888884
No 47
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=95.69 E-value=0.028 Score=61.98 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=72.3
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-....|.|+...+ ..+.||||+|.|+.. +.+|-+++++||+|..|+.++.+-+..-|. .|..-+.. + ..
T Consensus 11 l~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~-~~~feev~yLLl~G~lPt~~el~~f~~~l~---~~~~lp~~-~-~~ 84 (375)
T 3tqg_A 11 LRGQSAGETSIATVGKEGHGLTYRGYRIEDLAA-NATFEEVAYLLLKNKLPTKSELDAYTKKLV---NLRSLPPA-L-KD 84 (375)
T ss_dssp -----CCEESSEEECTTSCCEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHH---TTCCCCHH-H-HH
T ss_pred cCCCeEeeeeceEEeCCCCEEEECCeeHHHHHh-cCCHHHHHHHHHcCcCcCHHHHHHHHHHHH---HccCCCHH-H-HH
Confidence 3444666778877654 569999999999875 579999999999999999888888888774 44433333 1 22
Q ss_pred eeec--cCCChHHHHHHhhcccc---ccc--CChHHHHHHHHHHH
Q psy16953 618 VCAR--AGKDLVSSLVSGLLTIG---DRF--GGALNDAAIQFSAA 655 (806)
Q Consensus 618 v~aS--a~adl~~avaagl~alG---~~h--GGA~~~a~~~l~e~ 655 (806)
+..+ ..+++-..+.+++++++ |-. -...+.+++++..+
T Consensus 85 ~~~~~p~~~hpM~~l~~~v~aL~~~~~~~~~~~~~~~a~~LiAk~ 129 (375)
T 3tqg_A 85 TLERIPASSHPMDVMRTGCSMLGNLEPENGFENEQNIADRLVAIF 129 (375)
T ss_dssp HHHTSCTTSCHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 2222 24678888888888874 222 22345666666554
No 48
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=95.57 E-value=0.035 Score=61.27 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=73.7
Q ss_pred cccccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++.-....|.|+...+ ..+.||||+|.|+.. +.+|-++.++||+|+.|+.++.+-+...|. +|..-+....
T Consensus 6 ~G-l~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~-~~~feeva~LL~~G~lPt~~el~~f~~~l~---~~~~lp~~~~ 80 (377)
T 1o7x_A 6 KG-LENVIIKVTNLTFIDGEKGILRYRGYNIEDLVN-YGSYEETIYLMLYGKLPTKKELNDLKAKLN---EEYEVPQEVL 80 (377)
T ss_dssp GG-GTTCEEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHH---TCCCCCHHHH
T ss_pred cc-cCCCeeeeeeCeEEECCCCEEEECCccHHHHHc-CCCHHHHHHHHHCCCCcCHHHHHHHHHHHH---HccCCCHHHH
Confidence 45 4455667888887766 469999999999886 579999999999999999988888887774 3333222211
Q ss_pred eeeeeeccCCChHHHHHHhhcccccc------cCChHHHHHHHHHHH
Q psy16953 615 NTIVCARAGKDLVSSLVSGLLTIGDR------FGGALNDAAIQFSAA 655 (806)
Q Consensus 615 aarv~aSa~adl~~avaagl~alG~~------hGGA~~~a~~~l~e~ 655 (806)
...-.....+++-..+.+++++++.. .-...+.+++++...
T Consensus 81 ~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~a~~Lia~~ 127 (377)
T 1o7x_A 81 DTIYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKM 127 (377)
T ss_dssp HHHHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHhCcccCCcHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHH
Confidence 11111123467777777777666322 112335566666544
No 49
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=95.55 E-value=0.0085 Score=65.97 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=72.5
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-....|.|+...+ ..+.||||+|.|+.+ +.+|.++.++||+|+.|+..+.+-++..|.-+ ..-+.......
T Consensus 6 l~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~-~~~feeva~LLl~G~lPt~~el~~f~~~l~~~---~~lp~~~~~~~ 81 (367)
T 2p2w_A 6 LEGVKICESSICYLDGINGRLYYRGIPVEELAE-KSTFEETAYFLWYGKLPTKSELEEFKRKMADY---RELPAEALGIL 81 (367)
T ss_dssp CTTCCCCCCSSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHT---CCCCHHHHHHH
T ss_pred CCCCeeeeeeCeEEECCCCEEEECCeeHHHHHc-CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cCCCHHHHHHH
Confidence 3444567888887766 469999999999886 58999999999999999998888888777543 32222211111
Q ss_pred eeeccCCChHHHHHHhhccccccc---CChHHHHHHHHHHH
Q psy16953 618 VCARAGKDLVSSLVSGLLTIGDRF---GGALNDAAIQFSAA 655 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG~~h---GGA~~~a~~~l~e~ 655 (806)
-.....+++-..+.+++++++... -...+.+++++...
T Consensus 82 ~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~a~~lia~~ 122 (367)
T 2p2w_A 82 YHLPKNLHYIDVLKIFLSIHGSMDGNDEDLREKAIRVASVF 122 (367)
T ss_dssp TTSCSCCCHHHHHHHHHSCC-------CHHHHHHHHHHHHH
T ss_pred HhCccCCChHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 111234778888888888885431 11223455555443
No 50
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=95.53 E-value=0.051 Score=56.49 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=48.6
Q ss_pred ccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHc-CCe-EEccC
Q psy16953 260 KKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEK-GVS-IIGPA 330 (806)
Q Consensus 260 ~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~-gir-iiGPN 330 (806)
.++++.+...+|+.|- |..| ++..+.++.|.+.|++ +||-|.||.+++.++|.++|+++ ++. ++.||
T Consensus 36 ~dl~~~~~~~~DvvID--fT~p-~a~~~~~~~a~~~g~~-~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N 104 (245)
T 1p9l_A 36 DPLSLLTDGNTEVVID--FTHP-DVVMGNLEFLIDNGIH-AVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 104 (245)
T ss_dssp CCTHHHHHTTCCEEEE--CSCT-TTHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred CCHHHHhccCCcEEEE--ccCh-HHHHHHHHHHHHcCCC-EEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3455633335675443 5544 5778889999889987 56668899998888899999876 774 78888
No 51
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=95.51 E-value=0.023 Score=62.72 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=71.8
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-....|.|+...+ ..+.||||+|.|+.. +.+|-++.++||+|..|+..+.+-++..|.-+ ..-+.......
T Consensus 7 l~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~-~~~fEeva~LLl~G~lPt~~el~~f~~~l~~~---~~lp~~~~~~~ 82 (373)
T 1vgp_A 7 LEDVYVKETEITYIDGELGRLYYRGYSIYDLAE-FSNFEEVSYLILYGKLPNREELNWFQEKLREE---RYLPDFIIKFL 82 (373)
T ss_dssp CTTCCCCCCSSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHT---CCCCHHHHHHH
T ss_pred cCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHc-cCCHHHHHHHHHCCCCcCHHHHHHHHHHHHHc---cCCCHHHHHHH
Confidence 3444566778877766 469999999999876 57999999999999999998888888777543 32222211111
Q ss_pred eeeccCCChHHHHHHhhcccccc--c--CChHHHHHHHHHHH
Q psy16953 618 VCARAGKDLVSSLVSGLLTIGDR--F--GGALNDAAIQFSAA 655 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG~~--h--GGA~~~a~~~l~e~ 655 (806)
-.....+++-..+.+++++++.. . -...+.+++++...
T Consensus 83 ~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~a~~Lia~~ 124 (373)
T 1vgp_A 83 REVRKDAQPMDILRTAVSLLGIEDSKNDERTDIKGIKLISKF 124 (373)
T ss_dssp HHSCTTSCHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHH
T ss_pred HhCCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 11122467777777777766322 1 12234466666544
No 52
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=95.49 E-value=0.021 Score=63.04 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-....|.|+...+ ..+.||||+|.|+.. +.+|-++.++||+|..|+.++.+-++..|.-+ ..-+.......
T Consensus 7 l~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~-~~~fEeva~LLl~G~lPt~~el~~f~~~l~~~---~~lp~~~~~~~ 82 (377)
T 1iom_A 7 LEGVLFTESRMCYIDGQQGKLYYYGIPIQELAE-KSSFEETTFLLLHGRLPRRQELEEFSAALARR---RALPAHLLESF 82 (377)
T ss_dssp GTTCCCSCCSSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHT---CSCCHHHHHHH
T ss_pred cCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHc-cCCHHHHHHHHHCCCCcCHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence 3445567788877766 469999999999876 57999999999999999998888888877543 32222211110
Q ss_pred eeeccCCChHHHHHHhhcccc
Q psy16953 618 VCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG 638 (806)
-.....+++-..+.+++++++
T Consensus 83 ~~~p~~~hpM~~l~~~v~~l~ 103 (377)
T 1iom_A 83 KRYPVSAHPMSFLRTAVSEFG 103 (377)
T ss_dssp TTSCTTSCHHHHHHHHHHHHH
T ss_pred HhCCcCCCchhHHHHHHHHHh
Confidence 111224677777777776663
No 53
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=95.43 E-value=0.052 Score=59.96 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=73.2
Q ss_pred cccccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++.-....|.|+...+ ..+.||||+|.|+.. +-+|-++.++||+|..|+.++.+-+...|.- |..-+....
T Consensus 7 ~G-l~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~-~~~fEeva~LL~~G~lP~~~el~~f~~~l~~---~~~lp~~~~ 81 (378)
T 1vgm_A 7 RG-LENVIIKTTGLTYIDGINGILRYRGYDINDLVN-YASYEELIHLMLYGELPNRQQLNQIKGIINE---SFEVPEQVI 81 (378)
T ss_dssp GG-GTTCEEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHT---CCCCCHHHH
T ss_pred Cc-cCCCeeeeeeceEEECCCCeEEEcCeeHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHHHH
Confidence 45 4455667888887766 469999999999876 5799999999999999999888888877743 333222211
Q ss_pred eeeeeeccCCChHHHHHHhhcccccc------cCChHHHHHHHHHHH
Q psy16953 615 NTIVCARAGKDLVSSLVSGLLTIGDR------FGGALNDAAIQFSAA 655 (806)
Q Consensus 615 aarv~aSa~adl~~avaagl~alG~~------hGGA~~~a~~~l~e~ 655 (806)
...-.....+++-..+.+++++++.. .-...+.+++++...
T Consensus 82 ~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~a~~Lia~~ 128 (378)
T 1vgm_A 82 STIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAVQIIAKT 128 (378)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHHHHHCCCCCTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHH
Confidence 11001122467777677666666321 112234566666544
No 54
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=95.41 E-value=0.053 Score=60.05 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=65.8
Q ss_pred cccccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++.-....|.|+...++ .+.||||+|.|+..++-+|-++.++||+|..|+.++.+-+..-|.-+. .-+....
T Consensus 9 ~G-l~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~~fEeva~LLl~G~lPt~~el~~f~~~l~~~~---~lp~~~~ 84 (385)
T 2ifc_A 9 KG-LEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGY---KIPDFVI 84 (385)
T ss_dssp GG-GTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTCCHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG---CCCHHHH
T ss_pred CC-cCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcCCCHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc---CCCHHHH
Confidence 46 45556778888887664 699999999998763579999999999999999988888887775432 2221111
Q ss_pred eeeeeeccCCChHHHHHHhhccc
Q psy16953 615 NTIVCARAGKDLVSSLVSGLLTI 637 (806)
Q Consensus 615 aarv~aSa~adl~~avaagl~al 637 (806)
...-.....+++-..+.++++++
T Consensus 85 ~~~~~~p~~~hpM~~l~~~v~~l 107 (385)
T 2ifc_A 85 NAIRQLPRESDAVAMQMAAVAAM 107 (385)
T ss_dssp HHHHTSCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCchHHHHHHHHHH
Confidence 11001122366766666666666
No 55
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=95.16 E-value=0.035 Score=61.35 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred cccccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++--....|.|+...+ ..+.||||+|.|+.. +.+|-+++++||+|..|+.++.+-+...|. +|..-+....
T Consensus 7 ~G-l~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~-~~~fEeva~LLl~G~lP~~~el~~f~~~l~---~~~~lp~~~~ 81 (378)
T 1a59_A 7 KG-LAGVTADVTAISKVNSDTNSLLYRGYPVQELAA-KCSFEQVAYLLWNSELPNDSELKAFVNFER---SHRKLDENVK 81 (378)
T ss_dssp GG-GTTCCCCCCSSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHH---TSCSCCHHHH
T ss_pred Cc-cCCCeeeeeeceEEECCCCeEEEcCccHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCCCCHHHH
Confidence 35 4455666778877766 469999999999876 579999999999999999988888887774 3433222211
Q ss_pred eeeeeeccCCChHHHHHHhhcccc
Q psy16953 615 NTIVCARAGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 615 aarv~aSa~adl~~avaagl~alG 638 (806)
...-.....+++-..+.+++++++
T Consensus 82 ~~~~~~p~~~hpM~~l~~~v~~l~ 105 (378)
T 1a59_A 82 GAIDLLSTACHPMDVARTAVSVLG 105 (378)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHH
Confidence 110011224677777777776663
No 56
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=94.95 E-value=0.044 Score=61.09 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred cccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
+--....|.|+...+ ..+.||||+|.|+.. +.+|-+++++||+|..|+.++.+-+..-|.-+ ..-+.. ...+
T Consensus 54 ~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~-~~~fEevayLLl~G~LPt~~el~~f~~~l~~~---~~lp~~--v~~~ 127 (414)
T 3hwk_A 54 AGVVVDTTAISKVVPQTNSLTYRGYPVQDLAA-RCSFEQVAFLLWRGELPTDAELALFSQRERAS---RRVDRS--MLSL 127 (414)
T ss_dssp TTCEEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHT---CCCCHH--HHHH
T ss_pred CCCeeeeeeceEEeCCCCEEEECCeEHHHHHh-cCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---cCCCHH--HHHH
Confidence 444566777776654 569999999998875 57999999999999999988888887777443 222222 1112
Q ss_pred eec--cCCChHHHHHHhhccccccc------CChHHHHHHHHHHH
Q psy16953 619 CAR--AGKDLVSSLVSGLLTIGDRF------GGALNDAAIQFSAA 655 (806)
Q Consensus 619 ~aS--a~adl~~avaagl~alG~~h------GGA~~~a~~~l~e~ 655 (806)
..+ ..+++-..+.+++++++... -...+.+++++..+
T Consensus 128 i~~~p~~~hPM~~l~~~vsaL~~~~~~~~~~~~~~~~a~rLiAk~ 172 (414)
T 3hwk_A 128 LAKLPDNCHPMDVVRTAISYLGAEDPDEDDAAANRAKAMRMMAVL 172 (414)
T ss_dssp HHHSCTTSCHHHHHHHHHHHHHHTCTTTTCGGGHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHHH
Confidence 222 24677777777777774221 12235566666544
No 57
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=94.89 E-value=0.035 Score=61.70 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=63.8
Q ss_pred cccccccccceecccccc--ccccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDER--GQELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~--~~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++.-..-.|.|+... ...+.||||+|.|+.. +-+|-+++++||+|..|+.++.+-|..-|. .|..-+.. +
T Consensus 35 ~G-l~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~-~~~fEevayLLl~G~LPt~~el~~f~~~l~---~~~~lp~~-~ 108 (404)
T 3o8j_A 35 VA-LSGVPAGNTALCTVGKSGNDLHYRGYDILDLAE-HCEFEEVAHLLIHGKLPTRDELNAYKSKLK---ALRGLPAN-V 108 (404)
T ss_dssp -------CCCEESSEEECC-CCCEEETTEEHHHHHH-HCCHHHHHHHHHTSSCCCHHHHHHHHHHHH---TTCCCCHH-H
T ss_pred CC-CCCceEeeeeceeeeCCCCEEEECCeEHHHHHh-cCCHHHHHHHHHcCcCCCHHHHHHHHHHHH---HccCCCHH-H
Confidence 44 345566677887765 4579999999998875 578999999999999999888888887774 34333332 1
Q ss_pred eeeeeec--cCCChHHHHHHhhcccc
Q psy16953 615 NTIVCAR--AGKDLVSSLVSGLLTIG 638 (806)
Q Consensus 615 aarv~aS--a~adl~~avaagl~alG 638 (806)
..+..+ ..+++-..+.+++++|+
T Consensus 109 -~~~~~~~p~~~hPM~~L~~~vsaL~ 133 (404)
T 3o8j_A 109 -RTVLEALPAASHPMDVMRTGVSALG 133 (404)
T ss_dssp -HHHHHTSCTTSCHHHHHHHHHHHHH
T ss_pred -HHHHHhCCCCCChHHHHHHHHHHHH
Confidence 122222 34678778888777773
No 58
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=94.71 E-value=0.06 Score=60.27 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=63.7
Q ss_pred ccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
....|.|+...+ ..+.||||+|.|+.. +-+|-+++++||+|..|+.++.+-++.-|.- |..-+.. + .++..+
T Consensus 50 ~~~~s~is~iDg~~G~L~YRGy~I~dLa~-~~~feevayLLl~G~LPt~~el~~f~~~l~~---~~~lp~~-~-~~~~~~ 123 (426)
T 3l96_A 50 TSCESKITFIDGDEGILLHRGFPIDQLAT-DSNYLEVCYILLNGEKPTQEQYDEFKTTVTR---HTMIHEQ-I-TRLFHA 123 (426)
T ss_dssp EEEEESSEEEEGGGTEEEETTEEHHHHHH-HSCHHHHHHHHHHSSCCCHHHHHHHHHHHHH---TCSCCHH-H-HHHHTT
T ss_pred eEEeEEeEEEECCCCEEEECCeEHHHHHh-cCCHHHHHHHHHCCcCCCHHHHHHHHHHHHH---ccCCCHH-H-HHHHHh
Confidence 455666665544 457999999998875 5799999999999999998888888887743 3332322 1 222333
Q ss_pred c--CCChHHHHHHhhccccc
Q psy16953 622 A--GKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 622 a--~adl~~avaagl~alG~ 639 (806)
- .+++-..+.+++++++.
T Consensus 124 ~p~~~hPM~~l~~~vsaL~~ 143 (426)
T 3l96_A 124 FRRDSHPMAVMCGITGALAA 143 (426)
T ss_dssp SCTTSCHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 2 47888888888888853
No 59
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.013 Score=51.87 Aligned_cols=71 Identities=8% Similarity=-0.082 Sum_probs=51.5
Q ss_pred ccchhchHHHHHhhCCCCccccccc--ccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHH
Q psy16953 5 AISEATGKDIINRNLDPNTAAAKCR--FAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQS 82 (806)
Q Consensus 5 ~i~Ey~~K~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~ 82 (806)
.-..+..|++|.+++. |++ +.. . .++.+++......++ .|+||||..-.+++ +|.+..|.+|+++
T Consensus 6 ~~dK~~~~~~l~~~gi--p~p-~~~~~~-----~~~~~~~~~~~~~~~-~P~vvKp~~~~~~~----gv~~v~~~~el~~ 72 (108)
T 2cqy_A 6 SGDKIESKLLAKKAEV--NTI-PGFDGV-----VKDAEEAVRIAREIG-YPVMIKASAGGGGK----GMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCCSTTCCCSSCC--CCC-SCCCSC-----BSSHHHHHHHHHHHC-SSEEEEETTSCCTT----TCEEESSHHHHHH
T ss_pred hcCHHHHHHHHHHcCC--CCC-CCcccc-----cCCHHHHHHHHHhcC-CCEEEEECCCCCCc----cEEEeCCHHHHHH
Confidence 3456788899999988 666 443 3 467888877666666 69999999754333 4666678999999
Q ss_pred HHHHHc
Q psy16953 83 WISERM 88 (806)
Q Consensus 83 ~~~~~~ 88 (806)
++++.+
T Consensus 73 ~~~~~~ 78 (108)
T 2cqy_A 73 GFRLSS 78 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 60
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=94.66 E-value=0.01 Score=66.66 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=68.1
Q ss_pred cccccccccceeccccccccc-cccCCCCccccccCCC---------CHHHHHHHHHhcCCCChHHHHHHHHHhhhccCC
Q psy16953 537 LGLIRKPASFMTSICDERGQE-LLYAGMPISDVLKQNM---------GIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADH 606 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~~-i~~~G~~i~~~i~~~~---------s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADH 606 (806)
.| ++.-..+.|.|+...+++ +.||||+|.|+.+ +. +|.+++|+||+|+.|+..+.+.++..|.-+.
T Consensus 41 ~G-l~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~-~~~~~~~~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~-- 116 (435)
T 1csh_A 41 GG-MRGMKGLIYETSVLDPDEGIRFRGFSIPECQK-LLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRA-- 116 (435)
T ss_dssp TT-TTTCCCCCCCSEEEETTTEEEETTEEHHHHHH-HSCBCTTCCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHC--
T ss_pred cC-cCCCeeeeeeeeEEcCCCCeeECCccHHHHHh-hCcccccCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc--
Confidence 45 555667788887776433 8999999998876 33 6999999999999999999888888775443
Q ss_pred CCCCcccceeeeeeccCCChHHHHHHhhccccc
Q psy16953 607 GPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGD 639 (806)
Q Consensus 607 g~~~St~~aarv~aSa~adl~~avaagl~alG~ 639 (806)
.-+.......-..-..+++-..+.+++++++.
T Consensus 117 -~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~ 148 (435)
T 1csh_A 117 -ALPSHVVTMLDNFPTNLHPMSQLSAAITALNS 148 (435)
T ss_dssp -CCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGG
T ss_pred -CCCHHHHHHHHhCCccCChHHHHHHHHHHHhh
Confidence 22222121111122346788888888888854
No 61
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=94.39 E-value=0.054 Score=59.50 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=73.6
Q ss_pred ccccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceee
Q psy16953 540 IRKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI 617 (806)
Q Consensus 540 ~r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aar 617 (806)
++.-....|.|+...+ ..+.||||+|.|+.. +-+|-++.++||+|..|+.++.+-+...|.-+. .-+.......
T Consensus 5 l~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~-~~~fEeva~LL~~G~lP~~~el~~f~~~l~~~~---~lp~~~~~~~ 80 (363)
T 2c6x_A 5 LKGITCVETSISHIDGEKGRLIYRGHHAKDIAL-NHSFEEAAYLILFGKLPSTEELQVFKDKLAAER---NLPEHIERLI 80 (363)
T ss_dssp GTTCCCEEESSEEEETTTTEEEETTEEHHHHHH-HSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT---SCCHHHHHHH
T ss_pred CCCCeeeeeeCeEEECCCCEEEEcCccHHHHHc-cCCHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc---CCCHHHHHHH
Confidence 3444566778877766 469999999999876 579999999999999999988888887775432 2221111110
Q ss_pred eeeccCCChHHHHHHhhccccc-c--cCChHHHHHHHHHHH
Q psy16953 618 VCARAGKDLVSSLVSGLLTIGD-R--FGGALNDAAIQFSAA 655 (806)
Q Consensus 618 v~aSa~adl~~avaagl~alG~-~--hGGA~~~a~~~l~e~ 655 (806)
-.....+++-..+.+++++++. . .-...+.+++++...
T Consensus 81 ~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~a~~Lia~~ 121 (363)
T 2c6x_A 81 QSLPNNMDDMSVLRTVVSALGENTYTFHPKTEEAIRLIAIT 121 (363)
T ss_dssp HHSCSSSCHHHHHHHHHHHHCCSSCCSSCCHHHHHHHHHHH
T ss_pred HhCcccCCchHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Confidence 0112346788888888888843 1 112345566766554
No 62
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=94.30 E-value=0.13 Score=53.79 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=73.7
Q ss_pred CCceEEEEccCh--hH-HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT--RA-VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~--r~-~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.+.+|++||.+. +. ++. + +| .+.| +|- .+. .++++.++.++++ +...||++|=
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~l-------eLv~-v~~--~k~--------gelgv~a~~d~d~-lla~pD~VVe-- 66 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NF-------EKIY-AYD--RIS--------KDIPGVVRLDEFQ-VPSDVSTVVE-- 66 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CC-------SEEE-EEC--SSC--------CCCSSSEECSSCC-CCTTCCEEEE--
T ss_pred ccceEEEECcCHHHHHHHhc--C-Cc-------EEEE-EEe--ccc--------cccCceeeCCHHH-HhhCCCEEEE--
Confidence 567999999874 33 333 3 44 2233 554 332 2446778899999 4468888666
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCC--CHHHHHHHHHHHHHcCCeEEccC
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGI--PENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf--~E~~~~~l~~~a~~~giriiGPN 330 (806)
+.+..++.+.++.+-++|+. +++.|.|. .+++.++|.++|+++|.++.+|.
T Consensus 67 -~A~~~av~e~~~~iL~aG~d-vv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpS 119 (253)
T 1j5p_A 67 -CASPEAVKEYSLQILKNPVN-YIIISTSAFADEVFRERFFSELKNSPARVFFPS 119 (253)
T ss_dssp -CSCHHHHHHHHHHHTTSSSE-EEECCGGGGGSHHHHHHHHHHHHTCSCEEECCC
T ss_pred -CCCHHHHHHHHHHHHHCCCC-EEEcChhhhcCHHHHHHHHHHHHHCCCeEEecC
Confidence 77778888877777778876 66667664 55778999999999999998874
No 63
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=94.01 E-value=0.022 Score=62.83 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=64.2
Q ss_pred cccccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeee
Q psy16953 541 RKPASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIV 618 (806)
Q Consensus 541 r~~~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv 618 (806)
+.-....|.|+...+ ..+.||||+|.|+.. +.+|-++.++||+|..|+.++.+-+...|. +|..-+.......-
T Consensus 6 ~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~-~~~fEeva~LLl~G~lP~~~el~~f~~~l~---~~~~lp~~~~~~~~ 81 (371)
T 1aj8_A 6 EDVYIDQTNICYIDGKEGKLYYRGYSVEELAE-LSTFEEVVYLLWWGKLPSLSELENFKKELA---KSRGLPKEVIEIME 81 (371)
T ss_dssp TTCEEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHH---TTCCCCHHHHHHHH
T ss_pred CCCeeeeeeCeEEECCCCEEEEcCccHHHHHc-cCCHHHHHHHHHCCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHH
Confidence 444567888887766 469999999999876 579999999999999999988888887774 34333322111111
Q ss_pred eeccCCChHHHHHHhhccc
Q psy16953 619 CARAGKDLVSSLVSGLLTI 637 (806)
Q Consensus 619 ~aSa~adl~~avaagl~al 637 (806)
.....+++-..+.++++++
T Consensus 82 ~~p~~~hpM~~l~~~v~~l 100 (371)
T 1aj8_A 82 ALPKNTHPMGALRTIISYL 100 (371)
T ss_dssp HSCTTCCHHHHHHHHHHHH
T ss_pred hCCCCCChHHHHHHHHHHH
Confidence 1122467766666666666
No 64
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=93.91 E-value=0.23 Score=53.44 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=62.4
Q ss_pred CceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
.-++.|+|.+.. .++.+.+.. .-+|.-|-.... +..++++|.++++.+...+|+++++|
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~----------~~~lvav~d~~~-------~~~g~~~~~~~~~ll~~~~~vD~V~i 87 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNA----------NFKLVATASRHG-------TVEGVNSYTTIEAMLDAEPSIDAVSL 87 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCT----------TEEEEEEECSSC-------CCTTSEEESSHHHHHHHCTTCCEEEE
T ss_pred CceEEEEecCHHHHHHHHHHHHhCC----------CeEEEEEEeCCh-------hhcCCCccCCHHHHHhCCCCCCEEEE
Confidence 468999998753 344555432 123333322211 12358899999996554244555555
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++....+-+++++. +| |.++|=-. ....+..++|.++|+++|+.+
T Consensus 88 ~tp~~~H~~~~~~al~-aG-khVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 135 (330)
T 4ew6_A 88 CMPPQYRYEAAYKALV-AG-KHVFLEKPPGATLSEVADLEALANKQGASL 135 (330)
T ss_dssp CSCHHHHHHHHHHHHH-TT-CEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred eCCcHHHHHHHHHHHH-cC-CcEEEeCCCCCCHHHHHHHHHHHHhcCCeE
Confidence 5555555555555554 78 44443221 445578889999999999755
No 65
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=93.90 E-value=0.065 Score=59.96 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=68.7
Q ss_pred ccceeccccccc--cccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccceeeeeec
Q psy16953 544 ASFMTSICDERG--QELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCAR 621 (806)
Q Consensus 544 ~~~~t~i~d~~~--~~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~aarv~aS 621 (806)
....|.|+...+ ..+.||||+|.|+.. +-+|-+++++||+|..|+.++.+-++.-|.-+ ..-+.. ..++..+
T Consensus 59 ~~~~s~is~iDg~~G~L~YRGy~I~dLa~-~~~feevayLLl~G~LPt~~el~~f~~~l~~~---~~lp~~--~~~~i~~ 132 (427)
T 3msu_A 59 AACESKITYIDGGKGVLLHRGYPIEEWTQ-KSNYRTLCYALIYGELPTDEQVKSFRQEIINK---MPVCEH--VKAAIAA 132 (427)
T ss_dssp EEEEESSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHH---CCCCHH--HHHHHHH
T ss_pred eEEEEEeeEEeCCCCEEEECCeEHHHHhc-cCCHHHHHHHHHcCcCCCHHHHHHHHHHHHHc---cCCCHH--HHHHHHh
Confidence 456667765544 457999999998875 57899999999999999988888787777443 222222 1222222
Q ss_pred c--CCChHHHHHHhhccccccc------CChHHHHHHHHHHH
Q psy16953 622 A--GKDLVSSLVSGLLTIGDRF------GGALNDAAIQFSAA 655 (806)
Q Consensus 622 a--~adl~~avaagl~alG~~h------GGA~~~a~~~l~e~ 655 (806)
- .+++-..+.+++++++..+ --..+.+++++..+
T Consensus 133 ~p~~~hPM~~L~~~v~aL~~~~~~~~~~~~~~~~a~rLiAk~ 174 (427)
T 3msu_A 133 MPQHTHPMSSLIAGVNVLAAEHIHNGQKESQDEVAKNIVAKI 174 (427)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 2 3577778888877774221 12234556665543
No 66
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=93.47 E-value=0.22 Score=50.69 Aligned_cols=108 Identities=13% Similarity=0.170 Sum_probs=66.8
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCccccee-EeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMV-YPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~i-ypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+. ...+++.+.|| ++ .-.+++.+ . -.+|.++++++...+|++++ +
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~-----------~lv~v~d~~~~---------~-~~~~~~~~~l~~~~~DvVv~---~ 57 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGF-----------EIAAILDVRGE---------H-EKMVRGIDEFLQREMDVAVE---A 57 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-----------EEEEEECSSCC---------C-TTEESSHHHHTTSCCSEEEE---C
T ss_pred EEEEECCCHHHHHHHHHHhcCCC-----------EEEEEEecCcc---------h-hhhcCCHHHHhcCCCCEEEE---C
Confidence 688999853 23556665565 33 23333310 0 12789999944345666555 4
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHH-HHHHHHHHHcCCe-EEccCcccccc
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMT-RKLNLLAKEKGVS-IIGPATVGGLK 336 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~-~~l~~~a~~~gir-iiGPN~~Gii~ 336 (806)
+|.....+.+.++.++|. .+++.+.+... ... ++|.+.++++|.. ++-||+.|-+.
T Consensus 58 ~~~~~~~~~~~~~l~~G~-~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~ 116 (236)
T 2dc1_A 58 ASQQAVKDYAEKILKAGI-DLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLD 116 (236)
T ss_dssp SCHHHHHHHHHHHHHTTC-EEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHH
T ss_pred CCHHHHHHHHHHHHHCCC-cEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChH
Confidence 455566666666665786 46666666543 333 7899999999988 57888777653
No 67
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=93.46 E-value=0.099 Score=58.46 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=53.9
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+|+. |++ +..+ .++.+++.+....++ .++||||+.+.+++| |.+..|.+|+++++++
T Consensus 107 dK~~~k~~l~~~GI--ptp-~~~~-----~~~~~ea~~~~~~~g-~PvVvKp~~~~gg~G----V~iv~~~~el~~a~~~ 173 (431)
T 3mjf_A 107 SKAFTKDFLARHNI--PSA-EYQN-----FTDVEAALAYVRQKG-APIVIKADGLAAGKG----VIVAMTQEEAETAVND 173 (431)
T ss_dssp CHHHHHHHHHHTTC--SBC-CEEE-----ESCHHHHHHHHHHHC-SSEEEEESSSCTTCS----EEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-CeEe-----eCCHHHHHHHHHHcC-CeEEEEECCCCCCCc----EEEeCCHHHHHHHHHH
Confidence 34668899999988 776 5554 578888877666665 699999998776653 6677799999999998
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 174 ~~ 175 (431)
T 3mjf_A 174 ML 175 (431)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 68
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=93.31 E-value=0.069 Score=64.07 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=48.6
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhcc-ccccCCCeEEccCccccccCccCceeecC---CHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNE-PWLESSKLVAKPDQLIKRRGKLGLIKVNT---DFKGAQSW 83 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~~VvKpd~l~~~RGK~Glv~l~~---~~~e~~~~ 83 (806)
.+.+|++|.+++. |++ +..+ .++.+++.+.. ..++ .++||||.. |..|| +|.+.. |.+|+++.
T Consensus 485 K~~tk~lL~~~GI--PvP-~~~~-----~~~~~ea~~~~~~~~g-~PvVVKP~~--G~~G~--GV~iv~~~~s~eel~~a 551 (750)
T 3ln6_A 485 KVVTKKILDEKHF--PTP-FGDE-----FTDRKEALNYFSQIQD-KPIVVKPKS--TNFGL--GISIFKTSANLASYEKA 551 (750)
T ss_dssp SHHHHHHHHHTTC--CCC-CCCC-----EETTTTHHHHHHHSSS-SCEEEEETT--CCSSS--SCEEESSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCc--CCC-CEEE-----ECCHHHHHHHHHHhcC-CcEEEEeCC--CCCCC--CEEEEeCCCCHHHHHHH
Confidence 4568999999998 877 5555 34566665544 4455 799999965 55566 455554 89999999
Q ss_pred HHHHc
Q psy16953 84 ISERM 88 (806)
Q Consensus 84 ~~~~~ 88 (806)
+++.+
T Consensus 552 ~~~~~ 556 (750)
T 3ln6_A 552 IDIAF 556 (750)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 69
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=93.17 E-value=0.1 Score=57.38 Aligned_cols=112 Identities=10% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCCceEEEEccC-hhH-HHhhhhc--ccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeE
Q psy16953 199 GQEQTKAIVWGMQ-TRA-VQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADV 274 (806)
Q Consensus 199 ~~~~t~v~V~G~~-~r~-~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlav 274 (806)
-+++-||+|+|.+ ++. ++.+.+. +| .+. .|+=.++...+++ .++.|+|+|.|+++ +.+.+|+++
T Consensus 4 ~~~~~rv~VvG~G~g~~h~~a~~~~~~~~-------elv-av~~~~~~~a~~~---a~~~gv~~~~~~~~-l~~~~D~v~ 71 (372)
T 4gmf_A 4 ASPKQRVLIVGAKFGEMYLNAFMQPPEGL-------ELV-GLLAQGSARSREL---AHAFGIPLYTSPEQ-ITGMPDIAC 71 (372)
T ss_dssp ---CEEEEEECSTTTHHHHHTTSSCCTTE-------EEE-EEECCSSHHHHHH---HHHTTCCEESSGGG-CCSCCSEEE
T ss_pred CCCCCEEEEEehHHHHHHHHHHHhCCCCe-------EEE-EEECCCHHHHHHH---HHHhCCCEECCHHH-HhcCCCEEE
Confidence 3567899999975 332 4444443 22 111 2332333211122 13446999999999 788888877
Q ss_pred EEeecCChhhH----HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 275 LVNFASLRSAY----DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 275 ivi~~~~~~~~----~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
| ++|...- .++.++|-++|.. ++|==. +..++.++|+++|+++|+.+.
T Consensus 72 i---~~p~~~h~~~~~~~a~~al~aGkh-Vl~EKP-l~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 72 I---VVRSTVAGGAGTQLARHFLARGVH-VIQEHP-LHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp E---CCC--CTTSHHHHHHHHHHHTTCE-EEEESC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred E---ECCCcccchhHHHHHHHHHHcCCc-EEEecC-CCHHHHHHHHHHHHHcCCEEE
Confidence 7 5554332 3344444447764 555322 455678899999999998663
No 70
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=92.79 E-value=0.6 Score=49.84 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeeccc-ccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIP-VYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p-~y~sv~daip~~~Dlavivi 277 (806)
.-++.|+|.+.. .++.+...+. ..+ -.|+-.++...+++ .+..+++ +|.+.++ +-+.+|+++++|
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~------~~~-~av~d~~~~~~~~~---a~~~~~~~~~~~~~~-ll~~~~~D~V~i 73 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGN------GEV-VAVSSRTLESAQAF---ANKYHLPKAYDKLED-MLADESIDVIYV 73 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCS------EEE-EEEECSCSSTTCC------CCCCSCEESCHHH-HHTCTTCCEEEE
T ss_pred ceEEEEEechHHHHHHHHHHHhCCC------cEE-EEEEcCCHHHHHHH---HHHcCCCcccCCHHH-HhcCCCCCEEEE
Confidence 358999998743 3555554431 011 12333344322222 1334565 8999999 444344555555
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
++++....+-+.+++ ++|. .++|--. ....+..++|.++|+++|+.+
T Consensus 74 ~tp~~~h~~~~~~al-~aGk-~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~ 121 (329)
T 3evn_A 74 ATINQDHYKVAKAAL-LAGK-HVLVEKPFTLTYDQANELFALAESCNLFL 121 (329)
T ss_dssp CSCGGGHHHHHHHHH-HTTC-EEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCcHHHHHHHHHHH-HCCC-eEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence 555555555555444 4774 4554322 455578889999999999765
No 71
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=92.47 E-value=0.5 Score=50.38 Aligned_cols=115 Identities=10% Similarity=-0.014 Sum_probs=63.5
Q ss_pred CceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhc-------cC
Q psy16953 202 QTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMS-------KN 269 (806)
Q Consensus 202 ~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip-------~~ 269 (806)
.-++.|+|.++. -++.+.+.+. .+.+ |+=.++.. ..+ .+.. +.++|.+.++.+. ..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~-------~lva-v~d~~~~~-~~~---~~~~~~~~~~~~~~~ll~~~~~l~~~~ 70 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGG-------VLVA-SLDPATNV-GLV---DSFFPEAEFFTEPEAFEAYLEDLRDRG 70 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTC-------EEEE-EECSSCCC-GGG---GGTCTTCEEESCHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCC-------EEEE-EEcCCHHH-HHH---HhhCCCCceeCCHHHHHHHhhhhcccC
Confidence 358999999543 2555555442 1122 33333321 000 1122 3789999999431 34
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
+|+++++|+.|+....+-+++++. +|. .++|==. ....+..++|.++|+++|+.+ +|-|
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~ 131 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALR-LGA-NALSEKPLVLWPEEIARLKELEARTGRRVYTVLQ 131 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHH-TTC-EEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCG
T ss_pred CCCcEEEECCCchhhHHHHHHHHH-CCC-eEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEee
Confidence 455555555555555555555554 784 4443111 344578889999999999865 4444
No 72
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=92.41 E-value=0.11 Score=58.21 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=53.0
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+..|++|.+|+. |++ +..+ .++.+++.+....++ .++||||+...+++| |.+..|.+|+++++++.
T Consensus 124 K~~~k~~l~~~GI--p~p-~~~~-----~~~~~ea~~~~~~~g-~PvVvKp~~~~gg~G----V~iv~~~eel~~a~~~~ 190 (442)
T 3lp8_A 124 KGFTKELCMRYGI--PTA-KYGY-----FVDTNSAYKFIDKHK-LPLVVKADGLAQGKG----TVICHTHEEAYNAVDAM 190 (442)
T ss_dssp HHHHHHHHHHHTC--CBC-CEEE-----ESSHHHHHHHHHHSC-SSEEEEESSCCTTTS----EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CEEE-----ECCHHHHHHHHHHcC-CcEEEeECCCCCCCe----EEEeCCHHHHHHHHHHH
Confidence 4567899999988 766 5554 568888877666665 699999997776553 56667899999999988
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
+.
T Consensus 191 ~~ 192 (442)
T 3lp8_A 191 LV 192 (442)
T ss_dssp HT
T ss_pred Hh
Confidence 73
No 73
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=92.16 E-value=0.19 Score=56.22 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=75.5
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCCC-HHH----HHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGTT-FMD----HILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~-~~D----~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
..|+|+.+.-.++++...+|.+...|- -...|..+|+. +... +.+ .++-+..||++|+|++-+ .||+.+
T Consensus 271 ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~--a~~e~v~~~~~~~l~ii~~d~~vk~i~vnI-fGGI~~c 347 (425)
T 3mwd_A 271 PKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGA--PSEQQTYDYAKTILSLMTREKHPDGKILII-GGSIANF 347 (425)
T ss_dssp TTCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESC--CCHHHHHHHHHHHHHHTTSSCCTTCEEEEE-CBCBCSS
T ss_pred cCCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCC--CCHHHHHHHHHHHHHHHhcCCCCCEEEEEe-cCCcccH
Confidence 369999999999999999999999987 47999999998 4432 333 478888999999999977 688865
Q ss_pred HH-------HHHHHHhc-----CCCCCEEEEEeCcCcC
Q psy16953 431 YE-------VCAALKDK-----RITKPLVAWCIGTCAS 456 (806)
Q Consensus 431 ~~-------f~~a~r~~-----~~~KPVV~lk~Grs~~ 456 (806)
.. +.+++++. ..++|||+-..|++..
T Consensus 348 d~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~ 385 (425)
T 3mwd_A 348 TNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQ 385 (425)
T ss_dssp SCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHH
T ss_pred HHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHH
Confidence 22 45677764 4689999887777664
No 74
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=91.81 E-value=0.26 Score=53.24 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=63.1
Q ss_pred CceEEEEccChh---HHHhhhhc-ccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
..+|.|+|.+.. .++++.+. ++ .+ -.|+-.++...+++ .+..+++.|.++++++. .+|+++++|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~-------~l-vav~d~~~~~~~~~---~~~~g~~~~~~~~~~l~-~~~~D~V~i 72 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKL-------KL-VTCYSRTEDKREKF---GKRYNCAGDATMEALLA-REDVEMVII 72 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSE-------EE-EEEECSSHHHHHHH---HHHHTCCCCSSHHHHHH-CSSCCEEEE
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCc-------EE-EEEECCCHHHHHHH---HHHcCCCCcCCHHHHhc-CCCCCEEEE
Confidence 458999998743 25555544 32 11 11333333211111 02235788999999553 334444444
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++....+.+++++. +|. .++|--. ....+..++|.+.|+++|+.+
T Consensus 73 ~tp~~~h~~~~~~al~-~gk-~vl~EKP~~~~~~~~~~l~~~a~~~~~~~ 120 (354)
T 3db2_A 73 TVPNDKHAEVIEQCAR-SGK-HIYVEKPISVSLDHAQRIDQVIKETGVKF 120 (354)
T ss_dssp CSCTTSHHHHHHHHHH-TTC-EEEEESSSCSSHHHHHHHHHHHHHHCCCE
T ss_pred eCChHHHHHHHHHHHH-cCC-EEEEccCCCCCHHHHHHHHHHHHHcCCeE
Confidence 5555555555555554 774 4555433 566678899999999999755
No 75
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=91.72 E-value=0.076 Score=59.22 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=66.0
Q ss_pred cccccccccceecccccccc--ccccCCCCccccccCCCCHHHHHHHHHhcCCCChHHHHHHHHHhhhccCCCCCCcccc
Q psy16953 537 LGLIRKPASFMTSICDERGQ--ELLYAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAH 614 (806)
Q Consensus 537 ~g~~r~~~~~~t~i~d~~~~--~i~~~G~~i~~~i~~~~s~~~~~~~ll~g~~~~~~~~~~l~~~Lvl~ADHg~~~St~~ 614 (806)
-| ++.-....|.|+...++ .+.||||+|.|+.. +.+|-+++++||+|..|+.++.+-++..|.-+. .-+....
T Consensus 24 ~G-l~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~-~~~fEeva~LLl~G~lPt~~el~~f~~~l~~~~---~lp~~~~ 98 (409)
T 2ibp_A 24 HG-LEDVLIKSTSISDIDGEKGILWYRGYRIEELAR-LSTYEEVSYLILYGRLPTKRELEDYINRMKKYR---ELHPATV 98 (409)
T ss_dssp GG-GTTCEEEEECSEEEETTTTEEEETTEEHHHHHH-HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT---SCCHHHH
T ss_pred CC-cCCCeeeeeeCeEEECCCCEEEEcCccHHHHHc-cCCHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc---CCCHHHH
Confidence 46 45666778888887764 69999999999876 579999999999999999988888887775442 2222211
Q ss_pred eeeeeeccC-CChHHHHHHhhcccc
Q psy16953 615 NTIVCARAG-KDLVSSLVSGLLTIG 638 (806)
Q Consensus 615 aarv~aSa~-adl~~avaagl~alG 638 (806)
. +..+-. .++-..+.+++++++
T Consensus 99 ~--~~~~~p~~hPM~~l~~~v~aL~ 121 (409)
T 2ibp_A 99 E--VIRNLAKAHPMFALEAAVAAEG 121 (409)
T ss_dssp H--HHHHTTTSCHHHHHHHHHHHHH
T ss_pred H--HHHhCCccCchHHHHHHHHHHh
Confidence 1 111111 167777777777773
No 76
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=91.62 E-value=0.76 Score=48.66 Aligned_cols=113 Identities=7% Similarity=0.033 Sum_probs=62.8
Q ss_pred CCceEEEEccCh---hHHHhhhhc-ccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhc-cCCCeeEE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMS-KNKDADVL 275 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip-~~~Dlavi 275 (806)
+.-+|.|+|.+. ..++.+.+. ++ .+ -.++-.++...+++ . +. +++|.+.++++. ..+|++++
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~-------~~-v~v~d~~~~~~~~~--~-~~--~~~~~~~~~~l~~~~~D~V~i 75 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGA-------AL-VRLASSNPDNLALV--P-PG--CVIESDWRSVVSAPEVEAVII 75 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTE-------EE-EEEEESCHHHHTTC--C-TT--CEEESSTHHHHTCTTCCEEEE
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCc-------EE-EEEEeCCHHHHHHH--H-hh--CcccCCHHHHhhCCCCCEEEE
Confidence 456899999763 235666554 22 01 11333333211111 1 11 578999999543 24555444
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEE-cCCCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAII-AEGIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~vii-s~Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
++ |.....+.+.+|.++|. .+++- .-....+..++|.++|+++|+.+ +|.+
T Consensus 76 --~t-p~~~h~~~~~~al~~Gk-~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~ 128 (315)
T 3c1a_A 76 --AT-PPATHAEITLAAIASGK-AVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHT 128 (315)
T ss_dssp --ES-CGGGHHHHHHHHHHTTC-EEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECG
T ss_pred --eC-ChHHHHHHHHHHHHCCC-cEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 55 44444455555544774 45554 23455678889999999999764 4444
No 77
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=91.21 E-value=0.32 Score=58.39 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=49.8
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhcc-ccccCCCeEEccCccccccCccCceeec----CCHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNE-PWLESSKLVAKPDQLIKRRGKLGLIKVN----TDFKGAQSW 83 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~~VvKpd~l~~~RGK~Glv~l~----~~~~e~~~~ 83 (806)
..+|++|.+++. |++ +..+ .++.+++.+.. ..++ .++||||...-+++ +|.+. .|.+|+++.
T Consensus 491 ~~tk~lL~~~GI--PvP-~~~~-----~~~~~ea~~~~~~~~g-~PvVVKP~~g~~G~----GV~iv~~~v~~~eel~~a 557 (757)
T 3ln7_A 491 VVTKKVLQKAGF--NVP-QSVE-----FTSLEKAVASYALFEN-RAVVIKPKSTNYGL----GITIFQQGVQNREDFAKA 557 (757)
T ss_dssp HHHHHHHHHHTC--CCC-CEEE-----ESCHHHHHHGGGGSSS-SCEEEEESSCSTTT----TCEECSSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCc--CCC-CEEE-----ECCHHHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEecCCCCCHHHHHHH
Confidence 457999999998 877 6555 57888886665 5665 69999999876644 35554 789999988
Q ss_pred HHHH
Q psy16953 84 ISER 87 (806)
Q Consensus 84 ~~~~ 87 (806)
++..
T Consensus 558 l~~a 561 (757)
T 3ln7_A 558 LEIA 561 (757)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 78
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=91.19 E-value=0.74 Score=49.88 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=48.5
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE-ccC
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII-GPA 330 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii-GPN 330 (806)
+.++|.++++ +-+.+|+++++|+.++....+-+++++. +|. .++|--. ....+..++|.++|+++|+.+. |.|
T Consensus 50 ~~~~~~~~~~-ll~~~~vD~V~i~tp~~~H~~~~~~al~-aGk-hVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~ 124 (362)
T 3fhl_A 50 QASIVRSFKE-LTEDPEIDLIVVNTPDNTHYEYAGMALE-AGK-NVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQN 124 (362)
T ss_dssp TSEEESCSHH-HHTCTTCCEEEECSCGGGHHHHHHHHHH-TTC-EEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECG
T ss_pred CCceECCHHH-HhcCCCCCEEEEeCChHHHHHHHHHHHH-CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 4789999999 5555555555556655555555555555 774 4555322 4555788899999999998663 443
No 79
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=91.18 E-value=0.23 Score=54.92 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=52.2
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+++ +|.+..|.+|+++++++
T Consensus 106 dK~~~k~~l~~~gi--p~p-~~~~-----~~~~~e~~~~~~~~g-~PvvvKp~~~~gg~----Gv~~v~~~~el~~a~~~ 172 (412)
T 1vkz_A 106 SKVYAKRFMKKYGI--RTA-RFEV-----AETPEELREKIKKFS-PPYVIKADGLARGK----GVLILDSKEETIEKGSK 172 (412)
T ss_dssp CHHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHTTSC-SSEEEEESSCCSSC----CEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-CEEE-----ECCHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 34667899999988 766 4444 567888877666665 69999999987665 36777899999988876
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 173 ~~ 174 (412)
T 1vkz_A 173 LI 174 (412)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 80
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=91.18 E-value=0.31 Score=53.40 Aligned_cols=74 Identities=12% Similarity=0.253 Sum_probs=47.6
Q ss_pred ecccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.++++|.|+++.+.. +|+++++|+.++....+-+++++. +|. .++|--. ....+..++|.++|+++|+.+ +|.|
T Consensus 48 ~g~~~~~~~~ell~~-~~vD~V~i~tp~~~H~~~~~~al~-aGk-~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~ 123 (387)
T 3moi_A 48 YGIPVFATLAEMMQH-VQMDAVYIASPHQFHCEHVVQASE-QGL-HIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTS 123 (387)
T ss_dssp HTCCEESSHHHHHHH-SCCSEEEECSCGGGHHHHHHHHHH-TTC-EEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCC
T ss_pred cCCCeECCHHHHHcC-CCCCEEEEcCCcHHHHHHHHHHHH-CCC-ceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEec
Confidence 368899999995543 344445556655555555555555 774 4554222 445578889999999999765 4443
No 81
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=90.83 E-value=0.77 Score=49.02 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=62.8
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~~~Dlavivi 277 (806)
-+|.|+|.+... ++.+...++ .+ -.|+-.++...+++ .+.. +.++|.+.++. -+.+|+++++|
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~-------~l-vav~d~~~~~~~~~---a~~~~~~~~~~~~~~l-l~~~~~D~V~i 72 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGA-------EL-AGVFESDSDNRAKF---TSLFPSVPFAASAEQL-ITDASIDLIAC 72 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTC-------EE-EEEECSCTTSCHHH---HHHSTTCCBCSCHHHH-HTCTTCCEEEE
T ss_pred cEEEEECCChHHHHHhhhhhcCCCc-------EE-EEEeCCCHHHHHHH---HHhcCCCcccCCHHHH-hhCCCCCEEEE
Confidence 489999986432 333433333 11 12333444321111 1223 36899999994 44444555555
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~girii 327 (806)
+.++....+.+++++. +|. .++|-- -....++.++|.+.|+++|+.+.
T Consensus 73 ~tp~~~h~~~~~~al~-aGk-hVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 73 AVIPCDRAELALRTLD-AGK-DFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp CSCGGGHHHHHHHHHH-TTC-EEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred eCChhhHHHHHHHHHH-CCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 6655555565665555 774 455421 13445778899999999998664
No 82
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=90.82 E-value=0.67 Score=50.24 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=45.5
Q ss_pred ecccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
.++++|.|+++.+ +.+|+++++|+.++....+.+++++. +|. .++|--. ....+..++|.++|+++|+.+
T Consensus 49 ~g~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~-aGk-hVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (359)
T 3e18_A 49 KGLKIYESYEAVL-ADEKVDAVLIATPNDSHKELAISALE-AGK-HVVCEKPVTMTSEDLLAIMDVAKRVNKHF 119 (359)
T ss_dssp TTCCBCSCHHHHH-HCTTCCEEEECSCGGGHHHHHHHHHH-TTC-EEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred cCCceeCCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHH-CCC-CEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 3578999999954 43444455555555555555555554 774 4554322 445578889999999999765
No 83
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=90.73 E-value=1.1 Score=47.85 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=64.5
Q ss_pred CceEEEEccChh----HHHhhhhcccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhc--------c
Q psy16953 202 QTKAIVWGMQTR----AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMS--------K 268 (806)
Q Consensus 202 ~t~v~V~G~~~r----~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip--------~ 268 (806)
.-++.|+|.++. -++.+.+.+. .+. .++=.++.. .++ .... +.++|.+.++.+. .
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~-------~lv-av~d~~~~~-~~~---~~~~~~~~~~~~~~~ll~~~~~l~~~~ 70 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGN-------CLV-SAYDINDSV-GII---DSISPQSEFFTEFEFFLDHASNLKRDS 70 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTC-------EEE-EEECSSCCC-GGG---GGTCTTCEEESSHHHHHHHHHHHTTST
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCC-------EEE-EEEcCCHHH-HHH---HhhCCCCcEECCHHHHHHhhhhhhhcc
Confidence 458999999543 2555555443 112 233333321 111 1222 3788999999441 2
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.+|+++++|+.|+....+-+++++. +|.. ++|==. ....+..++|.++|+++|+.+ +|.+
T Consensus 71 ~~~vD~V~I~tP~~~H~~~~~~al~-aGkh-Vl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~ 132 (318)
T 3oa2_A 71 ATALDYVSICSPNYLHYPHIAAGLR-LGCD-VICEKPLVPTPEMLDQLAVIERETDKRLYNILQ 132 (318)
T ss_dssp TTSCCEEEECSCGGGHHHHHHHHHH-TTCE-EEECSSCCSCHHHHHHHHHHHHHHTCCEEECCG
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHH-CCCe-EEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEh
Confidence 3455555556655555555555555 7844 443211 445578899999999999865 4544
No 84
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=90.57 E-value=1 Score=48.48 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=46.4
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++|.++++. -+.+|+++++|+.++....+-+++++. +| |.++|=-. ....+..++|.++|+++|+.+
T Consensus 52 ~~~~~~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~-aG-khV~~EKPla~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 52 AIPVVSDPQML-FNDPSIDLIVIPTPNDTHFPLAQSALA-AG-KHVVVDKPFTVTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp SCCEESCHHHH-HHCSSCCEEEECSCTTTHHHHHHHHHH-TT-CEEEECSSCCSCHHHHHHHHHHHHHTTCCE
T ss_pred CCceECCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHH-CC-CcEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence 47899999994 444455555556655555555555555 77 45555322 455578889999999999765
No 85
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=90.57 E-value=0.64 Score=50.73 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=69.3
Q ss_pred CCCCceEEEEccC------hhHHHhhhhc--ccccccCCCcccceeEeecCCCcccc--cccceeecccccccHHHHhcc
Q psy16953 199 GQEQTKAIVWGMQ------TRAVQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKLKF--YWGHKEVLIPVYKKMEDAMSK 268 (806)
Q Consensus 199 ~~~~t~v~V~G~~------~r~~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~~~--~~g~~~i~~p~y~sv~daip~ 268 (806)
+..+++++||+.+ .+....++++ +| .+.|-| += ..++.. ..+....++|++.|+++|+..
T Consensus 19 ~~~~~~~vi~~~g~~g~~~aKta~gllr~~~~~-------~iVgvi-~~--~~Gkd~ge~~~g~~~gipv~~d~~~al~~ 88 (350)
T 2g0t_A 19 YQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLF-------KPVCVV-AE--HEGKMASDFVKPVRYDVPVVSSVEKAKEM 88 (350)
T ss_dssp SCTTEEEEEECTTTTTSGGGHHHHHHHHHCSSE-------EEEEEE-SS--CTTCBGGGTCC-CCSCCBEESSHHHHHHT
T ss_pred hCcCCCEEEEeCCCCChHHHHHHHHHHhhCCCC-------eEEEEe-ec--CCCCcHHHhhCCCCCCceeeCCHHHHHhc
Confidence 5678899999854 2335577777 34 346666 22 222111 110112359999999999877
Q ss_pred CCCeeEEEeec----CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 269 NKDADVLVNFA----SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 269 ~~Dlavivi~~----~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
.+|..++-+.- .+....+.+.+++. +|.. +|... .....+..+|.++|+++|+.+++=
T Consensus 89 ~~d~lvig~a~~gg~l~~~~~~~I~~Al~-~G~n-Vvsgl-h~~l~~~pel~~~A~~~Gv~i~dv 150 (350)
T 2g0t_A 89 GAEVLIIGVSNPGGYLEEQIATLVKKALS-LGMD-VISGL-HFKISQQTEFLKIAHENGTRIIDI 150 (350)
T ss_dssp TCCEEEECCCSCCHHHHHHHHHHHHHHHH-TTCE-EEECC-CC--CCHHHHHHHHHHHTCCEEES
T ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHHH-cCCc-EEeCC-hhhhhCCHHHHHHHHHCCCEEEEe
Confidence 78887762110 11233344555554 8876 33222 223455667899999999999875
No 86
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=90.55 E-value=1.2 Score=47.94 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=48.3
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
+.++|.|+++ +-+.+|+++++|+.++....+-+++++. +| +.++|--. ....+..++|.+.|+++|+.+.
T Consensus 50 ~~~~~~~~~~-ll~~~~~D~V~i~tp~~~h~~~~~~al~-aG-k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 50 HIHFTSDLDE-VLNDPDVKLVVVCTHADSHFEYAKRALE-AG-KNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp TCEEESCTHH-HHTCTTEEEEEECSCGGGHHHHHHHHHH-TT-CEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred CCceECCHHH-HhcCCCCCEEEEcCChHHHHHHHHHHHH-cC-CcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4789999999 5555677777777666655565555555 77 44444211 4455788899999999998663
No 87
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=90.54 E-value=0.52 Score=50.86 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=46.6
Q ss_pred ecc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE
Q psy16953 254 VLI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 254 i~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri 326 (806)
.++ ++|.+.++.+. .+|+++++|+.|+....+-+++++. +|.. |+.+ ....++.++|+++|+++|+.+
T Consensus 77 ~g~~~~y~d~~ell~-~~~iDaV~IatP~~~H~~~a~~al~-aGkh---Vl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 77 FGFEKATADWRALIA-DPEVDVVSVTTPNQFHAEMAIAALE-AGKH---VWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp HTCSEEESCHHHHHH-CTTCCEEEECSCGGGHHHHHHHHHH-TTCE---EEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred hCCCeecCCHHHHhc-CCCCcEEEECCChHHHHHHHHHHHh-cCCe---EEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 354 48999999544 4455555566666666676776666 7754 3444 344478889999999999754
No 88
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=90.44 E-value=0.35 Score=52.22 Aligned_cols=115 Identities=7% Similarity=-0.045 Sum_probs=64.9
Q ss_pred CCceEEEEccCh---hHHHhhhhc--ccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc-CCCeeE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK-NKDADV 274 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~-~~Dlav 274 (806)
+..+|.|+|.+. ..++.+.+. ++ .+ -.|+-.++..-+++ .+..++++|.++++.+.. .+|+++
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~-------~l-vav~d~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~D~V~ 80 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRA-------EL-IDVCDIDPAALKAA---VERTGARGHASLTDMLAQTDADIVI 80 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTE-------EE-EEEECSSHHHHHHH---HHHHCCEEESCHHHHHHHCCCSEEE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCe-------EE-EEEEcCCHHHHHHH---HHHcCCceeCCHHHHhcCCCCCEEE
Confidence 456899999874 235666654 33 00 11222232211111 012357899999995543 455554
Q ss_pred EEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 275 LVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
| ++++....+.+++++. +| +.+++--. ....+..++|.++|+++|+.+ +|.+
T Consensus 81 i--~tp~~~h~~~~~~al~-~g-k~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~ 134 (354)
T 3q2i_A 81 L--TTPSGLHPTQSIECSE-AG-FHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQ 134 (354)
T ss_dssp E--CSCGGGHHHHHHHHHH-TT-CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred E--CCCcHHHHHHHHHHHH-CC-CCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 4 5555544454554444 77 44554222 455678889999999999766 4544
No 89
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=90.17 E-value=0.86 Score=48.88 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=44.2
Q ss_pred ccc-ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIP-VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p-~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+++ +|.++++.+. .+|+++++|++++....+.+++++ ++|. .++|--. ....+..++|.++|+++|+.+
T Consensus 48 ~~~~~~~~~~~ll~-~~~~D~V~i~tp~~~h~~~~~~al-~~gk-~v~~EKP~~~~~~e~~~l~~~a~~~g~~~ 118 (344)
T 3ezy_A 48 GVEKAYKDPHELIE-DPNVDAVLVCSSTNTHSELVIACA-KAKK-HVFCEKPLSLNLADVDRMIEETKKADVIL 118 (344)
T ss_dssp TCSEEESSHHHHHH-CTTCCEEEECSCGGGHHHHHHHHH-HTTC-EEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred CCCceeCCHHHHhc-CCCCCEEEEcCCCcchHHHHHHHH-hcCC-eEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence 444 8999999544 334444444555554445455444 4774 4555433 566678899999999999754
No 90
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=90.05 E-value=0.41 Score=48.59 Aligned_cols=97 Identities=14% Similarity=0.295 Sum_probs=59.6
Q ss_pred CCCCceEEEEccChhHHHhhhhc-ccccccCCCcccceeEeecCC-Ccccccccceee-cccccccHHHHhcc-----CC
Q psy16953 199 GQEQTKAIVWGMQTRAVQSMLDF-DFVCRRSEPSVAAMVYPFTGD-HKLKFYWGHKEV-LIPVYKKMEDAMSK-----NK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~~~~ll~~-gf~~~~~~~~~~g~iypvnp~-~~~~~~~g~~~i-~~p~y~sv~daip~-----~~ 270 (806)
.++..+++|+|++. ..+.++.+ .+ ...+-.+.| ++=.+|+ . +|.+.+ |+|+|+ +++ +++ .+
T Consensus 81 ~~~~~~V~IvGaG~-lG~aLa~~~~~--~~~g~~iVg-~~D~dp~~k-----iG~~~i~GvpV~~-~~d-L~~~v~~~~I 149 (212)
T 3keo_A 81 DHSTTNVMLVGCGN-IGRALLHYRFH--DRNKMQISM-AFDLDSNDL-----VGKTTEDGIPVYG-IST-INDHLIDSDI 149 (212)
T ss_dssp TTSCEEEEEECCSH-HHHHHTTCCCC--TTSSEEEEE-EEECTTSTT-----TTCBCTTCCBEEE-GGG-HHHHC-CCSC
T ss_pred CCCCCEEEEECcCH-HHHHHHHhhhc--ccCCeEEEE-EEeCCchhc-----cCceeECCeEEeC-HHH-HHHHHHHcCC
Confidence 45778999999974 33333333 11 001112233 3344654 2 343145 588885 555 443 46
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCH
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPE 309 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E 309 (806)
|.+++ +.|.....++.+.|.+.||++++-||. -+|+
T Consensus 150 d~vII---AvPs~~aq~v~d~lv~~GIk~I~nFap~~l~vp~ 188 (212)
T 3keo_A 150 ETAIL---TVPSTEAQEVADILVKAGIKGILSFSPVHLTLPK 188 (212)
T ss_dssp CEEEE---CSCGGGHHHHHHHHHHHTCCEEEECSSSCCCCCT
T ss_pred CEEEE---ecCchhHHHHHHHHHHcCCCEEEEcCCcccCCCC
Confidence 66666 667777889999999999999999986 3455
No 91
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=90.04 E-value=0.26 Score=53.41 Aligned_cols=68 Identities=6% Similarity=-0.161 Sum_probs=49.7
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
..+..|++|.+++. |++ +... .++.+++.+....++ .++||||+..- +++ +|.+..|.+|++++++
T Consensus 96 dK~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~~~ 162 (369)
T 3aw8_A 96 DRLREKTFFQGLGV--PTP-PFHP-----VDGPEDLEEGLKRVG-LPALLKTRRGGYDGK----GQALVRTEEEALEALK 162 (369)
T ss_dssp CHHHHHHHHHHHTC--CCC-CEEE-----ESSHHHHHHHHTTTC-SSEEEEECCC----------EEEECSHHHHHHHHT
T ss_pred CHHHHHHHHHHCCC--CCC-Ccee-----eCCHHHHHHHHHHcC-CCEEEEEcCCCCCcc----eEEEECCHHHHHHHHH
Confidence 45778999999988 766 5444 567888877666666 69999999876 655 4777789999999887
Q ss_pred HH
Q psy16953 86 ER 87 (806)
Q Consensus 86 ~~ 87 (806)
+.
T Consensus 163 ~~ 164 (369)
T 3aw8_A 163 AL 164 (369)
T ss_dssp TT
T ss_pred hc
Confidence 65
No 92
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=89.84 E-value=0.65 Score=50.16 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=63.9
Q ss_pred CCceEEEEccChh----HHHhhhhc-ccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEE
Q psy16953 201 EQTKAIVWGMQTR----AVQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVL 275 (806)
Q Consensus 201 ~~t~v~V~G~~~r----~~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavi 275 (806)
+.-++.|+|.+.. .++.+.+. ++ .+. .|+-.++...+++ .+..+++.|.++++.+ +.+|++++
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~-------~l~-av~d~~~~~~~~~---a~~~g~~~~~~~~~ll-~~~~~D~V 93 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLT-------EVT-AIASRRWDRAKRF---TERFGGEPVEGYPALL-ERDDVDAV 93 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTE-------EEE-EEEESSHHHHHHH---HHHHCSEEEESHHHHH-TCTTCSEE
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCe-------EEE-EEEcCCHHHHHHH---HHHcCCCCcCCHHHHh-cCCCCCEE
Confidence 4468999998743 24555554 22 111 1222233211111 1233688999999954 43444555
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
+|+.++....+.+.+++ ++|.. ++|--. ....++.++|.++|+++|+.+.
T Consensus 94 ~i~tp~~~h~~~~~~al-~aGk~-Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 94 YVPLPAVLHAEWIDRAL-RAGKH-VLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp EECCCGGGHHHHHHHHH-HTTCE-EEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCcHHHHHHHHHHH-HCCCc-EEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 55555555555555444 47754 444222 4556788999999999997653
No 93
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=89.80 E-value=0.37 Score=53.07 Aligned_cols=112 Identities=11% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCceEEEEccCh------hHHHhhhhcc-cccccCCCcccceeEeecCCCcccccccceeecc---cccccHHHHhcc--
Q psy16953 201 EQTKAIVWGMQT------RAVQSMLDFD-FVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI---PVYKKMEDAMSK-- 268 (806)
Q Consensus 201 ~~t~v~V~G~~~------r~~~~ll~~g-f~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~---p~y~sv~daip~-- 268 (806)
+.-+|.|+|.+. .-+..+...+ + .+.+.|+=.++...+++ .+..++ ++|.|+++.+..
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~-------~lva~v~d~~~~~a~~~---a~~~g~~~~~~~~~~~~ll~~~~ 80 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTF-------VLVAGAFDIDPIRGSAF---GEQLGVDSERCYADYLSMFEQEA 80 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSE-------EEEEEECCSSHHHHHHH---HHHTTCCGGGBCSSHHHHHHHHT
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCe-------EEEEEEeCCCHHHHHHH---HHHhCCCcceeeCCHHHHHhccc
Confidence 345899999886 2234444333 2 12222333343221111 123355 699999996553
Q ss_pred --CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE
Q psy16953 269 --NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 269 --~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri 326 (806)
.+|+++++|+.++....+-+++++. +|. .++| + ....+..++|.++|+++|+.+
T Consensus 81 ~~~~~vD~V~i~tp~~~H~~~~~~al~-aGk-hVl~--EKPla~~~~ea~~l~~~a~~~g~~~ 139 (398)
T 3dty_A 81 RRADGIQAVSIATPNGTHYSITKAALE-AGL-HVVC--EKPLCFTVEQAENLRELSHKHNRIV 139 (398)
T ss_dssp TCTTCCSEEEEESCGGGHHHHHHHHHH-TTC-EEEE--CSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCCCEEEECCCcHHHHHHHHHHHH-CCC-eEEE--eCCCcCCHHHHHHHHHHHHHcCCeE
Confidence 1344444445555555555555555 775 4444 4 345578889999999999765
No 94
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=89.65 E-value=1.1 Score=48.52 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=46.3
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++|.++++. -+.+|+++++|+.++....+-+++++. +| |.++|--. ....+..++|.++|+++|+.+
T Consensus 50 ~~~~~~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~-aG-khVl~EKPla~~~~e~~~l~~~a~~~g~~~ 119 (358)
T 3gdo_A 50 DAEVVHELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQ-AG-KHVVMEKPMTATAEEGETLKRAADEKGVLL 119 (358)
T ss_dssp TSEEESSTHHH-HTCTTCCEEEECSCTTTHHHHHHHHHH-TT-CEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CCceECCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHH-cC-CeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence 47899999994 444455555556655555555555555 77 45555322 445577889999999999765
No 95
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=89.63 E-value=2.3 Score=44.72 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=48.0
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
+++ |.|+++ +-+.+|+++++|+.++....+.+++++. +|. .++|--. ....+..++|.++|+++|+.+ +|++
T Consensus 51 g~~-~~~~~e-ll~~~~vD~V~i~tp~~~H~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~ 124 (294)
T 1lc0_A 51 EVR-QISLED-ALRSQEIDVAYICSESSSHEDYIRQFLQ-AGK-HVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHV 124 (294)
T ss_dssp TEE-BCCHHH-HHHCSSEEEEEECSCGGGHHHHHHHHHH-TTC-EEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECG
T ss_pred CCC-CCCHHH-HhcCCCCCEEEEeCCcHhHHHHHHHHHH-CCC-cEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEh
Confidence 455 689999 5555667777777766666666666665 775 4555321 334477899999999999764 4544
No 96
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=89.37 E-value=0.6 Score=51.41 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=50.7
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+++| |.+..|.+|+++++++
T Consensus 101 dK~~~~~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~-~P~vvKp~~~~gg~G----v~~v~~~~el~~~~~~ 167 (417)
T 2ip4_A 101 SKAFAKGLMERYGI--PTA-RYRV-----FREPLEALAYLEEVG-VPVVVKDSGLAAGKG----VTVAFDLHQAKQAVAN 167 (417)
T ss_dssp CHHHHHHHHHHTCC--CBC-CEEE-----ESSHHHHHHHHHHHC-SSEEEECTTSCSSTT----CEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-Ceee-----eCCHHHHHHHHHHcC-CCEEEEECCCCCCCC----EEEeCCHHHHHHHHHH
Confidence 34567888999887 666 4444 467777766544455 599999998766543 6677799999999988
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 168 ~~ 169 (417)
T 2ip4_A 168 IL 169 (417)
T ss_dssp HT
T ss_pred HH
Confidence 76
No 97
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=89.35 E-value=0.72 Score=49.14 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=44.0
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
+++ |.++++++ +.+|++++++++++....+.+. +|.++| +.+++--. ....+..++|.+.|+++|+.+.
T Consensus 49 ~~~-~~~~~~~l-~~~~~D~V~i~tp~~~h~~~~~-~al~~g-k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 49 GCE-VRTIDAIE-AAADIDAVVICTPTDTHADLIE-RFARAG-KAIFCEKPIDLDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp TCE-ECCHHHHH-HCTTCCEEEECSCGGGHHHHHH-HHHHTT-CEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred CCC-cCCHHHHh-cCCCCCEEEEeCCchhHHHHHH-HHHHcC-CcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 567 99999954 4334444544555555555444 444477 44554322 5566788899999999997653
No 98
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=89.26 E-value=1.2 Score=48.22 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=45.2
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++|.++++. -+.+|+++++|+.++....+-+++++. +|. .++|--. ....+..++|.++|+++|+.+
T Consensus 52 ~~~~~~~~~~l-l~~~~~D~V~i~tp~~~H~~~~~~al~-aGk-~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 121 (364)
T 3e82_A 52 DVTVIASPEAA-VQHPDVDLVVIASPNATHAPLARLALN-AGK-HVVVDKPFTLDMQEARELIALAEEKQRLL 121 (364)
T ss_dssp TSEEESCHHHH-HTCTTCSEEEECSCGGGHHHHHHHHHH-TTC-EEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCcEECCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHH-CCC-cEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 37899999994 443445555556555555555555555 774 4544222 445578889999999999766
No 99
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=89.06 E-value=0.59 Score=52.25 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=43.5
Q ss_pred ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCC-----CEEEEEc-CCCCHHHHHHHHHHHHHcCCeE
Q psy16953 258 VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQI-----RSIAIIA-EGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 258 ~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gv-----k~~viis-~Gf~E~~~~~l~~~a~~~giri 326 (806)
+|.++++. -+.+|+++++|+.++....+.+++++. +|. |.++|-- -....+..++|.++|+++|+.+
T Consensus 77 ~~~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~-aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 149 (438)
T 3btv_A 77 AFPTLESF-ASSSTIDMIVIAIQVASHYEVVMPLLE-FSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT 149 (438)
T ss_dssp EESSHHHH-HHCSSCSEEEECSCHHHHHHHHHHHHH-HGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred eeCCHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHH-CCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence 89999994 443344444445555555555555554 673 6676642 2445578899999999999764
No 100
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=88.86 E-value=1.3 Score=46.89 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=44.3
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEE-cCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAII-AEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~vii-s~Gf~E~~~~~l~~~a~~~girii 327 (806)
++++|.+.++ +...+|++++ ++++....+.++ +|.++|. .+++- .-....++.++|.+.|+++|+.+.
T Consensus 52 g~~~~~~~~~-l~~~~D~V~i--~tp~~~h~~~~~-~al~~G~-~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (319)
T 1tlt_A 52 RIPYADSLSS-LAASCDAVFV--HSSTASHFDVVS-TLLNAGV-HVCVDKPLAENLRDAERLVELAARKKLTLM 120 (319)
T ss_dssp TCCBCSSHHH-HHTTCSEEEE--CSCTTHHHHHHH-HHHHTTC-EEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred CCCccCcHHH-hhcCCCEEEE--eCCchhHHHHHH-HHHHcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 5678999988 6555665555 554444444444 4444775 45553 234556788899999999997663
No 101
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=88.82 E-value=0.79 Score=49.10 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=44.4
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++|.+++++ -+.+|+++++|++++....+.+. +|.++|.. +++--. ....+..++|.+.|+++|+.+
T Consensus 50 g~~~~~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~-~al~~gk~-v~~EKP~~~~~~~~~~l~~~a~~~g~~~ 119 (344)
T 3euw_A 50 GAEAVASPDEV-FARDDIDGIVIGSPTSTHVDLIT-RAVERGIP-ALCEKPIDLDIEMVRACKEKIGDGASKV 119 (344)
T ss_dssp TCEEESSHHHH-TTCSCCCEEEECSCGGGHHHHHH-HHHHTTCC-EEECSCSCSCHHHHHHHHHHHGGGGGGE
T ss_pred CCceeCCHHHH-hcCCCCCEEEEeCCchhhHHHHH-HHHHcCCc-EEEECCCCCCHHHHHHHHHHHHhcCCeE
Confidence 47899999994 44344444544555554445444 45447854 444332 556678889999999999744
No 102
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=88.77 E-value=0.88 Score=48.80 Aligned_cols=79 Identities=8% Similarity=0.005 Sum_probs=48.0
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
.++|.++++++ +.+|+++++|+.++....+.++ +|.++|. .++|--. ....+..++|.+.|+++|++++..+..--
T Consensus 52 ~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~-~al~~Gk-~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r 128 (344)
T 3mz0_A 52 ATVYPNDDSLL-ADENVDAVLVTSWGPAHESSVL-KAIKAQK-YVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRR 128 (344)
T ss_dssp CEEESSHHHHH-HCTTCCEEEECSCGGGHHHHHH-HHHHTTC-EEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGG
T ss_pred CeeeCCHHHHh-cCCCCCEEEECCCchhHHHHHH-HHHHCCC-cEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccc
Confidence 57899999954 4444455555555554444444 4544774 4554222 45557888999999999987643333223
Q ss_pred ccC
Q psy16953 335 LKP 337 (806)
Q Consensus 335 i~p 337 (806)
++|
T Consensus 129 ~~p 131 (344)
T 3mz0_A 129 YDS 131 (344)
T ss_dssp GSH
T ss_pred cCH
Confidence 344
No 103
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=88.73 E-value=1 Score=47.41 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred ecccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEE-cCCCCHHHHHHHHHHHHHcCCeE
Q psy16953 254 VLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAII-AEGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 254 i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~vii-s~Gf~E~~~~~l~~~a~~~giri 326 (806)
.+++.|.++++.+. .+|+++| ++|.....+.+.+|.++|.. ++|- .-....+..++|.+.|+++|+.+
T Consensus 52 ~~~~~~~~~~~ll~-~~D~V~i---~tp~~~h~~~~~~al~~gk~-vl~EKP~~~~~~~~~~l~~~a~~~g~~~ 120 (308)
T 3uuw_A 52 YRIMPFDSIESLAK-KCDCIFL---HSSTETHYEIIKILLNLGVH-VYVDKPLASTVSQGEELIELSTKKNLNL 120 (308)
T ss_dssp HTCCBCSCHHHHHT-TCSEEEE---CCCGGGHHHHHHHHHHTTCE-EEECSSSSSSHHHHHHHHHHHHHHTCCE
T ss_pred cCCCCcCCHHHHHh-cCCEEEE---eCCcHhHHHHHHHHHHCCCc-EEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 35777999999554 6776665 45555555555555557865 4332 22455678889999999999765
No 104
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=88.66 E-value=1.1 Score=48.53 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=63.7
Q ss_pred CCceEEEEccChh---HHHhhh-hc-ccccccCCCcccceeEeecCCCcccccccceeec--ccccccHHHHhccCCCee
Q psy16953 201 EQTKAIVWGMQTR---AVQSML-DF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVL--IPVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll-~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~--~p~y~sv~daip~~~Dla 273 (806)
..-+|.|+|.+.. .++.+. .. ++ .+ -.|+-.++...+++ .+..+ .++|.++++.+. .+|++
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~-------~l-vav~d~~~~~~~~~---a~~~g~~~~~~~~~~~ll~-~~~~D 89 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGV-------EV-VAVCDIVAGRAQAA---LDKYAIEAKDYNDYHDLIN-DKDVE 89 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTE-------EE-EEEECSSTTHHHHH---HHHHTCCCEEESSHHHHHH-CTTCC
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCc-------EE-EEEEeCCHHHHHHH---HHHhCCCCeeeCCHHHHhc-CCCCC
Confidence 3458999998753 355555 32 22 11 12333344321111 02224 678999999544 33444
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
+++|+.++....+ .+.+|.++|. .++|--. ....+..++|.++|+++|++++
T Consensus 90 ~V~i~tp~~~h~~-~~~~al~aGk-~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 142 (357)
T 3ec7_A 90 VVIITASNEAHAD-VAVAALNANK-YVFCEKPLAVTAADCQRVIEAEQKNGKRMV 142 (357)
T ss_dssp EEEECSCGGGHHH-HHHHHHHTTC-EEEEESSSCSSHHHHHHHHHHHHHHTSCCE
T ss_pred EEEEcCCcHHHHH-HHHHHHHCCC-CEEeecCccCCHHHHHHHHHHHHHhCCeEE
Confidence 4444555544444 4445544884 4555332 4555788899999999998764
No 105
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=88.65 E-value=0.99 Score=48.47 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCceEEEEccChh----HHHhhhhc--ccccccCCCcccceeEeecCCCcccccccceeecc-cccccHHHHhccCCCee
Q psy16953 201 EQTKAIVWGMQTR----AVQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI-PVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 201 ~~t~v~V~G~~~r----~~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~-p~y~sv~daip~~~Dla 273 (806)
..-++.|+|.+.. .++.+... ++ .+. .|+-.++...+++ .+..++ ++|.++++.+.. +|++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~-------~lv-av~d~~~~~~~~~---a~~~~~~~~~~~~~~ll~~-~~vD 84 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLF-------EIT-AVTSRTRSHAEEF---AKMVGNPAVFDSYEELLES-GLVD 84 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTE-------EEE-EEECSSHHHHHHH---HHHHSSCEEESCHHHHHHS-SCCS
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCce-------EEE-EEEcCCHHHHHHH---HHHhCCCcccCCHHHHhcC-CCCC
Confidence 4568999999832 24555443 11 111 2333333211111 022344 789999995543 3444
Q ss_pred EEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 274 VLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 274 vivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+++|+.++....+-+++++. +|. .++|--. ....++.++|.++|+++|+.+
T Consensus 85 ~V~i~tp~~~H~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~g~~~ 136 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALR-KGV-HVICEKPISTDVETGKKVVELSEKSEKTV 136 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHH-TTC-EEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred EEEEeCCchHHHHHHHHHHH-CCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 44445555545555555554 774 5555322 344578889999999999754
No 106
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=88.50 E-value=1.1 Score=47.86 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=43.5
Q ss_pred cc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
++ .+|.+.++.+ +.+|+++++|++++....+.+++ |.++|.. ++|--. ....+..++|.++|+++|+.+
T Consensus 51 ~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~-al~~gk~-vl~EKP~~~~~~e~~~l~~~a~~~g~~~ 121 (330)
T 3e9m_A 51 AIPVAYGSYEELC-KDETIDIIYIPTYNQGHYSAAKL-ALSQGKP-VLLEKPFTLNAAEAEELFAIAQEQGVFL 121 (330)
T ss_dssp TCCCCBSSHHHHH-HCTTCSEEEECCCGGGHHHHHHH-HHHTTCC-EEECSSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCceeCCHHHHh-cCCCCCEEEEcCCCHHHHHHHHH-HHHCCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 45 5899999954 43344444445555555554454 4447854 444222 455578889999999999755
No 107
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=88.23 E-value=1.4 Score=47.12 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=42.6
Q ss_pred cc-cccccHHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHc-CCeEE
Q psy16953 255 LI-PVYKKMEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEK-GVSII 327 (806)
Q Consensus 255 ~~-p~y~sv~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~-girii 327 (806)
+. ++|.++++++.. .+|++++ ++++....+.+++++. +| +.+++-- -....+..++|.++|+++ |+.+.
T Consensus 55 g~~~~~~~~~~~l~~~~~D~V~i--~tp~~~h~~~~~~al~-~G-~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 55 GVETTYTNYKDMIDTENIDAIFI--VAPTPFHPEMTIYAMN-AG-LNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp CCSEEESCHHHHHTTSCCSEEEE--CSCGGGHHHHHHHHHH-TT-CEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred CCCcccCCHHHHhcCCCCCEEEE--eCChHhHHHHHHHHHH-CC-CEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 44 689999995443 3555444 5555545555555544 77 3455421 234456778899999999 87764
No 108
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=88.17 E-value=0.68 Score=49.62 Aligned_cols=110 Identities=9% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEee---cCCCcccccccceeeccc-ccccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPF---TGDHKLKFYWGHKEVLIP-VYKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypv---np~~~~~~~~g~~~i~~p-~y~sv~daip~~~ 270 (806)
++.--|+.|+|.+... +..+.+.. ..+|..| ++...+++ .+..++| +|.|.++.+. .+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~----------~~~lvav~d~~~~~a~~~---a~~~g~~~~y~d~~ell~-~~ 85 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAE----------NCVVTAIASRDLTRAREM---ADRFSVPHAFGSYEEMLA-SD 85 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCS----------SEEEEEEECSSHHHHHHH---HHHHTCSEEESSHHHHHH-CS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCC----------CeEEEEEECCCHHHHHHH---HHHcCCCeeeCCHHHHhc-CC
Confidence 3344589999988532 33343332 1244433 32211111 1233554 8999999554 34
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri 326 (806)
|+++++|+.|+....+-+++++. +|.. ++ .+ ....+..++|+++|+++|+.+
T Consensus 86 ~iDaV~I~tP~~~H~~~~~~al~-aGkh-Vl--~EKPla~~~~ea~~l~~~a~~~~~~l 140 (350)
T 4had_A 86 VIDAVYIPLPTSQHIEWSIKAAD-AGKH-VV--CEKPLALKAGDIDAVIAARDRNKVVV 140 (350)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHH-TTCE-EE--ECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred CCCEEEEeCCCchhHHHHHHHHh-cCCE-EE--EeCCcccchhhHHHHHHHHHHcCCce
Confidence 45555556656656666666665 7753 44 34 334467788999999999755
No 109
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=88.00 E-value=1.2 Score=47.66 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=42.3
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHH-HHHHHHHHHcCC-eEEcc
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMT-RKLNLLAKEKGV-SIIGP 329 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~-~~l~~~a~~~gi-riiGP 329 (806)
++++|.++++.+ ..+|+.++ ++++....+.+.+++. +|.+ +++-.. +...... ++|.+.|++.+. .+++.
T Consensus 45 gv~~~~d~~~ll-~~~DvVii--atp~~~h~~~~~~al~-aG~~-Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~ 117 (320)
T 1f06_A 45 PVFDVADVDKHA-DDVDVLFL--CMGSATDIPEQAPKFA-QFAC-TVDTYDNHRDIPRHRQVMNEAATAAGNVALVST 117 (320)
T ss_dssp CEEEGGGGGGTT-TTCSEEEE--CSCTTTHHHHHHHHHT-TTSE-EECCCCCGGGHHHHHHHHHHHHHHHTCEEECSC
T ss_pred CCceeCCHHHHh-cCCCEEEE--cCCcHHHHHHHHHHHH-CCCE-EEECCCCcCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 467899998844 55666555 5545445555555554 7764 444333 4444444 889999998774 44433
No 110
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=87.91 E-value=0.59 Score=51.85 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=44.1
Q ss_pred cccccHHHHhccC----CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 257 PVYKKMEDAMSKN----KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 257 p~y~sv~daip~~----~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
++|.++++.+... +|+++++|+.++... .+++.+|.++|.. ++|==. ....+..++|.++|+++|+.+ +|-|
T Consensus 92 ~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H-~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~ 169 (417)
T 3v5n_A 92 RVYSDFKEMAIREAKLKNGIEAVAIVTPNHVH-YAAAKEFLKRGIH-VICDKPLTSTLADAKKLKKAADESDALFVLTHN 169 (417)
T ss_dssp GBCSCHHHHHHHHHHCTTCCSEEEECSCTTSH-HHHHHHHHTTTCE-EEEESSSCSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred cccCCHHHHHhcccccCCCCcEEEECCCcHHH-HHHHHHHHhCCCe-EEEECCCcCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 6999999955431 344444445544444 4455555557854 444222 445578889999999999754 4443
No 111
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=87.90 E-value=0.47 Score=52.30 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=50.4
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+++ +|.+..|.+|+++++++
T Consensus 102 dK~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~-~P~vvKp~~~~~g~----Gv~~v~~~~el~~~~~~ 168 (422)
T 2xcl_A 102 SKQFAKDLMKKYDI--PTA-EYET-----FTSFDEAKAYVQEKG-APIVIKADGLAAGK----GVTVAMTEEEAIACLHD 168 (422)
T ss_dssp CHHHHHHHHHHTTC--CBC-CEEE-----ESCHHHHHHHHHHHC-SSEEEEESSCGGGT----CEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-CeEE-----ECCHHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHHH
Confidence 34567788888877 665 4444 467777766544454 59999999886655 36667789999999887
Q ss_pred HcC
Q psy16953 87 RMG 89 (806)
Q Consensus 87 ~~g 89 (806)
.+.
T Consensus 169 ~~~ 171 (422)
T 2xcl_A 169 FLE 171 (422)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 112
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=87.77 E-value=1.8 Score=45.98 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=45.0
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.++|.+.++++...+|++++ ++ |.....+.+.+|.++|. .+++-- -....+..++|.+.|+++|+.+ +|.|
T Consensus 49 ~~~~~~~~~~l~~~~D~V~i--~t-p~~~h~~~~~~al~~gk-~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~~~~~ 121 (325)
T 2ho3_A 49 IQLFDQLEVFFKSSFDLVYI--AS-PNSLHFAQAKAALSAGK-HVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAAR 121 (325)
T ss_dssp CEEESCHHHHHTSSCSEEEE--CS-CGGGHHHHHHHHHHTTC-EEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CeEeCCHHHHhCCCCCEEEE--eC-ChHHHHHHHHHHHHcCC-cEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEh
Confidence 47899999965234555554 54 55454555555544774 455543 2455578889999999999755 4444
No 113
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=87.64 E-value=0.44 Score=53.25 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=46.5
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+++ +|.+..|.+|+++++++.
T Consensus 124 K~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~-~PvVvKp~~~~gg~----Gv~~v~~~~el~~~~~~~ 190 (451)
T 2yrx_A 124 KAFAKELMKKYGI--PTA-DHAA-----FTSYEEAKAYIEQKG-APIVIKADGLAAGK----GVTVAQTVEEALAAAKAA 190 (451)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----ESCHHHHHHHHHHHC-SSEEEEECC----C----CEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCC-CeEE-----ECCHHHHHHHHHhcC-CcEEEEeCCCCCCC----cEEEECCHHHHHHHHHHH
Confidence 3556788888887 665 4444 467787766555555 59999999987655 366777899999888766
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
+
T Consensus 191 ~ 191 (451)
T 2yrx_A 191 L 191 (451)
T ss_dssp H
T ss_pred H
Confidence 4
No 114
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=87.46 E-value=0.53 Score=51.92 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=50.0
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+++ +|.+..|.+|+++++++.
T Consensus 103 K~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~~-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~~~ 169 (424)
T 2yw2_A 103 KAFAKTFMKKYGI--PTA-RYEV-----FTDFEKAKEYVEKVG-APIVVKADGLAAGK----GAVVCETVEKAIETLDRF 169 (424)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----ESCHHHHHHHHHHHC-SSEEEEESSCCTTC----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCC-CeEE-----ECCHHHHHHHHHHcC-CcEEEEeCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 3556788888877 665 4444 467777766544455 59999999886655 367777899999998887
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
+.
T Consensus 170 ~~ 171 (424)
T 2yw2_A 170 LN 171 (424)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 115
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=87.43 E-value=0.58 Score=51.10 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=48.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|++|.+++. |++ +... .++++++.+....++ .++||||..--+++| |.+..|.+|+++++++..
T Consensus 111 ~~~~~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~g~gg~G----v~~v~~~~el~~~~~~~~ 177 (403)
T 4dim_A 111 YKMKEAFKKYNV--NTA-RHFV-----VRNENELKNALENLK-LPVIVKATDLQGSKG----IYIAKKEEEAIDGFNETM 177 (403)
T ss_dssp HHHHHHHHHHTC--CCC-CEEC-----CCSHHHHHHHHHTSC-SSEEEECSCC---------CEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCC-CEEE-----eCCHHHHHHHHhcCC-CCEEEEECCCCCCCC----EEEECCHHHHHHHHHHHH
Confidence 566788888887 666 4444 568888887776776 699999998766654 667778999999988764
No 116
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=87.23 E-value=0.55 Score=53.25 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=43.0
Q ss_pred ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCC-----CEEEEEcC-CCCHHHHHHHHHHHHHcC-CeE
Q psy16953 258 VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQI-----RSIAIIAE-GIPENMTRKLNLLAKEKG-VSI 326 (806)
Q Consensus 258 ~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gv-----k~~viis~-Gf~E~~~~~l~~~a~~~g-iri 326 (806)
+|.++++.+ +.+|+++|+|+.++....+.+++++. +|. |.++|--. ....++.++|.++|+++| +.+
T Consensus 96 ~~~d~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~-aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 96 GFDSLESFA-QYKDIDMIVVSVKVPEHYEVVKNILE-HSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp EESCHHHHH-HCTTCSEEEECSCHHHHHHHHHHHHH-HSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred eeCCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHH-CCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 899999954 33344444445555555555555554 773 66766332 344577889999999999 654
No 117
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=87.08 E-value=1.4 Score=46.69 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=44.1
Q ss_pred ccc-ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 255 LIP-VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 255 ~~p-~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
+.+ +|.++++++.. +|++++++++++....+.+. +|.++|. .+++-- -....+..++|.++|+++|+.+ +|++
T Consensus 46 g~~~~~~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~-~al~~Gk-~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~ 121 (332)
T 2glx_A 46 GIGKSVTSVEELVGD-PDVDAVYVSTTNELHREQTL-AAIRAGK-HVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHH 121 (332)
T ss_dssp TCSCCBSCHHHHHTC-TTCCEEEECSCGGGHHHHHH-HHHHTTC-EEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCC
T ss_pred CCCcccCCHHHHhcC-CCCCEEEEeCChhHhHHHHH-HHHHCCC-eEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence 454 89999995443 33444444555444444444 4444774 455422 2345577889999999999765 4544
No 118
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=87.04 E-value=1.3 Score=47.88 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=60.0
Q ss_pred CceEEEEccChhH----HHhhhhc-ccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhcc-CCCeeE
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMSK-NKDADV 274 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip~-~~Dlav 274 (806)
.-+|.|+|.+... ++.+.+. ++ .+ -.|+-.++..-+++ .+.. +.++|.++++.+.. .+|+++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~-------~l-~av~d~~~~~~~~~---a~~~~~~~~~~~~~~ll~~~~vD~V~ 73 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDI-------RI-VAACDSDLERARRV---HRFISDIPVLDNVPAMLNQVPLDAVV 73 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTE-------EE-EEEECSSHHHHGGG---GGTSCSCCEESSHHHHHHHSCCSEEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCc-------EE-EEEEcCCHHHHHHH---HHhcCCCcccCCHHHHhcCCCCCEEE
Confidence 3589999998632 4455443 22 01 11222333211111 1223 37899999995543 355544
Q ss_pred EEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 275 LVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
| +.++....+-++ +|.++|.. ++|-=. ....+..++|.++|+++|+.+
T Consensus 74 i--~tp~~~H~~~~~-~al~aGkh-Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 74 M--AGPPQLHFEMGL-LAMSKGVN-VFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp E--CSCHHHHHHHHH-HHHHTTCE-EEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred E--cCCcHHHHHHHH-HHHHCCCe-EEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 4 554444444444 44447854 443111 344578889999999999754
No 119
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=86.86 E-value=2.4 Score=44.53 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=69.4
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
+.+|.|+|.+. ...++|.+.|| .|+-++.+...-..+ .+.++..+.+++++ -+ .|+.++ +
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~~~-~~-aDvvi~--~ 77 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG-----------GVTVYDIRIEAMTPL--AEAGATLADSVADV-AA-ADLIHI--T 77 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT-----------CEEEECSSTTTSHHH--HHTTCEECSSHHHH-TT-SSEEEE--C
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHH--HHCCCEEcCCHHHH-Hh-CCEEEE--E
Confidence 35799999763 34678888887 455555442100000 01246788999995 44 777555 4
Q ss_pred cCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 279 ASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++....+.++++.+.. ..-..++|-.+.......+++.+.+++.|++++.
T Consensus 78 vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 128 (296)
T 3qha_A 78 VLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD 128 (296)
T ss_dssp CSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE
T ss_pred CCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 5445677777777642 2223566667777777777888888777877664
No 120
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=86.69 E-value=1.6 Score=47.67 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=70.1
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc--CCCeeEE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK--NKDADVL 275 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~--~~Dlavi 275 (806)
+..+|.|+|.+. ...++|.+.|| .|+-++.+...-..+ ...++..+.|+++++.. .||+.++
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~-----------~V~v~dr~~~~~~~l--~~~g~~~~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGH-----------ECVVYDLNVNAVQAL--EREGIAGARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSCHHHHHHH--HTTTCBCCSSHHHHHHHSCSSCEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCC-----------EEEEEeCCHHHHHHH--HHCCCEEeCCHHHHHhcCCCCCEEEE
Confidence 456899999763 34788999998 455556542100000 01146778899986543 2466555
Q ss_pred EeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 276 VNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
++|...++++++.+.. ..-..+||-.+.......+++.+.+++.|+++++.
T Consensus 88 ---~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vda 139 (358)
T 4e21_A 88 ---MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDV 139 (358)
T ss_dssp ---CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred ---eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeC
Confidence 4455588888888752 22234666666666666777777778888887754
No 121
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=86.69 E-value=1.5 Score=46.50 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=66.2
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.||.++|++. ...+||++.|| .|+-.|.+...-.-| .+.|.....|+.| +-+..|+.++ ++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~-----------~V~v~dr~~~~~~~l--~~~G~~~~~s~~e-~~~~~dvvi~--~l 69 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGY-----------ELVVWNRTASKAEPL--TKLGATVVENAID-AITPGGIVFS--VL 69 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-----------EEEEC-------CTT--TTTTCEECSSGGG-GCCTTCEEEE--CC
T ss_pred CcEEEEecHHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHH--HHcCCeEeCCHHH-HHhcCCceee--ec
Confidence 3799999873 34789999999 455555432100000 1225677889999 4566665444 56
Q ss_pred CChhhHHHHH-----HHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 280 SLRSAYDSTI-----ETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 280 ~~~~~~~~~l-----e~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+...++.+++ ..+. + ..++|-.+-......+++.+.++++|++++.
T Consensus 70 ~~~~~~~~v~~~~~~~~~~-~--~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld 120 (297)
T 4gbj_A 70 ADDAAVEELFSMELVEKLG-K--DGVHVSMSTISPETSRQLAQVHEWYGAHYVG 120 (297)
T ss_dssp SSHHHHHHHSCHHHHHHHC-T--TCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhhHHHHHHHHHHhhcC-C--CeEEEECCCCChHHHHHHHHHHHhcCCceec
Confidence 5555555433 2333 2 3466777777777888899999999988874
No 122
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=86.26 E-value=2.4 Score=48.11 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=63.9
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee---cccccccHHHHhcc--CCCe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV---LIPVYKKMEDAMSK--NKDA 272 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i---~~p~y~sv~daip~--~~Dl 272 (806)
.+.+|.|+|++. ....+|.+.|| .|+-.|.+...-..+ .++. ++....|+++++.. .+|+
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~-----------~V~v~~r~~~~~~~l-~~~~~~~gi~~~~s~~e~v~~l~~aDv 81 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGY-----------TVSIFNRSREKTEEV-IAENPGKKLVPYYTVKEFVESLETPRR 81 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTC-----------CEEEECSSHHHHHHH-HHHSTTSCEEECSSHHHHHHTBCSSCE
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCC-----------eEEEEeCCHHHHHHH-HhhCCCCCeEEeCCHHHHHhCCCCCCE
Confidence 456799999773 34788989887 455556542100000 0011 35567889885543 3676
Q ss_pred eEEEeecCChhhHHHHHHHhcCC-CCCEEEE-EcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 273 DVLVNFASLRSAYDSTIETLGFP-QIRSIAI-IAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~~-gvk~~vi-is~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
.++ ++++...++++++++... .-..+|| .+.|.+ ...+++.+.+++.|+++++
T Consensus 82 Vil--~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~-~~t~~l~~~l~~~g~~~v~ 136 (480)
T 2zyd_A 82 ILL--MVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFF-QDTIRRNRELSAEGFNFIG 136 (480)
T ss_dssp EEE--CSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTTCEEEE
T ss_pred EEE--ECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHCCCCeeC
Confidence 555 454446888888877521 1123444 344554 3444556666666777763
No 123
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=86.14 E-value=0.71 Score=51.51 Aligned_cols=69 Identities=19% Similarity=0.058 Sum_probs=48.4
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCC-eEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSK-LVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
-+..|++|.+++. |++ +... .++.+++.+....++ .+ +||||...-+++ +|.+..|.+|+++++++
T Consensus 129 K~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvvKp~~~~gg~----Gv~~v~~~~el~~~~~~ 195 (452)
T 2qk4_A 129 KRFAKEFMDRHGI--PTA-QWKA-----FTKPEEACSFILSAD-FPALVVKASGLAAGK----GVIVAKSKEEACKAVQE 195 (452)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----ESSHHHHHHHHHHCS-SCEEEEEESBC---C----CEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CeEE-----ECCHHHHHHHHHhCC-CCeEEEEeCCCCCCC----CEEEeCCHHHHHHHHHH
Confidence 3556788888877 665 4444 467777766555555 58 999999886654 46777899999999988
Q ss_pred HcC
Q psy16953 87 RMG 89 (806)
Q Consensus 87 ~~g 89 (806)
.+.
T Consensus 196 ~~~ 198 (452)
T 2qk4_A 196 IMQ 198 (452)
T ss_dssp HTT
T ss_pred HHh
Confidence 765
No 124
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=86.02 E-value=0.75 Score=55.53 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCC-CHHHH----HHHhhcCCCccEEEEEEccCCcch-
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGT-TFMDH----ILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~-~~~D~----l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
..|+|+.+.-.++++...+|.+...|- -...|..+|+. +.. ...+. ++.+..||++|+|++-+ .||+.+
T Consensus 271 ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGg--a~~e~v~~~~~~~l~ii~~d~~vk~ilvNI-fGGI~~c 347 (829)
T 3pff_A 271 PKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGA--PSEQQTYDYAKTILSLMTREKHPDGKILII-GGSIANF 347 (829)
T ss_dssp TTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESC--CCHHHHHHHHHHHHHHTTSSCCTTCEEEEE-CBCBCSS
T ss_pred cCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCC--CCHHHHHHHHHHHHHHHhcCCCCCEEEEEe-cCCccch
Confidence 369999999999999999999999886 37899999998 432 23333 78888999999999987 688865
Q ss_pred HH-------HHHHHHhc-----CCCCCEEEEEeCcCcC
Q psy16953 431 YE-------VCAALKDK-----RITKPLVAWCIGTCAS 456 (806)
Q Consensus 431 ~~-------f~~a~r~~-----~~~KPVV~lk~Grs~~ 456 (806)
.. +.+++++. ..++|||+=..|++..
T Consensus 348 d~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~e 385 (829)
T 3pff_A 348 TNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQ 385 (829)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHH
T ss_pred HHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHH
Confidence 21 45677775 3689999887777764
No 125
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=85.44 E-value=0.67 Score=51.79 Aligned_cols=70 Identities=6% Similarity=-0.076 Sum_probs=49.4
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+..|+++.+++. |++ +... ...++.+++.+....++ .++||||...-+++| |.+..|.+|+++++++.
T Consensus 121 K~~~k~~l~~~Gi--p~p-~~~~---~~~~~~~~~~~~~~~~g-~PvvvKp~~g~gg~G----v~~v~~~~el~~~~~~~ 189 (461)
T 2dzd_A 121 KVKARHAAVNAGI--PVI-PGSD---GPVDGLEDVVAFAEAHG-YPIIIKAALGGGGRG----MRIVRSKSEVKEAFERA 189 (461)
T ss_dssp HHHHHHHHHHTTC--CBC-CBCS---SCCSSHHHHHHHHHHHC-SCEEEEESTTCSSSS----EEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCC-CCcc---cCcCCHHHHHHHHHhcC-CcEEEEeCCCCCCCC----EEEeCCHHHHHHHHHHH
Confidence 3557788888877 665 4330 01467888776555555 599999999887664 66677889999888765
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
+
T Consensus 190 ~ 190 (461)
T 2dzd_A 190 K 190 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=85.40 E-value=0.87 Score=50.65 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=47.6
Q ss_pred hchHHHHHhhCCCCccccccc--ccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCR--FAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|++|.+++. |++ +.. . .++.+++.+....++ .++||||...-+++| |.+..|.+|+++++++
T Consensus 116 ~~~k~~l~~~gi--p~p-~~~~~~-----~~~~~~~~~~~~~~g-~PvvvKp~~g~gg~G----v~~v~~~~el~~~~~~ 182 (451)
T 1ulz_A 116 ARSKEVMKKAGV--PVV-PGSDGV-----LKSLEEAKALAREIG-YPVLLKATAGGGGRG----IRICRNEEELVKNYEQ 182 (451)
T ss_dssp HHHHHHHHHTTC--CBC-CBCSSS-----CCCHHHHHHHHHHHC-SSEEEEECSSSSCCS----CEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCC-CCcccc-----cCCHHHHHHHHHHcC-CCEEEEECCCCCCcc----EEEeCCHHHHHHHHHH
Confidence 457788888877 665 333 3 467888776555555 599999998876553 5666788999888765
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 183 ~~ 184 (451)
T 1ulz_A 183 AS 184 (451)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 127
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=85.08 E-value=1 Score=50.04 Aligned_cols=66 Identities=15% Similarity=-0.064 Sum_probs=48.1
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhcccc----ccCCCeEEccC-ccccccCccCceeecCCHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPW----LESSKLVAKPD-QLIKRRGKLGLIKVNTDFKGAQS 82 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----l~~~~~VvKpd-~l~~~RGK~Glv~l~~~~~e~~~ 82 (806)
-+..|++|.+++. |++ +..+ .++.+++.+.... + .++||||. .--+ || +|.+..|.+|+++
T Consensus 134 K~~~k~~l~~~Gi--p~p-~~~~-----v~~~~e~~~~~~~~~~~~--~P~VvKp~~~g~~--G~--Gv~~v~~~~el~~ 199 (419)
T 4e4t_A 134 RIAEKRFIEASGV--PVA-PHVV-----IESAAALAALDDAALDAV--LPGILKTARLGYD--GK--GQVRVSTAREARD 199 (419)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----ECSHHHHHTSCHHHHHTT--CSEEEEESSSCCT--TT--TEEEECSHHHHHH
T ss_pred HHHHHHHHHHcCc--CCC-CeEE-----ECCHHHHHHHHHhhcccc--CCEEEEecCCCCC--CC--ceEEECCHHHHHH
Confidence 3556888888888 776 5555 5688888776654 5 69999996 3333 33 4777789999999
Q ss_pred HHHHH
Q psy16953 83 WISER 87 (806)
Q Consensus 83 ~~~~~ 87 (806)
++++.
T Consensus 200 a~~~~ 204 (419)
T 4e4t_A 200 AHAAL 204 (419)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88765
No 128
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=85.07 E-value=1.6 Score=46.85 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=45.5
Q ss_pred cccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
+.++|.|+++. -+.+|+++++|+.++....+-+++++. +| |.++|--. ....+..++|.++|+++|+.+
T Consensus 50 ~~~~~~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~-aG-k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 119 (349)
T 3i23_A 50 GVNFTADLNEL-LTDPEIELITICTPAHTHYDLAKQAIL-AG-KSVIVEKPFCDTLEHAEELFALGQEKGVVV 119 (349)
T ss_dssp TCEEESCTHHH-HSCTTCCEEEECSCGGGHHHHHHHHHH-TT-CEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCeEECCHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHH-cC-CEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence 36899999994 444455555556655555555555555 78 45555221 344578889999999999866
No 129
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=84.97 E-value=0.93 Score=50.43 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=47.8
Q ss_pred hchHHHHHhhCCCCccccccc--ccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCR--FAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
+..|++|.+++. |++ +.. . .++.+++.+....++ .++||||...-+++| |.+..|.+|+++++++
T Consensus 116 ~~~k~~l~~~gi--p~p-~~~~~~-----~~~~~~~~~~~~~~g-~PvvvKp~~g~gg~G----v~~v~~~~el~~~~~~ 182 (451)
T 2vpq_A 116 DVAKAEMIKANV--PVV-PGSDGL-----MKDVSEAKKIAKKIG-YPVIIKATAGGGGKG----IRVARDEKELETGFRM 182 (451)
T ss_dssp HHHHHHHHHTTC--CBC-SBCSSC-----BSCHHHHHHHHHHHC-SSEEEEETTCCTTCS----EEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CcC-CCcccC-----cCCHHHHHHHHHhcC-CcEEEEECCCCCCCC----EEEeCCHHHHHHHHHH
Confidence 456788888877 665 433 3 467888776555555 599999998876553 6667789999988876
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 183 ~~ 184 (451)
T 2vpq_A 183 TE 184 (451)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 130
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=84.96 E-value=1.9 Score=45.82 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=70.8
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
++|-++|++. ...+||++.|| .|+-.|.+.. +.- --...|.....|++| +-+..|+.++ ++
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~-----------~v~v~dr~~~-~~~-~l~~~Ga~~a~s~~e-~~~~~dvv~~--~l 67 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY-----------LLNVFDLVQS-AVD-GLVAAGASAARSARD-AVQGADVVIS--ML 67 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-----------EEEEECSSHH-HHH-HHHHTTCEECSSHHH-HHTTCSEEEE--CC
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC-----------eEEEEcCCHH-HHH-HHHHcCCEEcCCHHH-HHhcCCceee--cC
Confidence 4789999763 34789999999 4555555421 000 001125678899999 4565665444 66
Q ss_pred CChhhHHHHHHHhc----CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 280 SLRSAYDSTIETLG----FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 280 ~~~~~~~~~le~~~----~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+...++.+++.... ...-..++|-.+-......+++.+.++++|++++
T Consensus 68 ~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 68 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp SCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred CchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 67777787776421 1122356666777777888899999999998876
No 131
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=84.92 E-value=2.7 Score=44.41 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=71.2
Q ss_pred CCCCCCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCee
Q psy16953 197 PGGQEQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 197 ~~~~~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dla 273 (806)
+......+|.|+|.+. ...++|.+.|| .|+-++++...-..+ .+.++..+.|+.+++. ..|+.
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~-----------~V~~~dr~~~~~~~l--~~~g~~~~~~~~~~~~-~aDvv 81 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGF-----------KVTVWNRTLSKCDEL--VEHGASVCESPAEVIK-KCKYT 81 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSSGGGGHHH--HHTTCEECSSHHHHHH-HCSEE
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHH--HHCCCeEcCCHHHHHH-hCCEE
Confidence 3344557899999874 24678888887 566566542100000 0124677889999544 45665
Q ss_pred EEEeecCChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 274 VLVNFASLRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 274 vivi~~~~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++ +++....+.+++ +.+.. ..-..++|-.+.......+++.+.+++.|++++.
T Consensus 82 i~--~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~ 138 (310)
T 3doj_A 82 IA--MLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE 138 (310)
T ss_dssp EE--CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EE--EcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 55 554455777777 44321 2223566777777777778888888888877765
No 132
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=84.92 E-value=0.79 Score=50.98 Aligned_cols=68 Identities=9% Similarity=-0.087 Sum_probs=47.5
Q ss_pred hhchHHHHHhhCCCCccccccc--ccccccCCCHHHH-HhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCR--FAAVKEETSWAEL-VRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
-+..|++|.+++. |++ +.. . .++.+++ .+....++ .++||||...-+++| |.+..|.+|+++++
T Consensus 116 K~~~k~~l~~~gi--p~p-~~~~~~-----~~~~~~~~~~~~~~~g-~PvvvKp~~g~gg~G----v~~v~~~~el~~~~ 182 (449)
T 2w70_A 116 KVSAIAAMKKAGV--PCV-PGSDGP-----LGDDMDKNRAIAKRIG-YPVIIKASGGGGGRG----MRVVRGDAELAQSI 182 (449)
T ss_dssp HHHHHHHHHHHTC--CBC-SBCSSC-----CCSCHHHHHHHHHHHC-SSEEEEETTCCTTTT----CEEECSHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CcC-CCcccc-----cCCHHHHHHHHHHHhC-CcEEEEECCCCCCCC----EEEeCCHHHHHHHH
Confidence 3557888888877 665 332 2 4567777 55444455 599999999876654 56667889998888
Q ss_pred HHHc
Q psy16953 85 SERM 88 (806)
Q Consensus 85 ~~~~ 88 (806)
++.+
T Consensus 183 ~~~~ 186 (449)
T 2w70_A 183 SMTR 186 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 133
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=84.69 E-value=2.6 Score=44.86 Aligned_cols=111 Identities=8% Similarity=0.054 Sum_probs=67.6
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
..+|.|+|.+. ...++|.+.|| .|+-++++...-.-+ .+.++..+.+++++ -+..|+.++ +
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~-----------~V~~~dr~~~~~~~l--~~~g~~~~~~~~e~-~~~aDvVi~--~ 94 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGY-----------ALQVWNRTPARAASL--AALGATIHEQARAA-ARDADIVVS--M 94 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTC-----------EEEEECSCHHHHHHH--HTTTCEEESSHHHH-HTTCSEEEE--C
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-----------eEEEEcCCHHHHHHH--HHCCCEeeCCHHHH-HhcCCEEEE--E
Confidence 45899999763 34778888887 566666652100000 01146778899995 445666555 5
Q ss_pred cCChhhHHHHHH--Hh-cCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 279 ASLRSAYDSTIE--TL-GFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 279 ~~~~~~~~~~le--~~-~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++....+..++. .+ ....-..++|-.+..+....+++.+.+++.|++++.
T Consensus 95 vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~ 147 (320)
T 4dll_A 95 LENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD 147 (320)
T ss_dssp CSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 544566776664 22 112223466666677777777888888888877664
No 134
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=84.42 E-value=3.6 Score=46.77 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=67.4
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccc---cceeecccccccHHHHhcc--CCCe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYW---GHKEVLIPVYKKMEDAMSK--NKDA 272 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~---g~~~i~~p~y~sv~daip~--~~Dl 272 (806)
+..+|.|+|++. ...++|.+.|| .|+-.|.+...-..+ |.....+..+.|++|++.. .+|+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~-----------~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDv 71 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGF-----------VVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRR 71 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCE
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCE
Confidence 346799999763 34789999998 455555542100000 0000013346889995543 4666
Q ss_pred eEEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 273 DVLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
.++ ++++...++++++++.. ..-..+||-.+........++.+..++.|+++++.
T Consensus 72 Vil--~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~ 127 (484)
T 4gwg_A 72 IIL--LVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS 127 (484)
T ss_dssp EEE--CSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEE--ecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC
Confidence 555 55555688888887752 12234555555555555666667777788887753
No 135
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=83.73 E-value=0.6 Score=50.68 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=44.0
Q ss_pred hchHHHH-HhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDII-NRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|+++ .+++. |++ +... .++.+++.+....++ .++||||...-+++| |.+..|.+|+++++++.
T Consensus 114 ~~~~~~l~~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~g~gg~G----v~~v~~~~el~~~~~~~ 180 (391)
T 1kjq_A 114 EGIRRLAAEELQL--PTS-TYRF-----ADSESLFREAVADIG-YPCIVKPVMSSSGKG----QTFIRSAEQLAQAWKYA 180 (391)
T ss_dssp HHHHHHHHTTSCC--CBC-CEEE-----ESSHHHHHHHHHHHC-SSEEEEESCC---CC----CEEECSGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCC-Ceee-----eCCHHHHHHHHHhcC-CCEEEEeCCCCCCCC----eEEECCHHHHHHHHHHH
Confidence 4566776 67766 665 4444 467777766555555 599999997655543 55666789998888776
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
+
T Consensus 181 ~ 181 (391)
T 1kjq_A 181 Q 181 (391)
T ss_dssp H
T ss_pred H
Confidence 4
No 136
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=83.49 E-value=0.91 Score=50.51 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=50.6
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+..|++|.+++. |++ +... ...+|++++.+....++ .++||||..--++|| |.+..|.+|+++++++.
T Consensus 120 K~~~~~~l~~~Gi--p~p-~~~~---~~~~~~~e~~~~~~~~g-~PvvvKp~~g~gg~G----v~~v~~~~el~~~~~~~ 188 (446)
T 3ouz_A 120 KSKAKQVMQRAGV--PVI-PGSD---GALAGAEAAKKLAKEIG-YPVILKAAAGGGGRG----MRVVENEKDLEKAYWSA 188 (446)
T ss_dssp HHHHHHHHHHTTC--CBC-SBCS---SSCCSHHHHHHHHHHHC-SSEEEEETTCCTTCS----EEEECSGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CcC-CCcc---cCCCCHHHHHHHHHHhC-CCEEEEECCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 4567788888877 665 4430 01578899888777777 699999997665554 66777889999988765
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 189 ~ 189 (446)
T 3ouz_A 189 E 189 (446)
T ss_dssp H
T ss_pred H
Confidence 4
No 137
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=83.18 E-value=0.49 Score=50.16 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=45.9
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhc-cccccCCCeEEccCccccccCccCceeecCCHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRN-EPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
..+..|++|.+++. |++ +..+ ++...+++++.+. ...++ .++||||..--+.+| |.+..|.+|++++++
T Consensus 107 dK~~~k~~l~~~Gi--p~p-~~~~--~~~~~~~~~~~~~~~~~~g-~PvvvKP~~~~~s~G----v~~v~~~~el~~a~~ 176 (317)
T 4eg0_A 107 DKFRTKLVWQQTGV--PTP-PFET--VMRGDDYAARATDIVAKLG-LPLFVKPASEGSSVA----VLKVKTADALPAALS 176 (317)
T ss_dssp CHHHHHHHHHHTTC--CCC-CEEE--EETTSCHHHHHHHHHHHHC-SCEEEEECC-----C----CEEECSGGGHHHHHH
T ss_pred CHHHHHHHHHHCCc--CCC-CEEE--EECchhHHHHHHHHHHhcC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHH
Confidence 45677899999988 766 4443 3333344443310 13444 599999988765554 445568899999988
Q ss_pred HHcCCeeEE
Q psy16953 86 ERMGKDQVV 94 (806)
Q Consensus 86 ~~~g~~i~~ 94 (806)
+....+-++
T Consensus 177 ~~~~~~~~~ 185 (317)
T 4eg0_A 177 EAATHDKIV 185 (317)
T ss_dssp HHTTTCSEE
T ss_pred HHHhCCCeE
Confidence 765443333
No 138
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=83.01 E-value=0.49 Score=51.00 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=21.6
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
..+..|++|.+++. |++ +... .+ .+++.+....++ .++||||...- +++| |.+..|.+|++++++
T Consensus 92 dK~~~~~~l~~~gi--p~p-~~~~-----~~-~~~~~~~~~~~~-~P~vvKp~~~~~~g~G----v~~v~~~~el~~~~~ 157 (365)
T 2z04_A 92 SRIREKLFLKKHGF--PVP-EFLV-----IK-RDEIIDALKSFK-LPVVIKAEKLGYDGKG----QYRIKKLEDANQVVK 157 (365)
T ss_dssp CHHHHHHHHHTTTC--CCC-CEEE-----C----------------CEEEECC---------------------------
T ss_pred CHHHHHHHHHHcCC--CCC-CEEE-----Ec-HHHHHHHHHhcC-CCEEEEEcCCCcCCCC----eEEECCHHHHHHHHH
Confidence 45667889999987 665 4444 23 455544444444 59999999987 7653 666778899998887
Q ss_pred HHc
Q psy16953 86 ERM 88 (806)
Q Consensus 86 ~~~ 88 (806)
+.+
T Consensus 158 ~~~ 160 (365)
T 2z04_A 158 NHD 160 (365)
T ss_dssp ---
T ss_pred Hhc
Confidence 654
No 139
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=82.82 E-value=2.7 Score=42.64 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCCceEEEEccCh--hHHHh-hh--hcccccccCCCcccceeEeecCCCcccccccceee-ccccc--ccHHHHhccCCC
Q psy16953 200 QEQTKAIVWGMQT--RAVQS-ML--DFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVY--KKMEDAMSKNKD 271 (806)
Q Consensus 200 ~~~t~v~V~G~~~--r~~~~-ll--~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y--~sv~daip~~~D 271 (806)
++..+++|+|++. +.+.+ +. ..|| .+. .++-.+|.. +| ..+ ++|+| .++.+.+.+. |
T Consensus 83 ~~~~rV~IIGAG~~G~~La~~~~~~~~g~-------~iV-g~~D~dp~k-----~g-~~i~gv~V~~~~dl~eli~~~-D 147 (215)
T 2vt3_A 83 DEMTDVILIGVGNLGTAFLHYNFTKNNNT-------KIS-MAFDINESK-----IG-TEVGGVPVYNLDDLEQHVKDE-S 147 (215)
T ss_dssp C---CEEEECCSHHHHHHHHCC------C-------CEE-EEEESCTTT-----TT-CEETTEEEEEGGGHHHHCSSC-C
T ss_pred CCCCEEEEEccCHHHHHHHHHHhcccCCc-------EEE-EEEeCCHHH-----HH-hHhcCCeeechhhHHHHHHhC-C
Confidence 3556899999984 33222 11 2233 223 355567653 23 344 46654 4666755555 7
Q ss_pred eeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~~gvk~~viis~ 305 (806)
++++ +.|.....++.+.|.+.|++.++.++.
T Consensus 148 ~ViI---AvPs~~~~ei~~~l~~aGi~~Ilnf~P 178 (215)
T 2vt3_A 148 VAIL---TVPAVAAQSITDRLVALGIKGILNFTP 178 (215)
T ss_dssp EEEE---CSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEE---ecCchhHHHHHHHHHHcCCCEEEEcCc
Confidence 7777 778877889999999999999998875
No 140
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=82.56 E-value=0.93 Score=49.51 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=47.8
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHH-HHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWA-ELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
..+..|++|.+++. |++ +..+ ++...+.+ ++.+....++ .++||||...-+.+| |.+..|.+|++++++
T Consensus 135 DK~~~k~~l~~~Gi--p~p-~~~~--~~~~~~~~~~~~~~~~~~g-~PvvVKP~~~~~s~G----v~~v~~~~el~~a~~ 204 (377)
T 1ehi_A 135 DKALTKELLTVNGI--RNT-KYIV--VDPESANNWSWDKIVAELG-NIVFVKAANQGSSVG----ISRVTNAEEYTEALS 204 (377)
T ss_dssp SHHHHHHHHHTTTC--CCC-CEEE--ECTTGGGGCCHHHHHHHHC-SCEEEEESSCCTTTT----EEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-CEEE--EeccccchHHHHHHHHhcC-CCEEEEeCCCCCCcC----EEEeCCHHHHHHHHH
Confidence 45677899999988 666 4443 22221211 1222222344 699999999877765 677779999999998
Q ss_pred HHcCC
Q psy16953 86 ERMGK 90 (806)
Q Consensus 86 ~~~g~ 90 (806)
+....
T Consensus 205 ~~~~~ 209 (377)
T 1ehi_A 205 DSFQY 209 (377)
T ss_dssp HHTTT
T ss_pred HHHhc
Confidence 86543
No 141
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=82.49 E-value=4.2 Score=46.28 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=64.4
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCc--ccccccc-eeecccccccHHHHhcc--CCCeeE
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFYWGH-KEVLIPVYKKMEDAMSK--NKDADV 274 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~~g~-~~i~~p~y~sv~daip~--~~Dlav 274 (806)
.+|.|+|++. ...++|.+.|| .|+-.|.+.. +++.-|. ...++....|+++++.. .+|+.+
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~-----------~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGF-----------TVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEE
Confidence 4789999773 34789999998 4555555421 0000000 00235667889885543 367655
Q ss_pred EEeecCChhhHHHHHHHhcCC-CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 275 LVNFASLRSAYDSTIETLGFP-QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+ ++++...++++++++... .-..+||-.+.......+++.+.+++.|+++++
T Consensus 80 l--~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~ 132 (497)
T 2p4q_A 80 L--LVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVG 132 (497)
T ss_dssp E--CCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred E--EcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeC
Confidence 5 454446888888877521 112345534444444555566666667777764
No 142
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=82.46 E-value=0.64 Score=51.18 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=50.0
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHH----HHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWA----ELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQS 82 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~ 82 (806)
..+..|++|.+++. |++ +..++ ++.+ ++.+....++ .|+||||...-+.+| |.+..+.+|+++
T Consensus 159 DK~~~k~~l~~~GI--p~p-~~~~~-----~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~G----v~~v~~~~el~~ 225 (386)
T 3e5n_A 159 DKDMAKRVLRDARL--AVA-PFVCF-----DRHTAAHADVDTLIAQLG-LPLFVKPANQGSSVG----VSQVRTADAFAA 225 (386)
T ss_dssp BHHHHHHHHHHTTC--CBC-CEEEE-----EHHHHTTCCHHHHHHHHC-SSEEEEESBSCSSTT----CEEECSGGGHHH
T ss_pred CHHHHHHHHHHCCC--CCC-CEEEE-----eCcccchhhHHHHHHhcC-CCEEEEECCCCcCCC----EEEECCHHHHHH
Confidence 45678999999988 776 44441 2222 3333334455 599999998766554 455668899999
Q ss_pred HHHHHcCCeeEEE
Q psy16953 83 WISERMGKDQVVL 95 (806)
Q Consensus 83 ~~~~~~g~~i~~~ 95 (806)
++++....+-+++
T Consensus 226 a~~~a~~~~~~vl 238 (386)
T 3e5n_A 226 ALALALAYDHKVL 238 (386)
T ss_dssp HHHHHTTTCSEEE
T ss_pred HHHHHHhCCCcEE
Confidence 9988765444443
No 143
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=82.07 E-value=2.3 Score=44.91 Aligned_cols=112 Identities=11% Similarity=0.004 Sum_probs=67.9
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...+|.|+|.+. ...++|.+.|| .|+-.+++...-..+ .+.+...+.|+.+++. ..|+.++
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~e~~~-~aDvVi~-- 71 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGK-----------RVAIWNRSPGKAAAL--VAAGAHLCESVKAALS-ASPATIF-- 71 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSHHHHHHH--HHHTCEECSSHHHHHH-HSSEEEE--
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHH--HHCCCeecCCHHHHHh-cCCEEEE--
Confidence 346899999873 34778899887 455556542100000 0124667889999544 3566554
Q ss_pred ecCChhhHHHHHH--HhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 278 FASLRSAYDSTIE--TLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 278 ~~~~~~~~~~~le--~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+++....+..+++ .+....-..++|-.+.......+++.+.+++.|++++.
T Consensus 72 ~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vd 124 (306)
T 3l6d_A 72 VLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVK 124 (306)
T ss_dssp CCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred EeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 5555555777664 22111123456666666666777888888888988875
No 144
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=82.04 E-value=0.88 Score=50.21 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=48.3
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCC--CHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEET--SWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
.+..|++|.+++. |++ +..+ .+ +.+++.+....++ .|+||||...- +++ +|.+..|.+|+++++
T Consensus 124 K~~~k~~l~~~Gi--p~p-~~~~-----~~~~~~~~~~~~~~~~g-~P~VvKp~~gg~~g~----Gv~~v~~~~el~~a~ 190 (403)
T 3k5i_A 124 KFNQKEHLRKYGI--PMA-EHRE-----LVENTPAELAKVGEQLG-YPLMLKSKTMAYDGR----GNFRVNSQDDIPEAL 190 (403)
T ss_dssp HHHHHHHHHTTTC--CBC-CEEE-----ESSCCHHHHHHHHHHHC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHH
T ss_pred HHHHHHHHHHCCc--CCC-CEEE-----EcCCCHHHHHHHHHHhC-CCEEEEeCCCCcCCC----CEEEECCHHHHHHHH
Confidence 4567788888887 766 5554 34 7888887777776 69999998653 444 466677888888877
Q ss_pred HHH
Q psy16953 85 SER 87 (806)
Q Consensus 85 ~~~ 87 (806)
++.
T Consensus 191 ~~~ 193 (403)
T 3k5i_A 191 EAL 193 (403)
T ss_dssp HHT
T ss_pred Hhc
Confidence 653
No 145
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=81.25 E-value=0.93 Score=49.46 Aligned_cols=72 Identities=10% Similarity=-0.056 Sum_probs=48.9
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
-+..|++|.+++. |++ +..+ .++.+++.+....++ .++||||...- +++| |.+..|.+|+++++++
T Consensus 111 K~~~k~~l~~~Gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~gg~~g~G----v~~v~~~~el~~a~~~ 177 (377)
T 3orq_A 111 RLTEKETLKSAGT--KVV-PFIS-----VKESTDIDKAIETLG-YPFIVKTRFGGYDGKG----QVLINNEKDLQEGFKL 177 (377)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----ECSSTHHHHHHHHTC-SSEEEEESSSCCTTTT----EEEECSTTSHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CeEE-----ECCHHHHHHHHHHcC-CCEEEEeCCCCCCCCC----eEEECCHHHHHHHHHh
Confidence 3556788888877 666 5444 345566655555565 69999998653 4443 6667788999998887
Q ss_pred HcCCee
Q psy16953 87 RMGKDQ 92 (806)
Q Consensus 87 ~~g~~i 92 (806)
..+.++
T Consensus 178 ~~~~~~ 183 (377)
T 3orq_A 178 IETSEC 183 (377)
T ss_dssp HTTSCE
T ss_pred cCCCcE
Confidence 765433
No 146
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=80.83 E-value=2.4 Score=48.69 Aligned_cols=73 Identities=7% Similarity=-0.098 Sum_probs=50.9
Q ss_pred hhchHHHHHhhCCCCccccccccc---ccc------------------cCCCHHHHHhccccccCCCeEEccCccccccC
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFA---AVK------------------EETSWAELVRNEPWLESSKLVAKPDQLIKRRG 66 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RG 66 (806)
.+..|+++.+++. |++ +.... .++ ..++++++.+....++ .++||||...-++|
T Consensus 174 K~~~k~~l~~~GI--p~p-~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g-~PvVvKp~~g~gg~- 248 (554)
T 1w96_A 174 KISSTIVAQSAKV--PCI-PWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG-FPVMIKASEGGGGK- 248 (554)
T ss_dssp HHHHHHHHHHTTC--CBC-CBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC-SSEEEEETTCCTTT-
T ss_pred HHHHHHHHHHCCC--CcC-CccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC-CCEEEEECCCCCCc-
Confidence 3557889999988 665 33321 000 1368888876555565 69999999987665
Q ss_pred ccCceeecCCHHHHHHHHHHHc
Q psy16953 67 KLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 67 K~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+|.+..|.+|+++++++.+
T Consensus 249 ---Gv~~v~~~~el~~a~~~~~ 267 (554)
T 1w96_A 249 ---GIRQVEREEDFIALYHQAA 267 (554)
T ss_dssp ---TEEEECSHHHHHHHHHHHH
T ss_pred ---eEEEECCHHHHHHHHHHHH
Confidence 3666678999999988765
No 147
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=79.87 E-value=2.8 Score=44.37 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=39.9
Q ss_pred cccc-cccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPV-YKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~-y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~girii 327 (806)
+++. |.+..+.+...+|++++ ++ |.....+.+.+|.++|.. +++-- -....+..++|.++|+++|+.+.
T Consensus 48 g~~~~~~~~~~~l~~~~D~V~i--~t-p~~~h~~~~~~al~~Gk~-V~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (323)
T 1xea_A 48 RVSATCTDYRDVLQYGVDAVMI--HA-ATDVHSTLAAFFLHLGIP-TFVDKPLAASAQECENLYELAEKHHQPLY 118 (323)
T ss_dssp TCCCCCSSTTGGGGGCCSEEEE--CS-CGGGHHHHHHHHHHTTCC-EEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred CCCccccCHHHHhhcCCCEEEE--EC-CchhHHHHHHHHHHCCCe-EEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence 4453 54444436345666555 44 554445555444447754 44422 23445778889999999997653
No 148
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=79.85 E-value=6.6 Score=40.69 Aligned_cols=110 Identities=5% Similarity=-0.063 Sum_probs=67.7
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|.+.|| .|+-++++...-..+ .+.++..+.++.+++. ..|+.++ ++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~~~~~-~aDvvi~--~v 65 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-----------SVTIWNRSPEKAEEL--AALGAERAATPCEVVE-SCPVTFA--ML 65 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSSGGGGHHH--HHTTCEECSSHHHHHH-HCSEEEE--CC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-----------eEEEEcCCHHHHHHH--HHCCCeecCCHHHHHh-cCCEEEE--Ec
Confidence 4799999863 24678888887 566666542100000 0114678889999544 4566555 44
Q ss_pred CChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 280 SLRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 280 ~~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+....+..++ +.+.. ..-..++|-.++......+++.+.+++.|++++.
T Consensus 66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pef_A 66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE 118 (287)
T ss_dssp SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 4356777777 43321 1123466667777777788888888888877664
No 149
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=79.73 E-value=2.8 Score=46.01 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=48.5
Q ss_pred ecc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 254 VLI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 254 i~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.++ ++|.+.++.+ +.+|+++++|+.|+....+-+++++. +|. .++|==. ....+..++|+++|+++|+.+ +|-|
T Consensus 79 ~~~~~~y~d~~~ll-~~~~vD~V~I~tp~~~H~~~~~~al~-aGk-hVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~ 155 (412)
T 4gqa_A 79 LGAEKAYGDWRELV-NDPQVDVVDITSPNHLHYTMAMAAIA-AGK-HVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFN 155 (412)
T ss_dssp HTCSEEESSHHHHH-HCTTCCEEEECSCGGGHHHHHHHHHH-TTC-EEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECG
T ss_pred cCCCeEECCHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHH-cCC-CeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccc
Confidence 344 5999999954 44555566666666666666666666 774 4444222 344578889999999999754 4443
No 150
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=79.70 E-value=5.3 Score=45.07 Aligned_cols=111 Identities=20% Similarity=0.130 Sum_probs=61.3
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceee---cccccccHHHHhcc--CCCeeE
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV---LIPVYKKMEDAMSK--NKDADV 274 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i---~~p~y~sv~daip~--~~Dlav 274 (806)
.+|.|+|++. ...++|.+.|| .|+-+|++...-..+ .++. ++..+.++++++.. .+|+.+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~-----------~V~v~dr~~~~~~~l-~~~~~~~gi~~~~s~~e~v~~l~~aDvVi 73 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGY-----------TVAIYNRTTSKTEEV-FKEHQDKNLVFTKTLEEFVGSLEKPRRIM 73 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSHHHHHHH-HHHTTTSCEEECSSHHHHHHTBCSSCEEE
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCC-----------EEEEEcCCHHHHHHH-HHhCcCCCeEEeCCHHHHHhhccCCCEEE
Confidence 5799999763 34778888887 455556542100000 0011 35678899885543 367655
Q ss_pred EEeecCChhhHHHHHHHhcC-CCCCEEEE-EcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 275 LVNFASLRSAYDSTIETLGF-PQIRSIAI-IAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~-~gvk~~vi-is~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+ ++++...++++++++.. ..-..+|| .+.|.+ ...+++.+.+.+.|+++++
T Consensus 74 l--avp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~l~~~l~~~g~~~v~ 126 (474)
T 2iz1_A 74 L--MVQAGAATDATIKSLLPLLDIGDILIDGGNTHF-PDTMRRNAELADSGINFIG 126 (474)
T ss_dssp E--CCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHTTTSSCEEEE
T ss_pred E--EccCchHHHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHHHHCCCeEEC
Confidence 5 44444678888887642 11122444 344543 3445555655556666653
No 151
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=79.66 E-value=7 Score=40.70 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=67.2
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|.+.|| .|+-++++...-..+ .+.++..+.+..++ -...|+.++ ++
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~-----------~V~~~d~~~~~~~~~--~~~g~~~~~~~~~~-~~~aDvvi~--~v 67 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGY-----------LLNVFDLVQSAVDGL--VAAGASAARSARDA-VQGADVVIS--ML 67 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-----------EEEEECSSHHHHHHH--HHTTCEECSSHHHH-HTTCSEEEE--CC
T ss_pred CEEEEEeecHHHHHHHHHHHhCCC-----------eEEEEcCCHHHHHHH--HHCCCeEcCCHHHH-HhCCCeEEE--EC
Confidence 5799999763 34778888887 566666652100000 01146778899995 444666555 55
Q ss_pred CChhhHHHHHH---Hhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 280 SLRSAYDSTIE---TLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 280 ~~~~~~~~~le---~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+....+..+++ .+. ...-..++|-.+.......+++.+...+.|++++.
T Consensus 68 p~~~~~~~v~~~~~~~~~~l~~~~~vi~~st~~~~~~~~l~~~~~~~g~~~~~ 120 (302)
T 2h78_A 68 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD 120 (302)
T ss_dssp SCHHHHHHHHHSSSCGGGSSCSSCEEEECSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHcCchhHHhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44667788886 432 12223466666666666667777777777776653
No 152
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=79.27 E-value=3 Score=45.12 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=44.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~giri 326 (806)
.++|.++++. -+.+|+++++|+.++....+-+++++. +|. .++|-=. ....+..++|.++|+++|+.+
T Consensus 74 ~~~~~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 74 ARRIATAEEI-LEDENIGLIVSAAVSSERAELAIRAMQ-HGK-DVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp CCEESCHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHH-TTC-EEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred CcccCCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHH-CCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 6789999994 444455555555555555555555554 784 4554222 445578889999999999765
No 153
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=79.26 E-value=5.7 Score=44.85 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=61.3
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCc--ccccccc-eeecccccccHHHHhc--cCCCeeE
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFYWGH-KEVLIPVYKKMEDAMS--KNKDADV 274 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~~g~-~~i~~p~y~sv~daip--~~~Dlav 274 (806)
.+|.|+|++. ....+|.+.|| .|+-++.+.. +++.-+. ...++..+.++++++. +.+|+.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~-----------~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF-----------VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEE
Confidence 4799999763 34678888887 3555554321 0010000 0023567888998554 3677655
Q ss_pred EEeecCChhhHHHHHHHhc---CCCCCEEEE-EcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 275 LVNFASLRSAYDSTIETLG---FPQIRSIAI-IAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~---~~gvk~~vi-is~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+ ++++...++++++++. .+| .+|| .+.|.++ ..+++.+...+.|+++++
T Consensus 72 l--aVp~~~~v~~vl~~l~~~l~~g--~iII~~s~~~~~-~~~~l~~~l~~~g~~~v~ 124 (482)
T 2pgd_A 72 L--LVKAGQAVDNFIEKLVPLLDIG--DIIIDGGNSEYR-DTMRRCRDLKDKGILFVG 124 (482)
T ss_dssp E--CSCTTHHHHHHHHHHHHHCCTT--CEEEECSCCCHH-HHHHHHHHHHHTTCEEEE
T ss_pred E--eCCChHHHHHHHHHHHhhcCCC--CEEEECCCCCHH-HHHHHHHHHHHcCCeEeC
Confidence 5 4444357888887653 233 2444 3445543 344556666666777664
No 154
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=79.18 E-value=3.9 Score=42.50 Aligned_cols=111 Identities=7% Similarity=-0.046 Sum_probs=67.4
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|.+.|| .|+-++++...-..+ .+.++....++.+++. ..|+.++ ++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~~~~~-~advvi~--~v 65 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF-----------DVTVWNRNPAKCAPL--VALGARQASSPAEVCA-ACDITIA--ML 65 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC-----------CEEEECSSGGGGHHH--HHHTCEECSCHHHHHH-HCSEEEE--CC
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-----------eEEEEcCCHHHHHHH--HHCCCeecCCHHHHHH-cCCEEEE--Ec
Confidence 3688999763 24678888887 455556542100000 0114677889999544 4566555 55
Q ss_pred CChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 280 SLRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 280 ~~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
+....+.+++ +.+.. ..-..++|-++.......+++.+.+++.|++++.+
T Consensus 66 ~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~ 119 (287)
T 3pdu_A 66 ADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA 119 (287)
T ss_dssp SSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 5555777777 54432 12234666667777777778888888888777643
No 155
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=79.12 E-value=10 Score=39.09 Aligned_cols=107 Identities=8% Similarity=-0.010 Sum_probs=59.3
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeec-CCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFT-GDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvn-p~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
.+|.|+|.+. ...++|.+.|+ .|+-++ +..-+.+ .+.++..+.++.+++ +..|+.++ +
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-----------~V~~~~~~~~~~~~----~~~g~~~~~~~~~~~-~~~D~vi~--~ 65 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGH-----------QLHVTTIGPVADEL----LSLGAVNVETARQVT-EFADIIFI--M 65 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTC-----------EEEECCSSCCCHHH----HTTTCBCCSSHHHHH-HTCSEEEE--C
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-----------EEEEEcCHHHHHHH----HHcCCcccCCHHHHH-hcCCEEEE--E
Confidence 4799999763 23677777776 344333 3321111 011466788998854 45666555 5
Q ss_pred cCChhhHHHHHH---HhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 279 ASLRSAYDSTIE---TLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 279 ~~~~~~~~~~le---~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
++....+..+++ .+.. ..-..++|..+.......+++.+.+.+.|++++
T Consensus 66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~ 118 (295)
T 1yb4_A 66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL 118 (295)
T ss_dssp CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 545555778886 4321 122334443333344455667777766666665
No 156
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=79.06 E-value=1.5 Score=48.29 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=42.1
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|++|.+++. |++ +... .++.+++.+ ..++ .|+||||...-+++| |.+..|.+|+++++++..
T Consensus 114 ~~~k~~l~~~gi--p~p-~~~~-----~~~~~~~~~--~~~g-~P~vvKp~~g~gs~G----v~~v~~~~el~~a~~~~~ 178 (425)
T 3vot_A 114 NKTRSILQQNGL--NTP-VFHE-----FHTLADLEN--RKLS-YPLVVKPVNGFSSQG----VVRVDDRKELEEAVRKVE 178 (425)
T ss_dssp HHHHHHHHHTTC--CCC-CEEE-----ESSGGGGTT--CCCC-SSEEEEESCC---------CEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--CCC-ceec-----cCcHHHHHH--hhcC-CcEEEEECCCCCCCC----ceEechHHHHHHHHHHHH
Confidence 556788888877 665 4333 345666543 3444 699999987665554 667779999999887653
No 157
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=78.63 E-value=1.3 Score=50.21 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=49.8
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|+++.+++. |++ +... .++.+++.+....++ .++||||..--+++| |.+..|.+|+++++++
T Consensus 139 DK~~~k~~l~~~GI--pvp-~~~~-----v~s~ee~~~~~~~lg-~PvVVKP~~g~gg~G----v~iv~~~eel~~a~~~ 205 (474)
T 3vmm_A 139 DKNKMRDAFNKAGV--KSI-KNKR-----VTTLEDFRAALEEIG-TPLILKPTYLASSIG----VTLITDTETAEDEFNR 205 (474)
T ss_dssp CHHHHHHHHHHTTS--CCC-CEEE-----ECSHHHHHHHHHHSC-SSEEEEESSCCTTTT----CEEECCTTSHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCC-CeEE-----ECCHHHHHHHHHHcC-CCEEEEECCCCcCce----EEEECCHHHHHHHHHH
Confidence 45678899999988 776 5555 567888887777776 699999997666553 4555677888777765
Q ss_pred H
Q psy16953 87 R 87 (806)
Q Consensus 87 ~ 87 (806)
.
T Consensus 206 ~ 206 (474)
T 3vmm_A 206 V 206 (474)
T ss_dssp H
T ss_pred H
Confidence 4
No 158
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=78.61 E-value=1.3 Score=48.19 Aligned_cols=67 Identities=15% Similarity=-0.078 Sum_probs=47.2
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCcccc-ccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIK-RRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~-~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.+..|++|.+++. |++ +... .++.+++.+....++ .++||||...-+ +| +|.+..|.+|+++++++
T Consensus 113 K~~~k~~l~~~Gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~~~~ 179 (389)
T 3q2o_A 113 RFTEKNAIEKAGL--PVA-TYRL-----VQNQEQLTEAIAELS-YPSVLKTTTGGYDGK----GQVVLRSEADVDEARKL 179 (389)
T ss_dssp HHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHHHHC-SSEEEEESSCCSSSC----CEEEESSGGGHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CeEE-----ECCHHHHHHHHHhcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHHHh
Confidence 4556788888877 666 5554 567888877766776 699999976432 23 36666788888887765
Q ss_pred H
Q psy16953 87 R 87 (806)
Q Consensus 87 ~ 87 (806)
.
T Consensus 180 ~ 180 (389)
T 3q2o_A 180 A 180 (389)
T ss_dssp H
T ss_pred c
Confidence 3
No 159
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=78.50 E-value=0.99 Score=49.92 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=42.0
Q ss_pred hchHHHH-HhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 9 ATGKDII-NRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 9 y~~K~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
+..|++| .+++. |++ +... .++.+++.+....++ .++||||....+++| |.+..|.+|+++++++.
T Consensus 122 ~~~k~~l~~~~gi--p~p-~~~~-----~~~~~~~~~~~~~~g-~P~vvKp~~g~gg~G----v~~v~~~~el~~~~~~~ 188 (433)
T 2dwc_A 122 ERLRETLVKEAKV--PTS-RYMY-----ATTLDELYEACEKIG-YPCHTKAIMSSSGKG----SYFVKGPEDIPKAWEEA 188 (433)
T ss_dssp HHHHHHHHHTSCC--CCC-CEEE-----ESSHHHHHHHHHHHC-SSEEEEECCC----------EEECSGGGHHHHHHC-
T ss_pred HHHHHHHHHhcCC--CCC-CeeE-----eCCHHHHHHHHHhcC-CCEEEEECCCcCCCC----eEEECCHHHHHHHHHHH
Confidence 4567777 77877 665 4444 467777766555555 599999997665543 55666889998888766
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
+
T Consensus 189 ~ 189 (433)
T 2dwc_A 189 K 189 (433)
T ss_dssp -
T ss_pred H
Confidence 5
No 160
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=78.13 E-value=4.5 Score=40.77 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCCCceEEEEccChhHHHhhhhc-----ccccccCCCcccceeEeecCCCcccccccceee-cccc--cccHHHHhccCC
Q psy16953 199 GQEQTKAIVWGMQTRAVQSMLDF-----DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPV--YKKMEDAMSKNK 270 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~~~~ll~~-----gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~--y~sv~daip~~~ 270 (806)
.++..+++|+|++.-- +.+.++ || .+. .++-.+|.. +| ..+ ++|+ +.++.+.+.+.+
T Consensus 77 ~~~~~rV~IIGaG~~G-~~la~~~~~~~g~-------~iV-g~~D~dp~k-----~g-~~i~gv~V~~~~dl~ell~~~I 141 (211)
T 2dt5_A 77 LNRKWGLCIVGMGRLG-SALADYPGFGESF-------ELR-GFFDVDPEK-----VG-RPVRGGVIEHVDLLPQRVPGRI 141 (211)
T ss_dssp TTSCEEEEEECCSHHH-HHHHHCSCCCSSE-------EEE-EEEESCTTT-----TT-CEETTEEEEEGGGHHHHSTTTC
T ss_pred cCCCCEEEEECccHHH-HHHHHhHhhcCCc-------EEE-EEEeCCHHH-----Hh-hhhcCCeeecHHhHHHHHHcCC
Confidence 3466789999998432 222221 33 222 344556652 22 334 4665 566777443456
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~ 305 (806)
|.+++ +.|.....++.+.|.+.|++.++.++.
T Consensus 142 D~ViI---A~Ps~~~~ei~~~l~~aGi~~Ilnf~P 173 (211)
T 2dt5_A 142 EIALL---TVPREAAQKAADLLVAAGIKGILNFAP 173 (211)
T ss_dssp CEEEE---CSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEE---eCCchhHHHHHHHHHHcCCCEEEECCc
Confidence 66555 667777789999999999999988764
No 161
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=77.95 E-value=0.92 Score=49.30 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=45.1
Q ss_pred cchhchHHHHHhhCCCCcccccccccccccCC-CHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 6 ISEATGKDIINRNLDPNTAAAKCRFAAVKEET-SWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 6 i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
...+..|++|.+++. |++ +..+ ++... ..+++.+....++ .++||||...-+. -+|.+..+.+|+++++
T Consensus 139 ~DK~~~k~~l~~~Gi--p~p-~~~~--~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss----~Gv~~v~~~~el~~a~ 208 (364)
T 3i12_A 139 MDKDVAKRLLRDAGL--NIA-PFIT--LTRTNRHAFSFAEVESRLG-LPLFVKPANQGSS----VGVSKVANEAQYQQAV 208 (364)
T ss_dssp HCHHHHHHHHHHTTC--CBC-CEEE--EETTTGGGCCHHHHHHHHC-SSEEEEETTCCTT----TTCEEESSHHHHHHHH
T ss_pred HCHHHHHHHHHHCCC--CCC-CEEE--EEccccchhhHHHHHHhcC-CCEEEEECCCCCC----cCeEEeCCHHHHHHHH
Confidence 346778999999988 776 4443 22222 0113333333454 5999999954332 3455567899999888
Q ss_pred HHHc
Q psy16953 85 SERM 88 (806)
Q Consensus 85 ~~~~ 88 (806)
++..
T Consensus 209 ~~a~ 212 (364)
T 3i12_A 209 ALAF 212 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 162
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=77.73 E-value=0.7 Score=48.38 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=41.3
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +..+ ++...+..+. ....++ .++||||...-+++| |.+..+.+|+++++++
T Consensus 97 dK~~~~~~l~~~Gi--p~p-~~~~--~~~~~~~~~~--~~~~~~-~P~vvKP~~~~~s~G----v~~v~~~~el~~~~~~ 164 (307)
T 3r5x_A 97 DKNISKKILRYEGI--ETP-DWIE--LTKMEDLNFD--ELDKLG-FPLVVKPNSGGSSVG----VKIVYDKDELISMLET 164 (307)
T ss_dssp CHHHHHHHHHHTTC--CCC-CEEE--EESSSCCCHH--HHHHHC-SSEEEEECC----CC----CEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC--CCC-CEEE--EeChhhhhHH--HHHhcC-CCEEEEeCCCCCCCC----EEEeCCHHHHHHHHHH
Confidence 34667889999988 666 4443 2222222210 122333 589999998666554 5566789999999887
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 165 ~~ 166 (307)
T 3r5x_A 165 VF 166 (307)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 163
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=77.72 E-value=3.9 Score=43.46 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=45.2
Q ss_pred cc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
++ ++|.|+++. -+.+|+++++|+.++....+-+++++. +| |.++|--. ....+..++|.++|+++|+.+.
T Consensus 50 ~~~~~~~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~-~G-khVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 50 DIPKAYGSYEEL-AKDPNVEVAYVGTQHPQHKAAVMLCLA-AG-KAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp TCSCEESSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHH-TT-CEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccCCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHh-cC-CEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 45 489999994 444455555556655555555555554 77 45555322 3455788899999999997653
No 164
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=76.89 E-value=3.7 Score=44.20 Aligned_cols=71 Identities=14% Similarity=-0.021 Sum_probs=44.6
Q ss_pred ccccccHHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 256 IPVYKKMEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 256 ~p~y~sv~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.++|.++++++.. .+|++++ ++ |.....+.+.+|.++|. .+++-- -....+..++|.++|+++|+.+ +|.+
T Consensus 57 ~~~~~~~~~ll~~~~~D~V~i--~t-p~~~h~~~~~~al~aGk-~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~ 130 (362)
T 1ydw_A 57 TKIHGSYESLLEDPEIDALYV--PL-PTSLHVEWAIKAAEKGK-HILLEKPVAMNVTEFDKIVDACEANGVQIMDGTM 130 (362)
T ss_dssp CEEESSHHHHHHCTTCCEEEE--CC-CGGGHHHHHHHHHTTTC-EEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CeeeCCHHHHhcCCCCCEEEE--cC-ChHHHHHHHHHHHHCCC-eEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4689999995443 3555444 55 55455555555555785 455422 1445577889999999999765 4444
No 165
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}
Probab=76.78 E-value=15 Score=40.24 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=63.1
Q ss_pred ceEEEEccChhH----HH-hhhhcccccccCCCcccceeEeecCC-Cccccc-ccceeecccccccHHHHhccCCCeeEE
Q psy16953 203 TKAIVWGMQTRA----VQ-SMLDFDFVCRRSEPSVAAMVYPFTGD-HKLKFY-WGHKEVLIPVYKKMEDAMSKNKDADVL 275 (806)
Q Consensus 203 t~v~V~G~~~r~----~~-~ll~~gf~~~~~~~~~~g~iypvnp~-~~~~~~-~g~~~i~~p~y~sv~daip~~~Dlavi 275 (806)
-+|+|+|+++-. ++ -|.++.| ...++..+..+ .++++. |+..++-+.-..+..+ + ..+|+++.
T Consensus 5 ~~VaIvGATG~vG~ellr~lL~~hp~--------~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~-~-~~vDvvf~ 74 (377)
T 3uw3_A 5 MNVGLVGWRGMVGSVLMQRMQEEGDF--------DLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDD-L-KKCDVIIT 74 (377)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGG--------GGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHH-H-HTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhhCCC--------CceEEEEEechhcCCCHHHcCCCceEEEeCCChhH-h-cCCCEEEE
Confidence 489999999764 45 4445555 13466665432 222321 2212211111123334 3 35777555
Q ss_pred EeecCChhhHHHHHHHhcCCCCCEEEEEc-CCC----------CHHHHHHHHHHHHHcCC-eEEccCcc
Q psy16953 276 VNFASLRSAYDSTIETLGFPQIRSIAIIA-EGI----------PENMTRKLNLLAKEKGV-SIIGPATV 332 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf----------~E~~~~~l~~~a~~~gi-riiGPN~~ 332 (806)
+.|.....+..+.+.++|+|.+||=. +.| ||--.+++ +.+++.++ .|..|||-
T Consensus 75 ---a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i-~~~~~~~i~~Ianp~C~ 139 (377)
T 3uw3_A 75 ---CQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI-KDALVNGTKNFIGGNCT 139 (377)
T ss_dssp ---CSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHH-HHHHHTTCCEEEECCHH
T ss_pred ---CCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHH-hhhhhcCCcEEEcCCHH
Confidence 88888878888888778986444444 334 23222233 34444676 57889883
No 166
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=76.71 E-value=3.5 Score=44.66 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=47.9
Q ss_pred ecc-cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE-Ec
Q psy16953 254 VLI-PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI-IG 328 (806)
Q Consensus 254 i~~-p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri-iG 328 (806)
.++ ++|.++++ +-+.+|+++++|+.++....+-+++++. +|.. ++ .+ ....+..++|.++|+++|+.+ +|
T Consensus 66 ~~~~~~~~~~~~-ll~~~~iD~V~i~tp~~~h~~~~~~al~-~Gk~-V~--~EKP~a~~~~~~~~l~~~a~~~~~~~~v~ 140 (383)
T 3oqb_A 66 FNIARWTTDLDA-ALADKNDTMFFDAATTQARPGLLTQAIN-AGKH-VY--CEKPIATNFEEALEVVKLANSKGVKHGTV 140 (383)
T ss_dssp TTCCCEESCHHH-HHHCSSCCEEEECSCSSSSHHHHHHHHT-TTCE-EE--ECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred hCCCcccCCHHH-HhcCCCCCEEEECCCchHHHHHHHHHHH-CCCe-EE--EcCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 355 48999999 5555556666666666666666666555 7854 44 33 455578889999999999753 44
Q ss_pred cC
Q psy16953 329 PA 330 (806)
Q Consensus 329 PN 330 (806)
.|
T Consensus 141 ~~ 142 (383)
T 3oqb_A 141 QD 142 (383)
T ss_dssp CG
T ss_pred ec
Confidence 43
No 167
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=76.67 E-value=8.9 Score=39.61 Aligned_cols=107 Identities=8% Similarity=0.027 Sum_probs=63.0
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+|.|+|.+. ...++|.+.|+ .|+-++++......+ .+.++.++.+..+++. ..|+.++ +++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~-~~Dvvi~--~vp 65 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-----------PLIIYDVFPDACKEF--QDAGEQVVSSPADVAE-KADRIIT--MLP 65 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-----------CEEEECSSTHHHHHH--HTTTCEECSSHHHHHH-HCSEEEE--CCS
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHH--HHcCCeecCCHHHHHh-cCCEEEE--eCC
Confidence 688999763 34677878776 455555542100000 0114667888888544 4566555 555
Q ss_pred ChhhHHHHHHHhc----CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE
Q psy16953 281 LRSAYDSTIETLG----FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 281 ~~~~~~~~le~~~----~~gvk~~viis~Gf~E~~~~~l~~~a~~~giri 326 (806)
....+..++++.. ...-..++|-++|+.....+++.+.+.+.+..+
T Consensus 66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~ 115 (296)
T 2gf2_A 66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVF 115 (296)
T ss_dssp SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 6667888887632 112234566688998877777777666655444
No 168
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=76.35 E-value=3.8 Score=37.53 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCCceEEEEccChhH---HHhhhhc-ccccccCCCcccceeEeecCCCcccccccceee-cccccccHHHHhc-----cC
Q psy16953 200 QEQTKAIVWGMQTRA---VQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-LIPVYKKMEDAMS-----KN 269 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~---~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~~p~y~sv~daip-----~~ 269 (806)
+..++++|+|.++.. ++.+.+. || ++.|-+ --++.. +| ..+ ++|+|. .++ ++ ..
T Consensus 2 ~~~~~vlIiGaG~~g~~l~~~l~~~~g~-------~vvg~~-d~~~~~-----~g-~~i~g~pV~g-~~~-l~~~~~~~~ 65 (141)
T 3nkl_A 2 NAKKKVLIYGAGSAGLQLANMLRQGKEF-------HPIAFI-DDDRKK-----HK-TTMQGITIYR-PKY-LERLIKKHC 65 (141)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHSSSE-------EEEEEE-CSCGGG-----TT-CEETTEEEEC-GGG-HHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCc-------EEEEEE-ECCccc-----CC-CEecCeEEEC-HHH-HHHHHHHCC
Confidence 466789999998754 4444433 55 233422 223321 12 233 467765 444 33 24
Q ss_pred CCeeEEEeecCCh---hhHHHHHHHhcCCCCC
Q psy16953 270 KDADVLVNFASLR---SAYDSTIETLGFPQIR 298 (806)
Q Consensus 270 ~Dlavivi~~~~~---~~~~~~le~~~~~gvk 298 (806)
+|.+++ +.|. .....+++.|.+.|++
T Consensus 66 id~vii---a~~~~~~~~~~~i~~~l~~~gv~ 94 (141)
T 3nkl_A 66 ISTVLL---AVPSASQVQKKVIIESLAKLHVE 94 (141)
T ss_dssp CCEEEE---CCTTSCHHHHHHHHHHHHTTTCE
T ss_pred CCEEEE---eCCCCCHHHHHHHHHHHHHcCCe
Confidence 554444 3332 2345666677667766
No 169
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=76.31 E-value=2.6 Score=45.58 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=43.5
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
+.-..++.+++. ..|++|. +.|+..-..++++|.+.|+..+= +| +.++ .+++|.+.|+++|++++
T Consensus 65 ~~d~~~l~~~~~-~~DvVi~---~~p~~~~~~v~~~~~~~g~~yvD-~s-~~~~-~~~~l~~~a~~~g~~~i 129 (365)
T 3abi_A 65 ASNFDKLVEVMK-EFELVIG---ALPGFLGFKSIKAAIKSKVDMVD-VS-FMPE-NPLELRDEAEKAQVTIV 129 (365)
T ss_dssp TTCHHHHHHHHT-TCSEEEE---CCCGGGHHHHHHHHHHHTCEEEE-CC-CCSS-CGGGGHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHh-CCCEEEE---ecCCcccchHHHHHHhcCcceEe-ee-ccch-hhhhhhhhhccCCceee
Confidence 334556777444 4566444 45666677899999999987443 33 3333 45677888999999888
No 170
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=75.99 E-value=3.8 Score=45.54 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=42.1
Q ss_pred ccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeE
Q psy16953 258 VYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSI 326 (806)
Q Consensus 258 ~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~giri 326 (806)
+|.+.++ +-+.+|+++++|++++....+-+++++ ++|. .++|-- -....+..++|.+.|+++|+.+
T Consensus 138 ~~~~~~~-ll~~~~vD~V~iatp~~~h~~~~~~al-~aGk-~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 204 (433)
T 1h6d_A 138 DYSNFDK-IAKDPKIDAVYIILPNSLHAEFAIRAF-KAGK-HVMCEKPMATSVADCQRMIDAAKAANKKL 204 (433)
T ss_dssp CSSSGGG-GGGCTTCCEEEECSCGGGHHHHHHHHH-HTTC-EEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred ccCCHHH-HhcCCCCCEEEEcCCchhHHHHHHHHH-HCCC-cEEEcCCCCCCHHHHHHHHHHHHHhCCeE
Confidence 7999999 554444555555555555555555544 4775 454421 2445577889999999999765
No 171
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=75.74 E-value=3 Score=45.00 Aligned_cols=77 Identities=16% Similarity=0.016 Sum_probs=48.6
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+..|++|.+++. |++ +... ++..++.+.+.+....|+ .|+||||-.--+++ +|.+..+.+|.++++++.
T Consensus 140 K~~~k~~l~~~Gi--p~p-~~~~--~~~~~~~~~~~~~~~~lg-~PvvVKP~~gg~s~----Gv~~v~~~~el~~~~~~a 209 (357)
T 4fu0_A 140 KDRAHKLVSLAGI--SVP-KSVT--FKRFNEEAAMKEIEANLT-YPLFIKPVRAGSSF----GITKVIEKQELDAAIELA 209 (357)
T ss_dssp HHHHHHHHHHTTC--BCC-CEEE--EEGGGHHHHHHHHHHHCC-SSEEEEETTCSSST----TCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CEEe--ecCCChHHHHHHHHHhcC-CCEEEEECCCCCCC----ceEEeccHHhHHHHHHHH
Confidence 4567899999988 766 4433 221222222334445666 79999998754444 366677899999888776
Q ss_pred cCCeeEE
Q psy16953 88 MGKDQVV 94 (806)
Q Consensus 88 ~g~~i~~ 94 (806)
...+-++
T Consensus 210 ~~~~~~v 216 (357)
T 4fu0_A 210 FEHDTEV 216 (357)
T ss_dssp TTTCSEE
T ss_pred hccCCeE
Confidence 5544333
No 172
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=75.05 E-value=8.8 Score=39.93 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=57.4
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
+.+|.|+|.+. ...++|.+.||- ...|+-.+++...-..+ .+..++.++.+..+++ +..|+.++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~--------~~~V~v~dr~~~~~~~l-~~~~gi~~~~~~~~~~-~~aDvVil--- 69 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYD--------PNRICVTNRSLDKLDFF-KEKCGVHTTQDNRQGA-LNADVVVL--- 69 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCC--------GGGEEEECSSSHHHHHH-HHTTCCEEESCHHHHH-SSCSEEEE---
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCC--------CCeEEEEeCCHHHHHHH-HHHcCCEEeCChHHHH-hcCCeEEE---
Confidence 35799999863 247788887760 23566666652100000 0112567788888854 44676555
Q ss_pred cCChhhHHHHHHHhcCC--CCC-EEEEEcCCCCHH
Q psy16953 279 ASLRSAYDSTIETLGFP--QIR-SIAIIAEGIPEN 310 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~~--gvk-~~viis~Gf~E~ 310 (806)
++++..+.++++++... .-+ .+|-+++|++-.
T Consensus 70 av~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~ 104 (280)
T 3tri_A 70 AVKPHQIKMVCEELKDILSETKILVISLAVGVTTP 104 (280)
T ss_dssp CSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHH
T ss_pred EeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHH
Confidence 55778888888887521 223 455567899853
No 173
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=74.54 E-value=10 Score=39.91 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=38.9
Q ss_pred cccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC--CCCHHHHHHHHHHHHHcCCe-EEc
Q psy16953 259 YKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE--GIPENMTRKLNLLAKEKGVS-IIG 328 (806)
Q Consensus 259 y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~--Gf~E~~~~~l~~~a~~~gir-iiG 328 (806)
|.++.+ . ..+|++++ ++|.....+.+++|.++|.. +++-.. +...+..++|.+.|++.|+. ++|
T Consensus 57 ~~~l~~-~-~~~DvVii---atp~~~h~~~~~~al~aG~~-Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~ 123 (304)
T 3bio_A 57 VSDIEQ-L-ESVDVALV---CSPSREVERTALEILKKGIC-TADSFDIHDGILALRRSLGDAAGKSGAAAVIA 123 (304)
T ss_dssp ESSGGG-S-SSCCEEEE---CSCHHHHHHHHHHHHTTTCE-EEECCCCGGGHHHHHHHHHHHHHHHTCEEECS
T ss_pred HHHHHh-C-CCCCEEEE---CCCchhhHHHHHHHHHcCCe-EEECCCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 555555 3 34565555 55655555666666668865 444322 33346778899999999964 344
No 174
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=74.49 E-value=2.3 Score=43.66 Aligned_cols=86 Identities=29% Similarity=0.385 Sum_probs=51.6
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-C-Ccch-HHHHHH
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEV-G-GVEE-YEVCAA 436 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Ei-g-g~~d-~~f~~a 436 (806)
..+|++|.-+|.+...-- .. + .. |...+.--++.+.|+.+.+||++|+|++.++- | ++.. ..+.++
T Consensus 2 ~~~iavi~i~G~I~~~~~----~~--~---~~--~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~ 70 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGD----SS--S---LL--GADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKK 70 (240)
T ss_dssp CCEEEEEEEESCBCCC--------------------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHH
T ss_pred CCeEEEEEEEEEEcCCCC----cC--c---cc--ccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 356888888887643210 00 1 11 11211122466677778889999999999983 2 2233 556666
Q ss_pred HHhcC--CCCCEEEEEeCcCcC
Q psy16953 437 LKDKR--ITKPLVAWCIGTCAS 456 (806)
Q Consensus 437 ~r~~~--~~KPVV~lk~Grs~~ 456 (806)
+++.+ .+||||+...|.+..
T Consensus 71 l~~~~~~~~kPVia~v~g~a~~ 92 (240)
T 3rst_A 71 LEEIKKETKKPIYVSMGSMAAS 92 (240)
T ss_dssp HHHHHHHHCCCEEEEEEEEEET
T ss_pred HHHHHHhCCCeEEEEECCeehH
Confidence 66654 489999988776653
No 175
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=74.41 E-value=22 Score=38.90 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=61.6
Q ss_pred eEEEEccChhH----HH-hhhhcccccccCCCcccceeEeecCC-Cccccc-ccceeecccccccHHHHhccCCCeeEEE
Q psy16953 204 KAIVWGMQTRA----VQ-SMLDFDFVCRRSEPSVAAMVYPFTGD-HKLKFY-WGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 204 ~v~V~G~~~r~----~~-~ll~~gf~~~~~~~~~~g~iypvnp~-~~~~~~-~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
+|+|+|++|-. ++ -|.++.| ...++..+..+ .++++. |+..++-+.-..+..+ + ..+|+++.
T Consensus 2 ~VaIvGATG~vG~ellr~lL~~hp~--------~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~-~-~~~Dvvf~- 70 (370)
T 3pzr_A 2 RVGLVGWRGMVGSVLMQRMVEERDF--------DLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIES-L-KQLDAVIT- 70 (370)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTGG--------GGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHH-H-TTCSEEEE-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCC--------CceEEEEEeccccCcCHHHhCCCceEEEecCChhH-h-ccCCEEEE-
Confidence 68999999764 45 4445555 13455555432 333321 2212111111123344 3 45776555
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEcC-CC----------CHHHHHHHHHHHHHcCC-eEEccCc
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIAE-GI----------PENMTRKLNLLAKEKGV-SIIGPAT 331 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis~-Gf----------~E~~~~~l~~~a~~~gi-riiGPN~ 331 (806)
+.|.....+..+.+.++|+|.+||=.+ .| || .-++-++.++++++ .|..|||
T Consensus 71 --a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpe-vN~~~i~~~~~~~i~~Ianp~C 134 (370)
T 3pzr_A 71 --CQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDP-VNLKQILHGIHHGTKTFVGGNC 134 (370)
T ss_dssp --CSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHH-HHHHHHHHHHHTTCCEEEECCH
T ss_pred --CCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEccc-CCHHHHhhhhhcCCcEEEcCCh
Confidence 888888788888777789865554444 33 23 22233334444676 4778988
No 176
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=73.90 E-value=10 Score=39.77 Aligned_cols=110 Identities=9% Similarity=0.014 Sum_probs=63.2
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
..+|.|+|.+.- ..++|.+.|+ .|+-++++......+ .+.++.++.+..+++. ..|+.++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~-~~DvVi~--- 92 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGH-----------TVTVWNRTAEKCDLF--IQEGARLGRTPAEVVS-TCDITFA--- 92 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSGGGGHHH--HHTTCEECSCHHHHHH-HCSEEEE---
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-----------EEEEEeCCHHHHHHH--HHcCCEEcCCHHHHHh-cCCEEEE---
Confidence 357999997632 3667777776 355555432100000 0124566778888543 4676555
Q ss_pred cCC-hhhHHHHHHHhc----CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 279 ASL-RSAYDSTIETLG----FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 279 ~~~-~~~~~~~le~~~----~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++| ...+..++++.. ...-..++|..+.......+++.+.+.+.++++++
T Consensus 93 av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~ 147 (316)
T 2uyy_A 93 CVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 147 (316)
T ss_dssp CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 455 777888876531 12223455545556555566677777667777774
No 177
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=73.90 E-value=2.5 Score=45.33 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=45.7
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +..+ ++ +.+ ......++ .++||||..--+.+| |.+..+.+|+++++++
T Consensus 132 dK~~~k~~l~~~Gi--p~p-~~~~--~~---~~~--~~~~~~lg-~PvvvKP~~~~~s~G----v~~v~~~~el~~a~~~ 196 (346)
T 3se7_A 132 DKSLTYLVARSAGI--ATP-NFWT--VT---ADE--KIPTDQLT-YPVFVKPARSGSSFG----VSKVAREEDLQGAVEA 196 (346)
T ss_dssp SHHHHHHHHHHTTC--BCC-CEEE--EE---TTS--CCCTTTCC-SSEEEEESSCCTTTT----CEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc--CcC-CEEE--Ec---CcH--HHHHHhcC-CCEEEEeCCCCCCcC----EEEECCHHHHHHHHHH
Confidence 45678899999988 766 4443 22 111 12233444 599999987665443 5556689999999988
Q ss_pred HcCCe
Q psy16953 87 RMGKD 91 (806)
Q Consensus 87 ~~g~~ 91 (806)
....+
T Consensus 197 ~~~~~ 201 (346)
T 3se7_A 197 AREYD 201 (346)
T ss_dssp HTTTC
T ss_pred HHhCC
Confidence 76443
No 178
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=73.60 E-value=2.3 Score=46.73 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=45.2
Q ss_pred chhchHHHHHhhC-CCCcccccccccccccCCCH-HHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 7 SEATGKDIINRNL-DPNTAAAKCRFAAVKEETSW-AELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 7 ~Ey~~K~ll~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
..+..|++|.+++ . |++ +..+ ++...+. +++.+....++ .++||||...-+.+ +|.+..|.+|+++++
T Consensus 161 DK~~~k~~l~~~G~I--pvp-~~~~--~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~el~~al 230 (383)
T 3k3p_A 161 DKITTNQVLESATTI--PQV-AYVA--LIEGEPLESKLAEVEEKLI-YPVFVKPANMGSSV----GISKAENRTDLKQAI 230 (383)
T ss_dssp CHHHHHHHHHHHCCC--CBC-CEEE--EETTSCHHHHHHHHHHHCC-SSEEEEECC----------CEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhCCCc--CCC-CEEE--EeCccchhHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHH
Confidence 4567889999998 7 666 4433 3333344 45555555665 69999998765433 355667899999888
Q ss_pred HHHc
Q psy16953 85 SERM 88 (806)
Q Consensus 85 ~~~~ 88 (806)
++..
T Consensus 231 ~~a~ 234 (383)
T 3k3p_A 231 ALAL 234 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 179
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=73.36 E-value=2.9 Score=45.69 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=40.8
Q ss_pred hHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcC
Q psy16953 11 GKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMG 89 (806)
Q Consensus 11 ~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g 89 (806)
.|++|.+++. |.+ + . .++++++ ..|+||||+-+-++|| |.+..|.+|+++.+++.+.
T Consensus 128 ~k~~l~~~GI--ptp-~--~-----~~~~~e~--------~~PvVVK~~~~a~GkG----v~v~~s~ee~~~a~~~~~~ 184 (361)
T 2r7k_A 128 EGKLLREAGL--RVP-K--K-----YESPEDI--------DGTVIVKFPGARGGRG----YFIASSTEEFYKKAEDLKK 184 (361)
T ss_dssp HHHHHHHTTC--CCC-C--E-----ESSGGGC--------CSCEEEECSCCCC-------EEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCc--CCC-C--E-----eCCHHHc--------CCCEEEeeCCCCCCCC----EEEECCHHHHHHHHHHHHh
Confidence 5788899977 554 2 2 2356655 2599999999987665 7888899999998887753
No 180
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=72.41 E-value=29 Score=35.69 Aligned_cols=88 Identities=16% Similarity=0.007 Sum_probs=51.3
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--cccccccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y~sv~daip~~~Dlaviv 276 (806)
.+|+|.|.++-. ++.|++.|+ .|+-+..+......-+.+.+ .+. ..++.+++ +.+|..+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----------~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~-~~~d~Vi-- 67 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGN-----------TPIILTRSIGNKAINDYEYRVSDYT-LEDLINQL-NDVDAVV-- 67 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEESCCC-----CCEEEECCCC-HHHHHHHT-TTCSEEE--
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-----------EEEEEeCCCCcccCCceEEEEcccc-HHHHHHhh-cCCCEEE--
Confidence 479999988764 677888776 34444332100000011222 266 77888854 4566543
Q ss_pred eecCCh-------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 277 NFASLR-------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 277 i~~~~~-------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
.++... .....++++|.+.|++.+|.+|+
T Consensus 68 h~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS 109 (311)
T 3m2p_A 68 HLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST 109 (311)
T ss_dssp ECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 344321 12357889998889998888886
No 181
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=72.10 E-value=2.8 Score=52.33 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=47.4
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|++|.+++. |++ +... .++.+|+.+....++ .++||||....++|| |.+..|.+|+++++++.+
T Consensus 676 ~~~~~ll~~~GI--p~P-~~~~-----~~s~eea~~~~~~ig-~PvvVKP~~~~gG~G----v~iv~~~~el~~~~~~a~ 742 (1073)
T 1a9x_A 676 ERFQHAVERLKL--KQP-ANAT-----VTAIEMAVEKAKEIG-YPLVVRASYVLGGRA----MEIVYDEADLRRYFQTAV 742 (1073)
T ss_dssp HHHHHHHHHHTC--CCC-CEEE-----CCSHHHHHHHHHHHC-SSEEEEC-------C----EEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCc--CCC-CceE-----ECCHHHHHHHHHHcC-CCEEEEECCCCCCCC----eEEECCHHHHHHHHHHHH
Confidence 456788888877 666 5555 678899887777776 699999999988874 777889999999998764
No 182
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=71.56 E-value=10 Score=42.77 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=59.5
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcc--ccc--ccce--eecccccccHHHHhcc--CCCe
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL--KFY--WGHK--EVLIPVYKKMEDAMSK--NKDA 272 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~--~~~--~g~~--~i~~p~y~sv~daip~--~~Dl 272 (806)
+|.|+|++. ....+|.+.|| .|+-++.+... ++. +|.. .-.+..+.++++++.. .+|+
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~-----------~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGF-----------KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRK 71 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCE
T ss_pred EEEEEChHHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCE
Confidence 688999763 34678888887 35555543110 000 0100 0015567888885543 4776
Q ss_pred eEEEeecCChhhHHHHHHHhc---CCCCCEEEEE-cCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 273 DVLVNFASLRSAYDSTIETLG---FPQIRSIAII-AEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~---~~gvk~~vii-s~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
.++ ++++...++++++++. ..| .+||- +.|.+ ...+++.+.+.+.|+++++
T Consensus 72 Vil--aVp~~~~v~~vl~~l~~~l~~g--~iIId~sng~~-~~~~~l~~~l~~~g~~~v~ 126 (478)
T 1pgj_A 72 ALI--LVQAGAATDSTIEQLKKVFEKG--DILVDTGNAHF-KDQGRRAQQLEAAGLRFLG 126 (478)
T ss_dssp EEE--CCCCSHHHHHHHHHHHHHCCTT--CEEEECCCCCH-HHHHHHHHHHHTTTCEEEE
T ss_pred EEE--ecCChHHHHHHHHHHHhhCCCC--CEEEECCCCCh-HHHHHHHHHHHHCCCeEEE
Confidence 555 4444357888877653 233 34443 44544 3445555666666776654
No 183
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=71.25 E-value=2.9 Score=48.12 Aligned_cols=74 Identities=7% Similarity=-0.071 Sum_probs=51.1
Q ss_pred chhchHHHHHhhCCCCcccccccccc------------------------cccCCCHHHHHhccccccCCCeEEccCccc
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAA------------------------VKEETSWAELVRNEPWLESSKLVAKPDQLI 62 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~ 62 (806)
..+.+|+++.+++. |++ +..... -....|.+++.+....++ .|+||||..--
T Consensus 164 DK~~~k~ll~~~GV--Pvp-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~ig-yPvVVKp~~gg 239 (540)
T 3glk_A 164 DKIASTVVAQTLQV--PTL-PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG-FPLMIKASEGG 239 (540)
T ss_dssp CHHHHHHHHHHTTC--CBC-CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHC-SSEEEEETTCC
T ss_pred CHHHHHHHHHHcCC--CCC-CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcC-CcEEEEECCCC
Confidence 35678999999988 665 433200 012568899888777787 69999999877
Q ss_pred cccCccCceeecCCHHHHHHHHHHHc
Q psy16953 63 KRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 63 ~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
++|| |.+..+.+|+++++++..
T Consensus 240 GG~G----v~iv~~~~eL~~a~~~~~ 261 (540)
T 3glk_A 240 GGKG----IRKAESAEDFPILFRQVQ 261 (540)
T ss_dssp --------EEEECSTTTHHHHHHHHH
T ss_pred CCCC----EEEECCHHHHHHHHHHHH
Confidence 6664 667778899888887654
No 184
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=70.68 E-value=3.6 Score=43.86 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=46.3
Q ss_pred ccccccHHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCeE-EccC
Q psy16953 256 IPVYKKMEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE---GIPENMTRKLNLLAKEKGVSI-IGPA 330 (806)
Q Consensus 256 ~p~y~sv~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~---Gf~E~~~~~l~~~a~~~giri-iGPN 330 (806)
.++|.++++.+.. .+|+++| +.++....+-+++++. +|.. ++ .+ ....++.++|.++|+++|+.+ +..+
T Consensus 53 ~~~~~~~~~ll~~~~vD~V~I--~tp~~~H~~~~~~al~-aGkh-Vl--~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~ 126 (337)
T 3ip3_A 53 PKKYNNWWEMLEKEKPDILVI--NTVFSLNGKILLEALE-RKIH-AF--VEKPIATTFEDLEKIRSVYQKVRNEVFFTAM 126 (337)
T ss_dssp CEECSSHHHHHHHHCCSEEEE--CSSHHHHHHHHHHHHH-TTCE-EE--ECSSSCSSHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CcccCCHHHHhcCCCCCEEEE--eCCcchHHHHHHHHHH-CCCc-EE--EeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Confidence 4789999995553 4565554 5544444454555554 8854 33 44 344478889999999999763 3444
Q ss_pred ccccccC
Q psy16953 331 TVGGLKP 337 (806)
Q Consensus 331 ~~Gii~p 337 (806)
..--++|
T Consensus 127 ~~~R~~p 133 (337)
T 3ip3_A 127 FGIRYRP 133 (337)
T ss_dssp CGGGGSH
T ss_pred ccccCCH
Confidence 3333334
No 185
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=69.84 E-value=4.4 Score=43.67 Aligned_cols=69 Identities=13% Similarity=-0.053 Sum_probs=43.9
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHH-------HHHhccccccCCCeEEccCccccccCccCceeecCCHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWA-------ELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGA 80 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~ 80 (806)
.+..|++|.+++. |++ +... + ++.+ ++.+....++ .++||||...-+.+ +|.+..+.+|+
T Consensus 130 K~~~k~~l~~~Gi--p~p-~~~~--~---~~~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el 196 (364)
T 2i87_A 130 KLVMKQLFEHRGL--PQL-PYIS--F---LRSEYEKYEHNILKLVNDKLN-YPVFVKPANLGSSV----GISKCNNEAEL 196 (364)
T ss_dssp HHHHHHHHHHHTC--CCC-CEEE--E---EHHHHHHHHHHHHHHHHHHCC-SSEEEEESSCSSCT----TCEEESSHHHH
T ss_pred HHHHHHHHHHCCC--CCC-CEEE--E---echhhcccchhHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHH
Confidence 4556888888877 665 4333 1 1222 2333223344 59999999877655 35666689999
Q ss_pred HHHHHHHcC
Q psy16953 81 QSWISERMG 89 (806)
Q Consensus 81 ~~~~~~~~g 89 (806)
++++++...
T Consensus 197 ~~a~~~~~~ 205 (364)
T 2i87_A 197 KEGIKEAFQ 205 (364)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999887653
No 186
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=69.78 E-value=10 Score=39.30 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=60.1
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
..+|.|+|.+. ...++|.+.|+ .|+-++++......+ .+-++..+.+..+++. ..|+.++ +
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~-~~D~vi~--~ 67 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGV-----------TVYAFDLMEANVAAV--VAQGAQACENNQKVAA-ASDIIFT--S 67 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTC-----------EEEEECSSHHHHHHH--HTTTCEECSSHHHHHH-HCSEEEE--C
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-----------eEEEEeCCHHHHHHH--HHCCCeecCCHHHHHh-CCCEEEE--E
Confidence 35799999763 23667777776 455555432100000 0014667888888544 4666555 5
Q ss_pred cCChhhHHHHHH---Hh---cCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 279 ASLRSAYDSTIE---TL---GFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 279 ~~~~~~~~~~le---~~---~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
++....+..++. ++ ...| +.++.++.|.++ ..+++.+.+.+.+++++
T Consensus 68 vp~~~~~~~v~~~~~~l~~~l~~~-~~vv~~~~~~~~-~~~~l~~~~~~~g~~~~ 120 (301)
T 3cky_A 68 LPNAGIVETVMNGPGGVLSACKAG-TVIVDMSSVSPS-STLKMAKVAAEKGIDYV 120 (301)
T ss_dssp CSSHHHHHHHHHSTTCHHHHSCTT-CEEEECCCCCHH-HHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHH-HHHHHHHHHHHcCCeEE
Confidence 545566777764 22 2233 234445566643 34556666666677766
No 187
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=69.75 E-value=6.9 Score=41.84 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=43.8
Q ss_pred cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHH---HHHcCCeE-EccC
Q psy16953 257 PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLL---AKEKGVSI-IGPA 330 (806)
Q Consensus 257 p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~---a~~~giri-iGPN 330 (806)
++|.+.++ +=+.+|+++++|+.|+....+-+++++. +|. .++|==. ....++.++|.++ ++++|+.+ +|-|
T Consensus 62 ~~~~d~~~-ll~~~~iDaV~I~tP~~~H~~~~~~al~-aGk-hVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~ 137 (390)
T 4h3v_A 62 TTETDWRT-LLERDDVQLVDVCTPGDSHAEIAIAALE-AGK-HVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFT 137 (390)
T ss_dssp EEESCHHH-HTTCTTCSEEEECSCGGGHHHHHHHHHH-TTC-EEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECG
T ss_pred cccCCHHH-HhcCCCCCEEEEeCChHHHHHHHHHHHH-cCC-CceeecCcccchhHHHHHHHHHHHHHhcCCceEEEee
Confidence 58999999 5455566666667766666676776666 774 4544211 3333566677444 66678654 4443
No 188
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=69.65 E-value=3.7 Score=47.77 Aligned_cols=73 Identities=7% Similarity=-0.072 Sum_probs=52.8
Q ss_pred hhchHHHHHhhCCCCccccccccc-----------------c-------cccCCCHHHHHhccccccCCCeEEccCcccc
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFA-----------------A-------VKEETSWAELVRNEPWLESSKLVAKPDQLIK 63 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~-----------------~-------~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~ 63 (806)
.+.+|+++.+++. |++ +.... . -...+|.+++.+....++ .++||||..--|
T Consensus 181 K~~ak~ll~~aGV--Pvp-p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iG-yPvVVKp~~GgG 256 (587)
T 3jrx_A 181 KIASTVVAQTLQV--PTL-PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG-FPLMIKASEGGG 256 (587)
T ss_dssp HHHHHHHHHHTTC--CBC-CBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHC-SSEEEEETTCCS
T ss_pred HHHHHHHHHHcCC--CCC-CeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence 4678899999988 665 43320 0 012578899888777887 799999998777
Q ss_pred ccCccCceeecCCHHHHHHHHHHHc
Q psy16953 64 RRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 64 ~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+|| |.+..+.+|+++.+++..
T Consensus 257 GkG----v~iV~s~eEL~~a~~~a~ 277 (587)
T 3jrx_A 257 GKG----IRKAESAEDFPILFRQVQ 277 (587)
T ss_dssp SSS----EEEECSTTTHHHHHHHHH
T ss_pred CCC----eEEeCCHHHHHHHHHHHH
Confidence 664 677778888888877654
No 189
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=69.33 E-value=3.7 Score=44.70 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=46.1
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
-+..|++|.+++. |++ +..+ ++ ..+++++.+ ...++ .++||||...-+.+| |.+..+.+|+++++++.
T Consensus 150 K~~~k~~l~~~Gi--p~p-~~~~--~~-~~~~~~~~~-~~~lg-~PvvVKP~~g~ss~G----v~~v~~~~el~~a~~~~ 217 (367)
T 2pvp_A 150 KYLTKLYAKDLGI--KTL-DYVL--LN-EKNRANALD-LMNFN-FPFIVKPSNAGSSLG----VNVVKEEKELIYALDSA 217 (367)
T ss_dssp HHHHHHHHHHHTC--BCC-CCEE--EC-TTTGGGHHH-HCCSC-SCEEEEESSCCTTTT----CEEESSTTSHHHHHHHH
T ss_pred HHHHHHHHHHCCc--CCC-CEEE--Ee-CCchHHHHH-HhccC-CCEEEEECCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 4567889999988 666 4443 11 123335554 44555 699999988765543 45556789999988877
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
..
T Consensus 218 ~~ 219 (367)
T 2pvp_A 218 FE 219 (367)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 190
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=69.33 E-value=7.7 Score=43.13 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=45.5
Q ss_pred ccccc----cHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCeE-Ecc
Q psy16953 256 IPVYK----KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIA-EGIPENMTRKLNLLAKEKGVSI-IGP 329 (806)
Q Consensus 256 ~p~y~----sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis-~Gf~E~~~~~l~~~a~~~giri-iGP 329 (806)
.++|. ++++. -+.+|+++++|+.++....+-+++++. +|. .++|-- -....++.++|.+.|+++|+.+ +|-
T Consensus 73 ~~~~~~~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~-aGk-hV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 149 (444)
T 2ixa_A 73 AKVFGNGNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMK-AGK-IVGMEVSGAITLEECWDYVKVSEQTGVPLMALE 149 (444)
T ss_dssp CEEECSSTTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHH-TTC-EEEECCCCCSSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CceeccCCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHH-CCC-eEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 46798 99994 444455555556666655666666665 774 444421 1234467889999999999765 444
Q ss_pred C
Q psy16953 330 A 330 (806)
Q Consensus 330 N 330 (806)
|
T Consensus 150 ~ 150 (444)
T 2ixa_A 150 N 150 (444)
T ss_dssp G
T ss_pred c
Confidence 4
No 191
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=69.02 E-value=3.8 Score=44.40 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=62.9
Q ss_pred ceEEEEccC---hhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc---CCCeeEEE
Q psy16953 203 TKAIVWGMQ---TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK---NKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~---~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~---~~Dlaviv 276 (806)
.+|.|+|.+ +...++|.+.|| .|+-.+++...-.. ..+.|+.++.++.+++.+ ..|+.++
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~-----------~V~~~dr~~~~~~~--a~~~G~~~~~~~~e~~~~a~~~aDlVil- 74 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANH-----------SVFGYNRSRSGAKS--AVDEGFDVSADLEATLQRAAAEDALIVL- 74 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-----------CEEEECSCHHHHHH--HHHTTCCEESCHHHHHHHHHHTTCEEEE-
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-----------EEEEEeCCHHHHHH--HHHcCCeeeCCHHHHHHhcccCCCEEEE-
Confidence 479999976 234678888887 56666665210000 012245556788875543 3677665
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++|...+.++++++....-..+|+-.++......+++.+... +.+++|
T Consensus 75 --avP~~~~~~vl~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~ 122 (341)
T 3ktd_A 75 --AVPMTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVG 122 (341)
T ss_dssp --CSCHHHHHHHHHHHHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEEC
T ss_pred --eCCHHHHHHHHHHHHccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEec
Confidence 666778888887765322234566667777654444443321 356665
No 192
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=68.58 E-value=4 Score=44.61 Aligned_cols=73 Identities=8% Similarity=-0.080 Sum_probs=44.3
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHH-HHHhccccccCCC-eEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWA-ELVRNEPWLESSK-LVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wl~~~~-~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
.-+..|++|.+++. |++ +..+ ++.....+ .+......++ .| +||||...-+.+| |.+..+.+|+++++
T Consensus 140 DK~~~k~~l~~~GI--p~p-~~~~--~~~~~~~~~~~~~~~~~lg-~P~vvVKP~~ggss~G----v~~v~~~~eL~~a~ 209 (372)
T 3tqt_A 140 EKDLTKTVLRAGGI--PVV-DWHT--LSPRDATEGVYQRLLDRWG-TSELFVKAVSLGSSVA----TLPVKTETEFTKAV 209 (372)
T ss_dssp SHHHHHHHHHHTTC--CBC-CCEE--ECTTSCCTTHHHHHHHHC----CEEEEESSCCSGGG----EEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHCCc--CCC-CEEE--EechhhhhhHHHHHHHhcC-CCeEEEEECCCCCCCC----EEEECCHHHHHHHH
Confidence 34567899999988 776 4443 22222111 1222233454 57 9999997655444 67778999999998
Q ss_pred HHHcC
Q psy16953 85 SERMG 89 (806)
Q Consensus 85 ~~~~g 89 (806)
++...
T Consensus 210 ~~a~~ 214 (372)
T 3tqt_A 210 KEVFR 214 (372)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87653
No 193
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=68.52 E-value=4.1 Score=42.13 Aligned_cols=67 Identities=13% Similarity=-0.018 Sum_probs=41.4
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHh--------ccccccCCCeEEccCccccccCccCceeecCCHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVR--------NEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKG 79 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e 79 (806)
.+..|++|.+++. |++ +... .++. ++.+ ....++ .++||||..--+++| |.+..+.+|
T Consensus 97 K~~~~~~l~~~gi--~~p-~~~~-----~~~~-~~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~~~g----v~~v~~~~e 162 (306)
T 1iow_A 97 KLRSKLLWQGAGL--PVA-PWVA-----LTRA-EFEKGLSDKQLAEISALG-LPVIVKPSREGSSVG----MSKVVAENA 162 (306)
T ss_dssp HHHHHHHHHHTTC--CBC-CEEE-----EEHH-HHHHCCCTHHHHHHHTTC-SSEEEEETTCCTTTT----CEEESSGGG
T ss_pred HHHHHHHHHHCCC--CCC-CeEE-----Echh-hhhccchhhhhhHHhccC-CCEEEEeCCCCCCCC----EEEeCCHHH
Confidence 3456778888877 655 3333 1222 3322 122233 499999998766553 555568899
Q ss_pred HHHHHHHHc
Q psy16953 80 AQSWISERM 88 (806)
Q Consensus 80 ~~~~~~~~~ 88 (806)
+++++++..
T Consensus 163 l~~~~~~~~ 171 (306)
T 1iow_A 163 LQDALRLAF 171 (306)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988765
No 194
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=68.22 E-value=28 Score=37.89 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=61.0
Q ss_pred eEEEEccChhH----HH-hhhhcccccccCCCcccceeEeecCC-Cccccc-ccceeecccccc--cHHHHhccCCCeeE
Q psy16953 204 KAIVWGMQTRA----VQ-SMLDFDFVCRRSEPSVAAMVYPFTGD-HKLKFY-WGHKEVLIPVYK--KMEDAMSKNKDADV 274 (806)
Q Consensus 204 ~v~V~G~~~r~----~~-~ll~~gf~~~~~~~~~~g~iypvnp~-~~~~~~-~g~~~i~~p~y~--sv~daip~~~Dlav 274 (806)
+|+|+|++|+. ++ -|.+.+| + .-.|+.+..+ +++++- ++... +.+.. +.++ + ..+|+++
T Consensus 3 kVaIvGAtG~vG~~llr~ll~~~~~------~--~v~i~~~~~~s~G~~v~~~~g~~--i~~~~~~~~~~-~-~~~DvVf 70 (367)
T 1t4b_A 3 NVGFIGWRGMVGSVLMQRMVEERDF------D--AIRPVFFSTSQLGQAAPSFGGTT--GTLQDAFDLEA-L-KALDIIV 70 (367)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTGG------G--GSEEEEEESSSTTSBCCGGGTCC--CBCEETTCHHH-H-HTCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCC------C--eEEEEEEEeCCCCCCccccCCCc--eEEEecCChHH-h-cCCCEEE
Confidence 79999988876 34 2333444 1 2355555443 222221 11111 22222 3444 4 3577655
Q ss_pred EEeecCChhhHHHHHHHhcCCCCCEEEEEcCC-C----------CHHHHHHHHHHHHHcCC-eEEccCcc
Q psy16953 275 LVNFASLRSAYDSTIETLGFPQIRSIAIIAEG-I----------PENMTRKLNLLAKEKGV-SIIGPATV 332 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~gvk~~viis~G-f----------~E~~~~~l~~~a~~~gi-riiGPN~~ 332 (806)
. +.|.....+..+.+.++|+|.+||=.++ | ||--.+++. -++..|+ .|..|||-
T Consensus 71 ~---a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~-~~~~~g~~~Ianp~Ct 136 (367)
T 1t4b_A 71 T---CQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT-DGLNNGIRTFVGGNCT 136 (367)
T ss_dssp E---CSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH-HHHHTTCCEEEECCHH
T ss_pred E---CCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHh-hhhhcCCCEEEeCCHH
Confidence 5 8888888888888888899766554443 3 332233333 2223464 67788883
No 195
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=67.97 E-value=8.5 Score=41.37 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=76.7
Q ss_pred cccc--cHHHHhccCCCeeEEEeecCChhh----HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 257 PVYK--KMEDAMSKNKDADVLVNFASLRSA----YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 257 p~y~--sv~daip~~~Dlavivi~~~~~~~----~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
++|. +..+.+. .+|++++|++.++... .+-+.+++. +|.. +++-.-+---..-++|.++|+++|+.++=..
T Consensus 65 ~~~~~~d~~~ll~-~~~iDvVv~~tp~~~h~~~a~~~~~~aL~-aGkh-Vv~~NKkpla~~~~eL~~~A~~~g~~~~~ea 141 (327)
T 3do5_A 65 MLRDDAKAIEVVR-SADYDVLIEASVTRVDGGEGVNYIREALK-RGKH-VVTSNKGPLVAEFHGLMSLAERNGVRLMYEA 141 (327)
T ss_dssp SCSBCCCHHHHHH-HSCCSEEEECCCCC----CHHHHHHHHHT-TTCE-EEECCSHHHHHHHHHHHHHHHHTTCCEECGG
T ss_pred cccCCCCHHHHhc-CCCCCEEEECCCCcccchhHHHHHHHHHH-CCCe-EEecCchhhHHHHHHHHHHHHhhCCcEEEEE
Confidence 4666 8888443 3445555555543322 454555555 7764 4432112111356789999999999887665
Q ss_pred ccccccCCccccccCCCCccccccc-CCCCCCCEEEEe--CChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHH
Q psy16953 331 TVGGLKPGCFKIGNTGGMMDNILHS-KLYRPGSVAYVS--RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHI 407 (806)
Q Consensus 331 ~~Gii~p~~~~ig~~~g~~~~~~~~-~~~~~G~ValvS--QSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l 407 (806)
+.|-..|. +... .....+.|.=|. .||+..+- +....+.| .+|.|+|
T Consensus 142 ~v~~g~Pi-------------i~~l~~~l~~~~I~~I~GIlnGT~nyi-lt~m~~~g----------------~~f~~~l 191 (327)
T 3do5_A 142 TVGGAMPV-------------VKLAKRYLALCEIESVKGIFNGTCNYI-LSRMEEER----------------LPYEHIL 191 (327)
T ss_dssp GSSTTSCC-------------HHHHHTTTTTSCEEEEEEECCHHHHHH-HHHHHHHC----------------CCHHHHH
T ss_pred EeeecCHH-------------HHHHHHHhhCCCccEEEEEECCCcCcc-hhhcCcCC----------------cCHHHHH
Confidence 55555554 1111 123446666555 38886654 44333333 4566665
Q ss_pred H------HhhcCCCccEEEEEEccCCcch-HHHHHHHHhc
Q psy16953 408 L------RYQADPEVKMIVLLGEVGGVEE-YEVCAALKDK 440 (806)
Q Consensus 408 ~------~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~ 440 (806)
. |-+.||.-.+ | |+.- ++++=.++.+
T Consensus 192 ~~Aq~~GyaE~DP~~Dv-----~--G~D~a~Kl~ILa~~~ 224 (327)
T 3do5_A 192 KEAQELGYAEADPSYDV-----E--GIDAALKLVIIANTI 224 (327)
T ss_dssp HHHHHTTSSCSSCHHHH-----T--SHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCchhhc-----C--ChhHHHHHHHHHHhh
Confidence 5 4455664432 4 6555 6655555543
No 196
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=67.65 E-value=22 Score=37.52 Aligned_cols=110 Identities=6% Similarity=-0.071 Sum_probs=63.9
Q ss_pred CceEEEEccCh---hHHHhhhhcc-cccccCCCcccceeEeecCCCc--c---cccccceeecccccc-cHHHHhccCCC
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFD-FVCRRSEPSVAAMVYPFTGDHK--L---KFYWGHKEVLIPVYK-KMEDAMSKNKD 271 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~g-f~~~~~~~~~~g~iypvnp~~~--~---~~~~g~~~i~~p~y~-sv~daip~~~D 271 (806)
..+|.|+|.+. ...++|.+.| | .|+-++++.. + +..--..+.++ +. |+.++ -+..|
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~-----------~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~-~~~aD 89 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAA-----------RLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAG-IACAD 89 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCS-----------EEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGG-GGGCS
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCC-----------eEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHH-HhcCC
Confidence 35799999873 2467888888 6 5665665410 0 00000000123 55 77774 34456
Q ss_pred eeEEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 272 ADVLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 272 lavivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+.++ ++ |.......++.+.. ..-..++|-.++......+++.+..++.|++++.
T Consensus 90 vVi~--av-p~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d 144 (317)
T 4ezb_A 90 VVLS--LV-VGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE 144 (317)
T ss_dssp EEEE--CC-CGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred EEEE--ec-CCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 6555 44 55455555566542 2224567767788888888888888888877664
No 197
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=67.44 E-value=4.2 Score=50.70 Aligned_cols=69 Identities=4% Similarity=-0.071 Sum_probs=51.9
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +... .++.+++.+....++ .|+||||..-.|++ ++.+..|.+|+++.+++
T Consensus 128 DK~~~k~~l~~~Gi--pvp-~~~~-----v~~~~ea~~~~~~ig-~PvVvKp~~~~Gg~----Gv~iv~~~eel~~~~~~ 194 (1073)
T 1a9x_A 128 DRRRFDVAMKKIGL--ETA-RSGI-----AHTMEEALAVAADVG-FPCIIRPSFTMGGS----GGGIAYNREEFEEICAR 194 (1073)
T ss_dssp SHHHHHHHHHHTTC--CCC-SEEE-----ESSHHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCc--CCC-CEEE-----ECCHHHHHHHHHHcC-CCEEEEECCCCCCC----ceEEeCCHHHHHHHHHH
Confidence 34567888888888 776 5555 578888877666676 69999999877755 45567789999998876
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 195 ~~ 196 (1073)
T 1a9x_A 195 GL 196 (1073)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 198
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=67.36 E-value=11 Score=38.97 Aligned_cols=108 Identities=10% Similarity=0.056 Sum_probs=58.9
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|...|+ .|+-++++......+ .+.++..+.++.+++. ..|+.++ ++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~-~~D~vi~--~v 69 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY-----------SLVVSDRNPEAIADV--IAAGAETASTAKAIAE-QCDVIIT--ML 69 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-----------EEEEECSCHHHHHHH--HHTTCEECSSHHHHHH-HCSEEEE--CC
T ss_pred ceEEEECchHHHHHHHHHHHhCCC-----------EEEEEeCCHHHHHHH--HHCCCeecCCHHHHHh-CCCEEEE--EC
Confidence 3799999653 23667777776 455555542100000 0114667888888544 4666555 44
Q ss_pred CChhhHHHHH---HHh---cCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 280 SLRSAYDSTI---ETL---GFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 280 ~~~~~~~~~l---e~~---~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+....+..++ +.+ ...|. .++-++.|.+ ...++|.+.+.+.|+.+++
T Consensus 70 ~~~~~~~~~~~~~~~l~~~l~~~~-~vv~~s~~~~-~~~~~l~~~~~~~g~~~~~ 122 (299)
T 1vpd_A 70 PNSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAP-LASREISDALKAKGVEMLD 122 (299)
T ss_dssp SSHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCH-HHHHHHHHHHHTTTCEEEE
T ss_pred CCHHHHHHHHhCcchHhhcCCCCC-EEEECCCCCH-HHHHHHHHHHHHcCCeEEE
Confidence 4366677776 222 22342 3444445554 3455666666666666654
No 199
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=67.04 E-value=26 Score=36.60 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCc--ccc-----------cc-cceee-c-ccccc
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKF-----------YW-GHKEV-L-IPVYK 260 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~-----------~~-g~~~i-~-~p~y~ 260 (806)
...+|+|.|.++-. ++.|++.|+ .|+-+..... ... .| +-..+ + +.-..
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-----------VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC-----------EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHH
Confidence 45689999988754 677888776 3443322100 000 00 00111 2 55556
Q ss_pred cHHHHhccCCCeeEEEeecCCh-----------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 261 KMEDAMSKNKDADVLVNFASLR-----------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 261 sv~daip~~~Dlavivi~~~~~-----------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
++.+++ +.+|. ||.++... .....++++|.+.+++.+|.+|+
T Consensus 93 ~~~~~~-~~~d~--Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 93 TCEQVM-KGVDH--VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp HHHHHT-TTCSE--EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHh-cCCCE--EEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 677743 45665 43344321 01224788998889998888875
No 200
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=66.68 E-value=3 Score=44.57 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=43.4
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +..+ ++ +.+++.. ..++ .++||||..--+.+| |.+..+.+|+++++++
T Consensus 132 dK~~~k~~l~~~Gi--p~p-~~~~--~~---~~~~~~~--~~~~-~PvvvKP~~~~~s~G----v~~v~~~~el~~a~~~ 196 (343)
T 1e4e_A 132 DKSLTYIVAKNAGI--ATP-AFWV--IN---KDDRPVA--ATFT-YPVFVKPARSGSSFG----VKKVNSADELDYAIES 196 (343)
T ss_dssp SHHHHHHHHHHTTC--BCC-CEEE--EC---TTCCCCG--GGSC-SCEEEEESSCCTTTT----CEEECSGGGHHHHHHH
T ss_pred CHHHHHHHHHHCCC--CcC-CEEE--Ee---chhhhhh--hccC-CCEEEEeCCCCCCCC----EEEeCCHHHHHHHHHH
Confidence 34567888888877 665 4433 22 2222211 3344 599999998776654 6666788999988887
Q ss_pred HcC
Q psy16953 87 RMG 89 (806)
Q Consensus 87 ~~g 89 (806)
...
T Consensus 197 ~~~ 199 (343)
T 1e4e_A 197 ARQ 199 (343)
T ss_dssp HTT
T ss_pred HHh
Confidence 653
No 201
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=66.36 E-value=7.6 Score=39.95 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHHH-HHHHh
Q psy16953 432 EVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDIIG-SVYKD 509 (806)
Q Consensus 432 ~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~~-all~~ 509 (806)
+++..+++ ..||||+..-|.+-. .|-+-+...-=.++.++.. +.--.-+.|++....... |...+- .....
T Consensus 90 ~~~~~l~~--~~kPvIAav~G~a~G-gG~~lalacD~~ia~~~a~----f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 162 (256)
T 3qmj_A 90 GLIKALAG--FPKPLICAVNGLGVG-IGATILGYADLAFMSSTAR----LKCPFTSLGVAPEAASSYLLPQLVGRQNAAW 162 (256)
T ss_dssp HHHHHHHH--CCSCEEEEECSEEET-HHHHGGGGCSEEEEETTCE----EECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCEEEEECCeehh-HHHHHHHhCCEEEEeCCCE----EECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 34444444 789999999988774 2444444433333333322 222223455543222111 111110 11112
Q ss_pred hhhCCccccCCCCCCCCCcccchHHhhccccc
Q psy16953 510 LVSRGDIVPQPELPPPTVPMDYSWARELGLIR 541 (806)
Q Consensus 510 L~~~g~i~~~~~~P~~~~PMd~~~a~~~g~~r 541 (806)
+ =....+++..+|++.|++.
T Consensus 163 l------------~ltg~~~~a~eA~~~GLv~ 182 (256)
T 3qmj_A 163 L------------LMSSEWIDAEEALRMGLVW 182 (256)
T ss_dssp H------------HHSCCCEEHHHHHHHTSSS
T ss_pred H------------HHcCCCCCHHHHHHCCCcc
Confidence 2 1355678888999999863
No 202
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=66.35 E-value=20 Score=38.57 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=26.7
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
..+|+++. +.|.....+..+++.++|++ +|..|+-|.
T Consensus 67 ~~vDvV~~---a~g~~~s~~~a~~~~~aG~~-VId~Sa~~r 103 (345)
T 2ozp_A 67 EPADILVL---ALPHGVFAREFDRYSALAPV-LVDLSADFR 103 (345)
T ss_dssp CCCSEEEE---CCCTTHHHHTHHHHHTTCSE-EEECSSTTS
T ss_pred cCCCEEEE---cCCcHHHHHHHHHHHHCCCE-EEEcCcccc
Confidence 45676555 77887778888888789987 666676563
No 203
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=66.06 E-value=27 Score=36.66 Aligned_cols=112 Identities=7% Similarity=-0.057 Sum_probs=67.9
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCC---CcccccccceeecccccccHHHHhccCCCeeEE
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGD---HKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVL 275 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~---~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavi 275 (806)
..+|.|+|.+. ...++|.+.|| ..|+-++.+ .+.+. ..+.++..+.|..+++ +..|+.++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~----------~~V~~~dr~~~~~~~~~---~~~~g~~~~~~~~e~~-~~aDvVi~ 89 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGA----------IDMAAYDAASAESWRPR---AEELGVSCKASVAEVA-GECDVIFS 89 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSC----------CEEEEECSSCHHHHHHH---HHHTTCEECSCHHHHH-HHCSEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----------CeEEEEcCCCCHHHHHH---HHHCCCEEeCCHHHHH-hcCCEEEE
Confidence 46899999873 34678888885 145555553 10000 0122467788998854 44576555
Q ss_pred EeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHc--CCeEEccC
Q psy16953 276 VNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEK--GVSIIGPA 330 (806)
Q Consensus 276 vi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~--giriiGPN 330 (806)
++|......+++.+.. ..-..++|-.+.......+++.+...+. |++++.+.
T Consensus 90 ---~vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~p 144 (312)
T 3qsg_A 90 ---LVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVA 144 (312)
T ss_dssp ---CSCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ---ecCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 4455555556666542 2223566767777777777787777777 77776543
No 204
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=65.98 E-value=5.3 Score=40.86 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCc
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~ 331 (806)
.+|+ +|=|..| +++.+.++.|.+.|++ +||-|.||.+++.+++.+.+++ ---++-||.
T Consensus 53 ~~DV--vIDFT~P-~a~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNf 110 (228)
T 1vm6_A 53 SPDV--VIDFSSP-EALPKTVDLCKKYRAG-LVLGTTALKEEHLQMLRELSKE-VPVVQAYNF 110 (228)
T ss_dssp CCSE--EEECSCG-GGHHHHHHHHHHHTCE-EEECCCSCCHHHHHHHHHHTTT-SEEEECSCC
T ss_pred CCCE--EEECCCH-HHHHHHHHHHHHcCCC-EEEeCCCCCHHHHHHHHHHHhh-CCEEEeccc
Confidence 4564 4336655 5788889999889987 6667899999877778777655 345677773
No 205
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=65.66 E-value=71 Score=28.13 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh-
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD- 439 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~- 439 (806)
-+|-+|.........+...+.+.|.... +.... +..+.++.+.+. ...+|++-.+.++..-.++++.+++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~~-v~~~~-------~~~~a~~~l~~~-~~dlii~D~~l~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIHCQ-LEFVD-------NGAKALYQVQQA-KYDLIILDIGLPIANGFEVMSAVRKP 76 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCCEE-EEEES-------SHHHHHHHHTTC-CCSEEEECTTCGGGCHHHHHHHHHSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCCee-EEEEC-------CHHHHHHHhhcC-CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3688999999998888888888654421 22222 235777777654 3567777555333222788899988
Q ss_pred -cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccC-ChhhHHHHHHHHHHhh
Q psy16953 440 -KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPS-SFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 -~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~-~~~EL~~~~~all~~L 510 (806)
.....|||++-. .... . ....+.++|+ ..+. +.++|...++.+++..
T Consensus 77 ~~~~~~pii~~s~-~~~~-------------------~----~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 77 GANQHTPIVILTD-NVSD-------------------D----RAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp STTTTCCEEEEET-TCCH-------------------H----HHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeC-CCCH-------------------H----HHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHH
Confidence 446789888742 2111 0 1222334564 2344 8899999998888766
No 206
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=65.14 E-value=2 Score=54.02 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=12.4
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+.+|+++.+++. |++ +.... ..+|++++.+....++ .++||||...-++|| |.+..|.+|+++++++.
T Consensus 135 K~~~k~~l~~~GI--Pvp-~~~~~---~v~s~eea~~~a~~ig-yPvVVKp~~g~GG~G----v~iv~s~eEL~~a~~~~ 203 (1165)
T 2qf7_A 135 KVAARNLAISVGV--PVV-PATEP---LPDDMAEVAKMAAAIG-YPVMLKASWGGGGRG----MRVIRSEADLAKEVTEA 203 (1165)
T ss_dssp HHHHHHHHHHTTC--CBC--------------------------------------------------------------
T ss_pred HHHHHHHHHHcCC--CCC-CeeCc---CCCCHHHHHHHHHhcC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 4667889999988 666 44310 1456777776666666 699999999888776 67777888888777654
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
+
T Consensus 204 ~ 204 (1165)
T 2qf7_A 204 K 204 (1165)
T ss_dssp -
T ss_pred H
Confidence 3
No 207
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=64.60 E-value=5.5 Score=40.26 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCceeEEEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEE
Q psy16953 375 ELNNIISKATNGVYEGVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLV 447 (806)
Q Consensus 375 ~l~~~~~~~g~G~s~~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV 447 (806)
.+.+.+.+.. .|-+++. .+- .+.+.|.++.+|+..|.|.+|+. .||.-. ..+.+.+++ .+|||+
T Consensus 37 d~~~~l~~~r-----ii~l~g~--I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~--~~~pV~ 107 (218)
T 1y7o_A 37 DIYSRLLKDR-----IIMLTGP--VEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNF--IKADVQ 107 (218)
T ss_dssp EHHHHHHHTT-----EEEEESC--BCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHH--SSSCEE
T ss_pred hHHHHhhcCC-----EEEEeCE--ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHh--cCCCEE
Confidence 4555544433 3556666 332 23455667788999999999998 454433 667777777 469999
Q ss_pred EEEeCcCcC
Q psy16953 448 AWCIGTCAS 456 (806)
Q Consensus 448 ~lk~Grs~~ 456 (806)
+++.|....
T Consensus 108 t~v~G~AaS 116 (218)
T 1y7o_A 108 TIVMGMAAS 116 (218)
T ss_dssp EEEEEEEET
T ss_pred EEEccEeHH
Confidence 999887664
No 208
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=63.94 E-value=10 Score=39.65 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=66.5
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccc-cccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPV-YKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~-y~sv~daip~~~Dlavivi 277 (806)
..+|.|+|.+. ...++|.+.|| .|+-++.+...-..+ .+.+... ..++.++ -+..|+.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-----------~V~~~dr~~~~~~~~--~~~g~~~~~~~~~e~-~~~aDvvi~-- 70 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-----------STWGADLNPQACANL--LAEGACGAAASAREF-AGVVDALVI-- 70 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSCHHHHHHH--HHTTCSEEESSSTTT-TTTCSEEEE--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-----------eEEEEECCHHHHHHH--HHcCCccccCCHHHH-HhcCCEEEE--
Confidence 45899999873 24678888887 566666542100000 0113344 7788884 444565544
Q ss_pred ecCChhhHHHHH---HHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 278 FASLRSAYDSTI---ETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 278 ~~~~~~~~~~~l---e~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+++....+..++ +.+.. ..-..++|-.+.......+++.+.+++.|+.++.
T Consensus 71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 125 (303)
T 3g0o_A 71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD 125 (303)
T ss_dssp CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 555555677776 44421 2223566667777777778888888887777664
No 209
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=63.84 E-value=15 Score=37.95 Aligned_cols=111 Identities=14% Similarity=0.004 Sum_probs=61.1
Q ss_pred ceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc--cccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI--PVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~--p~y~sv~daip~~~Dlavivi 277 (806)
.+|.|+|.+.- ..+.|.+.|+ .-.|+-++++......+ .+.+. ..+.++.+++ ...|+.++
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~---------~~~V~~~d~~~~~~~~~--~~~g~~~~~~~~~~~~~-~~aDvVil-- 72 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHP---------HYKIVGYNRSDRSRDIA--LERGIVDEATADFKVFA-ALADVIIL-- 72 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT---------TSEEEEECSSHHHHHHH--HHTTSCSEEESCTTTTG-GGCSEEEE--
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCC---------CcEEEEEcCCHHHHHHH--HHcCCcccccCCHHHhh-cCCCEEEE--
Confidence 47999997632 3566776643 22566666542100000 01122 3456776633 44676555
Q ss_pred ecCChhhHHHHHHHhcCC--CCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 278 FASLRSAYDSTIETLGFP--QIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~--gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++|.....++++++... .-..+++..++......+++.+...+.++|+++
T Consensus 73 -avp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~ 124 (290)
T 3b1f_A 73 -AVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVG 124 (290)
T ss_dssp -CSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEE
T ss_pred -cCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEE
Confidence 66777778888887532 223455555666544445555554444788876
No 210
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=63.65 E-value=17 Score=36.92 Aligned_cols=86 Identities=8% Similarity=0.010 Sum_probs=48.4
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc-CCCeeEE
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK-NKDADVL 275 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~-~~Dlavi 275 (806)
...+|+|.|.++-. ++.|++.|+ +. ......+..- ...+.-..++.+++.+ .+|. |
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~~----~~~~~~~~~~----------~~D~~d~~~~~~~~~~~~~d~--V 65 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAG---LP----GEDWVFVSSK----------DADLTDTAQTRALFEKVQPTH--V 65 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTC---CT----TCEEEECCTT----------TCCTTSHHHHHHHHHHSCCSE--E
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCC---cc----cccccccCce----------ecccCCHHHHHHHHhhcCCCE--E
Confidence 56789999998764 667777775 11 1111111110 1124445566675544 3554 4
Q ss_pred EeecCChh------------------hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 276 VNFASLRS------------------AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 276 vi~~~~~~------------------~~~~~le~~~~~gvk~~viis~ 305 (806)
|.++.... ....++++|.+.|++.+|.+|+
T Consensus 66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS 113 (319)
T 4b8w_A 66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS 113 (319)
T ss_dssp EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 33433211 1224788998889998888776
No 211
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=63.32 E-value=13 Score=37.57 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=53.9
Q ss_pred ceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+.- ..++|.+.|+ .|+-++++......+ .+..++..+.+..+++ ...|+.++ +
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~-----------~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~D~Vi~---~ 67 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPH-----------ELIISGSSLERSKEI-AEQLALPYAMSHQDLI-DQVDLVIL---G 67 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC-----------EEEEECSSHHHHHHH-HHHHTCCBCSSHHHHH-HTCSEEEE---C
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-----------eEEEECCCHHHHHHH-HHHcCCEeeCCHHHHH-hcCCEEEE---E
Confidence 47999997632 3567777665 455555432100000 0122567788998854 45676665 5
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHH
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENM 311 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~ 311 (806)
+|.....++++++. +|. .++-.+.|++.+.
T Consensus 68 v~~~~~~~v~~~l~-~~~-~vv~~~~~~~~~~ 97 (259)
T 2ahr_A 68 IKPQLFETVLKPLH-FKQ-PIISMAAGISLQR 97 (259)
T ss_dssp SCGGGHHHHHTTSC-CCS-CEEECCTTCCHHH
T ss_pred eCcHhHHHHHHHhc-cCC-EEEEeCCCCCHHH
Confidence 56778888888875 443 3444557887643
No 212
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=63.08 E-value=23 Score=36.21 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=56.9
Q ss_pred eEEEEccCh--h-HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 204 KAIVWGMQT--R-AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 204 ~v~V~G~~~--r-~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+|.|+|.+. . ..++|.+ |+ .|+-++++......+ .+.++..+. ..+++ ...|+.++ +++
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~-~~~~~-~~~D~vi~--~v~ 64 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RF-----------PTLVWNRTFEKALRH--QEEFGSEAV-PLERV-AEARVIFT--CLP 64 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TS-----------CEEEECSSTHHHHHH--HHHHCCEEC-CGGGG-GGCSEEEE--CCS
T ss_pred eEEEEcccHHHHHHHHHHhC-CC-----------eEEEEeCCHHHHHHH--HHCCCcccC-HHHHH-hCCCEEEE--eCC
Confidence 688999763 2 3667777 87 355555442100000 001334444 55633 34666555 454
Q ss_pred ChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 281 LRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 281 ~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
....+..+++++.. ..-..+++..+.......+++.+.+.+.|++++
T Consensus 65 ~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~ 112 (289)
T 2cvz_A 65 TTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL 112 (289)
T ss_dssp SHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45457778877642 222345555455555556677777776665554
No 213
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=63.05 E-value=6.3 Score=39.50 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhcCCceeEEEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCC
Q psy16953 370 GGMSNELNNIISKATNGVYEGVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRI 442 (806)
Q Consensus 370 G~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~ 442 (806)
|.-...+.+.+.+.. .|-+++. .+- .+.+.|.++.+|+.+|.|++|+. .||.-. ..+.+.+++.
T Consensus 14 ~~~~~~~~~~l~~~r-----ii~l~G~--I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~-- 84 (208)
T 2cby_A 14 LSLTDSVYERLLSER-----IIFLGSE--VNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA-- 84 (208)
T ss_dssp -CHHHHHHHHHHTTT-----EEEECSC--BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC--
T ss_pred CcchhhHHHHhhcCc-----EEEEcCE--ECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--
Confidence 334556666655533 4677777 332 23455566688899999999999 555544 6677888874
Q ss_pred CCCEEEEEeCcCcC
Q psy16953 443 TKPLVAWCIGTCAS 456 (806)
Q Consensus 443 ~KPVV~lk~Grs~~ 456 (806)
+|||+++..|..++
T Consensus 85 ~~pV~~~v~g~AaS 98 (208)
T 2cby_A 85 PCDIATYAMGMAAS 98 (208)
T ss_dssp SSCEEEEEEEEEET
T ss_pred CCCEEEEECcEeHH
Confidence 59999999887664
No 214
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=62.89 E-value=67 Score=27.90 Aligned_cols=114 Identities=10% Similarity=0.087 Sum_probs=73.8
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhc
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDK 440 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~ 440 (806)
-+|-+|...-.....+...+.+.| +.. +... +..+.+..+.+.+...+|++-.+..+....++++.+++.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g--~~v-~~~~-------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRG--IDA-VGAD-------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRAS 77 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT--CCE-EEES-------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CeEEEECCCHHHHHHHHHHHHHcC--ceE-EEeC-------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence 469999999999888888888764 432 2222 245778888777667788776664444337889999886
Q ss_pred -CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHH
Q psy16953 441 -RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYK 508 (806)
Q Consensus 441 -~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~ 508 (806)
....|||++-. .... . ....+.++|+ ..+-+.++|...++.+..
T Consensus 78 ~~~~~~ii~~s~-~~~~-------------------~----~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 78 ERAALSIIVVSG-DTDV-------------------E----EAVDVMHLGVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp TTTTCEEEEEES-SCCH-------------------H----HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeC-CCCh-------------------H----HHHHHHhCCcceEEeCCCCHHHHHHHHHHHhc
Confidence 46678887732 2111 0 2222335665 235678888888776654
No 215
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=62.12 E-value=5.8 Score=44.59 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=43.9
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChh-hHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRS-AYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~-~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
.++|.+.++. =+.+|+++++++.+... ..+-+++++. +|. .+++..-.......++|.++|+++|+.+..
T Consensus 93 ~~v~~D~eeL-L~d~dIDaVviaTp~p~~H~e~a~~AL~-AGK-HVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~ 163 (446)
T 3upl_A 93 IAVTDDNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIR-NGK-HLVMMNVEADVTIGPYLKAQADKQGVIYSL 163 (446)
T ss_dssp EEEESCHHHH-HTCTTCCEEEECSCCHHHHHHHHHHHHH-TTC-EEEECCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred ceEECCHHHH-hcCCCCCEEEEcCCChHHHHHHHHHHHH-cCC-cEEecCcccCHHHHHHHHHHHHHhCCeeee
Confidence 4678899994 44456666666665443 4566666666 774 455533211113457899999999976653
No 216
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=61.40 E-value=17 Score=39.55 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=61.2
Q ss_pred CCCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc--cccc--ccceeecccccccHHHHhccCCCe
Q psy16953 200 QEQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFY--WGHKEVLIPVYKKMEDAMSKNKDA 272 (806)
Q Consensus 200 ~~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~--~g~~~i~~p~y~sv~daip~~~Dl 272 (806)
.++.+|+|+|.+.- .+++|.+. + .|+-.+.+.. +++. ++...+.+.-+.++.+++. ..|+
T Consensus 14 ~~~~~v~IiGaG~iG~~ia~~L~~~-~-----------~V~V~~R~~~~a~~la~~~~~~~~d~~~~~~l~~ll~-~~Dv 80 (365)
T 2z2v_A 14 GRHMKVLILGAGNIGRAIAWDLKDE-F-----------DVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK-EFEL 80 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHHTTT-S-----------EEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT-TCSC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHcC-C-----------eEEEEECCHHHHHHHHhhCCeEEEecCCHHHHHHHHh-CCCE
Confidence 46789999998632 25555554 3 3444444311 0000 0000111333567777544 4676
Q ss_pred eEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 273 DVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 273 avivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
++. +.|......++++|.+.|+.. +-++ ..++ ..+++.+.|++.|+.++
T Consensus 81 VIn---~~P~~~~~~v~~a~l~~G~~~-vD~s-~~~~-~~~~l~~~Ak~aG~~~l 129 (365)
T 2z2v_A 81 VIG---ALPGFLGFKSIKAAIKSKVDM-VDVS-FMPE-NPLELRDEAEKAQVTIV 129 (365)
T ss_dssp EEE---CCCHHHHHHHHHHHHHTTCCE-EECC-CCSS-CGGGGHHHHHHTTCEEE
T ss_pred EEE---CCChhhhHHHHHHHHHhCCeE-EEcc-CCcH-HHHHHHHHHHHcCCEEE
Confidence 554 456555567889998888874 3333 3443 23578889999999988
No 217
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=61.24 E-value=25 Score=35.46 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=55.5
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|.+.|++ + .-.|+-++++.. . .++.++.+..+++ +..|+.++ +
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~-----~--~~~v~~~~~~~~-------~-~g~~~~~~~~~~~-~~~D~vi~---~ 65 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANII-----K--KENLFYYGPSKK-------N-TTLNYMSSNEELA-RHCDIIVC---A 65 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSS-----C--GGGEEEECSSCC-------S-SSSEECSCHHHHH-HHCSEEEE---C
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCC-----C--CCeEEEEeCCcc-------c-CceEEeCCHHHHH-hcCCEEEE---E
Confidence 4799999863 236677777730 0 025666665531 1 3466677888843 45677666 5
Q ss_pred CChhhHHHHHHHhcCC-CCCEEEEEcCCCCHH
Q psy16953 280 SLRSAYDSTIETLGFP-QIRSIAIIAEGIPEN 310 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~-gvk~~viis~Gf~E~ 310 (806)
+|...+.++++++... .-+.++..++|++.+
T Consensus 66 v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~ 97 (262)
T 2rcy_A 66 VKPDIAGSVLNNIKPYLSSKLLISICGGLNIG 97 (262)
T ss_dssp SCTTTHHHHHHHSGGGCTTCEEEECCSSCCHH
T ss_pred eCHHHHHHHHHHHHHhcCCCEEEEECCCCCHH
Confidence 5677889998887521 223577778899874
No 218
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=60.86 E-value=7.2 Score=38.50 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=44.8
Q ss_pred EEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 390 GVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 390 ~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.|-+++. .+- .+...|.++..|+..|.|++|+. +||.-. ..+.+.+++. ++||+++..|.+++
T Consensus 28 ii~l~g~--I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~--~~pV~~~v~g~AaS 97 (193)
T 1yg6_A 28 VIFLTGQ--VEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI--KPDVSTICMGQAAS 97 (193)
T ss_dssp EEEEESS--BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEEEET
T ss_pred EEEEcCE--EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc--CCCEEEEEeeeHHH
Confidence 4556666 332 24445567777888999999999 565554 6678888874 48999999887765
No 219
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=59.67 E-value=39 Score=35.13 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=55.7
Q ss_pred ceEEEEc-cCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 203 TKAIVWG-MQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 203 t~v~V~G-~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
.+|.|+| .+. ...+.|.+.|+ .|+-++++. + .+..+++ ...|+.++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-----------~V~~~~~~~--------~-------~~~~~~~-~~aDvVil--- 71 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-----------PISILDRED--------W-------AVAESIL-ANADVVIV--- 71 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-----------CEEEECTTC--------G-------GGHHHHH-TTCSEEEE---
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----------eEEEEECCc--------c-------cCHHHHh-cCCCEEEE---
Confidence 4799999 653 34667777776 455555541 1 2566633 44676555
Q ss_pred cCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 279 ASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++|...+.++++++.. ..-..+|+..++......+++.+. .+.++++
T Consensus 72 avp~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~ 119 (298)
T 2pv7_A 72 SVPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLG 119 (298)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEE
T ss_pred eCCHHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEe
Confidence 6677788999988752 222346776778876544444332 3455553
No 220
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.49 E-value=86 Score=26.99 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=75.3
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcC------CCccEEEEEEccCCcchHHHH
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQAD------PEVKMIVLLGEVGGVEEYEVC 434 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~D------p~Tk~I~ly~Eigg~~d~~f~ 434 (806)
.+|-+|...-.....+...+.+.|..+. +.... +..+.++++.+. ....+|++-.+..+....+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~-------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 74 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHE-VVTVR-------DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVL 74 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEEC-------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEC-------CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHH
Confidence 4688888888888888888877554322 22222 245788888762 456788776664443337888
Q ss_pred HHHHhcC--CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHH
Q psy16953 435 AALKDKR--ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYK 508 (806)
Q Consensus 435 ~a~r~~~--~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~ 508 (806)
+.+++.. ...|||++-...... ....++ ++|+ ..+-+.++|...++.++.
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~-----------------------~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINED-----------------------DIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHH-----------------------HHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHH-----------------------HHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 9888854 568998874221111 122233 4554 235688999999988877
Q ss_pred hh
Q psy16953 509 DL 510 (806)
Q Consensus 509 ~L 510 (806)
..
T Consensus 131 ~~ 132 (140)
T 1k68_A 131 FW 132 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 221
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=58.29 E-value=1e+02 Score=27.43 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=72.3
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|..+-.....+...+.+.+- +..+....+ ..+.++++.+.+ ..+|++-+...+..-.++++.+++..
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~-~~~v~~~~~-------~~~al~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPD-VESVLQAKN-------GQEAIQLLEKES-VDIAILDVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTT-EEEEEEESS-------HHHHHHHHTTSC-CSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCC-cEEEEEECC-------HHHHHHHhhccC-CCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 599999999988888888776552 333333332 347888776543 57777766644433378899998876
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCc----ccCChhhHHHHHHHHHHh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH----VPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi----~v~~~~EL~~~~~all~~ 509 (806)
...|||++-...... ....+.++|+. .+.+.++|...++.++..
T Consensus 93 ~~~~ii~ls~~~~~~------------------------~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 93 LETKVVVVTTFKRAG------------------------YFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSCEEEEEESCCCHH------------------------HHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHH------------------------HHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 778888874221111 22223355652 345778888877776643
No 222
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=58.12 E-value=4.8 Score=50.84 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=12.9
Q ss_pred hhchHHHHHhhCCCCcccccc-cccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKC-RFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.+.+|+++.+++. |++ |. .+ .+|.+++.+....++ .++||||...-++|| |.+..|.+|+++++++
T Consensus 145 K~~ak~ll~~aGI--Pvp-p~~~~-----v~s~eea~~~a~~iG-yPvVVKP~~GgGGkG----V~iv~s~eEL~~a~~~ 211 (1236)
T 3va7_A 145 KHSAREIAERAKV--PLV-PGSGL-----IKDAKEAKEVAKKLE-YPVMVKSTAGGGGIG----LQKVDSEDDIERVFET 211 (1236)
T ss_dssp TTHHHHHHHHTTC--CCC-C------------------------------------------------------------
T ss_pred HHHHHHHHHHcCC--CCC-CeeEe-----cCCHHHHHHHHHHcC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHHH
Confidence 4668899999988 665 42 33 567888877777777 699999987777665 6677788998888876
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
.+
T Consensus 212 ~~ 213 (1236)
T 3va7_A 212 VQ 213 (1236)
T ss_dssp --
T ss_pred HH
Confidence 54
No 223
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=57.06 E-value=4.6 Score=43.98 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=44.1
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCH--HHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSW--AELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWI 84 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~ 84 (806)
.-+..|++|.+++. |++ +..+ ++..... .+. ...++ .++||||...-+.+| |.+..+.+|+++++
T Consensus 151 DK~~~k~~l~~~GI--p~p-~~~~--~~~~~~~~~~~~---~~~lg-~PvvVKP~~ggss~G----V~~v~~~~eL~~a~ 217 (373)
T 3lwb_A 151 DKEFTKKLLAADGL--PVG-AYAV--LRPPRSTLHRQE---CERLG-LPVFVKPARGGSSIG----VSRVSSWDQLPAAV 217 (373)
T ss_dssp BHHHHHHHHHHTTC--CBC-CEEE--ECTTCCCCCHHH---HHHHC-SCEEEEESBCSTTTT----CEEECSGGGHHHHH
T ss_pred CHHHHHHHHHHcCc--CCC-CEEE--EECcccchhHHH---HHhcC-CCEEEEeCCCCCCCC----EEEeCCHHHHHHHH
Confidence 34567889999988 666 4443 2222210 121 23344 699999987665443 55666889999888
Q ss_pred HHHcC
Q psy16953 85 SERMG 89 (806)
Q Consensus 85 ~~~~g 89 (806)
++...
T Consensus 218 ~~a~~ 222 (373)
T 3lwb_A 218 ARARR 222 (373)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87654
No 224
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=57.04 E-value=11 Score=38.61 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.+++++++.+.|+|.+-+++. +....++.+.+..+++|+.++.|.++|+.
T Consensus 105 ~~A~~~al~~~g~~rvglltp-y~~~~~~~~~~~l~~~Giev~~~~~~~~~ 154 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA-YIDDVNERLAAFLAEESLVPTGCRSLGIT 154 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES-SCHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCEEEEEeC-ChHHHHHHHHHHHHHCCCEEeccccCCCC
Confidence 456666676678899999987 77777788888888899999999987753
No 225
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=56.70 E-value=8.4 Score=40.77 Aligned_cols=68 Identities=9% Similarity=0.006 Sum_probs=43.5
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+..|++|.+++. |++ +..+ ++. .++ +.. .++ .++||||...-+.+ +|.+..+.+|+++++++
T Consensus 118 dK~~~k~~l~~~Gi--p~p-~~~~--~~~---~~~--~~~-~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el~~a~~~ 181 (322)
T 2fb9_A 118 DKDLSKRVLAQAGV--PVV-PWVA--VRK---GEP--PVV-PFD-PPFFVKPANTGSSV----GISRVERFQDLEAALAL 181 (322)
T ss_dssp CHHHHHHHHHHTTC--CCC-CEEE--EET---TSC--CCC-CSC-SCEEEEETTCCTTT----TCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC--CCC-CEEE--EEC---chh--hhh-ccC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 34567888999887 665 4433 221 122 111 333 59999999876644 35666789999999887
Q ss_pred HcCC
Q psy16953 87 RMGK 90 (806)
Q Consensus 87 ~~g~ 90 (806)
....
T Consensus 182 ~~~~ 185 (322)
T 2fb9_A 182 AFRY 185 (322)
T ss_dssp HTTT
T ss_pred HHhc
Confidence 6643
No 226
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=56.20 E-value=4.7 Score=43.76 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=39.2
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCcc-ccccCccCceeecCC--HHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQL-IKRRGKLGLIKVNTD--FKGAQS 82 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l-~~~RGK~Glv~l~~~--~~e~~~ 82 (806)
+..|++|.+++. |++ +... .++.+++.+....++ .|+||||... -+++| +.+..| .+|+++
T Consensus 81 ~~~k~~l~~~GI--ptp-~~~~-----v~~~~e~~~~~~~~G-~P~VvKp~~~G~~GkG----v~~v~~~~~~el~~ 144 (355)
T 3eth_A 81 LTQKQLFDKLHL--PTA-PWQL-----LAERSEWPAVFDRLG-ELAIVKRRTGGYDGRG----QWRLRANETEQLPA 144 (355)
T ss_dssp HHHHHHHHHTTC--CBC-CEEE-----ECCGGGHHHHHHHHC-SEEEEEESSSCCTTTT----EEEEETTCGGGSCG
T ss_pred HHHHHHHHHCcc--CCC-CEEE-----ECCHHHHHHHHHHcC-CCEEEEecCCCCCCCe----EEEEcCCCHHHHHH
Confidence 456788888887 776 5554 456777766666676 6999999875 33333 333344 555443
No 227
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=55.40 E-value=26 Score=37.02 Aligned_cols=132 Identities=12% Similarity=-0.010 Sum_probs=72.3
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCC------CC----CCCCHHHHHHHhh-----cCCCccEEEEEEccC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGD------RY----PGTTFMDHILRYQ-----ADPEVKMIVLLGEVG 426 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~------~~----~d~~~~D~l~~l~-----~Dp~Tk~I~ly~Eig 426 (806)
+||+|.-+|.++...+..+.+.+.-+..+++.-.+ .+ .-.++.++++++. +|++..+|++...
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP-- 82 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP-- 82 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC--
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC--
Confidence 47777776766666666666554333333332111 01 1136677776543 4899999877554
Q ss_pred CcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHH
Q psy16953 427 GVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSV 506 (806)
Q Consensus 427 g~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~al 506 (806)
.-...+....+- ..+|+|++=|+-.... ..+....++.++.|+.....+..-++-.-..
T Consensus 83 ~~~H~~~~~~al--~aGkhVl~EKPla~~~-------------------~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~ 141 (318)
T 3oa2_A 83 NYLHYPHIAAGL--RLGCDVICEKPLVPTP-------------------EMLDQLAVIERETDKRLYNILQLRHHQAIIA 141 (318)
T ss_dssp GGGHHHHHHHHH--HTTCEEEECSSCCSCH-------------------HHHHHHHHHHHHHTCCEEECCGGGGCHHHHH
T ss_pred cHHHHHHHHHHH--HCCCeEEEECCCcCCH-------------------HHHHHHHHHHHHhCCEEEEEEhhhcCHHHHH
Confidence 222244443332 3679999877522221 2334467788888986655554444444444
Q ss_pred HHhhhhCCcc
Q psy16953 507 YKDLVSRGDI 516 (806)
Q Consensus 507 l~~L~~~g~i 516 (806)
+.+++++|.|
T Consensus 142 ~k~~i~~g~i 151 (318)
T 3oa2_A 142 LKDKVAREKS 151 (318)
T ss_dssp HHHHHHHS-C
T ss_pred HHHHHhcCCC
Confidence 5555555544
No 228
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=55.33 E-value=58 Score=33.95 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=98.4
Q ss_pred cccceeEeecCCCcccccccceeecccccccHHHHhccCC-----CeeEEE--eecCChhhHHHHHHHh-cCCCCCEEEE
Q psy16953 231 SVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNK-----DADVLV--NFASLRSAYDSTIETL-GFPQIRSIAI 302 (806)
Q Consensus 231 ~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~-----Dlaviv--i~~~~~~~~~~~le~~-~~~gvk~~vi 302 (806)
.--|-+.|.++.. ...|......+..|+.+.- .+.+++ .-..+..+ ...++.+ .+.+|..+|-
T Consensus 17 ~~iG~~~plsG~~--------a~~g~~~~~g~~~a~~~in~i~G~~i~l~~~D~~~~~~~~-~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 17 VKIAVILPMTGGI--------SAFGRMVWEGIQIAHEEKPTVLGEEVELVLLDTRSEKTEA-ANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp EEEEEEECCSSTT--------HHHHHHHHHHHHHHHHHCCEETTEEEEEEEEECTTCHHHH-HHHHHHHHHTSCCSEEEE
T ss_pred EEEEEEECCcCcc--------hhcCHHHHHHHHHHHHHhhhcCCeEEEEEEecCCCCHHHH-HHHHHHHhccCCeEEEEc
Confidence 3457788888753 3334455555555443321 133331 11112222 3334444 4445876552
Q ss_pred EcCCCCHHHHHHHHHHHHHcCCeEEccCccc--cc--cCCccccccCCC----CcccccccCCCCCCCEEEEeC-ChhHH
Q psy16953 303 IAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GL--KPGCFKIGNTGG----MMDNILHSKLYRPGSVAYVSR-SGGMS 373 (806)
Q Consensus 303 is~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii--~p~~~~ig~~~g----~~~~~~~~~~~~~G~ValvSQ-SG~l~ 373 (806)
.+.......+.+.+++.++.++.|++.. +- +|..+++..... ....+.- ..+..-+|++|.. ....+
T Consensus 88 ---~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~-~~~g~~~iaii~~~~~~~~ 163 (366)
T 3td9_A 88 ---EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAY-KNLGAKRVVVFTDVEQDYS 163 (366)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHH-HTSCCCEEEEEEETTCHHH
T ss_pred ---cCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHH-HhcCCcEEEEEEeCCCcHH
Confidence 1233455567788899999999998632 11 111122210000 0000000 1123348999964 33333
Q ss_pred H----HHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCCCCEEE
Q psy16953 374 N----ELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 374 ~----~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KPVV~ 448 (806)
. .+...+.+.|+-+.... .-. .+.++...+.-+.+. +.++|++... -.+ ..|++++++...+.|++.
T Consensus 164 ~~~~~~~~~~~~~~G~~v~~~~-~~~---~~~d~~~~~~~l~~~-~~d~v~~~~~---~~~a~~~~~~~~~~g~~~~~~~ 235 (366)
T 3td9_A 164 VGLSNFFINKFTELGGQVKRVF-FRS---GDQDFSAQLSVAMSF-NPDAIYITGY---YPEIALISRQARQLGFTGYILA 235 (366)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-ECT---TCCCCHHHHHHHHHT-CCSEEEECSC---HHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-eCC---CCccHHHHHHHHHhc-CCCEEEEccc---hhHHHHHHHHHHHcCCCceEEe
Confidence 3 33445566666544333 222 245677777776543 3446655333 344 778899988777777654
No 229
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=55.14 E-value=58 Score=33.85 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee-c-ccccccHHHHhccCCCeeE
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV-L-IPVYKKMEDAMSKNKDADV 274 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i-~-~p~y~sv~daip~~~Dlav 274 (806)
++.+|+|.|.++-. ++.|++.|| .|+-+..+... -+...+ + +.-..++.+++ +.+|..+
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~-----------~V~~~~r~~~~---~~~~~~~~Dl~d~~~~~~~~-~~~d~vi 82 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGR-----------TVRGFDLRPSG---TGGEEVVGSLEDGQALSDAI-MGVSAVL 82 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC-----------CEEEEESSCCS---SCCSEEESCTTCHHHHHHHH-TTCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-----------EEEEEeCCCCC---CCccEEecCcCCHHHHHHHH-hCCCEEE
Confidence 55689999998754 677888886 34433322100 001122 2 55566777744 4566533
Q ss_pred EEeecCCh---------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 275 LVNFASLR---------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 275 ivi~~~~~---------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
.++... .....++++|.+.+++.+|.+|+
T Consensus 83 --h~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 83 --HLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp --ECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred --ECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 333221 12345788888899999998887
No 230
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=55.14 E-value=19 Score=40.38 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=65.3
Q ss_pred ccccccHHHHhccCCCeeEEEeecCC-hhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASL-RSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGG 334 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~-~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gi 334 (806)
.+.|.+..+ +-+.+|+++++++.++ ..+.+-+++++. +|.. +++---..--...++|.++|+++|+.+.=-.+.|-
T Consensus 64 ~~~~~d~~e-ll~d~diDvVve~tp~~~~h~~~~~~AL~-aGKh-Vvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~ 140 (444)
T 3mtj_A 64 LPLTTNPFD-VVDDPEIDIVVELIGGLEPARELVMQAIA-NGKH-VVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAG 140 (444)
T ss_dssp CCEESCTHH-HHTCTTCCEEEECCCSSTTHHHHHHHHHH-TTCE-EEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSST
T ss_pred CcccCCHHH-HhcCCCCCEEEEcCCCchHHHHHHHHHHH-cCCE-EEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeC
Confidence 578899999 5555666666666554 344455555555 7754 44321111114558999999999998853333343
Q ss_pred ccCCccccccCCCCccccccc-CCCCCCCEEEEe--CChhHHHHHHHHHHhcCCceeEE
Q psy16953 335 LKPGCFKIGNTGGMMDNILHS-KLYRPGSVAYVS--RSGGMSNELNNIISKATNGVYEG 390 (806)
Q Consensus 335 i~p~~~~ig~~~g~~~~~~~~-~~~~~G~ValvS--QSG~l~~~l~~~~~~~g~G~s~~ 390 (806)
..|- +... .....|.|+=|. -||+..+-+- ...+.|.-|+.+
T Consensus 141 giPi-------------i~~LrelL~~~~Ig~I~GIlnGT~nyilt-~m~~~g~~f~~~ 185 (444)
T 3mtj_A 141 GIPI-------------IKALREGLTANRIEWLAGIINGTSNFILS-EMRDKGAAFDDV 185 (444)
T ss_dssp TSCH-------------HHHHHTTTTTSCEEEEEEECCHHHHHHHH-HHHHHCCCHHHH
T ss_pred ChHH-------------HHHHHHHHhCCCCceEEEEEcCCcccccc-cCCCCCCCHHHH
Confidence 3443 1111 123446666554 4787766543 333445544443
No 231
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=54.96 E-value=19 Score=36.38 Aligned_cols=87 Identities=10% Similarity=0.163 Sum_probs=50.7
Q ss_pred eEEEEccCh---hHHHhhhhcc-cccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 204 KAIVWGMQT---RAVQSMLDFD-FVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~g-f~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
+|.|+|.+. ...++|.+.| + .|+-++++...-..+ .+..++.++.+..+++ ..|+.++ +
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~-----------~v~~~~r~~~~~~~~-~~~~g~~~~~~~~~~~--~~D~vi~---~ 64 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGY-----------RIYIANRGAEKRERL-EKELGVETSATLPELH--SDDVLIL---A 64 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSC-----------EEEEECSSHHHHHHH-HHHTCCEEESSCCCCC--TTSEEEE---C
T ss_pred EEEEECchHHHHHHHHHHHHCCCC-----------eEEEECCCHHHHHHH-HHhcCCEEeCCHHHHh--cCCEEEE---E
Confidence 688999763 2356777777 5 455555542100000 0112455666776743 5666555 5
Q ss_pred CChhhHHHHHHHhcCCCCCEEEEE-cCCCCH
Q psy16953 280 SLRSAYDSTIETLGFPQIRSIAII-AEGIPE 309 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~gvk~~vii-s~Gf~E 309 (806)
+|...+.++++++.. . ..+++- ++|++.
T Consensus 65 v~~~~~~~v~~~l~~-~-~~ivv~~~~g~~~ 93 (263)
T 1yqg_A 65 VKPQDMEAACKNIRT-N-GALVLSVAAGLSV 93 (263)
T ss_dssp SCHHHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred eCchhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence 568888888888764 4 445544 488885
No 232
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=54.92 E-value=7.9 Score=45.01 Aligned_cols=82 Identities=30% Similarity=0.308 Sum_probs=52.8
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc-cCCcc-h-HHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE-VGGVE-E-YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~-d-~~f~~ 435 (806)
..++|++|.-.|...... .. .+.. .--.+.+.|+.+.+|+++|+|++.++ .||-- . ..+.+
T Consensus 299 ~~~~VavI~l~g~i~~n~--------~~------~~~~--~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~ 362 (593)
T 3bf0_A 299 TGDSIGVVFANGAIMDGE--------ET------QGNV--GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 362 (593)
T ss_dssp CSCEEEEEEEEEEEESSS--------SC------TTSE--EHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHH
T ss_pred CCCCEEEEEEeeeecCCc--------cc------cchh--HHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 456799998888642110 00 0111 12346788889999999999999998 23222 2 34455
Q ss_pred HHHhcC-CCCCEEEEEeCcCcC
Q psy16953 436 ALKDKR-ITKPLVAWCIGTCAS 456 (806)
Q Consensus 436 a~r~~~-~~KPVV~lk~Grs~~ 456 (806)
.+++.. .+||||+...|.+..
T Consensus 363 ~i~~l~~~~kPVia~v~g~Aas 384 (593)
T 3bf0_A 363 ELAAARAAGKPVVVSMGGMAAS 384 (593)
T ss_dssp HHHHHHHTTCCEEEEEEEEEET
T ss_pred HHHHHHhCCCCEEEEECCChHH
Confidence 555543 679999999887664
No 233
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=54.75 E-value=4 Score=48.33 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=12.8
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+..|+++.+++. |++ |.... ..+|.+++.+....++ .++||||..--++|| |.+..+.+|+++.+++.
T Consensus 116 K~~~k~~l~~~GV--Pvp-p~~~~---~~~s~~e~~~~a~~ig-yPvVvKp~~ggggkG----v~iv~~~~el~~a~~~~ 184 (681)
T 3n6r_A 116 KITSKKIAQEANV--STV-PGYMG---LIEDADEAVKISNQIG-YPVMIKASAGGGGKG----MRIAWNDQEAREGFQSS 184 (681)
T ss_dssp HHHHHHHHHTTTC--CCC-CC-----------------------------------------------------------
T ss_pred HHHHHHHHHHcCc--CcC-Ccccc---CcCCHHHHHHHHHhcC-CcEEEEECCCCCCCC----EEEECCHHHHHHHHHHH
Confidence 4567888888887 665 43210 1467788877777776 699999997665554 66677888988887765
Q ss_pred c
Q psy16953 88 M 88 (806)
Q Consensus 88 ~ 88 (806)
.
T Consensus 185 ~ 185 (681)
T 3n6r_A 185 K 185 (681)
T ss_dssp -
T ss_pred H
Confidence 4
No 234
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=54.30 E-value=1e+02 Score=26.71 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=53.0
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-----CcchHHHHHH
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG-----GVEEYEVCAA 436 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig-----g~~d~~f~~a 436 (806)
+|-+|.........+...+.+. |+.. .... +..+.++++.+.+ ..+|++-++.. +....++++.
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~--g~~v-~~~~-------~~~~a~~~l~~~~-~dlvi~d~~~~~~~~~~~~g~~~~~~ 73 (140)
T 2qr3_A 5 TIIIVDDNKGVLTAVQLLLKNH--FSKV-ITLS-------SPVSLSTVLREEN-PEVVLLDMNFTSGINNGNEGLFWLHE 73 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT--SSEE-EEEC-------CHHHHHHHHHHSC-EEEEEEETTTTC-----CCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhC--CcEE-EEeC-------CHHHHHHHHHcCC-CCEEEEeCCcCCCCCCCccHHHHHHH
Confidence 5888888888888888777665 4432 2222 2457788877654 67777766643 2222778888
Q ss_pred HHhcCCCCCEEEEE
Q psy16953 437 LKDKRITKPLVAWC 450 (806)
Q Consensus 437 ~r~~~~~KPVV~lk 450 (806)
+++.....|||++-
T Consensus 74 l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 74 IKRQYRDLPVVLFT 87 (140)
T ss_dssp HHHHCTTCCEEEEE
T ss_pred HHhhCcCCCEEEEE
Confidence 88876788999884
No 235
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=54.21 E-value=14 Score=39.17 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=49.2
Q ss_pred ceEEEEccCh--h-HHHhhhhcccccccCCCcccceeEeecCCCcccccc---cc------eeecccccccHHHHhccCC
Q psy16953 203 TKAIVWGMQT--R-AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYW---GH------KEVLIPVYKKMEDAMSKNK 270 (806)
Q Consensus 203 t~v~V~G~~~--r-~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~---g~------~~i~~p~y~sv~daip~~~ 270 (806)
.+|.|+|.+. . ...+|.+.|+ .|+-++.+..+...+ |. ....+.++.+.++ +. ..
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~-----------~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~-~a 81 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGE-----------EVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK-KE 81 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC-TT
T ss_pred CcEEEECcCHHHHHHHHHHHhCCC-----------eEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc-CC
Confidence 4799999874 2 3567878776 566665531000000 00 0001345566655 33 34
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCH
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE 309 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E 309 (806)
|+.++ +++...+.++++.+...+ +.+|.++.|+..
T Consensus 82 DvVil---~vk~~~~~~v~~~l~~~~-~~vv~~~nGi~~ 116 (335)
T 1z82_A 82 DILVI---AIPVQYIREHLLRLPVKP-SMVLNLSKGIEI 116 (335)
T ss_dssp EEEEE---CSCGGGHHHHHTTCSSCC-SEEEECCCCCCT
T ss_pred CEEEE---ECCHHHHHHHHHHhCcCC-CEEEEEeCCCCC
Confidence 54444 556788999998876422 345555668865
No 236
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=54.01 E-value=40 Score=35.61 Aligned_cols=108 Identities=10% Similarity=0.119 Sum_probs=61.2
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc--cccccHHH-HhccCCCeeEEE
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI--PVYKKMED-AMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~--p~y~sv~d-aip~~~Dlaviv 276 (806)
.+|.|+|.+. ...+.|.+.|+ ...|+-++++...-.. ..+.|+ ..+.++.+ ++. ..|+.++
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~---------~~~V~~~dr~~~~~~~--a~~~G~~~~~~~~~~~~~~~-~aDvVil- 100 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGF---------KGKIYGYDINPESISK--AVDLGIIDEGTTSIAKVEDF-SPDFVML- 100 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTC---------CSEEEEECSCHHHHHH--HHHTTSCSEEESCTTGGGGG-CCSEEEE-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCC---------CCEEEEEECCHHHHHH--HHHCCCcchhcCCHHHHhhc-cCCEEEE-
Confidence 5899999763 34678888887 4577777765210000 001232 34566666 443 4566555
Q ss_pred eecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 277 NFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
++|...+.++++++.. ..-..+|+-.++......+++.+...+ +++|
T Consensus 101 --avp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~ 148 (314)
T 3ggo_A 101 --SSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVG 148 (314)
T ss_dssp --CSCGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEEC
T ss_pred --eCCHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEe
Confidence 5666777888877642 223345655566655444555544322 6666
No 237
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=53.38 E-value=5 Score=47.43 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=47.5
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+..|+++.+++. |++ |.... ..+|.+++.+....++ .++||||..--++|| |.+..|.+|+++.+++.
T Consensus 142 K~~~k~~l~~~GV--pvp-p~~~~---~~~s~~e~~~~a~~ig-yPvvvKp~~G~Gg~G----v~iv~~~~el~~a~~~~ 210 (675)
T 3u9t_A 142 KSAAKALMEEAGV--PLV-PGYHG---EAQDLETFRREAGRIG-YPVLLKAAAGGGGKG----MKVVEREAELAEALSSA 210 (675)
T ss_dssp HHHHHHHHHHTTC--CBC-CCCCS---CCCCTTHHHHHHHHSC-SSBCCBCCC----------CCCBCCTTTHHHHHSCC
T ss_pred HHHHHHHHHHcCc--CcC-Ccccc---CCCCHHHHHHHHHhCC-CcEEEEECCCCCCcc----EEEECCHHHHHHHHHHH
Confidence 4567888999888 665 43321 2457788877777776 699999998776665 67777889999888765
Q ss_pred cC
Q psy16953 88 MG 89 (806)
Q Consensus 88 ~g 89 (806)
..
T Consensus 211 ~~ 212 (675)
T 3u9t_A 211 QR 212 (675)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 238
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=52.06 E-value=1.2e+02 Score=26.65 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=73.3
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh-
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD- 439 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~- 439 (806)
-+|-+|...-.....+...+.+.| +. +....+ ..+.++++.+. ...+|++-++..+....++++.+++
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~g--~~-v~~~~~-------~~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~ 77 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEG--FD-IIQCGN-------AIEAVPVAVKT-HPHLIITEANMPKISGMDLFNSLKKN 77 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHT--EE-EEEESS-------HHHHHHHHHHH-CCSEEEEESCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcC--Ce-EEEeCC-------HHHHHHHHHcC-CCCEEEEcCCCCCCCHHHHHHHHHcC
Confidence 468899999888888888887754 43 333322 34777777664 3577877766444333788999988
Q ss_pred -cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 440 -KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 -~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
.....|||++-. .... . ....+ .++|+ ..+-+.++|...++.++...
T Consensus 78 ~~~~~~pii~ls~-~~~~-------------------~---~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 78 PQTASIPVIALSG-RATA-------------------K---EEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TTTTTSCEEEEES-SCCH-------------------H---HHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeC-CCCH-------------------H---HHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 456789998732 1111 0 12222 34554 33568889999888887665
No 239
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=51.51 E-value=45 Score=35.22 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc-ccc----CCccccccCCCC----ccccccc
Q psy16953 286 DSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG-GLK----PGCFKIGNTGGM----MDNILHS 355 (806)
Q Consensus 286 ~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G-ii~----p~~~~ig~~~g~----~~~~~~~ 355 (806)
...++.+.. .+|..+|.. .......+...+.+.++.++.|++-- +.+ |..+++...... ...++-
T Consensus 64 ~~~~~~li~~~~V~~iig~----~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~- 138 (392)
T 3lkb_A 64 QRFFEEAVDRFKIPVFLSY----ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIA- 138 (392)
T ss_dssp HHHHHHHHHTTCCSCEEEC----CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhcCcEEEEeC----CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHH-
Confidence 344555544 489877652 23445567778888999999987521 111 111111100000 000000
Q ss_pred CCCCCCCEEEEeCChhHHHH----HHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-
Q psy16953 356 KLYRPGSVAYVSRSGGMSNE----LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 356 ~~~~~G~ValvSQSG~l~~~----l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
..+..-+|++|......+.. +...+.+.|+-+......-. .+.++...+.-+.+. ...+|++..- -.+
T Consensus 139 ~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~---~~~d~~~~~~~l~~~-~~dav~~~~~---~~~a 211 (392)
T 3lkb_A 139 REKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGS---GNLDNTALLKRFEQA-GVEYVVHQNV---AGPV 211 (392)
T ss_dssp HHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCT---TCCCCHHHHHHHHHT-TCCEEEEESC---HHHH
T ss_pred HhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCC---CCcCHHHHHHHHHhc-CCCEEEEecC---cchH
Confidence 01234579999987766554 34455666765443333222 245677777776552 3446655443 344
Q ss_pred HHHHHHHHhcCCCCCEEEE
Q psy16953 431 YEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 431 ~~f~~a~r~~~~~KPVV~l 449 (806)
..|++++++...+.|++..
T Consensus 212 ~~~~~~~~~~g~~~~~~~~ 230 (392)
T 3lkb_A 212 ANILKDAKRLGLKMRHLGA 230 (392)
T ss_dssp HHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHcCCCceEEEe
Confidence 7788888887777777643
No 240
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=51.45 E-value=72 Score=33.08 Aligned_cols=86 Identities=9% Similarity=-0.027 Sum_probs=51.7
Q ss_pred CCeeEEEEEec--cccc--hhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC
Q psy16953 89 GKDQVVLITGG--GIAN--FTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP 164 (806)
Q Consensus 89 g~~i~~~~i~G--GI~~--~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~ 164 (806)
..+||+-.++- |..+ ...+. +|+-.|+++.-..+...++.+++.-.+.+.+++.+.++++-.+-++...+-..
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~---~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~ 80 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQID---NAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFG 80 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHH---HHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCcEEEEEEeCCcCcchhccHHHH---HHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCC
Confidence 35677766653 2221 12232 47777888743223456778899988999999998888876545776655333
Q ss_pred cchHHHHHHHHhc
Q psy16953 165 ETHMTAIVGMALG 177 (806)
Q Consensus 165 ~~~m~~~~~~a~~ 177 (806)
.+..+.++...++
T Consensus 81 ~s~~~~~~~~~~~ 93 (368)
T 4eyg_A 81 ITPAALAAAPLAT 93 (368)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3344444444444
No 241
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=51.38 E-value=43 Score=34.57 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHHHHHhhcCCCccEEEEEEcc------------CCcch----HHH----HHHHHhc-CCCCCEEEEEeCcCcCcCccc
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEV------------GGVEE----YEV----CAALKDK-RITKPLVAWCIGTCASMFTSE 461 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Ei------------gg~~d----~~f----~~a~r~~-~~~KPVV~lk~Grs~~~~g~~ 461 (806)
+.+.++.+.+||++|+|++-++- ....+ .++ .+.+++. ...||||+..-|.+-. |-+
T Consensus 56 L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G--G~~ 133 (263)
T 2j5g_A 56 FPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALL--HSE 133 (263)
T ss_dssp HHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEECS--CGG
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchH--HHH
Confidence 45667777788888888887650 00001 112 2223333 4789999999988773 665
Q ss_pred ccccccCCcCCCCcccHHHHHH-HHHHcCCcccCChhh-HHHHHH-HHHHhhhhCCccccCCCCCCCCCcccchHHhhcc
Q psy16953 462 VQFGHAGSCANSDAETAVVKNK-SLAQAGAHVPSSFDT-LGDIIG-SVYKDLVSRGDIVPQPELPPPTVPMDYSWARELG 538 (806)
Q Consensus 462 aa~sHtGalag~~~~~a~~~~a-a~~qaGvi~v~~~~E-L~~~~~-all~~L~~~g~i~~~~~~P~~~~PMd~~~a~~~g 538 (806)
-+...-=.++.++.. +-- -.-+.|++-.-.... |...+- .....+ =-...+++..+|++.|
T Consensus 134 LalacD~ria~~~a~----f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l------------lltG~~~~A~eA~~~G 197 (263)
T 2j5g_A 134 YILTTDIILASENTV----FQDMPHLNAGIVPGDGVHILWPLALGLYRGRYF------------LFTQEKLTAQQAYELN 197 (263)
T ss_dssp GGGGCSEEEEETTCE----ECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHH------------HHTTCCEEHHHHHHTT
T ss_pred HHHhCCEEEEcCCCE----EecCcccccccCCCccHHHHHHHHcCHHHHHHH------------HHcCCCCCHHHHHHCC
Confidence 555554444554443 323 344567654322211 222111 111122 1345678888899999
Q ss_pred ccc
Q psy16953 539 LIR 541 (806)
Q Consensus 539 ~~r 541 (806)
++.
T Consensus 198 Lv~ 200 (263)
T 2j5g_A 198 VVH 200 (263)
T ss_dssp SCS
T ss_pred Ccc
Confidence 863
No 242
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.98 E-value=19 Score=31.12 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=39.6
Q ss_pred chHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCC-CeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 10 TGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESS-KLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 10 ~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~-~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
.+|++|.+.++ +. .. ++...|.+... ....+..+ +-| |++.|+ -|-+-.+-+.+|+++|+++..
T Consensus 19 ~aK~~L~~~gi--~y----~~--idi~~d~~~~~-~~~~~~~G~~tV--P~I~i~----Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 19 RLKTALTANRI--AY----DE--VDIEHNRAAAE-FVGSVNGGNRTV--PTVKFA----DGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHTTC--CC----EE--EETTTCHHHHH-HHHHHSSSSSCS--CEEEET----TSCEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--ce----EE--EEcCCCHHHHH-HHHHHcCCCCEe--CEEEEe----CCEEEeCCCHHHHHHHHHHhc
Confidence 57999999977 22 22 33355554332 22222211 112 555553 134566789999999999998
Q ss_pred CCe
Q psy16953 89 GKD 91 (806)
Q Consensus 89 g~~ 91 (806)
|-+
T Consensus 84 gL~ 86 (92)
T 2lqo_A 84 GLE 86 (92)
T ss_dssp CCS
T ss_pred CCc
Confidence 865
No 243
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=50.59 E-value=1.3e+02 Score=26.29 Aligned_cols=115 Identities=6% Similarity=0.081 Sum_probs=73.6
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCCcchHHHHHHHHhc
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLLGEVGGVEEYEVCAALKDK 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~ 440 (806)
+|-+|.........+...+.+.|. .. ... .+..+.++.+.+ .....+|++-.+..+..-.++++.+++.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~--~v-~~~-------~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGN--EV-LTA-------SSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI 74 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC--EE-EEE-------SSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCc--eE-EEe-------CCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 588888888888888888877653 22 221 134577888774 3556778777664443337888888887
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
....|||++-. .... . ...-+.++|+ ..+.+.++|...++.++...
T Consensus 75 ~~~~~ii~ls~-~~~~-------------------~----~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 75 TPHMAVIILTG-HGDL-------------------D----NAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp CTTCEEEEEEC-TTCH-------------------H----HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEC-CCCH-------------------H----HHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 67788888732 2111 0 2222335564 34568889998888877543
No 244
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=50.08 E-value=21 Score=39.46 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=32.4
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCH-HHHHHHHHHHHHcCCeEEccCc
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E-~~~~~l~~~a~~~giriiGPN~ 331 (806)
.....+++++.|.+.++..+++ | +| .+...+.+..++.|++++||+.
T Consensus 52 ~~~d~~~l~~~a~~~~id~vv~---g-~e~~l~~~~~~~l~~~Gi~~~Gp~~ 99 (431)
T 3mjf_A 52 AATDIAGLLAFAQSHDIGLTIV---G-PEAPLVIGVVDAFRAAGLAIFGPTQ 99 (431)
T ss_dssp CTTCHHHHHHHHHHTTEEEEEE---C-SHHHHHTTHHHHHHHTTCCEESCCH
T ss_pred CcCCHHHHHHHHHHhCcCEEEE---C-CchHHHHHHHHHHHhcCCCeeCCCH
Confidence 3345677888887777775554 2 44 3345677778888999999974
No 245
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=49.54 E-value=1.1e+02 Score=25.69 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=52.5
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CcchHHHHHHHHhc
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG-GVEEYEVCAALKDK 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig-g~~d~~f~~a~r~~ 440 (806)
+|-+|..+-.....+...+.+.|. .. .... +..+.++++.+.+ ..+|++-.+.. +....++++.+++.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~--~v-~~~~-------~~~~a~~~~~~~~-~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGF--TV-DETT-------DGKGSVEQIRRDR-PDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTC--EE-EEEC-------CHHHHHHHHHHHC-CSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCc--eE-EEec-------CHHHHHHHHHhcC-CCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 588999999888888888887554 22 2222 2346777776543 56777766633 22227889999886
Q ss_pred --CCCCCEEEE
Q psy16953 441 --RITKPLVAW 449 (806)
Q Consensus 441 --~~~KPVV~l 449 (806)
....|||++
T Consensus 76 ~~~~~~~ii~~ 86 (127)
T 2gkg_A 76 DDLKNVPIVII 86 (127)
T ss_dssp TTTTTSCEEEE
T ss_pred ccccCCCEEEE
Confidence 467899998
No 246
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=49.10 E-value=17 Score=37.46 Aligned_cols=83 Identities=20% Similarity=0.061 Sum_probs=42.8
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhh-HHHHHH-HHHHhhhhCCcccc
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDT-LGDIIG-SVYKDLVSRGDIVP 518 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~E-L~~~~~-all~~L~~~g~i~~ 518 (806)
...||||+..-|.+-. .|-+-+...-=.++.++.. +---.-+.|++-...... |...+- .....+
T Consensus 99 ~~~kPvIAav~G~a~G-gG~~lalacD~ria~~~a~----f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l-------- 165 (263)
T 3lke_A 99 TSPKVTVALINGYAYG-GGFNMMLACDRRIALRRAK----FLENFHKMGISPDLGASYFLPRIIGYEQTMNL-------- 165 (263)
T ss_dssp TCSSEEEEEECSEEET-HHHHGGGGSSEEEEETTCE----EECCHHHHTCCCCTTHHHHHHHHHCHHHHHHH--------
T ss_pred hCCCCEEEEECCEeeH-HHHHHHHHCCEEEEcCCCE----EeCchHhhCCCCCccHHHHHHHHhCHHHHHHH--------
Confidence 4789999999998875 2444444443334444332 222334556653222211 111110 111111
Q ss_pred CCCCCCCCCcccchHHhhcccc
Q psy16953 519 QPELPPPTVPMDYSWARELGLI 540 (806)
Q Consensus 519 ~~~~P~~~~PMd~~~a~~~g~~ 540 (806)
=....+++..+|++.|++
T Consensus 166 ----~ltg~~~~a~eA~~~GLv 183 (263)
T 3lke_A 166 ----LLEGKLFTSEEALRLGLI 183 (263)
T ss_dssp ----HHHCCCEEHHHHHHHTSS
T ss_pred ----HHhCCCcCHHHHHHcCCC
Confidence 124457888889999986
No 247
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.97 E-value=56 Score=31.59 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=16.5
Q ss_pred ceEEEEccChhH----HHhhhhccc
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf 223 (806)
.+|+|.|.++.. ++.|++.|+
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~ 29 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF 29 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC
Confidence 579999998764 667777776
No 248
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=48.73 E-value=1.4e+02 Score=26.47 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=71.0
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|...-.....+...+.. |+.. .... +..+.++.+.+.....+|++-++..+..-.++++.+++..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~---~~~v-~~~~-------~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 74 (151)
T 3kcn_A 6 RILLVDDDYSLLNTLKRNLSF---DFEV-TTCE-------SGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLIS 74 (151)
T ss_dssp EEEEECSCHHHHHHHHHHHTT---TSEE-EEES-------SHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred eEEEEeCCHHHHHHHHHHhcc---CceE-EEeC-------CHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcC
Confidence 588888888887777776643 4332 2222 2458888887764467888877754543378888888876
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC-C----cccCChhhHHHHHHHHHHh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG-A----HVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG-v----i~v~~~~EL~~~~~all~~ 509 (806)
...|||++-. .... .....+++ +| + .-+-+.++|...++.++..
T Consensus 75 ~~~~ii~~s~-~~~~----------------------~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 75 PNSVYLMLTG-NQDL----------------------TTAMEAVN-EGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp SSCEEEEEEC-GGGH----------------------HHHHHHHH-HTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEC-CCCH----------------------HHHHHHHH-cCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 7788888732 1111 11233333 34 3 3355888888888877654
No 249
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=48.49 E-value=1.5e+02 Score=26.38 Aligned_cols=115 Identities=8% Similarity=0.015 Sum_probs=73.8
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhc
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDK 440 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~ 440 (806)
-+|-+|..+......+...+...| +. ++... +..+.++++.+.+ ..+|++-....+....++++.+++.
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~a~~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLG--CN-IITFT-------SPLDALEALKGTS-VQLVISDMRMPEMGGEVFLEQVAKS 76 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTT--CE-EEEES-------CHHHHHHHHTTSC-CSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcC--Ce-EEEeC-------CHHHHHHHHhcCC-CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 469999999998888888887754 43 22222 2457888877654 6788877664443337888888886
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHh
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~ 509 (806)
....|||++-. .... .....+++..|+ ..+-+.++|...++.++..
T Consensus 77 ~~~~~ii~ls~-~~~~----------------------~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 77 YPDIERVVISG-YADA----------------------QATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CTTSEEEEEEC-GGGH----------------------HHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEec-CCCH----------------------HHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 66789888732 1111 113344443323 2356888888888877653
No 250
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.46 E-value=1.4e+02 Score=25.99 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=74.6
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD 439 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~ 439 (806)
+-+|-+|..+-.....+...+.+.| +. +.... +..+.++++.+.+ ..+|++-.+..+....++++.+++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~a~~~l~~~~-~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAG--FH-IISAD-------SGGQCIDLLKKGF-SGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTT--CE-EEEES-------SHHHHHHHHHTCC-CEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCC--eE-EEEeC-------CHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4469999999998888888888764 43 22222 2457888877654 678877776444333788999988
Q ss_pred --cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhh
Q psy16953 440 --KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 --~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L 510 (806)
.....|||++-...... .....-..|+ +.. +..+-+.++|...++.++...
T Consensus 76 ~~~~~~~pii~~s~~~~~~---~~~~~~~~g~----~~~-------------l~kp~~~~~l~~~i~~~~~~~ 128 (142)
T 3cg4_A 76 NSLEQGIAIVMLTAKNAPD---AKMIGLQEYV----VDY-------------ITKPFDNEDLIEKTTFFMGFV 128 (142)
T ss_dssp TTCCTTEEEEEEECTTCCC---CSSTTGGGGE----EEE-------------EESSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCCCEEEEECCCCHH---HHHHHHhcCc----cEE-------------EeCCCCHHHHHHHHHHHHHHH
Confidence 45677888874432221 1111111111 110 133568889999888887765
No 251
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=48.35 E-value=10 Score=39.64 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=25.6
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhcc--ccccCCCeEEccCccccccCccCceeecCCHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNE--PWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
.+..|++|.+++. |++ +. + .+.+++.+.. ..++ .++||||..-.+++ +|.+..|.+|++++++
T Consensus 115 K~~~~~~l~~~gi--p~p-~~-~------~~~~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~ 179 (331)
T 2pn1_A 115 KYTMYEYCLRQGI--AHA-RT-Y------ATMASFEEALAAGEVQ-LPVFVKPRNGSASI----EVRRVETVEEVEQLFS 179 (331)
T ss_dssp HHHHHHHHHHHTC--CCC-CE-E------SSHHHHHHHHHTTSSC-SCEEEEESBC------------------------
T ss_pred HHHHHHHHHHcCC--CCC-cE-E------ecHHHhhhhhhcccCC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHHHH
Confidence 4566788888877 555 22 2 1344543322 2343 59999998766543 3666678899988876
Q ss_pred H
Q psy16953 86 E 86 (806)
Q Consensus 86 ~ 86 (806)
+
T Consensus 180 ~ 180 (331)
T 2pn1_A 180 K 180 (331)
T ss_dssp -
T ss_pred h
Confidence 5
No 252
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=48.29 E-value=23 Score=36.62 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcc-----------------h-HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVE-----------------E-YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~-----------------d-~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++ |-+ + ..+ .+..++. ...||||+..-|.+-.
T Consensus 41 L~~al~~~~~d~~vr~vVltg~--g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 115 (265)
T 3kqf_A 41 LQNILTQINEEANTRVVILTGA--GEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALG 115 (265)
T ss_dssp HHHHHHHHHTCTTCCEEEEEES--SSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHhcCCCceEEEEecC--CCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 4567777888999999999887 410 1 112 2223332 4789999999888764
No 253
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=47.45 E-value=20 Score=36.55 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=48.2
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~ 435 (806)
..+.|++|.-+|.+...+.+. +.+.|+.+.+ ++.|+|++|+. .||.-. ..+.+
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~-----------------------l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~ 61 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQ-----------------------FDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQ 61 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHH-----------------------HHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHH
T ss_pred CCCeEEEEEEeCEECHHHHHH-----------------------HHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHH
Confidence 446688888777666544322 3455666665 46999999998 444333 55666
Q ss_pred HHHhcCCCCCEEEEE---eCcCcC
Q psy16953 436 ALKDKRITKPLVAWC---IGTCAS 456 (806)
Q Consensus 436 a~r~~~~~KPVV~lk---~Grs~~ 456 (806)
.+++ .+||||++. .|....
T Consensus 62 ~i~~--~~~PVia~v~p~~G~Aas 83 (230)
T 3viv_A 62 RIQQ--SKIPVIIYVYPPGASAAS 83 (230)
T ss_dssp HHHT--CSSCEEEEECSTTCEEET
T ss_pred HHHh--CCCCEEEEEecCCCEEhH
Confidence 6665 679999999 666554
No 254
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=47.06 E-value=60 Score=34.14 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=54.0
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc-ccc-cccceeecccccccHHHHhccCCCeeEEE
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK-LKF-YWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~-~~~-~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
..+|.|+|.+.- ...+|.+.|++ + .-.|+-++++.. ++. .+ .+.|+.+..+..+++ ...|+.++
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~-----~--~~~V~v~~r~~~~~~~~~l--~~~G~~~~~~~~e~~-~~aDvVil- 90 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVL-----A--AHKIMASSPDMDLATVSAL--RKMGVKLTPHNKETV-QHSDVLFL- 90 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSS-----C--GGGEEEECSCTTSHHHHHH--HHHTCEEESCHHHHH-HHCSEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-----C--cceEEEECCCccHHHHHHH--HHcCCEEeCChHHHh-ccCCEEEE-
Confidence 357999998632 36788887720 0 014666665421 000 00 122466667777744 44676555
Q ss_pred eecCChhhHHHHHHHhcC-CCC-CEEEEEcCCCCHH
Q psy16953 277 NFASLRSAYDSTIETLGF-PQI-RSIAIIAEGIPEN 310 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~-~gv-k~~viis~Gf~E~ 310 (806)
+++...+.++++++.. ..- +.+|-++.|++..
T Consensus 91 --av~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~ 124 (322)
T 2izz_A 91 --AVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS 124 (322)
T ss_dssp --CSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHH
T ss_pred --EeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHH
Confidence 5567889999888752 111 2344456788753
No 255
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=46.43 E-value=84 Score=28.35 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=55.2
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCC-CccEEEEEEccCCcchHHHHHHHHhc
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADP-EVKMIVLLGEVGGVEEYEVCAALKDK 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp-~Tk~I~ly~Eigg~~d~~f~~a~r~~ 440 (806)
+|-+|.-.-.....+...+.+.| +.......+ ..+.++.+.+.+ ...+|++-.+..+..-.++++.+++.
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~g--~~v~~~~~~-------~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 108 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEG--FNIIDTAAD-------GEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEF 108 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT--CEEEEEESS-------HHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEEECC-------HHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhh
Confidence 69999999999988888888765 333212222 346777776542 45677776664443337889999887
Q ss_pred CCCCCEEEEE
Q psy16953 441 RITKPLVAWC 450 (806)
Q Consensus 441 ~~~KPVV~lk 450 (806)
....|||++-
T Consensus 109 ~~~~~ii~ls 118 (157)
T 3hzh_A 109 DKNARVIMIS 118 (157)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 7788998873
No 256
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=46.22 E-value=1.6e+02 Score=26.10 Aligned_cols=117 Identities=10% Similarity=0.118 Sum_probs=74.7
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhh--------cCCCccEEEEEEccCCcchHHH
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQ--------ADPEVKMIVLLGEVGGVEEYEV 433 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~--------~Dp~Tk~I~ly~Eigg~~d~~f 433 (806)
+|-+|.-.-.....+...+.+.|..... .... +..+.++++. ......+|++=++.++..-.++
T Consensus 6 ~ILivddd~~~~~~l~~~L~~~g~~~~v-~~~~-------~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~ 77 (152)
T 3heb_A 6 TIVMIEDDLGHARLIEKNIRRAGVNNEI-IAFT-------DGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDI 77 (152)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCCCCE-EEES-------SHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCcceE-EEeC-------CHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHH
Confidence 5888888888888888888876553222 2222 2357888885 4555677777666445444789
Q ss_pred HHHHHh--cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHH
Q psy16953 434 CAALKD--KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 434 ~~a~r~--~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all 507 (806)
++.+|+ .....|||++-...... ....+.++|+ .-+-+.++|...++.+.
T Consensus 78 ~~~lr~~~~~~~~pii~~t~~~~~~------------------------~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 78 LKLVKENPHTRRSPVVILTTTDDQR------------------------EIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHHHHHSTTTTTSCEEEEESCCCHH------------------------HHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCCHH------------------------HHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 999988 44678998884321111 2222345565 33568889988888876
Q ss_pred Hhh
Q psy16953 508 KDL 510 (806)
Q Consensus 508 ~~L 510 (806)
...
T Consensus 134 ~~~ 136 (152)
T 3heb_A 134 LFF 136 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 257
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=46.12 E-value=1.4e+02 Score=25.55 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=66.3
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|..+......+...+.+.| +.......+. .+.++.+.+. ...+|++-.+..+..-.++++.+++..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g--~~v~~~~~~~-------~~a~~~~~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND--IEILAELTEG-------GSAVQRVETL-KPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT--EEEEEEESSS-------TTHHHHHHHH-CCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC--cEEEEEcCCH-------HHHHHHHHhc-CCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 36778888888888888888765 3332122222 1344444332 346777776644433378999998876
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~ 509 (806)
...|||++-...... . .. -+.++|+ ..+-+.++|...++.++..
T Consensus 73 ~~~~ii~~s~~~~~~-------------------~----~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 73 YSGIIIIVSAKNDHF-------------------Y----GK-HCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CCSEEEEEECC---C-------------------T----HH-HHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCChH-------------------H----HH-HHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 778888774322221 0 12 2224453 3355778888888776654
No 258
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=45.66 E-value=44 Score=34.76 Aligned_cols=94 Identities=15% Similarity=0.027 Sum_probs=50.0
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCc----c---cccc--cceee-c-ccccccHHHH
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHK----L---KFYW--GHKEV-L-IPVYKKMEDA 265 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~----~---~~~~--g~~~i-~-~p~y~sv~da 265 (806)
...+|+|.|.++-. ++.|++.|+ .-.|+-+..... . +... +...+ + +.-..++.++
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~---------~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 93 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYE---------TYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHV 93 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCT---------TEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCC---------CcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHH
Confidence 45689999998754 677888773 123443322100 0 0000 01111 2 4455666665
Q ss_pred hcc-CCCeeEEEeecCChh-----------------hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 266 MSK-NKDADVLVNFASLRS-----------------AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 266 ip~-~~Dlavivi~~~~~~-----------------~~~~~le~~~~~gvk~~viis~ 305 (806)
+.+ .+|+ ||.++.... ....++++|.+.|++.+|.+|+
T Consensus 94 ~~~~~~d~--Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 94 IKERDVQV--IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp HHHHTCCE--EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HhhcCCCE--EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 443 3554 433433211 1356788898889998888875
No 259
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=45.47 E-value=18 Score=36.15 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=46.3
Q ss_pred EEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 390 GVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 390 ~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.|.+++. .+- .+..-|.++.+|+..+.|.+|+. .||.-. ..+.+.++. .++||++++.|.++.
T Consensus 29 iI~l~g~--I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~--~~~~V~t~~~G~AaS 98 (203)
T 3qwd_A 29 IIMLGSQ--IDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQH--IKPDVQTICIGMAAS 98 (203)
T ss_dssp EEEECSC--BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH--SSSCEEEEEEEEEET
T ss_pred EEEEcCE--ECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCcEEEEeeeehh
Confidence 6777877 443 23445667788888999999999 555544 567777777 469999999887664
No 260
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=45.27 E-value=19 Score=38.70 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=60.3
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+.+..+|+ +|+-.++... ...+...+.++.+++ ...|+.++
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~G~-----------~V~~~dr~~~-------~~~g~~~~~~l~ell-~~aDvVil-- 221 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAFDC-----------PISYFSRSKK-------PNTNYTYYGSVVELA-SNSDILVV-- 221 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTC-----------CEEEECSSCC-------TTCCSEEESCHHHHH-HTCSEEEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-----------EEEEECCCch-------hccCceecCCHHHHH-hcCCEEEE--
Confidence 445799999873 34667777776 5666666531 111445678898844 44566555
Q ss_pred ecCChhhH-----HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccC
Q psy16953 278 FASLRSAY-----DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPA 330 (806)
Q Consensus 278 ~~~~~~~~-----~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN 330 (806)
.+++.... .+.++.+. .| .++|-++--...+++.|.+..++..++-.|-+
T Consensus 222 ~vP~~~~t~~li~~~~l~~mk-~g--ailIn~srG~~vd~~aL~~aL~~g~i~ga~lD 276 (333)
T 3ba1_A 222 ACPLTPETTHIINREVIDALG-PK--GVLINIGRGPHVDEPELVSALVEGRLGGAGLD 276 (333)
T ss_dssp CSCCCGGGTTCBCHHHHHHHC-TT--CEEEECSCGGGBCHHHHHHHHHHTSSCEEEES
T ss_pred ecCCChHHHHHhhHHHHhcCC-CC--CEEEECCCCchhCHHHHHHHHHcCCCeEEEEe
Confidence 55443222 24555554 44 33443333333456677777777777766644
No 261
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=44.75 E-value=11 Score=38.15 Aligned_cols=66 Identities=14% Similarity=-0.008 Sum_probs=37.2
Q ss_pred hhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 8 EATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
.+..|++|.+++. |++ +... .++.+++.+....++ .++||||..--+++ +|.+..+.+|+++++++
T Consensus 89 K~~~~~~l~~~gi--~~p-~~~~-----~~~~~~~~~~~~~~~-~p~vvKp~~g~~~~----gv~~v~~~~el~~~~~~ 154 (280)
T 1uc8_A 89 KWATSVALAKAGL--PQP-KTAL-----ATDREEALRLMEAFG-YPVVLKPVIGSWGR----LLAXXXXXXXXXXXXXX 154 (280)
T ss_dssp HHHHHHHHHHTTC--CCC-CEEE-----ESSHHHHHHHHHHHC-SSEEEECSBCCBCS----HHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCc--CCC-CeEe-----eCCHHHHHHHHHHhC-CCEEEEECCCCCcc----cceecccccccchhhhh
Confidence 3556788888877 665 4444 456677655444444 59999999866543 34444566666666554
No 262
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=44.65 E-value=70 Score=33.48 Aligned_cols=130 Identities=9% Similarity=-0.049 Sum_probs=72.5
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCC------CC----CCCCHHHHHHHhh----cCCCccEEEEEEccCC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGD------RY----PGTTFMDHILRYQ----ADPEVKMIVLLGEVGG 427 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~------~~----~d~~~~D~l~~l~----~Dp~Tk~I~ly~Eigg 427 (806)
+||+|.-+|.++...+..+.+.+.-+..+++.-.+ .+ .-.++.|+++++. +|++..+|++..- .
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP--~ 82 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP--N 82 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC--G
T ss_pred EEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC--c
Confidence 47888777777777666666655433333332111 01 1135667775542 6899999877554 2
Q ss_pred cchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHH
Q psy16953 428 VEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVY 507 (806)
Q Consensus 428 ~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all 507 (806)
-...+.+..+- ..+|+|++=|+=... ...+....++.++.|+.....+.--++-.-..+
T Consensus 83 ~~H~~~~~~al--~aGkhVl~EKPla~~-------------------~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~ 141 (312)
T 3o9z_A 83 HLHYPQIRMAL--RLGANALSEKPLVLW-------------------PEEIARLKELEARTGRRVYTVLQLRVHPSLLAL 141 (312)
T ss_dssp GGHHHHHHHHH--HTTCEEEECSSSCSC-------------------HHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHH
T ss_pred hhhHHHHHHHH--HCCCeEEEECCCCCC-------------------HHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHH
Confidence 22244443332 367999986642211 123445777888999866544444444444445
Q ss_pred HhhhhCC
Q psy16953 508 KDLVSRG 514 (806)
Q Consensus 508 ~~L~~~g 514 (806)
++++++|
T Consensus 142 k~~i~~g 148 (312)
T 3o9z_A 142 KERLGQE 148 (312)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 5665555
No 263
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=44.36 E-value=1.7e+02 Score=25.95 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=75.4
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALK 438 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r 438 (806)
..-+|-+|.........+...+.+.| +. +.... +..+.++.+.+. ...+|++=++..+..-.++++.++
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~a~~~l~~~-~~dlvi~D~~l~~~~g~~~~~~l~ 81 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLP--YT-LHFAR-------DATQALQLLASR-EVDLVISAAHLPQMDGPTLLARIH 81 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSS--CE-EEEES-------SHHHHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccC--cE-EEEEC-------CHHHHHHHHHcC-CCCEEEEeCCCCcCcHHHHHHHHH
Confidence 34579999999999888888887764 33 22222 245777777654 367888777644443378889888
Q ss_pred hcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC-C----cccCChhhHHHHHHHHHHhh
Q psy16953 439 DKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG-A----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG-v----i~v~~~~EL~~~~~all~~L 510 (806)
+.....|||++-. .... . ....+ -++| + ..+-+.++|...++.++...
T Consensus 82 ~~~~~~~ii~~s~-~~~~-------------------~---~~~~~-~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 82 QQYPSTTRILLTG-DPDL-------------------K---LIAKA-INEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp HHCTTSEEEEECC-CCCH-------------------H---HHHHH-HHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred hHCCCCeEEEEEC-CCCH-------------------H---HHHHH-HhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 8667789888732 1111 1 12223 3444 3 34568889999888877644
No 264
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=43.84 E-value=2.7e+02 Score=28.49 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHHHHHhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--ccc--CCccccccCCCC----cccccccC
Q psy16953 286 DSTIETLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GLK--PGCFKIGNTGGM----MDNILHSK 356 (806)
Q Consensus 286 ~~~le~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii~--p~~~~ig~~~g~----~~~~~~~~ 356 (806)
...++.+. +.+|..+|.. ........+.+.+.+.++.++.|++.. +.. |..+++...... ...++-
T Consensus 61 ~~~~~~l~~~~~v~~iig~---~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 135 (358)
T 3hut_A 61 RTIARAFVDDPRVVGVLGD---FSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMI-- 135 (358)
T ss_dssp HHHHHHHHHCTTEEEEEEC---SSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHH--
T ss_pred HHHHHHHhccCCcEEEEcC---CCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHH--
Confidence 34455554 6777655432 223345566778888999999987532 211 111121100000 000000
Q ss_pred CCCCCCEEEEeCChhHHHHHH----HHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCCcch-
Q psy16953 357 LYRPGSVAYVSRSGGMSNELN----NIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 357 ~~~~G~ValvSQSG~l~~~l~----~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly~Eigg~~d- 430 (806)
....-+|++|......+.... ..+.+.|+-+......-. ...++...+..+.+ +| .+|++... ..+
T Consensus 136 ~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~l~~~~~--d~i~~~~~---~~~a 207 (358)
T 3hut_A 136 GDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPP---GNRRFDDVIDEIEDEAP--QAIYLAMA---YEDA 207 (358)
T ss_dssp HTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT---TCCCCHHHHHHHHHHCC--SEEEEESC---HHHH
T ss_pred HcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCC---CCccHHHHHHHHHhcCC--CEEEEccC---chHH
Confidence 123447999987766665544 345566665443333222 24566677776654 44 36666544 335
Q ss_pred HHHHHHHHhcCCCCCEEE
Q psy16953 431 YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 431 ~~f~~a~r~~~~~KPVV~ 448 (806)
..+++++++...+.|++.
T Consensus 208 ~~~~~~~~~~g~~~p~~~ 225 (358)
T 3hut_A 208 APFLRALRARGSALPVYG 225 (358)
T ss_dssp HHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHcCCCCcEEe
Confidence 778999998878888764
No 265
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=43.67 E-value=22 Score=37.96 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=50.1
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
..+|.|+|.+. ...++|.+.|+ .|+-.+++.....-. ..+.|+.++ ++.+++. ..|+.++
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~-----------~V~~~~~~~~~~~~~-a~~~G~~~~-~~~e~~~-~aDvVil--- 78 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV-----------DVTVGLRSGSATVAK-AEAHGLKVA-DVKTAVA-AADVVMI--- 78 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC-----------CEEEECCTTCHHHHH-HHHTTCEEE-CHHHHHH-TCSEEEE---
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC-----------EEEEEECChHHHHHH-HHHCCCEEc-cHHHHHh-cCCEEEE---
Confidence 35799999763 23678888886 344444432100000 011244455 7877544 5677665
Q ss_pred cCChhhHHHHHH-HhcC-CCCCEEEEEcCCCC
Q psy16953 279 ASLRSAYDSTIE-TLGF-PQIRSIAIIAEGIP 308 (806)
Q Consensus 279 ~~~~~~~~~~le-~~~~-~gvk~~viis~Gf~ 308 (806)
++|.....++++ ++.. ..-..+++..+|+.
T Consensus 79 avp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~ 110 (338)
T 1np3_A 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFS 110 (338)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHH
T ss_pred eCCcHHHHHHHHHHHHhhCCCCCEEEEcCCch
Confidence 667777788887 6542 22234666677763
No 266
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=43.62 E-value=6.9 Score=42.17 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=37.1
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccc-cccCccCceeecCCHHHHHHHHH
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLI-KRRGKLGLIKVNTDFKGAQSWIS 85 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~-~~RGK~Glv~l~~~~~e~~~~~~ 85 (806)
+..|++|.+++. |++ +... .++.+++.+ .++ .++||||...- +++ +|.+..|.+|++++++
T Consensus 102 ~~~~~~l~~~gi--p~p-~~~~-----~~~~~~~~~---~~~-~P~vvKp~~~~y~g~----Gv~~v~~~~el~~~~~ 163 (380)
T 3ax6_A 102 FVQKEFLKKNGI--PVP-EYKL-----VKDLESDVR---EFG-FPVVQKARKGGYDGR----GVFIIKNEKDLENAIK 163 (380)
T ss_dssp HHHHHHHHHTTC--CCC-CEEE-----CSSHHHHHH---TTC-SSEEEEESCCC---------EEEECSGGGGGGCCC
T ss_pred HHHHHHHHHcCC--CCC-CeEE-----eCCHHHHHH---hcC-CCEEEEecCCCCCCC----CeEEECCHHHHHHHhc
Confidence 456788888877 665 4443 456666222 233 59999999865 544 3566667788776543
No 267
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=43.44 E-value=1.7e+02 Score=25.63 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcC-CCccEEEEEEccCCcchHHHHHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQAD-PEVKMIVLLGEVGGVEEYEVCAA 436 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~D-p~Tk~I~ly~Eigg~~d~~f~~a 436 (806)
....+|-+|...-.....+...+.+.| ++.. +...+. .+.+..+.+. ....+|++-+...+....++++.
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g-~~~v-~~~~~~-------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 88 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAG-RYRV-TRTVGR-------AAQIVQRTDGLDAFDILMIDGAALDTAELAAIEK 88 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHC-SCEE-EEECCC-------HHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCC-CeEE-EEeCCH-------HHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHH
Confidence 345679999999999999888888866 1322 222222 2445555443 44567777766433222678888
Q ss_pred HHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 437 LKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 437 ~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
+++.....|||++-. .... . .... +.++|+ ..+-+.++|...++.++..-
T Consensus 89 l~~~~~~~~ii~lt~-~~~~-------------------~---~~~~-~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 89 LSRLHPGLTCLLVTT-DASS-------------------Q---TLLD-AMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHHCTTCEEEEEES-CCCH-------------------H---HHHH-HHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCcEEEEeC-CCCH-------------------H---HHHH-HHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 888666778888732 2221 0 0122 224554 34567888888887776543
No 268
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=43.32 E-value=1.6e+02 Score=25.47 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=75.1
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcC---------CCccEEEEEEccCCcch
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQAD---------PEVKMIVLLGEVGGVEE 430 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~D---------p~Tk~I~ly~Eigg~~d 430 (806)
.-+|-+|..+-.....+...+.+.|.... +.... +..+.++++.+. ....+|++-++..+...
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~-v~~~~-------~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNP-IYRCI-------TGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDG 77 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSC-EEEEC-------SHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCce-EEEEC-------CHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCH
Confidence 34699999999998888888887654211 22222 245788888752 44567777666444433
Q ss_pred HHHHHHHHhcC--CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHH
Q psy16953 431 YEVCAALKDKR--ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIG 504 (806)
Q Consensus 431 ~~f~~a~r~~~--~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~ 504 (806)
.++++.+++.. ...|||++-...... ....+ .++|+ ..+-+.++|...++
T Consensus 78 ~~~~~~l~~~~~~~~~~ii~~t~~~~~~-----------------------~~~~~-~~~g~~~~l~kP~~~~~l~~~i~ 133 (149)
T 1k66_A 78 REVLQEIKQDEVLKKIPVVIMTTSSNPK-----------------------DIEIC-YSYSISSYIVKPLEIDRLTETVQ 133 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEEESCCCHH-----------------------HHHHH-HHTTCSEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCeEEEEeCCCCHH-----------------------HHHHH-HHCCCCEEEeCCCCHHHHHHHHH
Confidence 78888888754 567998874211111 12223 34554 23568899999998
Q ss_pred HHHHhh
Q psy16953 505 SVYKDL 510 (806)
Q Consensus 505 all~~L 510 (806)
.++...
T Consensus 134 ~~~~~~ 139 (149)
T 1k66_A 134 TFIKYW 139 (149)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887655
No 269
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=42.90 E-value=1.6e+02 Score=30.39 Aligned_cols=209 Identities=8% Similarity=-0.009 Sum_probs=103.1
Q ss_pred CCeeEEEEEec--cccc--hhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC
Q psy16953 89 GKDQVVLITGG--GIAN--FTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP 164 (806)
Q Consensus 89 g~~i~~~~i~G--GI~~--~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~ 164 (806)
+.++++-+++- |..+ ...+. +|+-.|+++....+...++.+++.-.+.+.+++.+.+++.-++-++...+...
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~---~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 90 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAIT---RGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTV 90 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHH---HHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECS
T ss_pred CCCeEEEEEeCCCCcchhcCHHHH---HHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCC
Confidence 36777777663 3221 12233 47777887743222245588889988999999999999987655777655444
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChh-----HHHhhhhcccccccCCCcccceeEee
Q psy16953 165 ETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTR-----AVQSMLDFDFVCRRSEPSVAAMVYPF 239 (806)
Q Consensus 165 ~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r-----~~~~ll~~gf~~~~~~~~~~g~iypv 239 (806)
.+..+.++...++...+|--.+.. +.+.+.... ....+.-++.+.. ..+.|.+.|+ -+|.-+
T Consensus 91 ~s~~~~~~~~~~~~~~iP~v~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~----------~~ia~i 157 (375)
T 4evq_A 91 HSGVAMAMVKIAREDGIPTIVPNA--GADIITRAM-CAPNVFRTSFANGQIGRATGDAMIKAGL----------KKAVTV 157 (375)
T ss_dssp SHHHHHHHHHHHHHHCCCEEESSC--CCGGGGTTT-CCTTEEESSCCHHHHHHHHHHHHHHTTC----------CEEEEE
T ss_pred ccHHHHHHHHHHHHcCceEEecCC--CChhhcccC-CCCCEEEeeCChHhHHHHHHHHHHHcCC----------cEEEEE
Confidence 444444444444433333222211 111110000 0112222333322 2566777664 133333
Q ss_pred cCCCcccccccceeecccccccHHHHhccC-CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHH
Q psy16953 240 TGDHKLKFYWGHKEVLIPVYKKMEDAMSKN-KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLL 318 (806)
Q Consensus 240 np~~~~~~~~g~~~i~~p~y~sv~daip~~-~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~ 318 (806)
.++. .| +...+..+.+++.+. .++.....+..........++.+.+.+...+++.+.+ .....+.+.
T Consensus 158 ~~~~----~~-----~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~---~~a~~~~~~ 225 (375)
T 4evq_A 158 TWKY----AA-----GEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSG---GGALKFIKD 225 (375)
T ss_dssp EESS----HH-----HHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCT---HHHHHHHHH
T ss_pred ecCc----hH-----HHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCc---chHHHHHHH
Confidence 3331 11 222233333434332 2221111122223344566666655677776665544 345566677
Q ss_pred HHHcCCe
Q psy16953 319 AKEKGVS 325 (806)
Q Consensus 319 a~~~gir 325 (806)
+++.|++
T Consensus 226 ~~~~g~~ 232 (375)
T 4evq_A 226 YAAANLG 232 (375)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 7887754
No 270
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=42.60 E-value=49 Score=34.70 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCC-C-CCEEEEEcCCCC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFP-Q-IRSIAIIAEGIP 308 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~-g-vk~~viis~Gf~ 308 (806)
+.++.+.++ +.+..|+.++ +++.....++++.+... + =..+|.++.|+.
T Consensus 59 ~~~~~~~~~-~~~~~DlVil---avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 59 AAVVRSAAE-LETKPDCTLL---CIKVVEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp SCEESCGGG-CSSCCSEEEE---CCCCCTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred eeeECCHHH-cCCCCCEEEE---ecCCCChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 556778887 5556777666 66777778888887521 1 135677788986
No 271
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=42.51 E-value=52 Score=36.42 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=33.0
Q ss_pred hhhHHHHHHHhcCCCCCEEEEEcCCCCHH-HHHHHHHHHHHcCCeEEccCc
Q psy16953 282 RSAYDSTIETLGFPQIRSIAIIAEGIPEN-MTRKLNLLAKEKGVSIIGPAT 331 (806)
Q Consensus 282 ~~~~~~~le~~~~~gvk~~viis~Gf~E~-~~~~l~~~a~~~giriiGPN~ 331 (806)
....+++++.|.+.++..+++ | +|. +...+.+..++.|++++||+.
T Consensus 69 ~~d~~~l~~~a~~~~id~vv~---g-~E~~l~~~~~~~l~~~Gi~~~Gp~~ 115 (442)
T 3lp8_A 69 INSTIEVIQVCKKEKIELVVI---G-PETPLMNGLSDALTEEGILVFGPSK 115 (442)
T ss_dssp TTCHHHHHHHHHHTTCCEEEE---C-SHHHHHTTHHHHHHHTTCEEESCCH
T ss_pred cCCHHHHHHHHHHhCCCEEEE---C-CcHHHHHHHHHHHHhcCCcEecCCH
Confidence 345677888887788886665 2 453 344677777889999999974
No 272
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=42.42 E-value=40 Score=28.85 Aligned_cols=102 Identities=12% Similarity=-0.012 Sum_probs=55.0
Q ss_pred CCceEEEEccChhH----HHhhhhcc-cccccCCCcccceeEeecCCCcc--cc-cccceee--cccccccHHHHhccCC
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFD-FVCRRSEPSVAAMVYPFTGDHKL--KF-YWGHKEV--LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~g-f~~~~~~~~~~g~iypvnp~~~~--~~-~~g~~~i--~~p~y~sv~daip~~~ 270 (806)
...+|+|+|. +.. ++.|.+.| + .|+-+..+... .. ..|...+ .+.-..++.++ -..+
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~-----------~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~ 70 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNY-----------SVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKA-LGGF 70 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSE-----------EEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHH-TTTC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCc-----------eEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHH-HcCC
Confidence 3468999999 543 66777777 4 45555443110 00 0011111 13333456663 3456
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHH
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKE 321 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~ 321 (806)
|+.+. +.|......++++|.+.|++.+. +++.. ...+++.+++++
T Consensus 71 d~vi~---~~~~~~~~~~~~~~~~~g~~~~~-~~~~~--~~~~~~~~~~~~ 115 (118)
T 3ic5_A 71 DAVIS---AAPFFLTPIIAKAAKAAGAHYFD-LTEDV--AATNAVRALVED 115 (118)
T ss_dssp SEEEE---CSCGGGHHHHHHHHHHTTCEEEC-CCSCH--HHHHHHHHHHHC
T ss_pred CEEEE---CCCchhhHHHHHHHHHhCCCEEE-ecCcH--HHHHHHHHHHHh
Confidence 65444 44666778889999889988554 44332 234555555544
No 273
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=42.26 E-value=6.6 Score=49.29 Aligned_cols=71 Identities=6% Similarity=-0.091 Sum_probs=46.1
Q ss_pred chhchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHH
Q psy16953 7 SEATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISE 86 (806)
Q Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~ 86 (806)
..+.+|+++.+++. |++ +.... ..++.+++.+....++ .++||||..--++|| |.+..+.+|+++++++
T Consensus 118 DK~~~r~ll~~aGI--Pvp-p~~~~---~v~s~eea~~~a~~iG-yPvVVKP~~GgGg~G----v~vv~s~eeL~~a~~~ 186 (1150)
T 3hbl_A 118 DKVKARTTAIKADL--PVI-PGTDG---PIKSYELAKEFAEEAG-FPLMIKATSGGGGKG----MRIVREESELEDAFHR 186 (1150)
T ss_dssp SHHHHHHHHHHTTC--CBC-CBCSS---CBCSSSTTTTTGGGTC-SSEEEECCC-----------CEECCSSSCTHHHHS
T ss_pred CHHHHHHHHHHcCc--CCC-Ccccc---CCCCHHHHHHHHHHcC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHHH
Confidence 34677889999988 666 44410 1456777777666776 699999997776665 5666788898888876
Q ss_pred Hc
Q psy16953 87 RM 88 (806)
Q Consensus 87 ~~ 88 (806)
..
T Consensus 187 a~ 188 (1150)
T 3hbl_A 187 AK 188 (1150)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 274
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.23 E-value=1.6e+02 Score=25.08 Aligned_cols=81 Identities=7% Similarity=0.037 Sum_probs=53.8
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHH
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALK 438 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r 438 (806)
.+-+|-+|.........+...+.+.|. .. +... +..+.++.+.+.+ ..+|++-.+.++....++++.++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v-~~~~-------~~~~a~~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~ 74 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGA--TT-VLAA-------DGVDALELLGGFT-PDLMICDIAMPRMNGLKLLEHIR 74 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEES-------CHHHHHHHHTTCC-CSEEEECCC-----CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCc--eE-EEeC-------CHHHHHHHHhcCC-CCEEEEecCCCCCCHHHHHHHHH
Confidence 345799999999999888888888654 32 2221 3457888776543 56777765533322278888888
Q ss_pred hcCCCCCEEEEE
Q psy16953 439 DKRITKPLVAWC 450 (806)
Q Consensus 439 ~~~~~KPVV~lk 450 (806)
+.....|||++-
T Consensus 75 ~~~~~~~ii~~t 86 (130)
T 3eod_A 75 NRGDQTPVLVIS 86 (130)
T ss_dssp HTTCCCCEEEEE
T ss_pred hcCCCCCEEEEE
Confidence 866778998873
No 275
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=42.19 E-value=33 Score=35.09 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcc---h----------HHHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVE---E----------YEVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~---d----------~~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-+.+. | +.+.+..++. ...||||+..-|.+-.
T Consensus 38 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T 3p5m_A 38 LSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVG 105 (255)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCeehh
Confidence 557778888899999999988711110 1 1122222332 3789999999888774
No 276
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=42.00 E-value=24 Score=38.15 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+.+..+|+ +|+-.++...... ..+.+...+.++++++. ..|+.++
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-----------~V~~~d~~~~~~~---~~~~g~~~~~~l~ell~-~aDvV~l-- 229 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGF-----------NVLFYDPYLSDGV---ERALGLQRVSTLQDLLF-HSDCVTL-- 229 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-----------EEEEECTTSCTTH---HHHHTCEECSSHHHHHH-HCSEEEE--
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-----------EEEEECCCcchhh---HhhcCCeecCCHHHHHh-cCCEEEE--
Confidence 455799999873 34678888886 5666776532111 01223445568888544 4566554
Q ss_pred ecCChhhH-----HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 278 FASLRSAY-----DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 278 ~~~~~~~~-----~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.++..... .+.++.+. -.+++|-++--+-.+++.|.+..++.++.
T Consensus 230 ~~P~t~~t~~li~~~~l~~mk---~gailIN~arg~~vd~~aL~~aL~~g~i~ 279 (347)
T 1mx3_A 230 HCGLNEHNHHLINDFTVKQMR---QGAFLVNTARGGLVDEKALAQALKEGRIR 279 (347)
T ss_dssp CCCCCTTCTTSBSHHHHTTSC---TTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cCCCCHHHHHHhHHHHHhcCC---CCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence 55443332 23344333 23445444433335677788887877766
No 277
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=41.77 E-value=86 Score=33.62 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCC------cccccccceeecccccccHHHHhcc-CC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDH------KLKFYWGHKEVLIPVYKKMEDAMSK-NK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~------~~~~~~g~~~i~~p~y~sv~daip~-~~ 270 (806)
.+++|+|+|+++- .+++|...| .|.|+-+-++. ..-+++..+.+|.+--..+.+.+.+ .|
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~G----------vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp 104 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAG----------VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP 104 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHT----------CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC----------CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC
Confidence 5679999999864 588999999 68888885542 0113333344552221222222333 46
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
++.+-..........++.+ .+...+ |.+.. ..+....|.++|+++++.++--.+.|+.
T Consensus 105 ~v~v~~~~~~~~~~~~~~~-----~~~dvV-v~~~d-~~~~r~~ln~~~~~~~ip~i~~~~~G~~ 162 (346)
T 1y8q_A 105 MVDVKVDTEDIEKKPESFF-----TQFDAV-CLTCC-SRDVIVKVDQICHKNSIKFFTGDVFGYH 162 (346)
T ss_dssp TSEEEEECSCGGGCCHHHH-----TTCSEE-EEESC-CHHHHHHHHHHHHHTTCEEEEEEEEBTE
T ss_pred CeEEEEEecccCcchHHHh-----cCCCEE-EEcCC-CHHHHHHHHHHHHHcCCCEEEEeecccE
Confidence 6655522211111123333 344444 44433 3455667889999999999877777754
No 278
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=41.71 E-value=22 Score=35.40 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=45.3
Q ss_pred EEeecCCCCCCCC----HHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 390 GVAIGGDRYPGTT----FMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 390 ~vs~Gn~~~~d~~----~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.|.+++. .+-. +..-|.++.+|+..|.|.+|+. +||.-. ..+.+.++. .++||++++.|..+.
T Consensus 32 iI~l~g~--I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~--~~~~v~t~~~G~AaS 101 (201)
T 3p2l_A 32 IVFLNGE--VNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQF--IKPDVSTICIGLAAS 101 (201)
T ss_dssp EEEEESC--BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH--SSSCEEEEEEEEEET
T ss_pred EEEEcCE--ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEEcCEehh
Confidence 5677776 3332 3445667777888999999999 555544 567777777 458999999987765
No 279
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=41.56 E-value=2.4e+02 Score=29.25 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=52.6
Q ss_pred eeEEEEEe---ccccch--hhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCc
Q psy16953 91 DQVVLITG---GGIANF--TNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPE 165 (806)
Q Consensus 91 ~i~~~~i~---GGI~~~--~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~ 165 (806)
+||+-.++ |..+.. ..+. +|+-.|+++....+...++.++++-.+.+.+++.+..+++-+.-++...+-...
T Consensus 4 ~i~IG~~~p~sg~~a~~~g~~~~---~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~ 80 (375)
T 3i09_A 4 SVKIGFITDMSGLYADIDGQGGL---EAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTN 80 (375)
T ss_dssp SEEEEEEECSSSTTTTTSHHHHH---HHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred CeEEEEEeCCCcccccccCHHHH---HHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 45665554 444433 3344 478888888632333466889999999999999988888755456755443333
Q ss_pred chHHHHHHHHhcC
Q psy16953 166 THMTAIVGMALGK 178 (806)
Q Consensus 166 ~~m~~~~~~a~~~ 178 (806)
+..+.++...++.
T Consensus 81 s~~~~a~~~~~~~ 93 (375)
T 3i09_A 81 SATALSMNQVAAE 93 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4455555544443
No 280
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=41.52 E-value=19 Score=36.60 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=51.1
Q ss_pred CceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEee
Q psy16953 202 QTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 202 ~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~ 278 (806)
+.+|.|+|.+.- ..+.|.+.|+ . .|+-++++......+ .+.+++.++.++.++ -+..|+.++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~---------~-~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~Dvvi~--- 74 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGF---------R-IVQVYSRTEESAREL-AQKVEAEYTTDLAEV-NPYAKLYIV--- 74 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTC---------C-EEEEECSSHHHHHHH-HHHTTCEEESCGGGS-CSCCSEEEE---
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC---------e-EEEEEeCCHHHHHHH-HHHcCCceeCCHHHH-hcCCCEEEE---
Confidence 357999997532 3567777776 2 244455431100000 011246678888883 445666555
Q ss_pred cCChhhHHHHHHHhcC---CCCCEEEEEcCCCCH
Q psy16953 279 ASLRSAYDSTIETLGF---PQIRSIAIIAEGIPE 309 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~---~gvk~~viis~Gf~E 309 (806)
++|.....++++++.. .+ +.++-.++|++.
T Consensus 75 av~~~~~~~v~~~l~~~~~~~-~ivv~~s~~~~~ 107 (266)
T 3d1l_A 75 SLKDSAFAELLQGIVEGKREE-ALMVHTAGSIPM 107 (266)
T ss_dssp CCCHHHHHHHHHHHHTTCCTT-CEEEECCTTSCG
T ss_pred ecCHHHHHHHHHHHHhhcCCC-cEEEECCCCCch
Confidence 5566677888887753 22 234455667764
No 281
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=41.50 E-value=22 Score=37.04 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=36.3
Q ss_pred hchHHHHHhhCCCCcccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHc
Q psy16953 9 ATGKDIINRNLDPNTAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERM 88 (806)
Q Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~ 88 (806)
+..|++|.+++. |++ +. + +++++ +. .++||||..--+++| |.+..+.+|+++.+++..
T Consensus 102 ~~~~~~l~~~gi--p~p-~~-~------~~~~~-------l~-~P~vvKP~~g~~s~G----v~~v~~~~el~~~~~~~~ 159 (334)
T 2r85_A 102 NLERKWLKKAGI--RVP-EV-Y------EDPDD-------IE-KPVIVKPHGAKGGKG----YFLAKDPEDFWRKAEKFL 159 (334)
T ss_dssp HHHHHHHHHTTC--CCC-CB-C------SCGGG-------CC-SCEEEEECC----TT----CEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCC-Cc-c------CChHH-------cC-CCEEEEeCCCCCCCC----EEEECCHHHHHHHHHHHH
Confidence 445677777766 554 22 2 23443 22 699999998776654 556668899998887765
Q ss_pred C
Q psy16953 89 G 89 (806)
Q Consensus 89 g 89 (806)
.
T Consensus 160 ~ 160 (334)
T 2r85_A 160 G 160 (334)
T ss_dssp C
T ss_pred h
Confidence 3
No 282
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=41.46 E-value=1.5e+02 Score=29.93 Aligned_cols=20 Identities=0% Similarity=-0.054 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCCCEEEEEcC
Q psy16953 286 DSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~ 305 (806)
..++++|.+.|++.+|.+|+
T Consensus 100 ~~ll~a~~~~~v~~~v~~SS 119 (321)
T 3vps_A 100 RHLLALCTSVGVPKVVVGST 119 (321)
T ss_dssp HHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEecC
Confidence 45888888889999988886
No 283
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=41.38 E-value=18 Score=39.32 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=45.4
Q ss_pred cccccccHHHHhccCCCeeEEEeec------CChhhHHHHHHHhcCCCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCeEE
Q psy16953 255 LIPVYKKMEDAMSKNKDADVLVNFA------SLRSAYDSTIETLGFPQIRSIAIIAE-GIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 255 ~~p~y~sv~daip~~~Dlavivi~~------~~~~~~~~~le~~~~~gvk~~viis~-Gf~E~~~~~l~~~a~~~girii 327 (806)
++|.+.|+++|+...+|..++ -+ .|....+.+.+++. +|.. |+|+ ..+-.+..+|.++|++ |.+++
T Consensus 59 gipi~~~l~~al~~~~d~lvi--g~a~~gG~l~~~~~~~i~~Al~-~G~~---Vvsglh~~l~~~pel~~~A~~-g~~i~ 131 (349)
T 2obn_A 59 YVPIVKSVEAALEYKPQVLVI--GIAPKGGGIPDDYWIELKTALQ-AGMS---LVNGLHTPLANIPDLNALLQP-GQLIW 131 (349)
T ss_dssp CCCEESSHHHHGGGCCSEEEE--CCCCCCC-SCGGGHHHHHHHHH-TTCE---EEECSSSCCTTCHHHHHHCCT-TCCEE
T ss_pred CCCccCCHHHHHhCCCCEEEE--EecCCCCCCCHHHHHHHHHHHH-cCCc---EEeCccchhhCCHHHHHHHHc-CCEEE
Confidence 499999999998778887776 33 12344456666665 8875 3332 2333444568889999 99988
Q ss_pred cc
Q psy16953 328 GP 329 (806)
Q Consensus 328 GP 329 (806)
+=
T Consensus 132 dv 133 (349)
T 2obn_A 132 DV 133 (349)
T ss_dssp ET
T ss_pred Ee
Confidence 63
No 284
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=41.32 E-value=1.9e+02 Score=25.57 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=51.3
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|.........+...+.+.. |+..+....+ ..+.++.+.++....+|++-.+..+....++++.+++..
T Consensus 5 ~iLivdd~~~~~~~l~~~L~~~~-g~~~v~~~~~-------~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 5 VVLIVDDHHLIRAGAKNLLEGAF-SGMRVEGAET-------VSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFD 76 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHC-TTEEEEEESS-------HHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCC-CceEEEEecC-------HHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhC
Confidence 47788888888888887777651 3433333332 457888887645567777766533332277888888876
Q ss_pred CCCCEEEEE
Q psy16953 442 ITKPLVAWC 450 (806)
Q Consensus 442 ~~KPVV~lk 450 (806)
...|||++-
T Consensus 77 ~~~~ii~ls 85 (154)
T 2qsj_A 77 PSNAVALIS 85 (154)
T ss_dssp TTSEEEEC-
T ss_pred CCCeEEEEe
Confidence 678988873
No 285
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.28 E-value=1.9e+02 Score=25.63 Aligned_cols=79 Identities=9% Similarity=0.108 Sum_probs=54.9
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhc
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDK 440 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~ 440 (806)
-+|-+|..+......+...+.+.| +. +.... +..+.++++.+.+ ..+|++-++.++....++++.+++.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~a~~~l~~~~-~dliild~~l~~~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAG--FT-VSSFA-------SATEALAGLSADF-AGIVISDIRMPGMDGLALFRKILAL 72 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT--CE-EEEES-------CHHHHHHTCCTTC-CSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC--cE-EEEEC-------CHHHHHHHHHhCC-CCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 358889999888888888887754 43 22222 2457777776643 5788887765454447888888887
Q ss_pred CCCCCEEEEE
Q psy16953 441 RITKPLVAWC 450 (806)
Q Consensus 441 ~~~KPVV~lk 450 (806)
....|||++-
T Consensus 73 ~~~~pii~ls 82 (155)
T 1qkk_A 73 DPDLPMILVT 82 (155)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 6788999883
No 286
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=40.63 E-value=55 Score=35.23 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEc-CCCHHHHHHHHHHhcccCCccE
Q psy16953 81 QSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRA-GPNYQEGLRIIREVGKTLGIPL 159 (806)
Q Consensus 81 ~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~-G~n~~eG~~~l~~~g~~~g~~i 159 (806)
.+++++. .++.++++.+. ..+|. .+++++ .++.+|.+.+ |.+.-. +...++. ||++
T Consensus 63 ~~~~~~~--~~~d~li~~~~-~~i~~------~~l~~~---------p~Lk~I~~~g~G~d~id-~~~a~~~----gI~V 119 (340)
T 4dgs_A 63 PALEAAL--PSIRAVATGGG-AGLSN------EWMEKL---------PSLGIIAINGVGTDKVD-LARARRR----NIDV 119 (340)
T ss_dssp HHHHHHG--GGCCEEEEETT-TCBCH------HHHHHC---------SSCCEEEEESSCCTTBC-HHHHHHT----TCEE
T ss_pred HHHHHHh--CCcEEEEEcCC-CCCCH------HHHhhC---------CCCEEEEECCCCccccC-HHHHHhC----CEEE
Confidence 3445554 66777776543 22221 233322 3678888886 766321 3344454 5544
Q ss_pred EEeCCcchHHHHHHHHhcCC-----------------CCCCCCCCCCCcccccCCCCCCCceEEEEccCh---hHHHhhh
Q psy16953 160 FVFGPETHMTAIVGMALGKK-----------------EIPSETSADGATANFLLPGGQEQTKAIVWGMQT---RAVQSML 219 (806)
Q Consensus 160 ~~~~~~~~m~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~---r~~~~ll 219 (806)
.- .++.+-..+++.++.+- .|.... .+....--...++.|+|++. ...+++.
T Consensus 120 ~n-~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~~~~~~l~gktiGIIGlG~IG~~vA~~l~ 191 (340)
T 4dgs_A 120 TT-TPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE-------QLPLGHSPKGKRIGVLGLGQIGRALASRAE 191 (340)
T ss_dssp EC-CCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------------CCCCCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred EE-CCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc-------CcCccccccCCEEEEECCCHHHHHHHHHHH
Confidence 32 23445555666654421 233210 01111112456899999873 3467788
Q ss_pred hcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCChhhHH-----HHHHHhcC
Q psy16953 220 DFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYD-----STIETLGF 294 (806)
Q Consensus 220 ~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~~~~~-----~~le~~~~ 294 (806)
.+|+ +|+-.++... ...+...+.++.+++ +..|+.++ .++...... +.++.+.
T Consensus 192 ~~G~-----------~V~~~dr~~~-------~~~~~~~~~sl~ell-~~aDvVil--~vP~t~~t~~li~~~~l~~mk- 249 (340)
T 4dgs_A 192 AFGM-----------SVRYWNRSTL-------SGVDWIAHQSPVDLA-RDSDVLAV--CVAASAATQNIVDASLLQALG- 249 (340)
T ss_dssp TTTC-----------EEEEECSSCC-------TTSCCEECSSHHHHH-HTCSEEEE--CC----------CHHHHHHTT-
T ss_pred HCCC-----------EEEEEcCCcc-------cccCceecCCHHHHH-hcCCEEEE--eCCCCHHHHHHhhHHHHhcCC-
Confidence 8886 6777776531 122345578999954 44566555 444333333 3344444
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEc
Q psy16953 295 PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIG 328 (806)
Q Consensus 295 ~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiG 328 (806)
+| +++|-++--+--+++.|.+..++..+.-.|
T Consensus 250 ~g--ailIN~aRG~vvde~aL~~aL~~g~i~gA~ 281 (340)
T 4dgs_A 250 PE--GIVVNVARGNVVDEDALIEALKSGTIAGAG 281 (340)
T ss_dssp TT--CEEEECSCC--------------CCSSEEE
T ss_pred CC--CEEEECCCCcccCHHHHHHHHHcCCceEEE
Confidence 33 344433322345777788777776655444
No 287
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=40.31 E-value=31 Score=36.90 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=42.4
Q ss_pred cHHHHhccCCCeeEEEeecCCh----hhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 261 KMEDAMSKNKDADVLVNFASLR----SAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 261 sv~daip~~~Dlavivi~~~~~----~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
+.++.+ .+|+++++++.++. .+.+-+++++. +|. .+|+.....--...++|.++|+++|+++.=-.++|--.
T Consensus 78 d~~~ll--~~~iDvVv~~t~~~~~~~~~~~~~~~AL~-aGk-hVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~gi 153 (331)
T 3c8m_A 78 SASEAL--ARDFDIVVDATPASADGKKELAFYKETFE-NGK-DVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGV 153 (331)
T ss_dssp CHHHHH--HSSCSEEEECSCCCSSSHHHHHHHHHHHH-TTC-EEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred CHHHHh--CCCCCEEEECCCCCCccchHHHHHHHHHH-CCC-eEEecCchhhHHHHHHHHHHHHHcCCEEEEEeeccccc
Confidence 788855 34556665555442 34444555555 775 45442222111456789999999998875444444444
Q ss_pred C
Q psy16953 337 P 337 (806)
Q Consensus 337 p 337 (806)
|
T Consensus 154 P 154 (331)
T 3c8m_A 154 P 154 (331)
T ss_dssp C
T ss_pred H
Confidence 4
No 288
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=40.16 E-value=1.1e+02 Score=31.09 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=55.2
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc--cccccHHHHhccCCCeeEEEe
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI--PVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~--p~y~sv~daip~~~Dlavivi 277 (806)
.+|.|+|.+. ...+.|.+.|+ ...|+-++++...... ..+.++ ..+.++.+++....|+.++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~---------~~~V~~~d~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~aDvVil-- 68 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGF---------KGKIYGYDINPESISK--AVDLGIIDEGTTSIAKVEDFSPDFVML-- 68 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC---------CSEEEEECSCHHHHHH--HHHTTSCSEEESCGGGGGGTCCSEEEE--
T ss_pred cEEEEEecCHHHHHHHHHHHhcCC---------CcEEEEEeCCHHHHHH--HHHCCCcccccCCHHHHhcCCCCEEEE--
Confidence 3689999763 23567777775 3357766665210000 001132 1356777743315676555
Q ss_pred ecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHH
Q psy16953 278 FASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAK 320 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~ 320 (806)
++|.....++++++.. ..-..+++..++......+.+.+...
T Consensus 69 -avp~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~ 111 (281)
T 2g5c_A 69 -SSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG 111 (281)
T ss_dssp -CSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred -cCCHHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc
Confidence 5676677777776531 12234666666665544455555543
No 289
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.78 E-value=34 Score=36.31 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=80.8
Q ss_pred HHHHHHhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccccc--cCCccccccCCCCc----ccccccCCC
Q psy16953 286 DSTIETLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGL--KPGCFKIGNTGGMM----DNILHSKLY 358 (806)
Q Consensus 286 ~~~le~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii--~p~~~~ig~~~g~~----~~~~~~~~~ 358 (806)
...++.+. +.+|..++.. .......+...+.+.++.++.|++.--+ +|..+++....... ..++- ..+
T Consensus 65 ~~~~~~li~~~~V~~iiG~----~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~-~~~ 139 (391)
T 3eaf_A 65 EEYYREFRDRYGVIAIIGW----GTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLA-SEF 139 (391)
T ss_dssp HHHHHHHHHTTCCSEEEEC----CHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhhcCcEEEEEc----CcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHH-Hhc
Confidence 34445554 6889876652 2334556777888899999998864211 22212211000000 00000 002
Q ss_pred CCCCEEEEeC-ChhHHHHHHHH----HHhcCCceeEEEeecCCCCCCCCHHHHHHH--hhcCCCccEEEEEEccCCcch-
Q psy16953 359 RPGSVAYVSR-SGGMSNELNNI----ISKATNGVYEGVAIGGDRYPGTTFMDHILR--YQADPEVKMIVLLGEVGGVEE- 430 (806)
Q Consensus 359 ~~G~ValvSQ-SG~l~~~l~~~----~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~--l~~Dp~Tk~I~ly~Eigg~~d- 430 (806)
..-+|++|.. ....+....+. +.+.|+-+......-. .+.++...+.- +.+ ....+|++... ..+
T Consensus 140 g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~---~~~d~~~~~~~~~l~~-~~~dav~~~~~---~~~~ 212 (391)
T 3eaf_A 140 GQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPL---RATEADAERIAREMLA-ADPDYVWCGNT---ISSC 212 (391)
T ss_dssp CSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCT---TCCHHHHHHHHHHHHT-TCCSEEEECSC---HHHH
T ss_pred CCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCC---CCcCHHHHHHHHHHHH-cCCCEEEEecC---cHHH
Confidence 3457999998 55555554433 3444443322222221 24567777766 554 34456665443 345
Q ss_pred HHHHHHHHhcCCCCCEEE
Q psy16953 431 YEVCAALKDKRITKPLVA 448 (806)
Q Consensus 431 ~~f~~a~r~~~~~KPVV~ 448 (806)
..|++++++...+.|++.
T Consensus 213 ~~~~~~~~~~g~~~~~~~ 230 (391)
T 3eaf_A 213 SLLGRAMAKVGLDAFLLT 230 (391)
T ss_dssp HHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHCCCCceEEE
Confidence 778898888877778764
No 290
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=39.61 E-value=1.4e+02 Score=30.04 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=29.8
Q ss_pred ccccccHHHHhccCCCeeEEEeecCCh-------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLR-------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~-------~~~~~~le~~~~~gvk~~viis~ 305 (806)
+.-..++.+++ +.+|..+. .+... .....++++|.+.|++.+|.+|+
T Consensus 53 ~~d~~~l~~~~-~~~d~vi~--~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 53 YFNQESMVEAF-KGMDTVVF--IPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp TTCHHHHHHHT-TTCSEEEE--CCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCHHHHHHHH-hCCCEEEE--eCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 44456677744 34665443 33321 33457888998899998888876
No 291
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=39.46 E-value=26 Score=35.23 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCceeEEEeecCCCCCCC----CHHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCCE
Q psy16953 374 NELNNIISKATNGVYEGVAIGGDRYPGT----TFMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKPL 446 (806)
Q Consensus 374 ~~l~~~~~~~g~G~s~~vs~Gn~~~~d~----~~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KPV 446 (806)
..+.+.+.+ ...|-+++. .+- .+..-|.++.+|+. +.|++|+. +||.-. ..+.+.+++. ++||
T Consensus 30 ~d~~~~l~~-----~riI~l~G~--I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~--~~pV 99 (215)
T 2f6i_A 30 KDVKLFFFK-----KRIIYLTDE--INKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYI--KSDI 99 (215)
T ss_dssp HHHHHHHHT-----TTEEEECSC--BCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHS--SSCE
T ss_pred ccHHHHHhC-----ceEEEEccE--ECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhc--CCCE
Confidence 344444443 345677777 332 23344555655555 99999999 566555 6677888874 4799
Q ss_pred EEEEeCcCcC
Q psy16953 447 VAWCIGTCAS 456 (806)
Q Consensus 447 V~lk~Grs~~ 456 (806)
++++.|..+.
T Consensus 100 ~t~v~g~AAS 109 (215)
T 2f6i_A 100 QTISFGLVAS 109 (215)
T ss_dssp EEEEEEEECH
T ss_pred EEEEeeEhHh
Confidence 9999887654
No 292
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=39.15 E-value=1.9e+02 Score=25.00 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=52.6
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcC----CCccEEEEEEccCCcchHHHHHHH
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQAD----PEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~D----p~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
+|-+|..+......+...+...|. ...+..-+ +..+.++++.+. ....+|++=++..+..-.++++.+
T Consensus 11 ~iLivdd~~~~~~~l~~~l~~~~~--~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 82 (146)
T 3ilh_A 11 SVLLIDDDDIVNFLNTTIIRMTHR--VEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLF 82 (146)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTCC--EEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCC--CeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 588999998887777777776544 22222222 245777777652 445788877765454447889998
Q ss_pred Hh----cCCCCCEEEE
Q psy16953 438 KD----KRITKPLVAW 449 (806)
Q Consensus 438 r~----~~~~KPVV~l 449 (806)
++ .....|||++
T Consensus 83 ~~~~~~~~~~~~ii~~ 98 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLL 98 (146)
T ss_dssp HHHCGGGTTTCEEEEE
T ss_pred HHhhhhccCCCeEEEE
Confidence 88 4567788877
No 293
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.79 E-value=1.9e+02 Score=25.11 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=67.0
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|.-+-.....+...+.. .|+. +....+ ..+.++++.+. ...+|++=+...+..-.++++.+++..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~--~g~~-v~~~~~-------~~~a~~~l~~~-~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKD--EPYD-IFHVET-------GRDAIQFIERS-KPQLIILDLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTT--SSSE-EEEESS-------HHHHHHHHHHH-CCSEEEECSBCSSSBHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHh--cCce-EEEeCC-------HHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 588888888887777766654 3554 222222 34677766553 245666655533433377888888866
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCc----ccCChhhHHHHHHHHHHh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH----VPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi----~v~~~~EL~~~~~all~~ 509 (806)
...|||++-. .... . ...-+-++|+. .+-+.++|...++.++..
T Consensus 75 ~~~~ii~ls~-~~~~-------------------~----~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 75 IPTSVIIATA-HGSV-------------------D----LAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp CCCEEEEEES-SCCH-------------------H----HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEe-cCcH-------------------H----HHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 6778887732 2111 0 11222345552 456888998888877654
No 294
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=38.40 E-value=47 Score=35.49 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred cHHHHhccCCCeeEEEeecCChhh----HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCcccccc
Q psy16953 261 KMEDAMSKNKDADVLVNFASLRSA----YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLK 336 (806)
Q Consensus 261 sv~daip~~~Dlavivi~~~~~~~----~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~ 336 (806)
+..+.+ ..+|++++|.+.++... .+-+.+++. +|.. +|+-.-+.-.+.-++|.++|+++|+++.=..+.|.-.
T Consensus 73 d~~e~l-~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~-aGkh-VVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~gi 149 (325)
T 3ing_A 73 SGPEDL-MGEAADLLVDCTPASRDGVREYSLYRMAFE-SGMN-VVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGV 149 (325)
T ss_dssp CSGGGG-TTSCCSEEEECCCCCSSSHHHHHHHHHHHH-TTCE-EEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred CHHHHh-cCCCCCEEEECCCCccccchHHHHHHHHHH-CCCe-EEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccC
Confidence 445523 33455566556554322 244444444 7765 4432222212566789999999999887666666555
Q ss_pred CCccccccCCCCccccccc-CCCCCCCEEEEe--CChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHH-----
Q psy16953 337 PGCFKIGNTGGMMDNILHS-KLYRPGSVAYVS--RSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHIL----- 408 (806)
Q Consensus 337 p~~~~ig~~~g~~~~~~~~-~~~~~G~ValvS--QSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~----- 408 (806)
|- +... .....+.|.-|. -||+..+-+..+ +.| .+|.|.|.
T Consensus 150 Pi-------------i~~l~~~l~g~~I~~i~Gi~nGT~nyil~~m--~~g----------------~~f~~~l~~Aq~~ 198 (325)
T 3ing_A 150 PL-------------FSVLDYSILPSKVKRFRGIVSSTINYVIRNM--ANG----------------RSLRDVVDDAIKK 198 (325)
T ss_dssp CC-------------HHHHHHTCTTCCEEEEEEECCHHHHHHHHHH--HTT----------------CCHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHhhCCCeeEEEEEEEeeeeEEeecc--cCC----------------CCHHHHHHHHHHc
Confidence 54 1111 113446676664 688876554443 433 34566655
Q ss_pred -HhhcCCCccEEEEEEccCCcch-HHHHHHHHhc
Q psy16953 409 -RYQADPEVKMIVLLGEVGGVEE-YEVCAALKDK 440 (806)
Q Consensus 409 -~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~ 440 (806)
|-+.||.-.+ | |..- ++++=.++.+
T Consensus 199 GyaE~DP~~Dv-----~--G~D~a~Kl~ILa~~~ 225 (325)
T 3ing_A 199 GIAESNPQDDL-----N--GLDAARKSVILVNHI 225 (325)
T ss_dssp TCSCSSTHHHH-----T--THHHHHHHHHHHHHH
T ss_pred CCCCCCccccc-----C--ChhHHHHHHHHHHHH
Confidence 4455665432 4 6655 6655555543
No 295
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Probab=38.12 E-value=1.2e+02 Score=30.67 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=14.1
Q ss_pred eEEEEccChhH----HHhhhhcc
Q psy16953 204 KAIVWGMQTRA----VQSMLDFD 222 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~g 222 (806)
+|+|.|.++.. ++.|++.|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g 23 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKG 23 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTT
T ss_pred CEEEEcCccHHHHHHHHHHHHCC
Confidence 47899988764 56777777
No 296
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=37.59 E-value=2e+02 Score=24.76 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=70.7
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|.........+...+.+. |+. +.... +..+.++++.+. ...+|++-.+..+....++++.+++..
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~--~~~-v~~~~-------~~~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISNH--FPE-VWSAG-------DGEEGERLFGLH-APDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHTT--CSC-EEEES-------SHHHHHHHHHHH-CCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhc--CcE-EEEEC-------CHHHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 5999999999888888887763 322 22222 234677776653 346777766544433378899998876
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
...|||++- +.... . ....+.++|+ ..+-+.++|...++.+...-
T Consensus 78 ~~~~ii~~s-~~~~~-------------------~----~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 78 AKPYVIVIS-AFSEM-------------------K----YFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCCEEEECC-CCCCH-------------------H----HHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEe-cCcCh-------------------H----HHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 677877762 22111 0 2222335554 34568899988888877644
No 297
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=37.38 E-value=92 Score=30.00 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=48.5
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCccc-ccccceee-c-ccc-cccHHHHhccCCCeeEE
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK-FYWGHKEV-L-IPV-YKKMEDAMSKNKDADVL 275 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~-~~~g~~~i-~-~p~-y~sv~daip~~~Dlavi 275 (806)
+|+|.|.++.. ++.|++.|+ +|+-+..+.... ..-+.+.+ + +.- ..++.+++ +.+|..+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-----------~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-~~~d~vi- 68 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-----------QIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQL-HGMDAII- 68 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-----------EEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTT-TTCSEEE-
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-----------EEEEEECCccchhhcCCceEEEecccCCHHHHHHHH-cCCCEEE-
Confidence 68999988764 667777776 444444321100 00011112 1 333 45666643 3455433
Q ss_pred EeecCCh---------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 276 VNFASLR---------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 276 vi~~~~~---------~~~~~~le~~~~~gvk~~viis~ 305 (806)
..+... .....++++|.+.+++.+|.+|+
T Consensus 69 -~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 69 -NVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp -ECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred -ECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 344322 12556888888888988888886
No 298
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=37.12 E-value=28 Score=36.53 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCceeEEEeecCCCCCCCC----HHHHHHHhhcCCCccEEEEEEc-cCCcch--HHHHHHHHhcCCCCC
Q psy16953 373 SNELNNIISKATNGVYEGVAIGGDRYPGTT----FMDHILRYQADPEVKMIVLLGE-VGGVEE--YEVCAALKDKRITKP 445 (806)
Q Consensus 373 ~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~----~~D~l~~l~~Dp~Tk~I~ly~E-igg~~d--~~f~~a~r~~~~~KP 445 (806)
...+.+.+-+. ..|.+++. .+-. +..-|.++..++..|.|.+|+. .||.-. ..+.+.++.. ++|
T Consensus 72 ~~di~s~ll~e-----rII~l~G~--I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~--k~p 142 (277)
T 1tg6_A 72 AYDIYSRLLRE-----RIVCVMGP--IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI--LNP 142 (277)
T ss_dssp -CBHHHHHHTT-----TEEEEESS--BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--CSC
T ss_pred cccHHHHhhcC-----cEEEEcCE--ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCC
Confidence 34455555443 35777777 4332 2334556656556799999999 555554 6677788774 589
Q ss_pred EEEEEeCcCcC
Q psy16953 446 LVAWCIGTCAS 456 (806)
Q Consensus 446 VV~lk~Grs~~ 456 (806)
|++++.|..+.
T Consensus 143 V~t~v~G~AAS 153 (277)
T 1tg6_A 143 ICTWCVGQAAS 153 (277)
T ss_dssp EEEEEEEEEET
T ss_pred EEEEEccEeHH
Confidence 99999887765
No 299
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.39 E-value=2.3e+02 Score=25.19 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD 439 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~ 439 (806)
+.+|-+|...-.....+...+.+.| +.. ... .+..+.++.+.+. ...+|++-++..+..-.++++.+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g--~~v-~~~-------~~~~~al~~l~~~-~~dlii~D~~l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETG--YQT-EHV-------RNGREAVRFLSLT-RPDLIISDVLMPEMDGYALCRWLKG 75 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTT--CEE-EEE-------SSHHHHHHHHTTC-CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCC--CEE-EEe-------CCHHHHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4579999999999988888887765 332 222 1345788887654 3678888777445433788888887
Q ss_pred cC--CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 440 KR--ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 ~~--~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
.. ...|||++-. .... . ....+.++|+ ..+-+.++|...++.++...
T Consensus 76 ~~~~~~~pii~~s~-~~~~-------------------~----~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 76 QPDLRTIPVILLTI-LSDP-------------------R----DVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp STTTTTSCEEEEEC-CCSH-------------------H----HHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCEEEEEC-CCCh-------------------H----HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 53 5789888742 2111 1 2222334554 34568899999998888766
No 300
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=36.14 E-value=2.3e+02 Score=25.00 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=75.0
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
..+.+|-+|...-.+...+...+.+.| ....+..-++ ..+.++++.+. ...+|++-.+.++....++++.+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~--~~~~v~~~~~------~~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l 83 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSG--SVNVVGEADD------GAAALELIKAH-LPDVALLDYRMPGMDGAQVAAAV 83 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHS--SEEEEEEESS------HHHHHHHHHHH-CCSEEEEETTCSSSCHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCC--CeEEEEEeCC------HHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHH
Confidence 345679999999999998888887764 3333432222 45777777654 35677776664444447889999
Q ss_pred HhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHh
Q psy16953 438 KDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKD 509 (806)
Q Consensus 438 r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~ 509 (806)
++.....|||++-. .... . ....+.++|+ ..+.+.++|.+.++.++..
T Consensus 84 ~~~~~~~~ii~~s~-~~~~-------------------~----~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 84 RSYELPTRVLLISA-HDEP-------------------A----IVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HHTTCSCEEEEEES-CCCH-------------------H----HHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HhcCCCCeEEEEEc-cCCH-------------------H----HHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 88767778888732 2221 0 2222334564 2355788888888777654
No 301
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=36.06 E-value=1.5e+02 Score=25.96 Aligned_cols=81 Identities=6% Similarity=-0.080 Sum_probs=49.5
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|.-+-.....+...+...+.|+...-...+ ..+.++++.+. ...+|++-+..++..-.++++.+++..
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~-------~~~al~~~~~~-~~dlvllD~~lp~~~g~~l~~~l~~~~ 75 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADD-------GINAIQIALKH-PPNVLLTDVRMPRMDGIELVDNILKLY 75 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESS-------HHHHHHHHTTS-CCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeeccc-------HHHHHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 3666776666666665555444556553312222 35777777553 356777766644443378888888866
Q ss_pred CCCCEEEEE
Q psy16953 442 ITKPLVAWC 450 (806)
Q Consensus 442 ~~KPVV~lk 450 (806)
...|||++-
T Consensus 76 ~~~~ii~ls 84 (141)
T 3cu5_A 76 PDCSVIFMS 84 (141)
T ss_dssp TTCEEEEEC
T ss_pred CCCcEEEEe
Confidence 677888773
No 302
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.05 E-value=1.6e+02 Score=27.86 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcc-cCceEEEEEcCCCHHHHHHHHHHhc
Q psy16953 74 NTDFKGAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIE-HKISIFVRRAGPNYQEGLRIIREVG 152 (806)
Q Consensus 74 ~~~~~e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~-~~~~ivvR~~G~n~~eG~~~l~~~g 152 (806)
+.++++..+.+++. ...++.+..-.+..-+- ++-+++++++ .. .+++|+| +|+-..+-...+++.
T Consensus 55 ~~p~e~lv~aa~~~---~~diV~lS~~~~~~~~~---~~~~i~~L~~-----~g~~~i~v~v--GG~~~~~~~~~l~~~- 120 (161)
T 2yxb_A 55 RQTPEQVAMAAVQE---DVDVIGVSILNGAHLHL---MKRLMAKLRE-----LGADDIPVVL--GGTIPIPDLEPLRSL- 120 (161)
T ss_dssp BCCHHHHHHHHHHT---TCSEEEEEESSSCHHHH---HHHHHHHHHH-----TTCTTSCEEE--EECCCHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHhc---CCCEEEEEeechhhHHH---HHHHHHHHHh-----cCCCCCEEEE--eCCCchhcHHHHHHC-
Confidence 45777777766664 33444444433332222 2458888888 43 3688887 476656556667777
Q ss_pred ccCCccEEEeCCcchHHHHHHHHhcC
Q psy16953 153 KTLGIPLFVFGPETHMTAIVGMALGK 178 (806)
Q Consensus 153 ~~~g~~i~~~~~~~~m~~~~~~a~~~ 178 (806)
|+. .+|++++++.++++.+.+.
T Consensus 121 ---G~d-~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 121 ---GIR-EIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp ---TCC-EEECTTCCHHHHHHHHHHH
T ss_pred ---CCc-EEECCCCCHHHHHHHHHHH
Confidence 565 4688888888888776553
No 303
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.88 E-value=2.1e+02 Score=24.58 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCEEEEeCChhHHHHHHHHHHh-cCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh
Q psy16953 361 GSVAYVSRSGGMSNELNNIISK-ATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD 439 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~-~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~ 439 (806)
-+|-+|...-.....+...+.+ .|.- .+....+ ..+.++++.+.+ ..+|++-.+..+....++++.+++
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~--~v~~~~~-------~~~a~~~l~~~~-~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYA--KIKIAYN-------PFDAGDLLHTVK-PDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTC--EEEEECS-------HHHHHHHHHHTC-CSEEEEETTCTTSCHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcc--EEEEECC-------HHHHHHHHHhcC-CCEEEEecccCCCcHHHHHHHHHh
Confidence 4689999999988888888877 5543 2222222 346777776654 577877766434333788899888
Q ss_pred --cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 440 --KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 --~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
.....|||++-. .... . ....+.++|+ ..+-+.++|...++.++..-
T Consensus 79 ~~~~~~~~ii~~s~-~~~~-------------------~----~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 79 TPATANIIVIAMTG-ALTD-------------------D----NVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp STTTTTSEEEEEES-SCCH-------------------H----HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CccccCCcEEEEeC-CCCH-------------------H----HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 346778888732 2111 0 1122234554 33567888888887776544
No 304
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=35.86 E-value=1.4e+02 Score=29.80 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=56.4
Q ss_pred CCCCEEEEeCC-h-hHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHH
Q psy16953 359 RPGSVAYVSRS-G-GMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQS-G-~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~ 435 (806)
..|.+.+|+-. | ++|.++...+.++|. .++-++.. .-...+..+.+.+.+..++..+.+.+....+ +++++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~---~V~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA---DVVISDYH---ERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC---EEEEEESC---HHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC---EEEEecCC---HHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 46889999987 7 799999999998864 34445444 2234566666766666677777666333333 44444
Q ss_pred HHHhcCCCCCEEEEEeCcCc
Q psy16953 436 ALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 436 a~r~~~~~KPVV~lk~Grs~ 455 (806)
.+.+.-.+.=+++..+|...
T Consensus 94 ~~~~~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHhCCCcEEEECCCcCC
Confidence 44332223456777666443
No 305
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=35.81 E-value=85 Score=31.76 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=54.1
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecc--cccccHHHHhccCCCeeEEEee
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI--PVYKKMEDAMSKNKDADVLVNF 278 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~--p~y~sv~daip~~~Dlavivi~ 278 (806)
+|.|+|.+. ...+.|.+.|+ .|+-++++......+ .+.++ .++.++.+ + ...|+.++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-----------~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~~-~-~~~D~vi~--- 63 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-----------YLIGVSRQQSTCEKA--VERQLVDEAGQDLSL-L-QTAKIIFL--- 63 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-----------EEEEECSCHHHHHHH--HHTTSCSEEESCGGG-G-TTCSEEEE---
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-----------EEEEEECCHHHHHHH--HhCCCCccccCCHHH-h-CCCCEEEE---
Confidence 688999653 23567777775 566666542100000 01122 25678888 5 66776555
Q ss_pred cCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHH
Q psy16953 279 ASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNL 317 (806)
Q Consensus 279 ~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~ 317 (806)
++|...+.++++++.. ..-..+|+-.++.+....+++.+
T Consensus 64 av~~~~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~ 103 (279)
T 2f1k_A 64 CTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQ 103 (279)
T ss_dssp CSCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHH
Confidence 6677788888887742 12234555556776544444433
No 306
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=35.81 E-value=40 Score=34.62 Aligned_cols=81 Identities=7% Similarity=0.030 Sum_probs=45.2
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhcc-CCCeeEEEe
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSK-NKDADVLVN 277 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~-~~Dlavivi 277 (806)
.+|+|.|.++-. ++.|++.|+ .|+-+..+ .+..+.-..++.+++.+ .+|..+ .
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g~-----------~v~~~~r~---------~~~D~~d~~~~~~~~~~~~~d~vi--h 61 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRGD-----------VELVLRTR---------DELNLLDSRAVHDFFASERIDQVY--L 61 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTT-----------EEEECCCT---------TTCCTTCHHHHHHHHHHHCCSEEE--E
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-----------eEEEEecC---------ccCCccCHHHHHHHHHhcCCCEEE--E
Confidence 579999998765 566777776 34444322 11224444566664432 455433 3
Q ss_pred ecCChh------------------hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 278 FASLRS------------------AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 278 ~~~~~~------------------~~~~~le~~~~~gvk~~viis~ 305 (806)
++.... ....++++|.+.+++.+|.+|+
T Consensus 62 ~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 62 AAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp CCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 333211 1235667777777877777775
No 307
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=35.76 E-value=3.7e+02 Score=28.00 Aligned_cols=203 Identities=11% Similarity=-0.014 Sum_probs=100.1
Q ss_pred CCeeEEEEEe---ccccch-hhhhhhhhHHHHHHHHhhhhh----ccc--CceEEEEEcCCCHHHHHHHHHHhcccCCcc
Q psy16953 89 GKDQVVLITG---GGIANF-TNVAATFKGIVTALTEFQSKL----IEH--KISIFVRRAGPNYQEGLRIIREVGKTLGIP 158 (806)
Q Consensus 89 g~~i~~~~i~---GGI~~~-~~vA~~~~gii~al~~~~~~~----~~~--~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~ 158 (806)
..+||+-.++ |..+.. ..+ .+|+-.|+++.-+.. ... ++.++++-.+.+.+++.+..+++-.+.++.
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~---~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~ 78 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGY---SLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVI 78 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHH---HHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCS
T ss_pred CccEEEEEEEcCCCchhhhhHHH---HHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcE
Confidence 3456666665 322222 122 247777877743332 334 778888888999999988888876455676
Q ss_pred EEEeCCcchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChh-----HHHhhhh-cccccccCCCcc
Q psy16953 159 LFVFGPETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTR-----AVQSMLD-FDFVCRRSEPSV 232 (806)
Q Consensus 159 i~~~~~~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r-----~~~~ll~-~gf~~~~~~~~~ 232 (806)
..+- ..+..+.++...++...+|--.+.. +..+. ....+.-...+.. .++.|++ +|.
T Consensus 79 ~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~--~~~~~-----~~~~~f~~~~~~~~~~~~~~~~l~~~~g~--------- 141 (391)
T 3eaf_A 79 AIIG-WGTADTEKLSDQVDTDKITYISASY--SAKLL-----VKPFNFYPAPDYSTQACSGLAFLASEFGQ--------- 141 (391)
T ss_dssp EEEE-CCHHHHHHHHHHHHHHTCEEEESCC--CGGGT-----TSTTEECSSCCHHHHHHHHHHHHHHHHCS---------
T ss_pred EEEE-cCcHHHHHHHHHHhhcCCeEEeccc--chhhc-----CCCcEEEeCCCHHHHHHHHHHHHHHhcCC---------
Confidence 5544 5455555554444433333222111 11110 0111111222221 2445555 363
Q ss_pred cceeEeecC-CCcccccccceeecccccccHHHHhccCCCeeEE--EeecCChhhHHHHHHH--hcCCCCCEEEEEcCCC
Q psy16953 233 AAMVYPFTG-DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVL--VNFASLRSAYDSTIET--LGFPQIRSIAIIAEGI 307 (806)
Q Consensus 233 ~g~iypvnp-~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavi--vi~~~~~~~~~~~le~--~~~~gvk~~viis~Gf 307 (806)
-+|.-+.. +. ..+......+.+++.+. .+.++ ..+-.........+.. +.+.+...+++...
T Consensus 142 -~~iaii~~~~~---------~~g~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~-- 208 (391)
T 3eaf_A 142 -GKLALAYDSKV---------AYSRSPIGAIKKAAPSL-GLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNT-- 208 (391)
T ss_dssp -EEEEEEECTTC---------HHHHTTHHHHHHHTGGG-TEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSC--
T ss_pred -CEEEEEEecCC---------hhHHHHHHHHHHHHHHc-CCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecC--
Confidence 24444443 31 11233344444444442 23332 1122223345667777 77678886655433
Q ss_pred CHHHHHHHHHHHHHcCCe
Q psy16953 308 PENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 308 ~E~~~~~l~~~a~~~gir 325 (806)
. .....+.+.+++.|++
T Consensus 209 ~-~~~~~~~~~~~~~g~~ 225 (391)
T 3eaf_A 209 I-SSCSLLGRAMAKVGLD 225 (391)
T ss_dssp H-HHHHHHHHHHHHHTCC
T ss_pred c-HHHHHHHHHHHHCCCC
Confidence 2 2445566677777753
No 308
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=35.67 E-value=53 Score=34.31 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCC---------------------------cch-HHHHHHHHhcCCCCCEEEEEeCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGG---------------------------VEE-YEVCAALKDKRITKPLVAWCIGTC 454 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg---------------------------~~d-~~f~~a~r~~~~~KPVV~lk~Grs 454 (806)
+.+.++.+.+||++|+|++-++-+. ... .+++..+++ ..||||+..-|.+
T Consensus 40 L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~kPvIAaV~G~a 117 (287)
T 3gkb_A 40 LRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRH--QPQVTIVKLAGKA 117 (287)
T ss_dssp HHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHH--CSSEEEEEECSEE
T ss_pred HHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHh--CCCCEEEEECCee
Confidence 4455666666777777777665111 111 223333433 7899999998887
Q ss_pred cC
Q psy16953 455 AS 456 (806)
Q Consensus 455 ~~ 456 (806)
-.
T Consensus 118 ~G 119 (287)
T 3gkb_A 118 RG 119 (287)
T ss_dssp ET
T ss_pred eh
Confidence 64
No 309
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=35.66 E-value=68 Score=35.70 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=36.4
Q ss_pred ccccccHHHHhccCCCeeEEEeecCCh----------hhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLR----------SAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKE 321 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~----------~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~ 321 (806)
+.+-.++++++. ..|+.++ +++.. +.+.++++.+....-..+||..+.++....+++.+...+
T Consensus 97 l~~ttd~~ea~~-~aDvVii--aVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~~l~~ 169 (432)
T 3pid_A 97 FRATTDKHDAYR-NADYVII--ATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKERLGI 169 (432)
T ss_dssp EEEESCHHHHHT-TCSEEEE--CCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHHHHTC
T ss_pred eEEEcCHHHHHh-CCCEEEE--eCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHHHHhh
Confidence 344566766443 4566554 44433 146666655542222457788888888777777665543
No 310
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=35.65 E-value=18 Score=41.93 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCccEEEEEEc-cC--Ccch-HHHHHHHHhcC-CCCCEEEEE
Q psy16953 403 FMDHILRYQADPEVKMIVLLGE-VG--GVEE-YEVCAALKDKR-ITKPLVAWC 450 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~E-ig--g~~d-~~f~~a~r~~~-~~KPVV~lk 450 (806)
+.+-|+++.+||++|.|++++. .| ++.. .++.+++++.+ .+||||++-
T Consensus 75 i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva~~ 127 (593)
T 3bf0_A 75 IVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVG 127 (593)
T ss_dssp HHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455667788999999999997 33 3444 66777777765 469999984
No 311
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.47 E-value=1.9e+02 Score=25.01 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=72.2
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCC--cchHHHHHHHH
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGG--VEEYEVCAALK 438 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg--~~d~~f~~a~r 438 (806)
-+|-+|.........+...+.+. |+. ++... +..+.++.+.+. ...+|++-+..++ ..-.++++.++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~--g~~-v~~~~-------~~~~a~~~l~~~-~~dlvi~D~~l~~~~~~g~~~~~~l~ 75 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPL--DVT-IQCFA-------SAESFMRQQISD-DAIGMIIEAHLEDKKDSGIELLETLV 75 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTS--SSE-EEEES-------SHHHHTTSCCCT-TEEEEEEETTGGGBTTHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHC--CcE-EEEeC-------CHHHHHHHHhcc-CCCEEEEeCcCCCCCccHHHHHHHHH
Confidence 36889999998888888877765 443 22332 234666666554 3667777665433 22278888888
Q ss_pred hcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 439 DKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
+.....|||++-. .... . ......++|+ .-+-+.++|...++.+...-
T Consensus 76 ~~~~~~~ii~~s~-~~~~-------------------~----~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 76 KRGFHLPTIVMAS-SSDI-------------------P----TAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp HTTCCCCEEEEES-SCCH-------------------H----HHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEc-CCCH-------------------H----HHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 8767789888732 2211 0 1112235564 33568899999888887655
No 312
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=35.23 E-value=2.1e+02 Score=24.48 Aligned_cols=116 Identities=11% Similarity=-0.024 Sum_probs=72.5
Q ss_pred CCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CcchHHHHHHHH
Q psy16953 360 PGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG-GVEEYEVCAALK 438 (806)
Q Consensus 360 ~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig-g~~d~~f~~a~r 438 (806)
.-+|-+|..+-.....+...+.+.| +.......+ ..+.++++.+.+ ..+|++-.+.. +....++++.++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g--~~v~~~~~~-------~~~a~~~~~~~~-~dlii~d~~~~~~~~g~~~~~~l~ 78 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLG--YDVLGVFDN-------GEEAVRCAPDLR-PDIALVDIMLCGALDGVETAARLA 78 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHT--CEEEEEESS-------HHHHHHHHHHHC-CSEEEEESSCCSSSCHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCC--CeeEEEECC-------HHHHHHHHHhCC-CCEEEEecCCCCCCCHHHHHHHHH
Confidence 3469999999999888888888764 432211222 346777776543 56777776643 333378888888
Q ss_pred hcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 439 DKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
+. ...|||++-. .... . ....+.++|+ ..+-+.++|...++.++..-
T Consensus 79 ~~-~~~~ii~ls~-~~~~-------------------~----~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 79 AG-CNLPIIFITS-SQDV-------------------E----TFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp HH-SCCCEEEEEC-CCCH-------------------H----HHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred hC-CCCCEEEEec-CCCH-------------------H----HHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 86 7789998842 1111 0 1122234554 33568889988888777644
No 313
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=34.93 E-value=44 Score=33.57 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=53.8
Q ss_pred ceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeec
Q psy16953 203 TKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279 (806)
Q Consensus 203 t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~ 279 (806)
.+|.|+|.+. ...++|.+.||.- ...|+-++++...-..+ .+..++..+.+..+++. ..|+.++ +
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~-------~~~V~~~~r~~~~~~~~-~~~~g~~~~~~~~e~~~-~aDvVil---a 70 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVS-------SNQIICSDLNTANLKNA-SEKYGLTTTTDNNEVAK-NADILIL---S 70 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSC-------GGGEEEECSCHHHHHHH-HHHHCCEECSCHHHHHH-HCSEEEE---C
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCC-------CCeEEEEeCCHHHHHHH-HHHhCCEEeCChHHHHH-hCCEEEE---E
Confidence 4789999763 3477888887510 22456566542100000 01235677888888544 4676655 5
Q ss_pred CChhhHHHHHHHhcCC-CCC-EEEEEcCCCCHH
Q psy16953 280 SLRSAYDSTIETLGFP-QIR-SIAIIAEGIPEN 310 (806)
Q Consensus 280 ~~~~~~~~~le~~~~~-gvk-~~viis~Gf~E~ 310 (806)
++...+.++++++... .-. .+|-+++|++.+
T Consensus 71 v~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~ 103 (247)
T 3gt0_A 71 IKPDLYASIINEIKEIIKNDAIIVTIAAGKSIE 103 (247)
T ss_dssp SCTTTHHHHC---CCSSCTTCEEEECSCCSCHH
T ss_pred eCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHH
Confidence 5778889998887631 112 334477899854
No 314
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=34.88 E-value=51 Score=34.41 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc-----------------ch-HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV-----------------EE-YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~-----------------~d-~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++ |- .. .++ .+..++. ...||||+..-|.+-.
T Consensus 58 L~~al~~~~~d~~vr~vVltg~--G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 132 (286)
T 3myb_A 58 LGEAFGTLAEDESVRAVVLAAS--GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATA 132 (286)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEC--SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEET
T ss_pred HHHHHHHHHhCCCeEEEEEECC--CCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehH
Confidence 4456666777777888777776 21 00 112 2222332 3789999999888774
No 315
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=34.87 E-value=2.3e+02 Score=24.64 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=74.4
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CcchHHHHHHHHhc
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVG-GVEEYEVCAALKDK 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eig-g~~d~~f~~a~r~~ 440 (806)
+|-+|...-.....+...+.+.| +.. .... +..+.++++.+.....+|++=++.. +....++++.+++.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g--~~v-~~~~-------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 7 KILIVEDSKFQAKTIANILNKYG--YTV-EIAL-------TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI 76 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT--CEE-EEES-------SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcC--CEE-EEec-------ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC
Confidence 68899999988888888888765 332 2222 3457888887655667888877642 23337888888875
Q ss_pred CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhh
Q psy16953 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L 510 (806)
...|||++-...... .....-..| .+.. +.-+-+.++|...++.++...
T Consensus 77 -~~~~ii~ls~~~~~~---~~~~~~~~g----~~~~-------------l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 77 -SELPVVFLTAHTEPA---VVEKIRSVT----AYGY-------------VMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp -CCCCEEEEESSSSCC---CCGGGGGSC----EEEE-------------EETTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEECCCCHH---HHHHHHhCC----CcEE-------------EeCCCCHHHHHHHHHHHHHHH
Confidence 678988885433332 111111111 1111 234568889998888887655
No 316
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=34.75 E-value=52 Score=33.59 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc-------------ch-----HHHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV-------------EE-----YEVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~-------------~d-----~~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++.++-..+ .+ +.+.+..++. ...||||+..-|.+-.
T Consensus 32 l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 104 (254)
T 3gow_A 32 LYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAG 104 (254)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcccCCCChHHHhhcchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 44566677778888888887761100 01 1122233333 4789999999888774
No 317
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=34.68 E-value=95 Score=33.37 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=32.4
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcC---CCCCEEEEEcCCCCHH
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF---PQIRSIAIIAEGIPEN 310 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~---~gvk~~viis~Gf~E~ 310 (806)
+.+..++.+++. ..|+.++ ++|...+.++++++.. .+ ..+|.++.|+...
T Consensus 87 i~~t~d~~ea~~-~aDvVil---aVp~~~~~~vl~~i~~~l~~~-~ivvs~~kGi~~~ 139 (356)
T 3k96_A 87 LKAYCDLKASLE-GVTDILI---VVPSFAFHEVITRMKPLIDAK-TRIAWGTKGLAKG 139 (356)
T ss_dssp EEEESCHHHHHT-TCCEEEE---CCCHHHHHHHHHHHGGGCCTT-CEEEECCCSCBTT
T ss_pred eEEECCHHHHHh-cCCEEEE---CCCHHHHHHHHHHHHHhcCCC-CEEEEEeCCCCcC
Confidence 345678887543 4576555 6688889999988752 22 2355567788653
No 318
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=34.35 E-value=65 Score=34.76 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=50.3
Q ss_pred ceEEEEccChhH----HHhhhhcc-cccccCCCcccceeEeecCC--Cccccc-----c-cceeecccccccHHHHhccC
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFD-FVCRRSEPSVAAMVYPFTGD--HKLKFY-----W-GHKEVLIPVYKKMEDAMSKN 269 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~g-f~~~~~~~~~~g~iypvnp~--~~~~~~-----~-g~~~i~~p~y~sv~daip~~ 269 (806)
.+|+|+|++|+. ++.|++.+ | |+..-+|..++.+ .++.+- | |...+.+.-. +.++ +. .
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~------~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~~~-~~-~ 80 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAY------ADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EAAV-LG-G 80 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHH------HTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CHHH-HT-T
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC------CCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CHHH-hc-C
Confidence 589999999876 55666666 3 1111255565432 111110 0 0001111111 2233 33 5
Q ss_pred CCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 270 KDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 270 ~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
.|+++. +.+.......++++ ++|++ +|.+|+-|.
T Consensus 81 ~DvVf~---alg~~~s~~~~~~~-~~G~~-vIDlSa~~R 114 (352)
T 2nqt_A 81 HDAVFL---ALPHGHSAVLAQQL-SPETL-IIDCGADFR 114 (352)
T ss_dssp CSEEEE---CCTTSCCHHHHHHS-CTTSE-EEECSSTTT
T ss_pred CCEEEE---CCCCcchHHHHHHH-hCCCE-EEEECCCcc
Confidence 676554 77877778888888 89975 777787775
No 319
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=34.04 E-value=40 Score=34.87 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEccC-----Cc----------ch-HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVG-----GV----------EE-YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eig-----g~----------~d-~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+|+++++|++-++-+ |. .+ ..+ .+..++. ...||||+..-|.+-.
T Consensus 44 L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 118 (272)
T 1hzd_A 44 LSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALG 118 (272)
T ss_dssp HHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEET
T ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEe
Confidence 445666777788888888887611 00 01 112 2222332 4789999998877664
No 320
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=33.82 E-value=1.5e+02 Score=25.65 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCEEEEeCChhHHHHHHHHHHh-cCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHH
Q psy16953 361 GSVAYVSRSGGMSNELNNIISK-ATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALK 438 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~-~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r 438 (806)
-+|-+|...-.....+...+.+ .|.- ++... +..+.++++.+.....+|++=+...+-.+ .++++.+|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~---v~~~~-------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYD---FIEVE-------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCE---EEEEC-------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCcc---EEEEC-------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 3588999998888888888877 5542 22222 23477777766355677777666331123 67888888
Q ss_pred h--cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 439 D--KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 439 ~--~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
+ .....|||++-. .... . ....+.++|+ .-+-+.++|...++.++.+-
T Consensus 75 ~~~~~~~~~ii~ls~-~~~~-------------------~----~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 75 NNSRTANTPVIIATK-SDNP-------------------G----YRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HSGGGTTCCEEEEES-CCCH-------------------H----HHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred hCcccCCCCEEEEeC-CCCH-------------------H----HHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 8 567889998842 2111 1 2222335564 23567888888887776543
No 321
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=33.74 E-value=44 Score=34.79 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcc---h------------HH----HHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVE---E------------YE----VCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~---d------------~~----f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-..+. | .. +.+.+++. ...||||+..-|.+-.
T Consensus 55 L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 128 (277)
T 4di1_A 55 IVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALG 128 (277)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeh
Confidence 456666777788888888777611110 0 11 12222332 3789999999888764
No 322
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=33.69 E-value=58 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 431 YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 431 ~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
.++++.+++ ..||||+..-|.+-.
T Consensus 89 ~~~~~~l~~--~~kPvIAav~G~a~G 112 (266)
T 3fdu_A 89 FVLLKSAAR--LSKPLIIAVKGVAIG 112 (266)
T ss_dssp HHHHHHHHH--CCSCEEEEECSEEET
T ss_pred HHHHHHHHh--CCCCEEEEECCEEeh
Confidence 344445544 789999999888774
No 323
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=33.62 E-value=29 Score=39.02 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=55.4
Q ss_pred CCceEEEEccChh--H-HHhhhhcccccccCCCcccceeEeecCCCccccccc-ceeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQTR--A-VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWG-HKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~r--~-~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g-~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
++.+|+|+|.+.. + ..||.|+|. +|.=.+.|-.... ..-.|- .++-|..++ +++||++. -|+.++
T Consensus 36 kgK~IaVIGyGsQG~AqAlNLRDSGv-------~V~Vglr~~s~~e-~~~S~~~A~~~Gf~v~-~~~eA~~~-ADvV~~- 104 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLNMRDSGL-------DISYALRKEAIAE-KRASWRKATENGFKVG-TYEELIPQ-ADLVIN- 104 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHHHHHTTC-------EEEEEECHHHHHT-TCHHHHHHHHTTCEEE-EHHHHGGG-CSEEEE-
T ss_pred cCCEEEEeCCChHhHHHHhHHHhcCC-------cEEEEeCCCCccc-ccchHHHHHHCCCEec-CHHHHHHh-CCEEEE-
Confidence 6678999997754 3 789999996 2222222221000 001111 122356666 58886555 476665
Q ss_pred eecCChhhHHHHHHHhc-CCCCCEEEEEcCCCC
Q psy16953 277 NFASLRSAYDSTIETLG-FPQIRSIAIIAEGIP 308 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~-~~gvk~~viis~Gf~ 308 (806)
..|...-.++.++.. ...-..++.+|-||.
T Consensus 105 --L~PD~~q~~vy~~I~p~lk~G~~L~faHGFn 135 (491)
T 3ulk_A 105 --LTPDKQHSDVVRTVQPLMKDGAALGYSHGFN 135 (491)
T ss_dssp --CSCGGGHHHHHHHHGGGSCTTCEEEESSCHH
T ss_pred --eCChhhHHHHHHHHHhhCCCCCEEEecCccc
Confidence 557666666777653 123347889999993
No 324
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=33.52 E-value=1.8e+02 Score=25.15 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=55.8
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-----CCCccEEEEEEccCCcchHHHHH
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-----DPEVKMIVLLGEVGGVEEYEVCA 435 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-----Dp~Tk~I~ly~Eigg~~d~~f~~ 435 (806)
-+|-+|..+-.....+...+.+.|..... .... +..+.++++.+ +....+|++-.+..+....++++
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~~~v-~~~~-------~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~ 79 (143)
T 2qvg_A 8 VDILYLEDDEVDIQSVERVFHKISSLIKI-EIAK-------SGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLK 79 (143)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHCTTCCE-EEES-------SHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCCceE-EEEC-------CHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHH
Confidence 46999999999998888888887653222 1221 24578888876 24567787776644433378888
Q ss_pred HHHhcC--CCCCEEEEE
Q psy16953 436 ALKDKR--ITKPLVAWC 450 (806)
Q Consensus 436 a~r~~~--~~KPVV~lk 450 (806)
.+++.. ...|||++-
T Consensus 80 ~l~~~~~~~~~~ii~ls 96 (143)
T 2qvg_A 80 ELRDDSSFTDIEVFVLT 96 (143)
T ss_dssp HHTTSGGGTTCEEEEEE
T ss_pred HHHcCccccCCcEEEEe
Confidence 888754 567888873
No 325
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Probab=33.21 E-value=18 Score=41.17 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=61.3
Q ss_pred ceEEEEccChh---HHHhhhhc------ccccccCCCcccceeEe-ecCCCc-ccccccceeecccc----cccHHHHhc
Q psy16953 203 TKAIVWGMQTR---AVQSMLDF------DFVCRRSEPSVAAMVYP-FTGDHK-LKFYWGHKEVLIPV----YKKMEDAMS 267 (806)
Q Consensus 203 t~v~V~G~~~r---~~~~ll~~------gf~~~~~~~~~~g~iyp-vnp~~~-~~~~~g~~~i~~p~----y~sv~daip 267 (806)
.+|.|+|.+.. ..++|++. |+ .|.- ...+.+ .+. ..+.|+.+ ..++.|+++
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~-----------~ViVg~r~~sks~e~---A~e~G~~v~d~ta~s~aEAa~ 120 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-----------VVKIGLRKGSKSFDE---ARAAGFTEESGTLGDIWETVS 120 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCC-----------EEEEEECTTCSCHHH---HHHTTCCTTTTCEEEHHHHHH
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCC-----------EEEEEeCCchhhHHH---HHHCCCEEecCCCCCHHHHHh
Confidence 68999997643 47899988 75 2322 221110 000 01234443 368888655
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHH-HHHHHHHcCCeEEccCccccc
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGF-PQIRSIAIIAEGIPENMTRK-LNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~-l~~~a~~~giriiGPN~~Gii 335 (806)
. -|+.++ ++|.....++++++.. ..-..+++++.||.-+..++ ....-....+-.+=||++|-.
T Consensus 121 ~-ADVVIL---aVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~ 186 (525)
T 3fr7_A 121 G-SDLVLL---LISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPS 186 (525)
T ss_dssp H-CSEEEE---CSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHH
T ss_pred c-CCEEEE---CCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchh
Confidence 4 466655 5565555666665531 12235789999996433221 111111123444568888765
No 326
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=33.19 E-value=54 Score=34.01 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcc---h--------------HHHH----HHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVE---E--------------YEVC----AALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~---d--------------~~f~----~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-..+. | .++. +..++. ...||||+..-|.+-.
T Consensus 60 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 135 (276)
T 3rrv_A 60 LARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVG 135 (276)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 456667777788888888877611110 0 1111 122222 3789999999888774
No 327
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=33.17 E-value=78 Score=33.67 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=28.3
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
+++|.+..+ +...+|++++ ++|...-....+++.++|.+ ++ ++...
T Consensus 67 ~~v~~d~~~-l~~~vDvV~~---aTp~~~h~~~a~~~l~aGk~-Vi-~sap~ 112 (334)
T 2czc_A 67 FEVAGTLND-LLEKVDIIVD---ATPGGIGAKNKPLYEKAGVK-AI-FQGGE 112 (334)
T ss_dssp CCCSCBHHH-HHTTCSEEEE---CCSTTHHHHHHHHHHHHTCE-EE-ECTTS
T ss_pred eEEcCcHHH-hccCCCEEEE---CCCccccHHHHHHHHHcCCc-eE-eeccc
Confidence 477889999 5566776665 66665534444555557854 44 55443
No 328
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=33.09 E-value=4.1e+02 Score=27.07 Aligned_cols=85 Identities=7% Similarity=-0.061 Sum_probs=49.9
Q ss_pred CCeeEEEEEeccccc----hhhhhhhhhHHHHHHHHhhhhh--cccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEe
Q psy16953 89 GKDQVVLITGGGIAN----FTNVAATFKGIVTALTEFQSKL--IEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVF 162 (806)
Q Consensus 89 g~~i~~~~i~GGI~~----~~~vA~~~~gii~al~~~~~~~--~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~ 162 (806)
+.++++-+++--.-. +..+. +|+-.|+++.-+.. ...++.++++-.+.+.++..+.++++-.+-++...+.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~---~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 78 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQ---EAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLG 78 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHH---HHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CccEEEEEEeccCCchhhcCHHHH---HHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEc
Confidence 456677666632212 23333 47777777743221 1456888999889999998888888764556765554
Q ss_pred CCcchHHHHHHHHh
Q psy16953 163 GPETHMTAIVGMAL 176 (806)
Q Consensus 163 ~~~~~m~~~~~~a~ 176 (806)
...+....++...+
T Consensus 79 ~~~s~~~~~~~~~~ 92 (358)
T 3hut_A 79 DFSSTVSMAAGSIY 92 (358)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 33334444443333
No 329
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=33.03 E-value=1.3e+02 Score=28.25 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=15.9
Q ss_pred ceEEEEccChhH----HHhhhhccc
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf 223 (806)
.+|+|.|.++.. ++.|++.|+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~ 28 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY 28 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 579999998765 567777776
No 330
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=32.94 E-value=3e+02 Score=27.96 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=49.2
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCc--ccccc-cceee--cccccccHHHHhccCCCee
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFYW-GHKEV--LIPVYKKMEDAMSKNKDAD 273 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~~-g~~~i--~~p~y~sv~daip~~~Dla 273 (806)
.+|+|.|.++-. ++.|++.|+ .|+-+..... .+..- +-..+ .+.-..++.+++.+ .+++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~-----------~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~d 69 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGL-----------SVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQ-ENIE 69 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHH-SCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-----------EEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhh-cCCC
Confidence 368999988764 667777776 3443322100 00000 01112 24455566665443 1355
Q ss_pred EEEeecCCh-----------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 274 VLVNFASLR-----------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 274 vivi~~~~~-----------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
++|.++... .....++++|.+.+++.+|.+|+
T Consensus 70 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 70 AVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 555554321 12235778888789998888887
No 331
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=32.82 E-value=26 Score=36.75 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 286 DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
+++++.|.+.|+++++|-+.|-=--+.++.+++|.++|+.++|=
T Consensus 234 ~dti~~~~~ag~~~ivi~~g~si~~~~~~~i~~a~~~gi~~~~~ 277 (283)
T 4ggi_A 234 VATIHRAARAGLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGV 277 (283)
T ss_dssp HHHHHHHHHTTCCEEEEETTBCEETTHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCeEEEEcCCCcEEeCHHHHHHHHHHcCCEEEEe
Confidence 56788888899999888666642123577889999999999974
No 332
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=32.80 E-value=4e+02 Score=26.87 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--ccc---CCccccccCCCCc----ccccccCC
Q psy16953 287 STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GLK---PGCFKIGNTGGMM----DNILHSKL 357 (806)
Q Consensus 287 ~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii~---p~~~~ig~~~g~~----~~~~~~~~ 357 (806)
..++.+...+|..+| . .........+.+.+++.++.++.|++.. +.. |..+++....... ..++- ..
T Consensus 60 ~~~~~l~~~~v~~ii--g-~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 135 (346)
T 1usg_A 60 AVANKIVNDGIKYVI--G-HLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYIL-ET 135 (346)
T ss_dssp HHHHHHHHTTCCEEE--C-CSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHH-HT
T ss_pred HHHHHHHhCCCCEEE--c-CCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHH-Hh
Confidence 445555446787654 2 2222334456677888899999987631 211 2212221000000 00000 11
Q ss_pred CCCCCEEEEeCChhHHHHH----HHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 358 YRPGSVAYVSRSGGMSNEL----NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l----~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
+...+|++|......+... ...+.+.|+-+......-. .+.++...+..+.+. +.++|++... -.+ ..
T Consensus 136 ~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~---~~~d~~~~~~~l~~~-~~d~i~~~~~---~~~a~~ 208 (346)
T 1usg_A 136 VKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITA---GEKDFSALIARLKKE-NIDFVYYGGY---YPEMGQ 208 (346)
T ss_dssp TCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCT---TCCCCHHHHHHHHHT-TCCEEEEESC---HHHHHH
T ss_pred cCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCC---CCcCHHHHHHHHHhc-CCCEEEEcCc---chHHHH
Confidence 2445899999876655443 3445566765543322211 134556667666542 3456666543 234 67
Q ss_pred HHHHHHhcCCCCCEE
Q psy16953 433 VCAALKDKRITKPLV 447 (806)
Q Consensus 433 f~~a~r~~~~~KPVV 447 (806)
+++++++...+.|++
T Consensus 209 ~~~~~~~~g~~~~~~ 223 (346)
T 1usg_A 209 MLRQARSVGLKTQFM 223 (346)
T ss_dssp HHHHHHHTTCCCEEE
T ss_pred HHHHHHHcCCCCeEE
Confidence 888888876677754
No 333
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=32.80 E-value=2.3e+02 Score=24.03 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=54.8
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCC-cchHHHHHHHHhc
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGG-VEEYEVCAALKDK 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg-~~d~~f~~a~r~~ 440 (806)
+|-+|.-.-.....+...+...| +. ++... +..+.++++.+.+...+|++-.+..+ ....++++.+++.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 7 TILLADDEAILLLDFESTLTDAG--FL-VTAVS-------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI 76 (132)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTT--CE-EEEES-------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHHHHHHcC--CE-EEEEC-------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc
Confidence 58899988888888888777654 43 22222 24578888877645678877766433 3337888888886
Q ss_pred CCCCCEEEEE
Q psy16953 441 RITKPLVAWC 450 (806)
Q Consensus 441 ~~~KPVV~lk 450 (806)
....|||++-
T Consensus 77 ~~~~~ii~~s 86 (132)
T 2rdm_A 77 DPNMPIVYIS 86 (132)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 6678999884
No 334
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.66 E-value=2.3e+02 Score=25.03 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=52.5
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|.-.......+...+.+. .|+.......+ ..+.++++.+.+ ..+|++-++.++....++++.+++..
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~-~~~~v~~~~~~-------~~~a~~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~~ 77 (153)
T 3cz5_A 7 RIMLVDDHPIVREGYRRLIERR-PGYAVVAEAAD-------AGEAYRLYRETT-PDIVVMDLTLPGPGGIEATRHIRQWD 77 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTS-TTEEEEEEESS-------HHHHHHHHHTTC-CSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHHHHhhC-CCcEEEEEeCC-------HHHHHHHHhcCC-CCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 5888888888877777766541 35443312222 347777776654 67777766644433378889888876
Q ss_pred CCCCEEEEE
Q psy16953 442 ITKPLVAWC 450 (806)
Q Consensus 442 ~~KPVV~lk 450 (806)
...|||++-
T Consensus 78 ~~~~ii~ls 86 (153)
T 3cz5_A 78 GAARILIFT 86 (153)
T ss_dssp TTCCEEEEE
T ss_pred CCCeEEEEE
Confidence 778998874
No 335
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=32.40 E-value=58 Score=34.17 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=60.0
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+.+..+|+ +|+-+++... ..-......++++++.+ .|+.++
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-----------~V~~~dr~~~-------~~~~~~~~~~l~ell~~-aDiV~l-- 179 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFGM-----------RVIAYTRSSV-------DQNVDVISESPADLFRQ-SDFVLI-- 179 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-----------EEEEECSSCC-------CTTCSEECSSHHHHHHH-CSEEEE--
T ss_pred ecchheeeccCchhHHHHHHHHhhCc-----------EEEEEecccc-------ccccccccCChHHHhhc-cCeEEE--
Confidence 456799999873 34678888887 7777777631 11124456689985443 566555
Q ss_pred ecCChhhH-----HHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEcc
Q psy16953 278 FASLRSAY-----DSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGP 329 (806)
Q Consensus 278 ~~~~~~~~-----~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGP 329 (806)
.+|..... ...++.+. + .+++|-++--+-.+++.|.+..++.++.-.|=
T Consensus 180 ~~P~t~~t~~li~~~~l~~mk-~--gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l 233 (290)
T 3gvx_A 180 AIPLTDKTRGMVNSRLLANAR-K--NLTIVNVARADVVSKPDMIGFLKERSDVWYLS 233 (290)
T ss_dssp CCCCCTTTTTCBSHHHHTTCC-T--TCEEEECSCGGGBCHHHHHHHHHHCTTCEEEE
T ss_pred EeeccccchhhhhHHHHhhhh-c--CceEEEeehhcccCCcchhhhhhhccceEEee
Confidence 45433333 23344443 2 33444444233346777777777776665443
No 336
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=31.86 E-value=2e+02 Score=29.51 Aligned_cols=145 Identities=11% Similarity=0.007 Sum_probs=78.2
Q ss_pred HHHHHhc-CCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc--cc--cCCccccccCCCC----cccccccCC
Q psy16953 287 STIETLG-FPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG--GL--KPGCFKIGNTGGM----MDNILHSKL 357 (806)
Q Consensus 287 ~~le~~~-~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G--ii--~p~~~~ig~~~g~----~~~~~~~~~ 357 (806)
..++.+. +.+|..++- .+.......+...+.+.++.++.|++.. +. +|..++++..... ...++- .
T Consensus 62 ~~~~~li~~~~v~~iiG---~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 136 (368)
T 4eyg_A 62 RLAQELIVNDKVNVIAG---FGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAA--K 136 (368)
T ss_dssp HHHHHHHHTSCCSEEEE---CSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHhcCCcEEEEC---CCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHH--H
Confidence 3344443 478876552 1223445567788888999999987522 22 2222222200000 000000 1
Q ss_pred CCCCCEEEEeCChhHHHHH----HHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 358 YRPGSVAYVSRSGGMSNEL----NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l----~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
...-+|++|......+... ...+.+.|+-+......-.. +.++...+.-+.+. ...+|+++.. +. + ..
T Consensus 137 ~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~---~~d~~~~~~~l~~~-~~d~v~~~~~--~~-~a~~ 209 (368)
T 4eyg_A 137 NGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA---NPDFAPFLQRMKDA-KPDAMFVFVP--AG-QGGN 209 (368)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS---SCCCHHHHHHHHHH-CCSEEEEECC--TT-CHHH
T ss_pred cCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC---CCcHHHHHHHHHhc-CCCEEEEecc--ch-HHHH
Confidence 2334799999877766543 34455666654433333222 34567777776552 2457777665 33 4 78
Q ss_pred HHHHHHhcCCC
Q psy16953 433 VCAALKDKRIT 443 (806)
Q Consensus 433 f~~a~r~~~~~ 443 (806)
|++++++....
T Consensus 210 ~~~~~~~~g~~ 220 (368)
T 4eyg_A 210 FMKQFAERGLD 220 (368)
T ss_dssp HHHHHHHTTGG
T ss_pred HHHHHHHcCCC
Confidence 99999887644
No 337
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=31.82 E-value=55 Score=33.61 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc--------c-----------------h-HHHHHHHHhc-CCCCCEEEEEeCcCc
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV--------E-----------------E-YEVCAALKDK-RITKPLVAWCIGTCA 455 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~--------~-----------------d-~~f~~a~r~~-~~~KPVV~lk~Grs~ 455 (806)
+.+.++.+.+||++|+|++-++ |- . . +.+.+..++. ...||||+..-|.+-
T Consensus 43 L~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 120 (267)
T 3oc7_A 43 LHQGLRDASSDPAVRVVVLAHT--GGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVR 120 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEC--SSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEE
T ss_pred HHHHHHHHhcCCCceEEEEECC--CCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeec
Confidence 3456666677777777777665 21 0 0 1122222332 378999999988876
Q ss_pred C
Q psy16953 456 S 456 (806)
Q Consensus 456 ~ 456 (806)
.
T Consensus 121 G 121 (267)
T 3oc7_A 121 A 121 (267)
T ss_dssp T
T ss_pred c
Confidence 4
No 338
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=31.42 E-value=49 Score=34.47 Aligned_cols=46 Identities=13% Similarity=0.377 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhcccCceEEEE-------------EcCCCHHHHHHHHHHhcccCCccEEE
Q psy16953 114 IVTALTEFQSKLIEHKISIFVR-------------RAGPNYQEGLRIIREVGKTLGIPLFV 161 (806)
Q Consensus 114 ii~al~~~~~~~~~~~~~ivvR-------------~~G~n~~eG~~~l~~~g~~~g~~i~~ 161 (806)
+.+.|++..+++. +++++.| ..|.+.++|+++|++..+++|+|+-.
T Consensus 22 ~A~~l~~~~~~~~--~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~t 80 (267)
T 2nwr_A 22 VGEEIKRLSEKFK--EVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT 80 (267)
T ss_dssp HHHHHHHHHHHCT--TEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHhhc--CccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEE
Confidence 5556666554443 5888888 34566899999999999999999753
No 339
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=31.40 E-value=1.5e+02 Score=30.40 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=16.7
Q ss_pred CCCceEEEEccChhH----HHhhhhccc
Q psy16953 200 QEQTKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 200 ~~~t~v~V~G~~~r~----~~~ll~~gf 223 (806)
+++.+|+|.|.++-. ++.|++.|+
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~ 39 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGY 39 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCC
Confidence 477899999998764 667777776
No 340
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=31.14 E-value=56 Score=33.82 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc------ch-------------HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV------EE-------------YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~------~d-------------~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-+.+ ++ ..| .+..++. ...||||+..-|.+-.
T Consensus 49 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 126 (279)
T 3g64_A 49 LRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAG 126 (279)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecc
Confidence 45677778888999999888871101 00 011 1222222 3789999999888774
No 341
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=30.98 E-value=2.5e+02 Score=23.95 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=53.8
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|..+-.....+...+.+. |+..+....+ ..+.++.+.......+|++=++..+..-.++++.+|+..
T Consensus 7 ~iLivdd~~~~~~~l~~~L~~~--g~~~v~~~~~-------~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~ 77 (129)
T 3h1g_A 7 KLLVVDDSSTMRRIIKNTLSRL--GYEDVLEAEH-------GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS 77 (129)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT--TCCCEEEESS-------HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST
T ss_pred EEEEEeCCHHHHHHHHHHHHHc--CCcEEEEeCC-------HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 5889999988888888888775 4443333332 347777776665566777766544443378899888743
Q ss_pred --CCCCEEEE
Q psy16953 442 --ITKPLVAW 449 (806)
Q Consensus 442 --~~KPVV~l 449 (806)
...|||++
T Consensus 78 ~~~~~pii~~ 87 (129)
T 3h1g_A 78 RFKEIPIIMI 87 (129)
T ss_dssp TCTTCCEEEE
T ss_pred CCCCCeEEEE
Confidence 46788887
No 342
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=30.89 E-value=58 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 98 ~~kPvIAav~G~a~G 112 (268)
T 3i47_A 98 SPKPTIAMVQGAAFG 112 (268)
T ss_dssp CSSCEEEEECSEEET
T ss_pred CCCCEEEEECCEEEh
Confidence 789999999888774
No 343
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=30.80 E-value=65 Score=33.67 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 122 ~~kPvIAaV~G~a~G 136 (289)
T 3t89_A 122 CPKPVVAMVAGYSIG 136 (289)
T ss_dssp CSSCEEEEECSEEET
T ss_pred CCCCEEEEECCEeeh
Confidence 789999999888774
No 344
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=30.49 E-value=66 Score=32.91 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc---------------ch--HHH----HHHHHhc-CCCCCEEEEEeCcCcCcCcc
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV---------------EE--YEV----CAALKDK-RITKPLVAWCIGTCASMFTS 460 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~---------------~d--~~f----~~a~r~~-~~~KPVV~lk~Grs~~~~g~ 460 (806)
+.+.++.+.+||++|+|++-++ |- .+ .++ .+.+++. ...||||+..-|.+-. |-
T Consensus 48 L~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G--G~ 123 (257)
T 1szo_A 48 LAYCFHDIACDRENKVVILTGT--GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN--AP 123 (257)
T ss_dssp HHHHHHHHHHCTTCCEEEEECB--TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS--ST
T ss_pred HHHHHHHHHhCCCceEEEEEcC--CCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchHH--HH
Confidence 4456666777888888888776 20 01 112 2223332 3789999999887763 54
Q ss_pred cccccc
Q psy16953 461 EVQFGH 466 (806)
Q Consensus 461 ~aa~sH 466 (806)
.-+...
T Consensus 124 ~Lalac 129 (257)
T 1szo_A 124 EIPVMS 129 (257)
T ss_dssp HHHHTS
T ss_pred HHHHHC
Confidence 444433
No 345
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=30.22 E-value=55 Score=37.01 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=60.5
Q ss_pred CCCCceEEEEccCh--hH-HHhhhhc-ccccccCCCcccceeEeecCCCcccc---cccceeeccccccc-----HHHHh
Q psy16953 199 GQEQTKAIVWGMQT--RA-VQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKLKF---YWGHKEVLIPVYKK-----MEDAM 266 (806)
Q Consensus 199 ~~~~t~v~V~G~~~--r~-~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~~~---~~g~~~i~~p~y~s-----v~dai 266 (806)
...+.+|+|||+++ +. +..+.+. +| ...+|.-+.+...... ..|.+.+...+-++ ++++|
T Consensus 10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv--------~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl 81 (480)
T 2ph5_A 10 ILFKNRFVILGFGCVGQALMPLIFEKFDI--------KPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTL 81 (480)
T ss_dssp BCCCSCEEEECCSHHHHHHHHHHHHHBCC--------CGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGC
T ss_pred ecCCCCEEEECcCHHHHHHHHHHHhCCCC--------ceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHh
Confidence 34567899999874 33 3344333 22 0345666665421111 01212222333222 44445
Q ss_pred ccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcC----CCCH------------HHHHHHHHHHHH-cCCeEEcc
Q psy16953 267 SKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAE----GIPE------------NMTRKLNLLAKE-KGVSIIGP 329 (806)
Q Consensus 267 p~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~----Gf~E------------~~~~~l~~~a~~-~giriiGP 329 (806)
.+ .|++ |+ +++.....+++++|.+.|+..+=. +. ++-. +.++++.+.+++ .|+.|+|.
T Consensus 82 ~~-~DvV--IN-~s~~~~~l~Im~acleaGv~YlDT-a~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~GtAilg~ 156 (480)
T 2ph5_A 82 EE-NDFL--ID-VSIGISSLALIILCNQKGALYINA-ATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITH 156 (480)
T ss_dssp CT-TCEE--EE-CCSSSCHHHHHHHHHHHTCEEEES-SCCCCCC----------CCCHHHHHHHHHTTTTTCCSCEECSC
T ss_pred cC-CCEE--EE-CCccccCHHHHHHHHHcCCCEEEC-CCCcccccccccccCcchhhhHHHHHHHHHHHHhcCCcEEecC
Confidence 54 4554 44 445557788999999999975432 21 1110 455667776644 56666554
No 346
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=30.08 E-value=1.6e+02 Score=30.87 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=30.1
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCC-C-CCEEEEEcCCCC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFP-Q-IRSIAIIAEGIP 308 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~-g-vk~~viis~Gf~ 308 (806)
+.+..++.+++ +..|+.++ ++|...+.++++++... . =..++.++.|+.
T Consensus 78 ~~~~~~~~~~~-~~aD~Vil---av~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 78 VVAVPDVVQAA-EDADILIF---VVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp EEEESSHHHHH-TTCSEEEE---CCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred eEEEcCHHHHH-cCCCEEEE---eCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 34456777744 44676555 56778889999887531 1 124555566875
No 347
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=29.85 E-value=72 Score=34.13 Aligned_cols=36 Identities=6% Similarity=0.012 Sum_probs=25.9
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
.+|+++. +.|.....+..+.+.++|++ +|.+|+-|.
T Consensus 68 ~~DvV~~---a~g~~~s~~~a~~~~~aG~k-vId~Sa~~r 103 (340)
T 2hjs_A 68 SVGLAFF---AAAAEVSRAHAERARAAGCS-VIDLSGALE 103 (340)
T ss_dssp GCSEEEE---CSCHHHHHHHHHHHHHTTCE-EEETTCTTT
T ss_pred CCCEEEE---cCCcHHHHHHHHHHHHCCCE-EEEeCCCCC
Confidence 4676555 77887777778888778998 666676664
No 348
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.81 E-value=2.5e+02 Score=23.73 Aligned_cols=78 Identities=8% Similarity=0.044 Sum_probs=54.2
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhc-
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDK- 440 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~- 440 (806)
+|-+|...-.....+...+.+.| + .+.... +..+.++++.+.+ ..+|++-++..+..-.++++.+++.
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g--~-~v~~~~-------~~~~a~~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLG--F-QADYVM-------SGTDALHAMSTRG-YDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT--E-EEEEES-------SHHHHHHHHHHSC-CSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred eEEEEcCCHHHHHHHHHHHHHcC--C-CEEEEC-------CHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 57888888888888888888764 4 233322 2457888876644 6788887764444447899999886
Q ss_pred -CCCCCEEEEE
Q psy16953 441 -RITKPLVAWC 450 (806)
Q Consensus 441 -~~~KPVV~lk 450 (806)
....|||++-
T Consensus 74 ~~~~~~ii~~s 84 (127)
T 3i42_A 74 MEKTSKFVAVS 84 (127)
T ss_dssp CSSCCEEEEEE
T ss_pred ccCCCCEEEEE
Confidence 4677888774
No 349
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=29.72 E-value=60 Score=33.32 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEccC------------Cc--------ch-HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVG------------GV--------EE-YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eig------------g~--------~d-~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-. .. .. ..+ .+..++. ...||||+..-|.+-.
T Consensus 38 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (263)
T 3l3s_A 38 LHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATA 117 (263)
T ss_dssp HHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEH
Confidence 456677777888888888866510 00 01 122 2223333 4789999999888764
No 350
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=29.59 E-value=94 Score=31.28 Aligned_cols=88 Identities=8% Similarity=0.086 Sum_probs=46.9
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--cccccccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y~sv~daip~~~Dlaviv 276 (806)
.+|+|.| ++-. ++.|++.|| .|+.+..+.. +.--+.+.+ .+.-..++.+++...+|..+-
T Consensus 4 ~~ilVtG-aG~iG~~l~~~L~~~g~-----------~V~~~~r~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih- 69 (286)
T 3gpi_A 4 SKILIAG-CGDLGLELARRLTAQGH-----------EVTGLRRSAQ-PMPAGVQTLIADVTRPDTLASIVHLRPEILVY- 69 (286)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTC-----------CEEEEECTTS-CCCTTCCEEECCTTCGGGCTTGGGGCCSEEEE-
T ss_pred CcEEEEC-CCHHHHHHHHHHHHCCC-----------EEEEEeCCcc-ccccCCceEEccCCChHHHHHhhcCCCCEEEE-
Confidence 4799999 4543 667778776 3444332210 000011112 244455666655444665433
Q ss_pred eecCCh------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 277 NFASLR------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 277 i~~~~~------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
++.+. .....++++|.+.+++.+|.+|+
T Consensus 70 -~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 70 -CVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp -CHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred -eCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 33221 12456778887778877777765
No 351
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=29.58 E-value=67 Score=33.53 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 122 ~~kPvIAav~G~a~G 136 (290)
T 3sll_A 122 MHQPVIAAINGAAIG 136 (290)
T ss_dssp CSSCEEEEECSEEET
T ss_pred CCCCEEEEECCeehH
Confidence 789999999888774
No 352
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.57 E-value=2.3e+02 Score=29.81 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=50.1
Q ss_pred cCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCc
Q psy16953 412 ADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491 (806)
Q Consensus 412 ~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi 491 (806)
+|++..+|++..- .-...+.+..+- ..+|+|++=|+-.... ..+....++.++.|+.
T Consensus 63 ~~~~~D~V~i~tp--~~~h~~~~~~al--~~gk~vl~EKP~~~~~-------------------~~~~~l~~~a~~~~~~ 119 (354)
T 3db2_A 63 AREDVEMVIITVP--NDKHAEVIEQCA--RSGKHIYVEKPISVSL-------------------DHAQRIDQVIKETGVK 119 (354)
T ss_dssp HCSSCCEEEECSC--TTSHHHHHHHHH--HTTCEEEEESSSCSSH-------------------HHHHHHHHHHHHHCCC
T ss_pred cCCCCCEEEEeCC--hHHHHHHHHHHH--HcCCEEEEccCCCCCH-------------------HHHHHHHHHHHHcCCe
Confidence 4788888887665 333344433332 3679999988622221 1234467788889987
Q ss_pred ccCChhhHHHHHHHHHHhhhhCCcc
Q psy16953 492 VPSSFDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 492 ~v~~~~EL~~~~~all~~L~~~g~i 516 (806)
..-.+..-++-.-..+++++++|.|
T Consensus 120 ~~v~~~~R~~p~~~~~k~~i~~g~i 144 (354)
T 3db2_A 120 FLCGHSSRRLGALRKMKEMIDTKEI 144 (354)
T ss_dssp EEEECGGGGSHHHHHHHHHHHTTTT
T ss_pred EEEeechhcCHHHHHHHHHHhcCCC
Confidence 7666655555555556666666655
No 353
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=29.51 E-value=1.3e+02 Score=29.94 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=51.1
Q ss_pred eEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecC
Q psy16953 204 KAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFAS 280 (806)
Q Consensus 204 ~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~ 280 (806)
+|.|+|.+. ...++|.+.|| .|+-.++...++..---.+.++. .+..+++ +..|+.++ +++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~-----------~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~-~~aDvvi~--~v~ 65 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGV-----------EVVTSLEGRSPSTIERARTVGVT--ETSEEDV-YSCPVVIS--AVT 65 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-----------EEEECCTTCCHHHHHHHHHHTCE--ECCHHHH-HTSSEEEE--CSC
T ss_pred eEEEEechHHHHHHHHHHHHCCC-----------eEEEeCCccCHHHHHHHHHCCCc--CCHHHHH-hcCCEEEE--ECC
Confidence 688999763 24678888886 45555552000000000001233 6677743 45666555 444
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHc
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEK 322 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~ 322 (806)
+...... ++.+... .+.++|-.++......+++.+...+.
T Consensus 66 ~~~~~~~-~~~~~~~-~~~~vi~~s~~~~~~~~~l~~~~~~~ 105 (264)
T 1i36_A 66 PGVALGA-ARRAGRH-VRGIYVDINNISPETVRMASSLIEKG 105 (264)
T ss_dssp GGGHHHH-HHHHHTT-CCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred CHHHHHH-HHHHHHh-cCcEEEEccCCCHHHHHHHHHHHhhC
Confidence 4444444 4555422 22255556677665556666665444
No 354
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=29.49 E-value=2.5e+02 Score=29.55 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=49.3
Q ss_pred CceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCccc--c-cccceee--cccccccHHHHhccCCCe
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLK--F-YWGHKEV--LIPVYKKMEDAMSKNKDA 272 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~--~-~~g~~~i--~~p~y~sv~daip~~~Dl 272 (806)
..+|+|.|.++-. ++.|++.|| .|+-+..+.... . .-+...+ .+.-..++.+++ +.+|.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~-----------~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~d~ 96 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH-----------YVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT-EGVDH 96 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHH-TTCSE
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-----------eEEEEECCCccchhhccCCceEEECCCCCHHHHHHHh-CCCCE
Confidence 4589999998764 667777776 344333221000 0 0011112 255556677754 45665
Q ss_pred eEEEeecCChh------------------hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 273 DVLVNFASLRS------------------AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 273 avivi~~~~~~------------------~~~~~le~~~~~gvk~~viis~ 305 (806)
. |.++.... ....++++|.+.+++.+|.+|+
T Consensus 97 V--ih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 97 V--FNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp E--EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred E--EECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 3 33443211 1235778888789988888876
No 355
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=29.48 E-value=2.8e+02 Score=29.71 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=16.7
Q ss_pred HHHHHhcCCCCCEEEEEcCCC
Q psy16953 287 STIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 287 ~~le~~~~~gvk~~viis~Gf 307 (806)
.++++|.+.|++.+|.+|+.-
T Consensus 147 ~l~~aa~~~gv~r~V~iSS~~ 167 (399)
T 3nzo_A 147 KTIQQSIDAGAKKYFCVSTDK 167 (399)
T ss_dssp HHHHHHHHTTCSEEEEECCSC
T ss_pred HHHHHHHHcCCCEEEEEeCCC
Confidence 478888888898888888754
No 356
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=29.23 E-value=1.1e+02 Score=33.25 Aligned_cols=90 Identities=7% Similarity=0.024 Sum_probs=47.7
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecC--CCcccccccceeecccccccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTG--DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp--~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
-+|+|+|++|.. ++-|.+.+| | ..++..+.. ..++++.|...++-+.-. +..+ + ..+|+++.
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~------p--~~el~~~as~~saG~~~~~~~~~~~~~~~-~~~~-~-~~~Dvvf~- 70 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTL------P--IDKIRYLASARSAGKSLKFKDQDITIEET-TETA-F-EGVDIALF- 70 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCC------C--EEEEEEEECTTTTTCEEEETTEEEEEEEC-CTTT-T-TTCSEEEE-
T ss_pred cEEEEECCCChHHHHHHHHHhcCCC------C--cEEEEEEEccccCCCcceecCCCceEeeC-CHHH-h-cCCCEEEE-
Confidence 479999998765 444445444 1 224444432 122222222122211000 0112 2 34666554
Q ss_pred eecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 277 NFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 277 i~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
+.|...-.+..+.+.++|++ +|-.|+-|
T Consensus 71 --a~~~~~s~~~a~~~~~~G~~-vIDlSa~~ 98 (366)
T 3pwk_A 71 --SAGSSTSAKYAPYAVKAGVV-VVDNTSYF 98 (366)
T ss_dssp --CSCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred --CCChHhHHHHHHHHHHCCCE-EEEcCCcc
Confidence 88888878888887778986 66667655
No 357
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=29.20 E-value=70 Score=34.31 Aligned_cols=35 Identities=11% Similarity=-0.165 Sum_probs=23.5
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
.+|++++ ++|.....+..+.+.++|++ +|-.++-|
T Consensus 83 ~~DvV~~---atp~~~~~~~a~~~~~aG~~-VId~s~~~ 117 (354)
T 1ys4_A 83 DVDIVFS---ALPSDLAKKFEPEFAKEGKL-IFSNASAY 117 (354)
T ss_dssp TCCEEEE---CCCHHHHHHHHHHHHHTTCE-EEECCSTT
T ss_pred CCCEEEE---CCCchHHHHHHHHHHHCCCE-EEECCchh
Confidence 5676555 77887777788888778887 44334333
No 358
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=28.90 E-value=1.3e+02 Score=29.16 Aligned_cols=92 Identities=7% Similarity=0.027 Sum_probs=47.4
Q ss_pred CceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCc--ccccc-cceee--cccccccHHHHhccCCCe
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHK--LKFYW-GHKEV--LIPVYKKMEDAMSKNKDA 272 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~--~~~~~-g~~~i--~~p~y~sv~daip~~~Dl 272 (806)
..+++|.|.++.. ++.|++.|+ ...|+.+..+.. ++... +...+ .+.-..++.+++ +.+|+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~---------~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~ 87 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGL---------FSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF-QGHDV 87 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTC---------CSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG-SSCSE
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCC---------CCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHh-cCCCE
Confidence 3579999988654 667777775 113333322210 00000 00111 244445666643 34554
Q ss_pred eEEEeecCCh--------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 273 DVLVNFASLR--------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 273 avivi~~~~~--------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
+|+.+... .....++++|.+.+++.+|.+|+
T Consensus 88 --vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 88 --GFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp --EEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred --EEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 44444321 12345677777778888888887
No 359
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=28.84 E-value=86 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 104 ~~kPvIAav~G~a~G 118 (353)
T 4hdt_A 104 YPKPYVSIMDGIVMG 118 (353)
T ss_dssp CSSCEEEEECBEEET
T ss_pred CCCCEEEEeECceee
Confidence 789999999887764
No 360
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=28.55 E-value=65 Score=33.36 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 108 ~~kPvIAav~G~a~G 122 (275)
T 4eml_A 108 MPKVVIALVAGYAIG 122 (275)
T ss_dssp SSSEEEEEECSEEET
T ss_pred CCCCEEEEECCeeeh
Confidence 789999999888774
No 361
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=28.46 E-value=69 Score=34.30 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+..
T Consensus 166 ~~kPvIAaV~G~A~G 180 (334)
T 3t8b_A 166 MPKVVICLVNGWAAG 180 (334)
T ss_dssp SSSEEEEEECSEEET
T ss_pred CCCCEEEEECCcccc
Confidence 789999999888764
No 362
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=28.13 E-value=51 Score=33.88 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCC-c---ch-HHH-------------HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGG-V---EE-YEV-------------CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg-~---~d-~~f-------------~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++.++ |. + .| ..| .+..++. ...||||+..-|.+-.
T Consensus 42 l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 113 (263)
T 3moy_A 42 VLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALG 113 (263)
T ss_dssp HHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEET
T ss_pred HHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 4566677777888888888765 11 1 01 111 1112222 3789999999888764
No 363
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=28.02 E-value=3.9e+02 Score=25.29 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcC------------CCccEEEEEEccC
Q psy16953 359 RPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQAD------------PEVKMIVLLGEVG 426 (806)
Q Consensus 359 ~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~D------------p~Tk~I~ly~Eig 426 (806)
.+-+|-+|--.-.+...+...+.+. |+..+....+ ..+.++++.+. ....+|++=+...
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~--g~~~v~~a~~-------~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp 130 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKM--GVSEVEQCDS-------GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMP 130 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHT--TCSEEEEESS-------HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHc--CCCeeeeeCC-------HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCC
Confidence 3447999999999888888888876 4444444333 35778877763 3456888877654
Q ss_pred CcchHHHHHHHHhc----CCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC--cccCChhhHH
Q psy16953 427 GVEEYEVCAALKDK----RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA--HVPSSFDTLG 500 (806)
Q Consensus 427 g~~d~~f~~a~r~~----~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv--i~v~~~~EL~ 500 (806)
+..-.++++.+|+. ....|||++-+ ... +.. ....+.++|+ +....+++|.
T Consensus 131 ~~~G~el~~~lr~~~~~~~~~~piI~ls~-~~~------------------~~~----~~~~~~~~Ga~~~l~KP~~~L~ 187 (206)
T 3mm4_A 131 EMDGYEATREIRKVEKSYGVRTPIIAVSG-HDP------------------GSE----EARETIQAGMDAFLDKSLNQLA 187 (206)
T ss_dssp SSCHHHHHHHHHHHHHTTTCCCCEEEEES-SCC------------------CHH----HHHHHHHHTCSEEEETTCTTHH
T ss_pred CCCHHHHHHHHHhhhhhcCCCCcEEEEEC-CCC------------------cHH----HHHHHHhCCCCEEEcCcHHHHH
Confidence 54337888888874 36679888732 211 101 2223344555 4556666877
Q ss_pred HHHHHHHHh
Q psy16953 501 DIIGSVYKD 509 (806)
Q Consensus 501 ~~~~all~~ 509 (806)
..++.++..
T Consensus 188 ~~i~~~l~~ 196 (206)
T 3mm4_A 188 NVIREIESK 196 (206)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 777766543
No 364
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=27.75 E-value=1.2e+02 Score=32.61 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=48.5
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEeecC--CCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTG--DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp--~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
+|+|+|+++-. ++-|.++.| | ..++..+.. ..++++.|...++-+.-.. -.+ + ..+|+++.
T Consensus 3 ~VaIvGatG~vG~el~~lL~~h~f------p--~~el~~~~s~~~aG~~~~~~~~~~~~~~~~-~~~-~-~~~Dvvf~-- 69 (344)
T 3tz6_A 3 SIGIVGATGQVGQVMRTLLDERDF------P--ASAVRFFASARSQGRKLAFRGQEIEVEDAE-TAD-P-SGLDIALF-- 69 (344)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC------C--EEEEEEEECTTTSSCEEEETTEEEEEEETT-TSC-C-TTCSEEEE--
T ss_pred EEEEECCCChHHHHHHHHHHhCCC------C--ceEEEEEECcccCCCceeecCCceEEEeCC-HHH-h-ccCCEEEE--
Confidence 78999998764 444445444 2 235555543 2333444432222111001 012 2 34666554
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
+.|...-.+..+.+.++|++ +|-.|+-|
T Consensus 70 -a~~~~~s~~~a~~~~~~G~~-vID~Sa~~ 97 (344)
T 3tz6_A 70 -SAGSAMSKVQAPRFAAAGVT-VIDNSSAW 97 (344)
T ss_dssp -CSCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred -CCChHHHHHHHHHHHhCCCE-EEECCCcc
Confidence 88888878888887778885 55566655
No 365
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=27.73 E-value=1.2e+02 Score=31.61 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=48.9
Q ss_pred CceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCC--c-ccc-------cccceee-c-ccccccHHHH
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDH--K-LKF-------YWGHKEV-L-IPVYKKMEDA 265 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~--~-~~~-------~~g~~~i-~-~p~y~sv~da 265 (806)
..+|+|.|.+|.. ++.|++.|+ .|+-+..+. . .+. --|.+.+ + +.-..++.++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-----------~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~ 78 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-----------PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKI 78 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-----------CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-----------CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHH
Confidence 3579999998764 667777776 344443221 0 000 0011222 2 5556667775
Q ss_pred hcc-CCCeeEEEeecCC--hhhHHHHHHHhcCCC-CCEEEE
Q psy16953 266 MSK-NKDADVLVNFASL--RSAYDSTIETLGFPQ-IRSIAI 302 (806)
Q Consensus 266 ip~-~~Dlavivi~~~~--~~~~~~~le~~~~~g-vk~~vi 302 (806)
+.+ .+|..+. ++.. -.....++++|.+.| ++.++.
T Consensus 79 ~~~~~~d~Vi~--~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 79 LKEHEIDIVVS--TVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp HHHTTCCEEEE--CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred HhhCCCCEEEE--CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 542 5665443 3332 234567889998888 998764
No 366
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=27.57 E-value=69 Score=34.30 Aligned_cols=104 Identities=8% Similarity=-0.055 Sum_probs=56.7
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+.+..+|+ +|+-+++....+. ..+.+.. |.+++++ -...|+.++
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-----------~V~~~d~~~~~~~---~~~~g~~-~~~l~el-l~~aDvV~l-- 225 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGM-----------KTIGYDPIISPEV---SASFGVQ-QLPLEEI-WPLCDFITV-- 225 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-----------EEEEECSSSCHHH---HHHTTCE-ECCHHHH-GGGCSEEEE--
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCC-----------EEEEECCCcchhh---hhhcCce-eCCHHHH-HhcCCEEEE--
Confidence 456799999873 34677777776 6777777532110 0112332 4588884 444566555
Q ss_pred ecCChhhHH-----HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 278 FASLRSAYD-----STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 278 ~~~~~~~~~-----~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.+|...... +.++.+. -.+++|-++--+--+++.|.+..++..+.
T Consensus 226 ~~P~t~~t~~li~~~~l~~mk---~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 226 HTPLLPSTTGLLNDNTFAQCK---KGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp CCCCCTTTTTSBCHHHHTTSC---TTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred ecCCCHHHHHhhCHHHHhhCC---CCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 554433332 3444443 23455544433334567777777775543
No 367
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=27.43 E-value=5.3e+02 Score=26.64 Aligned_cols=208 Identities=10% Similarity=0.069 Sum_probs=101.1
Q ss_pred CCeeEEEEEec--cccchhhhhhhhhHHHHHHHHhhhhh--cc-cCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeC
Q psy16953 89 GKDQVVLITGG--GIANFTNVAATFKGIVTALTEFQSKL--IE-HKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFG 163 (806)
Q Consensus 89 g~~i~~~~i~G--GI~~~~~vA~~~~gii~al~~~~~~~--~~-~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~ 163 (806)
+.+|||-.++- |...+-. ...+|+-.|+++.-+.. .. .++.++++-.+.+.+++.+..+++-..-++.. +++
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~--~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~a-iiG 79 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTL--PYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHA-LAG 79 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHH--HHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSE-EEE
T ss_pred CCCEEEEEeecCCCchhhhH--HHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEE-EEC
Confidence 45667766652 3221111 11257777877743221 13 57889999999999998888887754446765 444
Q ss_pred C-cchHHHHHHHHhcCCCCCCCCCCCCCcccccCCCCCCCceEEEEccChh-----HHHhhhhcccccccCCCcccceeE
Q psy16953 164 P-ETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQEQTKAIVWGMQTR-----AVQSMLDFDFVCRRSEPSVAAMVY 237 (806)
Q Consensus 164 ~-~~~m~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~V~G~~~r-----~~~~ll~~gf~~~~~~~~~~g~iy 237 (806)
+ .+..+.++...++...+|--.+... .+.+.. -....-+.-++.+.. .++.|.+.|. -+|.
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~-~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~----------~~va 146 (387)
T 3i45_A 80 TFLSHVGLAVSDFARQRKVLFMASEPL--TDALTW-EKGNRYTYRLRPSTYMQAAMLAAEAAKLPI----------TRWA 146 (387)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEECSCC--CGGGTT-TTCCTTEEECSCCHHHHHHHHHHHHTTSSC----------CEEE
T ss_pred CcchHHHHHHHHHHHHcCceEEecCCC--chhhhh-ccCCCCEEEeCCChHHHHHHHHHHHHHcCC----------CeEE
Confidence 4 3444445544444333332222111 000100 001112222333322 2455555553 2555
Q ss_pred eecCCCcccccccceeecccccccHHHHhccC-CCeeEEEe-ecC-ChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHH
Q psy16953 238 PFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKN-KDADVLVN-FAS-LRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRK 314 (806)
Q Consensus 238 pvnp~~~~~~~~g~~~i~~p~y~sv~daip~~-~Dlavivi-~~~-~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~ 314 (806)
-+.++. ..+......+.+++.+. +++.++.. ..+ ........++++.+.+...+++.+.+ + ....
T Consensus 147 ii~~~~---------~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~--~-~~~~ 214 (387)
T 3i45_A 147 TIAPNY---------EYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFG--A-DLPK 214 (387)
T ss_dssp EECCSS---------HHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCT--T-HHHH
T ss_pred EEeCCc---------hHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCcc--H-HHHH
Confidence 555542 11233333444434332 23333211 122 23456677777776788866654443 2 3445
Q ss_pred HHHHHHHcCC
Q psy16953 315 LNLLAKEKGV 324 (806)
Q Consensus 315 l~~~a~~~gi 324 (806)
+++.+++.|+
T Consensus 215 ~~~~~~~~g~ 224 (387)
T 3i45_A 215 FVREGRVRGL 224 (387)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHcCC
Confidence 6666777665
No 368
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=27.23 E-value=70 Score=32.42 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.2
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 92 ~~~kPvIAav~G~a~G 107 (250)
T 2a7k_A 92 NVNKPTIAAVDGYAIG 107 (250)
T ss_dssp TCCSCEEEEECSEEET
T ss_pred cCCCCEEEEECCeEeH
Confidence 4789999999887764
No 369
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=27.18 E-value=77 Score=32.88 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeE---------------EccCccccccCC--ccccccCCCCcc
Q psy16953 288 TIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSI---------------IGPATVGGLKPG--CFKIGNTGGMMD 350 (806)
Q Consensus 288 ~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giri---------------iGPN~~Gii~p~--~~~ig~~~g~~~ 350 (806)
+.|+.. .|..++.+|++-.++...++|.++|++.|+.+ +|+..+|+-|-. .+.+ .+..
T Consensus 119 I~eAr~-~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf~v----dl~~ 193 (258)
T 4a29_A 119 IDDAYN-LGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETGEI----NKEN 193 (258)
T ss_dssp HHHHHH-HTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTCCB----CHHH
T ss_pred HHHHHH-cCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCcccccc----CHHH
Confidence 334333 78888888888888877778888888877754 377777776543 1110 0000
Q ss_pred cccccCCCCCCCEEEEeCChhHHHHHHHHHHhcC
Q psy16953 351 NILHSKLYRPGSVAYVSRSGGMSNELNNIISKAT 384 (806)
Q Consensus 351 ~~~~~~~~~~G~ValvSQSG~l~~~l~~~~~~~g 384 (806)
+ ......-|..+-+||-||--+.+=+..+.+.|
T Consensus 194 t-~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G 226 (258)
T 4a29_A 194 Q-RKLISMIPSNVVKVAKLGISERNEIEELRKLG 226 (258)
T ss_dssp H-HHHHTTSCTTSEEEEEESSCCHHHHHHHHHTT
T ss_pred H-HHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCC
Confidence 0 00011345667889999988888777777655
No 370
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=27.12 E-value=78 Score=32.55 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.6
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 106 ~~kPvIAav~G~a~G 120 (275)
T 1dci_A 106 CPKPVIAAIHGGCIG 120 (275)
T ss_dssp SSSCEEEEECSEEET
T ss_pred CCCCEEEEECCeeeH
Confidence 789999998887764
No 371
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=26.93 E-value=4.6e+02 Score=25.97 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=53.4
Q ss_pred CCCEEEEeC-ChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHH
Q psy16953 360 PGSVAYVSR-SGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAAL 437 (806)
Q Consensus 360 ~G~ValvSQ-SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~ 437 (806)
.|++++|+- ||++|.++...+.++|. +++-++.. .-...+..+.+.+....++..+...+....+ .++++.+
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA---NVAVAGRS---TADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESC---HHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCC---HHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 477888875 78999999999998875 44555544 2234455556655554577766666323333 4444443
Q ss_pred HhcCCCCCEEEEEeCcCc
Q psy16953 438 KDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 438 r~~~~~KPVV~lk~Grs~ 455 (806)
.+.--+.=+++..+|...
T Consensus 83 ~~~~g~id~lvnnAg~~~ 100 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFP 100 (262)
T ss_dssp HHHHSCCSEEEECCCCCC
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 332124456776666543
No 372
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=26.93 E-value=71 Score=33.30 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEcc-----CC-c--------ch--HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEV-----GG-V--------EE--YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Ei-----gg-~--------~d--~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++- |+ + .+ ..+ .+..++. ...||||+..-|.+-.
T Consensus 65 L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 139 (287)
T 2vx2_A 65 LQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATA 139 (287)
T ss_dssp HHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEc
Confidence 44566677788888888888761 00 0 01 112 2223332 4789999998887764
No 373
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=26.88 E-value=58 Score=33.85 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=27.9
Q ss_pred cccc--cHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEE-EEcCCC
Q psy16953 257 PVYK--KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIA-IIAEGI 307 (806)
Q Consensus 257 p~y~--sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~v-iis~Gf 307 (806)
.+.. ++.++ -+..|+.++ +++...+.++++.+....-..+| .++.|+
T Consensus 58 ~~~~~~~~~~~-~~~~D~vi~---~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 58 EIFWPEQLEKC-LENAEVVLL---GVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp EEECGGGHHHH-HTTCSEEEE---CSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred EEecHHhHHHH-HhcCCEEEE---cCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 3445 77774 345676555 66777889999887631112344 444588
No 374
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=26.81 E-value=19 Score=37.00 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHH
Q psy16953 37 TSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISER 87 (806)
Q Consensus 37 ~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~ 87 (806)
.+.+++.+....++ ++||||..--+++ |..++..+.++++++++..
T Consensus 142 ~~~~~~~~~~~~~~--p~vvKP~~g~~g~---Gv~~v~~~~~~l~~~~~~~ 187 (316)
T 1gsa_A 142 RNKAQLKAFWEKHS--DIILKPLDGMGGA---SIFRVKEGDPNLGVIAETL 187 (316)
T ss_dssp SCHHHHHHHHHHHS--SEEEECSSCCTTT---TCEEECTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHcC--CEEEEECCCCCcc---cEEEecCChHHHHHHHHHH
Confidence 46677665444444 8999998855444 4556654667777777654
No 375
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=26.74 E-value=77 Score=34.02 Aligned_cols=36 Identities=17% Similarity=-0.083 Sum_probs=25.2
Q ss_pred cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 268 KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 268 ~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
..+|++++ +.|...-.+..+++.++|++ +|-.++-|
T Consensus 76 ~~vDvVf~---atp~~~s~~~a~~~~~aG~~-VId~s~~~ 111 (350)
T 2ep5_A 76 KDVDVVLS---ALPNELAESIELELVKNGKI-VVSNASPF 111 (350)
T ss_dssp TTCSEEEE---CCCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred cCCCEEEE---CCChHHHHHHHHHHHHCCCE-EEECCccc
Confidence 45676554 77877777788888778988 55556555
No 376
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=26.58 E-value=1.1e+02 Score=27.73 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=59.8
Q ss_pred ceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCCh
Q psy16953 203 TKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLR 282 (806)
Q Consensus 203 t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~ 282 (806)
.|++|+|= ...+-.++-.|+ .+|+|+.. ++ +...+.+ +-+. |+++|++.=.-+
T Consensus 3 mKiaVIGD-~Dtv~GFrLaGi-----------e~~~v~~~---------ee----~~~~~~~-l~~~-digIIlIte~ia 55 (115)
T 3aon_B 3 YKIGVVGD-KDSVSPFRLFGF-----------DVQHGTTK---------TE----IRKTIDE-MAKN-EYGVIYITEQCA 55 (115)
T ss_dssp EEEEEESC-HHHHGGGGGGTC-----------EEECCCSH---------HH----HHHHHHH-HHHT-TEEEEEEEHHHH
T ss_pred eEEEEEEC-HHHHHHHHHcCC-----------eEEEeCCH---------HH----HHHHHHH-HHhc-CceEEEEeHHHH
Confidence 37889997 445666666774 56888643 11 2233444 2334 899996655456
Q ss_pred hhHHHHHHHhcCCCCCEEEEEcCCCCH--HHHHHHHHHHHH-cCCeE-EccC
Q psy16953 283 SAYDSTIETLGFPQIRSIAIIAEGIPE--NMTRKLNLLAKE-KGVSI-IGPA 330 (806)
Q Consensus 283 ~~~~~~le~~~~~gvk~~viis~Gf~E--~~~~~l~~~a~~-~giri-iGPN 330 (806)
..++..++.+.+...+.++.|.+.... .....+.+.+++ -|+.+ .||.
T Consensus 56 ~~i~~~i~~~~~~~~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~~~ 107 (115)
T 3aon_B 56 NLVPETIERYKGQLTPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNILSGPS 107 (115)
T ss_dssp TTCHHHHHHHHTSSSCEEEEECBTTBCCSHHHHHHHHHHHHHTTCC------
T ss_pred HHhHHHHHHHhCCCCCEEEEECCCCCCCCccHHHHHHHHHHHhCcceEecCC
Confidence 667788888876668999988875433 144555555554 34432 4554
No 377
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.25 E-value=64 Score=32.98 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=22.7
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCC-C-CCEEEEEcCCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFP-Q-IRSIAIIAEGIP 308 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~-g-vk~~viis~Gf~ 308 (806)
..|+.++ +++...+.++++.+... + =..++.++.|+.
T Consensus 74 ~~d~vi~---~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~ 112 (316)
T 2ew2_A 74 QVDLIIA---LTKAQQLDAMFKAIQPMITEKTYVLCLLNGLG 112 (316)
T ss_dssp CCSEEEE---CSCHHHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred CCCEEEE---EeccccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 4565554 55677888888887521 1 124555567886
No 378
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=26.24 E-value=34 Score=37.10 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=25.2
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
.+|+++. +.|.....+..+.+.++|++ +|.+|+-|
T Consensus 79 ~vDvvf~---a~p~~~s~~~a~~~~~~G~~-vIDlSa~~ 113 (359)
T 4dpl_A 79 DVDIIFS---PLPQGAAGPVEEQFAKEGFP-VISNSPDH 113 (359)
T ss_dssp TCCEEEE---CCCTTTHHHHHHHHHHTTCE-EEECSSTT
T ss_pred CCCEEEE---CCChHHHHHHHHHHHHCCCE-EEEcCCCc
Confidence 4566544 78888877788887778986 66667655
No 379
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=26.24 E-value=34 Score=37.10 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=25.2
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
.+|+++. +.|.....+..+.+.++|++ +|.+|+-|
T Consensus 79 ~vDvvf~---a~p~~~s~~~a~~~~~~G~~-vIDlSa~~ 113 (359)
T 4dpk_A 79 DVDIIFS---PLPQGAAGPVEEQFAKEGFP-VISNSPDH 113 (359)
T ss_dssp TCCEEEE---CCCTTTHHHHHHHHHHTTCE-EEECSSTT
T ss_pred CCCEEEE---CCChHHHHHHHHHHHHCCCE-EEEcCCCc
Confidence 4566544 78888877788887778986 66667655
No 380
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=26.15 E-value=3.8e+02 Score=26.96 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCceEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCc------ccccccceeecccccccHHHHhcc-CC
Q psy16953 201 EQTKAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHK------LKFYWGHKEVLIPVYKKMEDAMSK-NK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~------~~~~~g~~~i~~p~y~sv~daip~-~~ 270 (806)
++++|+|+|+++- .+++|...| .|.|.-+.++.- .-+++..+.+|.+--..+.+.+.+ .|
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~G----------vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 96 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAG----------VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNP 96 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTT----------CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcC----------CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCC
Confidence 5679999998753 488999998 578888865420 011222333442222222221222 35
Q ss_pred CeeEEEeec-CChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc
Q psy16953 271 DADVLVNFA-SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG 333 (806)
Q Consensus 271 Dlavivi~~-~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G 333 (806)
++.+..+.. ...+...+.++.+ . +||-+..-. +....|.++|+++++.++=-.+.|
T Consensus 97 ~~~v~~~~~~~~~~~~~~~~~~~-----D-vVi~~~d~~-~~r~~l~~~~~~~~~p~i~~~~~g 153 (251)
T 1zud_1 97 DIQLTALQQRLTGEALKDAVARA-----D-VVLDCTDNM-ATRQEINAACVALNTPLITASAVG 153 (251)
T ss_dssp TSEEEEECSCCCHHHHHHHHHHC-----S-EEEECCSSH-HHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred CCEEEEEeccCCHHHHHHHHhcC-----C-EEEECCCCH-HHHHHHHHHHHHhCCCEEEEeccc
Confidence 555542111 1122334444433 3 455454432 345567888889888776544443
No 381
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.14 E-value=1.9e+02 Score=29.62 Aligned_cols=114 Identities=9% Similarity=0.081 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCCCCCCCEEEEeCC--------hhHHHHH
Q psy16953 305 EGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRS--------GGMSNEL 376 (806)
Q Consensus 305 ~Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQS--------G~l~~~l 376 (806)
.+++++..+++.+++++.|-+ ||...- .+ ..-+.+.||++..+ ..+...+
T Consensus 28 ~~vs~~tr~rV~~~a~~lgY~---pn~~a~------------~l-------~~~~~~~Igvi~~~~~~~~~~~~~~~~gi 85 (338)
T 3dbi_A 28 GYVSQETKDRVFQAVEESGYR---PNLLAR------------NL-------SAKSTQTLGLVVTNTLYHGIYFSELLFHA 85 (338)
T ss_dssp ------------------------------------------------------CCSEEEEEECTTTTSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---cCHHHH------------Hh-------hhCCCCEEEEEecCCcccChhHHHHHHHH
Confidence 467778888999999987754 553210 00 01133557777554 2334444
Q ss_pred HHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEE
Q psy16953 377 NNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 377 ~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~l 449 (806)
.+.+.+.|. ...+...+. ..-...++++.+.+ ..+..|++..- ...+..+.+.+++ .+.|||++
T Consensus 86 ~~~a~~~g~--~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~~~--~~~~~~~~~~~~~--~~iPvV~~ 149 (338)
T 3dbi_A 86 ARMAEEKGR--QLLLADGKH--SAEEERQAIQYLLD-LRCDAIMIYPR--FLSVDEIDDIIDA--HSQPIMVL 149 (338)
T ss_dssp HHHHHHTTC--EEEEEECTT--SHHHHHHHHHHHHH-TTCSEEEECCS--SSCHHHHHHHHHH--CSSCEEEE
T ss_pred HHHHHHCCC--EEEEEeCCC--ChHHHHHHHHHHHh-CCCCEEEEeCC--CCChHHHHHHHHc--CCCCEEEE
Confidence 555566554 444444333 12233456666655 46788877543 3333555555554 56899886
No 382
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=26.02 E-value=2.2e+02 Score=26.92 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=15.7
Q ss_pred eEEEEccChhH----HHhhhhccc
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf 223 (806)
+|+|.|.++.. ++.|++.|+
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~ 25 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH 25 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC
Confidence 68999988764 677778776
No 383
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=26.01 E-value=1.9e+02 Score=29.24 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--cccccccHHHHhcc-CCC
Q psy16953 199 GQEQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSK-NKD 271 (806)
Q Consensus 199 ~~~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y~sv~daip~-~~D 271 (806)
+.+..+|+|.|.++-. ++.|++.|+ .|+-+..+...+. .+...+ .+.-..++.+++.+ .+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-----------~V~~~~r~~~~~~-l~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-----------EVFGTSRNNEAKL-PNVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEESCTTCCC-TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-----------EEEEEecCCcccc-ceeeEEECCCCCHHHHHHHHHhcCCC
Confidence 4477789999998764 667777776 3444432211000 011111 24455666665543 366
Q ss_pred eeEEEeecCChh-----------------hHHHHHHHhcCC-CCCEEEEEcC
Q psy16953 272 ADVLVNFASLRS-----------------AYDSTIETLGFP-QIRSIAIIAE 305 (806)
Q Consensus 272 lavivi~~~~~~-----------------~~~~~le~~~~~-gvk~~viis~ 305 (806)
..+ .++.... ....++++|.+. +++.+|.+|+
T Consensus 77 ~vi--h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 126 (321)
T 2pk3_A 77 YIF--HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS 126 (321)
T ss_dssp EEE--ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEE--EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence 533 3443211 134567777543 6888888886
No 384
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=26.00 E-value=2e+02 Score=24.71 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=51.8
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcC-CceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKAT-NGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD 439 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g-~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~ 439 (806)
-+|-+|..+-.....+...+.+.| .-+. .++.|. +.++.+. .....+|++-++..+..--++++.+++
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~-~~~~~~---------~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~ 83 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVR-VSETDD---------FLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARA 83 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEE-EECGGG---------GGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHG
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEE-EeccHH---------HHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHh
Confidence 469999999999998888888765 3222 223333 3344443 334567877776433322678888888
Q ss_pred cCCCCCEEEEE
Q psy16953 440 KRITKPLVAWC 450 (806)
Q Consensus 440 ~~~~KPVV~lk 450 (806)
.....|||++-
T Consensus 84 ~~~~~~ii~~s 94 (135)
T 3snk_A 84 LWATVPLIAVS 94 (135)
T ss_dssp GGTTCCEEEEE
T ss_pred hCCCCcEEEEe
Confidence 76688998874
No 385
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=25.89 E-value=3.3e+02 Score=28.04 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCCCEEEEEcC
Q psy16953 286 DSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~ 305 (806)
..++++|.+.+++.+|.+|+
T Consensus 134 ~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 134 LNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp HHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecc
Confidence 35778887789998888875
No 386
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.88 E-value=5.4e+02 Score=26.24 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEccCccccccCCccccccCCCCcccccccCCCCCCCEEEEeCC--h----hHHHHHHHH
Q psy16953 306 GIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRS--G----GMSNELNNI 379 (806)
Q Consensus 306 Gf~E~~~~~l~~~a~~~giriiGPN~~Gii~p~~~~ig~~~g~~~~~~~~~~~~~G~ValvSQS--G----~l~~~l~~~ 379 (806)
+++|+..+++.+++++.|-+ ||...- .+ ..-+...||++..+ . .+...+-+.
T Consensus 36 ~vs~~tr~rV~~~~~~lgY~---pn~~a~------------~l-------~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~ 93 (344)
T 3kjx_A 36 DVSDATRARVLAAAKELGYV---PNKIAG------------AL-------ASNRVNLVAVIIPSLSNMVFPEVLTGINQV 93 (344)
T ss_dssp CCCHHHHHHHHHHHHHHTCC---CCCCCS------------CS-------TTSCCSEEEEEESCSSSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCHHHH------------Hh-------hcCCCCEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 68899999999999998855 553210 00 01123457776532 2 233333344
Q ss_pred HHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEE
Q psy16953 380 ISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAW 449 (806)
Q Consensus 380 ~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~l 449 (806)
+.+ .|+...+...+. ..-...++++.+.+ ..+..|++..- . .+....+.+++ .+.|||++
T Consensus 94 a~~--~g~~~~~~~~~~--~~~~~~~~i~~l~~-~~vdGiIi~~~--~-~~~~~~~~l~~--~~iPvV~i 153 (344)
T 3kjx_A 94 LED--TELQPVVGVTDY--LPEKEEKVLYEMLS-WRPSGVIIAGL--E-HSEAARAMLDA--AGIPVVEI 153 (344)
T ss_dssp HTS--SSSEEEEEECTT--CHHHHHHHHHHHHT-TCCSEEEEECS--C-CCHHHHHHHHH--CSSCEEEE
T ss_pred HHH--CCCEEEEEeCCC--CHHHHHHHHHHHHh-CCCCEEEEECC--C-CCHHHHHHHHh--CCCCEEEE
Confidence 444 455555554433 12234456666554 56788877543 2 22445555554 67999988
No 387
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=25.80 E-value=91 Score=31.73 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCccEEEEEEccCC------cc--------h--HH--HHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 404 MDHILRYQADPEVKMIVLLGEVGG------VE--------E--YE--VCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 404 ~D~l~~l~~Dp~Tk~I~ly~Eigg------~~--------d--~~--f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
.+.++.+.+||++++|++-++-.. ++ + .+ +.+..++. ...||||+..-|.+-.
T Consensus 36 ~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 107 (257)
T 2ej5_A 36 TKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAG 107 (257)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred HHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECccccc
Confidence 455556666777777777665100 00 0 11 22223332 3789999999887764
No 388
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=25.69 E-value=82 Score=32.20 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc-----------------ch-HHHHH----HHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV-----------------EE-YEVCA----ALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~-----------------~d-~~f~~----a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++ |- .+ ..+.+ ..++. ...||||+..-|.+-.
T Consensus 37 L~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (261)
T 3pea_A 37 VTELIDQVEKDDNIRVVVIHGE--GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALG 111 (261)
T ss_dssp HHHHHHHHHHCTTCCEEEEEES--TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCceEEEEECC--CCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 4567777888889999888876 21 01 12222 22332 4789999999888774
No 389
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=25.65 E-value=93 Score=32.06 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCcc---h-H-------------HHH----HHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGVE---E-Y-------------EVC----AALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~~---d-~-------------~f~----~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-+.+. | . .+. +..++. ...||||+..-|.+-.
T Consensus 45 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 120 (272)
T 3qk8_A 45 LADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVG 120 (272)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEH
T ss_pred HHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 557777788888888888887711110 1 1 111 122222 4789999999888764
No 390
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=25.60 E-value=2.5e+02 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=14.9
Q ss_pred CceEEEEccChhH----HHhhhhcc
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFD 222 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~g 222 (806)
..+|+|.|.++-. ++.|++.|
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g 70 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKG 70 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC
Confidence 4579999998764 66777777
No 391
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=25.52 E-value=1e+02 Score=31.20 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc------------c-h-----HHHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV------------E-E-----YEVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~------------~-d-----~~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-..+ . + +.+.+..++. ...||||+..-|.+-.
T Consensus 32 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 104 (254)
T 3hrx_A 32 LYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAG 104 (254)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCEeee
Confidence 34566677777777777776651110 0 1 1222333333 4789999999887664
No 392
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=25.44 E-value=84 Score=32.80 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=13.5
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 101 ~~~kPvIAaV~G~a~G 116 (289)
T 3h0u_A 101 QLPAVTIAKLRGRARG 116 (289)
T ss_dssp TCSSEEEEEECSEEET
T ss_pred hCCCCEEEEECCEeeh
Confidence 3789999999888774
No 393
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=25.32 E-value=77 Score=32.39 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCC-------c--------ch-HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGG-------V--------EE-YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg-------~--------~d-~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++++|++-++-|. + .+ ..+ .+..++. ...||||+..-|.+-.
T Consensus 36 L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (260)
T 1sg4_A 36 LVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPA 110 (260)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCH
T ss_pred HHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeeh
Confidence 4566777778888888888876110 0 11 122 2223333 4789999999887764
No 394
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=25.31 E-value=87 Score=31.94 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 432 EVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 432 ~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
+++..+.+ ..||||+..-|.+-.
T Consensus 87 ~~~~~l~~--~~kPvIAav~G~a~G 109 (261)
T 1ef8_A 87 QITRMIQK--FPKPIISMVEGSVWG 109 (261)
T ss_dssp HHHHHHHH--CSSCEEEEECSEEET
T ss_pred HHHHHHHh--CCCCEEEEECCEEEe
Confidence 34444443 789999998887764
No 395
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=25.26 E-value=1.9e+02 Score=29.08 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=47.4
Q ss_pred ceEEEEccChhH----HHhhhhc--ccccccCCCcccceeEeecCCCcc-cccccceee--cccccccHHHHhcc-CCCe
Q psy16953 203 TKAIVWGMQTRA----VQSMLDF--DFVCRRSEPSVAAMVYPFTGDHKL-KFYWGHKEV--LIPVYKKMEDAMSK-NKDA 272 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~--gf~~~~~~~~~~g~iypvnp~~~~-~~~~g~~~i--~~p~y~sv~daip~-~~Dl 272 (806)
.+|+|.|.++-. ++.|++. |+ .|+-+..+... +..-+...+ .+.-..++.+++.+ .+|.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-----------~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-----------NVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-----------GEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-----------EEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 479999998764 5667766 65 33333221100 000000111 24445567775443 4554
Q ss_pred eEEEeecCChh----------------hHHHHHHHhcCCCCCEEEEEcC
Q psy16953 273 DVLVNFASLRS----------------AYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 273 avivi~~~~~~----------------~~~~~le~~~~~gvk~~viis~ 305 (806)
+|.++.... ....++++|.+.|++.+|.+|+
T Consensus 72 --vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 118 (312)
T 2yy7_A 72 --IYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSS 118 (312)
T ss_dssp --EEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEE
T ss_pred --EEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 444443211 1235788888889988887775
No 396
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.17 E-value=2.7e+02 Score=22.54 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=52.1
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|..+-.....+...+...|. . +.... +..+.++++.+. ...+|++-....+....++++.+++..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~--~-v~~~~-------~~~~~~~~l~~~-~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGF--K-VIWLV-------DGSTALDQLDLL-QPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC--E-EEEES-------CHHHHHHHHHHH-CCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCc--E-EEEec-------CHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 578888888888888888877554 2 23322 235777776654 356777776643433378888888864
Q ss_pred --CCCCEEEEE
Q psy16953 442 --ITKPLVAWC 450 (806)
Q Consensus 442 --~~KPVV~lk 450 (806)
...|||++-
T Consensus 72 ~~~~~~ii~~~ 82 (119)
T 2j48_A 72 ADPHPPLVLFL 82 (119)
T ss_dssp CCSSCCCEEEE
T ss_pred ccCCCCEEEEe
Confidence 678988773
No 397
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=24.99 E-value=91 Score=31.85 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCC------cc------------h--HHHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGG------VE------------E--YEVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg------~~------------d--~~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++++|++-++-.. ++ + .++...+. ...||||+..-|.+-.
T Consensus 37 L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~--~~~kPvIAav~G~a~G 108 (258)
T 4fzw_A 37 LVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQ--AFNKPLIAAVNGYALG 108 (258)
T ss_dssp HHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHH--TCCSCEEEEECSEEET
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHH--HCCCCEEEEEcCccee
Confidence 3456666777777777777665110 00 0 12233333 3789999998887664
No 398
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.90 E-value=4.8e+02 Score=25.87 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCeeEEEEEeccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccC-Cc
Q psy16953 79 GAQSWISERMGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTL-GI 157 (806)
Q Consensus 79 e~~~~~~~~~g~~i~~~~i~GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~-g~ 157 (806)
.+-+|+.+..+..-|+.++.|.-.. .....-.+|+.++++++ +++++....+...+++.+.+++.-+.. .+
T Consensus 118 ~a~~~l~~~g~~~~~i~~i~g~~~~-~~~~~R~~Gf~~~l~~~-------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (297)
T 3rot_A 118 KLGEKALELTPSAKRALVLNPQPGH-IGLEKRAYGIKTILQDK-------GIFFEELDVGTDPNQVQSRVKSYFKIHPET 189 (297)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCTTC-HHHHHHHHHHHHHHHHT-------TCEEEEEECCSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCceEEEEeCCCCc-HHHHHHHHHHHHHHHhc-------CCeEEEeecCCChHHHHHHHHHHHHhCCCC
Confidence 3445666666556678877765433 22223357999999883 556655556777888888877743222 34
Q ss_pred cEEEeCCcchHHHHHHHH
Q psy16953 158 PLFVFGPETHMTAIVGMA 175 (806)
Q Consensus 158 ~i~~~~~~~~m~~~~~~a 175 (806)
...++.++.....+++.+
T Consensus 190 ~ai~~~~d~~A~g~~~al 207 (297)
T 3rot_A 190 NIIFCLTSQALDPLGQML 207 (297)
T ss_dssp CEEEESSHHHHHHHHHHH
T ss_pred CEEEEcCCcchHHHHHHH
Confidence 455555533334444433
No 399
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=24.62 E-value=2.9e+02 Score=28.45 Aligned_cols=144 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred CEEEEEcCCCCHHHHHHHHH--HHHHcCCeEEccCccccc---cCCccccccCCCCcccccccCCCCCC--CEEEEeCCh
Q psy16953 298 RSIAIIAEGIPENMTRKLNL--LAKEKGVSIIGPATVGGL---KPGCFKIGNTGGMMDNILHSKLYRPG--SVAYVSRSG 370 (806)
Q Consensus 298 k~~viis~Gf~E~~~~~l~~--~a~~~giriiGPN~~Gii---~p~~~~ig~~~g~~~~~~~~~~~~~G--~ValvSQSG 370 (806)
..+..+-..+.......+.. .+.+.++.++.|++..-- +|..+++..................| +|++|....
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~ 151 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQED 151 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCc
Q ss_pred h----HHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHhcCCCCC
Q psy16953 371 G----MSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKDKRITKP 445 (806)
Q Consensus 371 ~----l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~~~~~KP 445 (806)
. ....+...+.+.|+-+......-.. +.++...+.-+.+ ...++|++... ..+ ..|++++++...+.|
T Consensus 152 ~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~---~~d~~~~~~~l~~-~~~d~v~~~~~---~~~a~~~~~~~~~~g~~~~ 224 (364)
T 3lop_A 152 ALGKEAITGVERTLKAHALAITAMASYPRN---TANVGPAVDKLLA-ADVQAIFLGAT---AEPAAQFVRQYRARGGEAQ 224 (364)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEECTT---SCCCHHHHHHHHH-SCCSEEEEESC---HHHHHHHHHHHHHTTCCCE
T ss_pred hhhHHHHHHHHHHHHHcCCcEEEEEEecCC---CccHHHHHHHHHh-CCCCEEEEecC---cHHHHHHHHHHHHcCCCCe
Q ss_pred EEE
Q psy16953 446 LVA 448 (806)
Q Consensus 446 VV~ 448 (806)
++.
T Consensus 225 ~i~ 227 (364)
T 3lop_A 225 LLG 227 (364)
T ss_dssp EEE
T ss_pred EEE
No 400
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=24.47 E-value=1.4e+02 Score=31.41 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=55.8
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+++..+|+ +|+-.++... +. +...+.++.++ -...|+.++
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~G~-----------~V~~~dr~~~-------~~-~~~~~~~l~el-l~~aDvV~l-- 180 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAALGA-----------QVRGFSRTPK-------EG-PWRFTNSLEEA-LREARAAVC-- 180 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC-----------EEEEECSSCC-------CS-SSCCBSCSHHH-HTTCSEEEE--
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-----------EEEEECCCcc-------cc-CcccCCCHHHH-HhhCCEEEE--
Confidence 455799999873 34677778876 6777776531 01 23346788884 444566555
Q ss_pred ecCChhhHH-----HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 278 FASLRSAYD-----STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 278 ~~~~~~~~~-----~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.++...... ..++.+. + .+++|-++--+-.+++.|.+..++..+.
T Consensus 181 ~~P~~~~t~~~i~~~~l~~mk-~--gailin~srg~~vd~~aL~~aL~~g~i~ 230 (303)
T 1qp8_A 181 ALPLNKHTRGLVKYQHLALMA-E--DAVFVNVGRAEVLDRDGVLRILKERPQF 230 (303)
T ss_dssp CCCCSTTTTTCBCHHHHTTSC-T--TCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred eCcCchHHHHHhCHHHHhhCC-C--CCEEEECCCCcccCHHHHHHHHHhCCce
Confidence 454433332 3444443 3 3344444432334566777777776544
No 401
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}
Probab=24.38 E-value=97 Score=33.84 Aligned_cols=36 Identities=6% Similarity=-0.113 Sum_probs=26.5
Q ss_pred CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 269 NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
.+|+++. +.|.....+..+++.++|++ +|-.|+-|.
T Consensus 93 ~~Dvvf~---alp~~~s~~~~~~~~~~G~~-VIDlSa~fR 128 (381)
T 3hsk_A 93 ECDVVFS---GLDADVAGDIEKSFVEAGLA-VVSNAKNYR 128 (381)
T ss_dssp GCSEEEE---CCCHHHHHHHHHHHHHTTCE-EEECCSTTT
T ss_pred cCCEEEE---CCChhHHHHHHHHHHhCCCE-EEEcCCccc
Confidence 3566554 88888888888888778987 666777663
No 402
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=24.32 E-value=2e+02 Score=29.04 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHcCCeeEEEEEe-ccccchhhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcc
Q psy16953 75 TDFKGAQSWISERMGKDQVVLITG-GGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGK 153 (806)
Q Consensus 75 ~~~~e~~~~~~~~~g~~i~~~~i~-GGI~~~~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~ 153 (806)
.+..+.-+|+-+..|. ++++-+ ||.- .++ +...+.+ ...+++++.=-.|-..+|-.+..++..+
T Consensus 31 ~~~~~~l~~a~~~~~~--~v~va~SGG~D---S~v-----LL~ll~~-----~~~~v~vv~idtg~~~~et~~~~~~~~~ 95 (252)
T 2o8v_A 31 LDAEGRVAWALDNLPG--EYVLSSSFGIQ---AAV-----SLHLVNQ-----IRPDIPVILTDTGYLFPETYRFIDELTD 95 (252)
T ss_dssp SCHHHHHHHHHTTSCS--CEEEECCCSTT---HHH-----HHHHHHH-----HSTTCEEEECCCSCBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC--CEEEEeCCCHH---HHH-----HHHHHHH-----hCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 3677777888777764 345544 7773 333 3445555 2357777766667666788899999999
Q ss_pred cCCccEEEeCCcchHH
Q psy16953 154 TLGIPLFVFGPETHMT 169 (806)
Q Consensus 154 ~~g~~i~~~~~~~~m~ 169 (806)
.+|+|++++.++....
T Consensus 96 ~~gi~~~v~~~~~~~~ 111 (252)
T 2o8v_A 96 KLKLNLKVYRATESAA 111 (252)
T ss_dssp HTTCEEEECCCSSCHH
T ss_pred HhCCceEEEcCCCCHH
Confidence 9999999999865433
No 403
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=24.27 E-value=2.1e+02 Score=28.70 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=58.6
Q ss_pred CCCCEEEEeC-ChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCc-ch-HHHHH
Q psy16953 359 RPGSVAYVSR-SGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGV-EE-YEVCA 435 (806)
Q Consensus 359 ~~G~ValvSQ-SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~-~d-~~f~~ 435 (806)
..|.+++|+- ||++|.++...+.++|. +++-++.. .-...+.++.+.+....++..+.+.+... .. +++++
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI---MVVLTCRD---VTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESC---HHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCC---HHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHH
Confidence 4578888876 68999999999988864 45555554 22345667777776666777777775444 33 56666
Q ss_pred HHHhcCCCCCEEEEEeCcCc
Q psy16953 436 ALKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 436 a~r~~~~~KPVV~lk~Grs~ 455 (806)
.+.+.-.+.=+++..+|...
T Consensus 84 ~~~~~~g~iD~lv~nAg~~~ 103 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGVAG 103 (311)
T ss_dssp HHHHHHSSCCEEEECCCCCS
T ss_pred HHHHhCCCCCEEEECCcccc
Confidence 66553234457777666543
No 404
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.21 E-value=3.4e+02 Score=23.30 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=69.5
Q ss_pred CEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHhcC
Q psy16953 362 SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKR 441 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~ 441 (806)
+|-+|..+-.....+...+.+.|. . +.... +..+.++++.+. ...+|++-+ ..+....++++.+++..
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~--~-v~~~~-------~~~~a~~~l~~~-~~dlvi~d~-~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGF--N-VIWAK-------NEQEAFTFLRRE-KIDLVFVDV-FEGEESLNLIRRIREEF 73 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTC--E-EEEES-------SHHHHHHHHTTS-CCSEEEEEC-TTTHHHHHHHHHHHHHC
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCC--E-EEEEC-------CHHHHHHHHhcc-CCCEEEEeC-CCCCcHHHHHHHHHHHC
Confidence 588899998888888888776543 2 22222 245788887764 456776655 33332267888888766
Q ss_pred CCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 442 ITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
...|||++-. .... . ....+.++|+ ..+-+.++|...++.++..-
T Consensus 74 ~~~pii~ls~-~~~~-------------------~----~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 74 PDTKVAVLSA-YVDK-------------------D----LIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TTCEEEEEES-CCCH-------------------H----HHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEEC-CCCH-------------------H----HHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 6789988732 2111 0 1222334454 23457888888888776543
No 405
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=24.17 E-value=1.5e+02 Score=28.74 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCccccc---ccc-eee--cccccccHHHHhccCC
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFY---WGH-KEV--LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~---~g~-~~i--~~p~y~sv~daip~~~ 270 (806)
.+.+|+|.|.++.. ++.|++.|+ .|+-+..+...... -+. ..+ .+. .++.+++ +.+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-----------~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~-~~~ 85 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-----------EPVAMVRNEEQGPELRERGASDIVVANLE--EDFSHAF-ASI 85 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----------EEEEEESSGGGHHHHHHTTCSEEEECCTT--SCCGGGG-TTC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-----------eEEEEECChHHHHHHHhCCCceEEEcccH--HHHHHHH-cCC
Confidence 45689999998764 677888886 44444432110000 011 111 133 6666643 345
Q ss_pred CeeEEEeecCCh-------------hhHHHHHHHhcCCCCCEEEEEcC
Q psy16953 271 DADVLVNFASLR-------------SAYDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 271 Dlavivi~~~~~-------------~~~~~~le~~~~~gvk~~viis~ 305 (806)
|. +|+.+... .....++++|.+.+++.+|.+|+
T Consensus 86 D~--vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 131 (236)
T 3e8x_A 86 DA--VVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS 131 (236)
T ss_dssp SE--EEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CE--EEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence 54 33344321 12345778887788888888876
No 406
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=23.99 E-value=1.4e+02 Score=30.91 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=42.7
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChh----hHHHHHHHhcCCCCCEEEEEcC----C--CCHHHHHHHHHHHHHcCCe
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRS----AYDSTIETLGFPQIRSIAIIAE----G--IPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~----~~~~~le~~~~~gvk~~viis~----G--f~E~~~~~l~~~a~~~gir 325 (806)
-|+|.+..++ .......++.+-..+.. ..++ +++....+++.+++.+. | ++.+..++|.++|+++|+.
T Consensus 112 ~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~d~~~-l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~ 189 (375)
T 3op7_A 112 YPTYQQLYDI-PKSLGAEVDLWQIEEENGWLPDLEK-LRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY 189 (375)
T ss_dssp ESSCTHHHHH-HHHTTCEEEEEEEEGGGTTEECHHH-HHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCE
T ss_pred CCCchhHHHH-HHHcCCEEEEEeccccCCCCCCHHH-HHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 6677776663 33233344422221111 3344 44443467887766532 3 3446789999999999998
Q ss_pred EEccCc
Q psy16953 326 IIGPAT 331 (806)
Q Consensus 326 iiGPN~ 331 (806)
++==++
T Consensus 190 li~De~ 195 (375)
T 3op7_A 190 ILSDEV 195 (375)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 885444
No 407
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=23.72 E-value=1.4e+02 Score=31.89 Aligned_cols=90 Identities=9% Similarity=0.159 Sum_probs=49.2
Q ss_pred CceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCC--CcccccccceeecccccccHHH-HhccCCCeeE
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGD--HKLKFYWGHKEVLIPVYKKMED-AMSKNKDADV 274 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~--~~~~~~~g~~~i~~p~y~sv~d-aip~~~Dlav 274 (806)
..+|+|+|++|+. ++.|.+.+| | .-++..++.. .++.+.|....+- + ..... .+ ..+|+++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~------p--~~elv~i~s~~~~G~~~~~~~~~i~--~-~~~~~~~~-~~vDvVf 70 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREF------P--VDELFLLASERSEGKTYRFNGKTVR--V-QNVEEFDW-SQVHIAL 70 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTC------C--EEEEEEEECTTTTTCEEEETTEEEE--E-EEGGGCCG-GGCSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCC------C--CEEEEEEECCCCCCCceeecCceeE--E-ecCChHHh-cCCCEEE
Confidence 3589999998876 444555433 2 2256666632 2222323222221 1 11111 12 3466655
Q ss_pred EEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 275 LVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 275 ivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
. +.|...-.+..+.+.++|++ +|..|+-|
T Consensus 71 ~---a~g~~~s~~~a~~~~~~G~~-vId~s~~~ 99 (336)
T 2r00_A 71 F---SAGGELSAKWAPIAAEAGVV-VIDNTSHF 99 (336)
T ss_dssp E---CSCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred E---CCCchHHHHHHHHHHHcCCE-EEEcCCcc
Confidence 4 77887777777777778885 55556655
No 408
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=23.69 E-value=6.1e+02 Score=26.06 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=52.9
Q ss_pred CeeEEEEEe---ccccch--hhhhhhhhHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCC
Q psy16953 90 KDQVVLITG---GGIANF--TNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGP 164 (806)
Q Consensus 90 ~~i~~~~i~---GGI~~~--~~vA~~~~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~ 164 (806)
.+||+-.++ |..+.. ..+. +|+-.|+++....+...++.++++-.+.+.+++.+..+++-+.-++...+-..
T Consensus 5 ~~i~IG~~~p~sg~~a~~~g~~~~---~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~ 81 (379)
T 3n0w_A 5 GQVTLGVLTDMSSVYADSAGKGSV---AAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVV 81 (379)
T ss_dssp -CCEEEEEECSSSTTTTTSHHHHH---HHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CcEEEEEEeCCccccccccCHHHH---HHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 456666655 334333 3344 47888888863333356789999999999999998888875545676554333
Q ss_pred cchHHHHHHHHhc
Q psy16953 165 ETHMTAIVGMALG 177 (806)
Q Consensus 165 ~~~m~~~~~~a~~ 177 (806)
.+..+.++...++
T Consensus 82 ~s~~~~a~~~~~~ 94 (379)
T 3n0w_A 82 NSGTALAINNLVK 94 (379)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 3444545444443
No 409
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=23.63 E-value=40 Score=35.55 Aligned_cols=44 Identities=34% Similarity=0.606 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhcccCceEEEE-------------EcCCCHHHHHHHHHHhcccCCccEE
Q psy16953 114 IVTALTEFQSKLIEHKISIFVR-------------RAGPNYQEGLRIIREVGKTLGIPLF 160 (806)
Q Consensus 114 ii~al~~~~~~~~~~~~~ivvR-------------~~G~n~~eG~~~l~~~g~~~g~~i~ 160 (806)
+.+.+++..+++ .+++|.| ..|...++|+++|++..+++|+|+-
T Consensus 36 ~A~~lk~~~~~~---~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 36 TAGRLKEICEKL---NVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp HHHHHHHHHHHH---TCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHc---CCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 444555533333 5777776 4466679999999999999999975
No 410
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=23.56 E-value=87 Score=31.55 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=17.0
Q ss_pred CCceEEEEccChhH----HHhhhhccc
Q psy16953 201 EQTKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 201 ~~t~v~V~G~~~r~----~~~ll~~gf 223 (806)
+.++|+|.|.++-. ++.|++.|+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~ 37 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNV 37 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCC
Confidence 67799999998765 566777676
No 411
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=23.55 E-value=1.4e+02 Score=32.07 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=29.9
Q ss_pred cHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 261 KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 261 sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
+..+ +.+.+|+++. +.|...-.+..+.+.++|++ +|-.|+-|.
T Consensus 68 ~~~~-~~~~~Dvvf~---a~p~~~s~~~~~~~~~~g~~-vIDlSa~fR 110 (337)
T 3dr3_A 68 DISE-FSPGVDVVFL---ATAHEVSHDLAPQFLEAGCV-VFDLSGAFR 110 (337)
T ss_dssp SGGG-TCTTCSEEEE---CSCHHHHHHHHHHHHHTTCE-EEECSSTTS
T ss_pred CHHH-HhcCCCEEEE---CCChHHHHHHHHHHHHCCCE-EEEcCCccc
Confidence 3444 4345676555 88888878888888778987 667787774
No 412
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=23.42 E-value=1.8e+02 Score=32.24 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=37.7
Q ss_pred ccccccHHHHhccCCCeeEEEeecCChh---------hHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHc
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFASLRS---------AYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEK 322 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~~~~---------~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~ 322 (806)
+.+..++++++. ..|+.++ +++.+. .+.++++.+.. ..-..+||..+.++....+++.+..++.
T Consensus 66 l~~t~d~~ea~~-~aDvVii--aVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~ 139 (450)
T 3gg2_A 66 LRFGTEIEQAVP-EADIIFI--AVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEE 139 (450)
T ss_dssp EEEESCHHHHGG-GCSEEEE--CCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHH
T ss_pred EEEECCHHHHHh-cCCEEEE--EcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHh
Confidence 445567777543 3565555 443332 67777776642 2234677777888776666666665553
No 413
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=23.36 E-value=5.5e+02 Score=26.18 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhhhhcccCceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeCCcchHHHHHHHHhcC
Q psy16953 112 KGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGK 178 (806)
Q Consensus 112 ~gii~al~~~~~~~~~~~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~~~~~m~~~~~~a~~~ 178 (806)
+|+-.|+++.-+ ....++.++++-.+.+.+++.+.++++-.+-++...+-...+..+.++...++.
T Consensus 38 ~g~~~a~~~in~-i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~ 103 (366)
T 3td9_A 38 EGIQIAHEEKPT-VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEE 103 (366)
T ss_dssp HHHHHHHHHCCE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCchhHHHHHHHHHh
Confidence 466677776322 224558888888888888888888877555557655533334444454444443
No 414
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.35 E-value=81 Score=33.24 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=72.0
Q ss_pred CEEEEeCChhHHH-HHHHHHHhc-CCceeEEEeecCCCCCCCC-HHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHH
Q psy16953 362 SVAYVSRSGGMSN-ELNNIISKA-TNGVYEGVAIGGDRYPGTT-FMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALK 438 (806)
Q Consensus 362 ~ValvSQSG~l~~-~l~~~~~~~-g~G~s~~vs~Gn~~~~d~~-~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r 438 (806)
+||+|.- |.++. ..+..+.+. ++-+..+++.-.+. .++. +.|+=+.+.++|+..+|++..- .-...+....+
T Consensus 27 rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp--~~~H~~~~~~a- 101 (330)
T 4ew6_A 27 NLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMP--PQYRYEAAYKA- 101 (330)
T ss_dssp EEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSC--HHHHHHHHHHH-
T ss_pred eEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCC--cHHHHHHHHHH-
Confidence 6999985 78886 455555553 33333334333222 2322 2344444444488888765443 11113333332
Q ss_pred hcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCCcccCChhhHHHHHHHHHHhhhhCCccc
Q psy16953 439 DKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIV 517 (806)
Q Consensus 439 ~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGvi~v~~~~EL~~~~~all~~L~~~g~i~ 517 (806)
+..+|+|++=|+-.... ..+....++.++.|+.....+..-+.-.-..+++++++|.|.
T Consensus 102 -l~aGkhVl~EKP~a~~~-------------------~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG 160 (330)
T 4ew6_A 102 -LVAGKHVFLEKPPGATL-------------------SEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLASTTIK 160 (330)
T ss_dssp -HHTTCEEEECSSSCSSH-------------------HHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHHSSCEE
T ss_pred -HHcCCcEEEeCCCCCCH-------------------HHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHhcCCce
Confidence 23679999876532221 223446778888998776666555555555566666777664
No 415
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=23.23 E-value=80 Score=32.29 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCccEEEEEE-ccC----C--cc-------h-HH----H-HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLG-EVG----G--VE-------E-YE----V-CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~-Eig----g--~~-------d-~~----f-~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-+ +-+ | +. + .. + .+..++. ...||||+..-|.+-.
T Consensus 40 L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 114 (265)
T 2ppy_A 40 FNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVG 114 (265)
T ss_dssp HHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEET
T ss_pred HHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEee
Confidence 445666667777777777777 410 0 00 1 11 2 2333333 3789999999887764
No 416
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=23.21 E-value=2.2e+02 Score=30.07 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=67.4
Q ss_pred cccccccccccccCCCHHHHHhccccccCCCeEEccCccccccCccCceeecCCHHHHHHHHHHHcCCee---EEEEEec
Q psy16953 23 TAAAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPDQLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQ---VVLITGG 99 (806)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~VvKpd~l~~~RGK~Glv~l~~~~~e~~~~~~~~~g~~i---~~~~i~G 99 (806)
.|..|++...+.-++..++.++.. +.-.-|+.. -| +++.-|.|+....+-+++ .|.++ ++|+++.
T Consensus 95 nVTiP~K~~v~~~lD~ls~~A~~i---GAVNTi~~~------~g--~l~G~NTD~~Gf~~~L~~-~~~~l~gk~~lVlGa 162 (315)
T 3tnl_A 95 NVSMPNKTNIHKYLDKLSPAAELV---GAVNTVVND------DG--VLTGHITDGTGYMRALKE-AGHDIIGKKMTICGA 162 (315)
T ss_dssp EECTTSTTTGGGGCSEECHHHHHH---TCCSEEEEE------TT--EEEEECCHHHHHHHHHHH-TTCCCTTSEEEEECC
T ss_pred EEcCCChHHHHHHHHhcCHHHHHh---CccceEEec------CC--EEEEeCCCHHHHHHHHHH-cCCCccCCEEEEECC
Confidence 455666655444455444444432 322334432 23 378899999998888876 45555 7888885
Q ss_pred cccchhhhhhhhhHHHHHHHHhhhhhccc-CceEEEEEcCCCHHHHHHHHHHhcccCCccEEEeC
Q psy16953 100 GIANFTNVAATFKGIVTALTEFQSKLIEH-KISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFG 163 (806)
Q Consensus 100 GI~~~~~vA~~~~gii~al~~~~~~~~~~-~~~ivvR~~G~n~~eG~~~l~~~g~~~g~~i~~~~ 163 (806)
| -++ +.++.+|.+ ... ++-|+-| .....+.+.++.++.+...++.+.+..
T Consensus 163 G-----G~g---~aia~~L~~-----~Ga~~V~i~nR-~~~~~~~a~~la~~~~~~~~~~~~~~~ 213 (315)
T 3tnl_A 163 G-----GAA---TAICIQAAL-----DGVKEISIFNR-KDDFYANAEKTVEKINSKTDCKAQLFD 213 (315)
T ss_dssp S-----HHH---HHHHHHHHH-----TTCSEEEEEEC-SSTTHHHHHHHHHHHHHHSSCEEEEEE
T ss_pred C-----hHH---HHHHHHHHH-----CCCCEEEEEEC-CCchHHHHHHHHHHhhhhcCCceEEec
Confidence 4 223 357888887 454 5555444 344467777766666555565555543
No 417
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.19 E-value=1.9e+02 Score=25.70 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=53.3
Q ss_pred ceEEEEccChhHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEeecCCh
Q psy16953 203 TKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLR 282 (806)
Q Consensus 203 t~v~V~G~~~r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi~~~~~ 282 (806)
.+++|+|= ...+-.++-.|+ .+|+|+.. +++ ..++..+. +..|.++|++.=.-+
T Consensus 4 mkiaVIgD-~dtv~GFrLaGi-----------~~~~v~~~---------ee~-~~~~~~l~----~~~digIIlIte~~a 57 (109)
T 2d00_A 4 VRMAVIAD-PETAQGFRLAGL-----------EGYGASSA---------EEA-QSLLETLV----ERGGYALVAVDEALL 57 (109)
T ss_dssp CCEEEEEC-HHHHHHHHHTTS-----------EEEECSSH---------HHH-HHHHHHHH----HHCCCSEEEEETTTC
T ss_pred cEEEEEeC-HHHHHHHHHcCC-----------eEEEeCCH---------HHH-HHHHHHHh----hCCCeEEEEEeHHHH
Confidence 47899997 445666666775 56888643 111 23333333 346788887666667
Q ss_pred hhHHHHHHHhc-CCCCCEEEEEcCCC
Q psy16953 283 SAYDSTIETLG-FPQIRSIAIIAEGI 307 (806)
Q Consensus 283 ~~~~~~le~~~-~~gvk~~viis~Gf 307 (806)
..++..++... ....+.++-|.+..
T Consensus 58 ~~i~~~i~~~~~~~~~P~Il~IPs~~ 83 (109)
T 2d00_A 58 PDPERAVERLMRGRDLPVLLPIAGLK 83 (109)
T ss_dssp SCHHHHHHHHTTCCCCCEEEEESCGG
T ss_pred HhhHHHHHHHHhCCCCeEEEEECCCc
Confidence 78888999985 57789999888755
No 418
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=23.14 E-value=2.7e+02 Score=28.04 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCCCEEEEEcC
Q psy16953 286 DSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 286 ~~~le~~~~~gvk~~viis~ 305 (806)
..++++|.+.+++.+|.+|+
T Consensus 94 ~~l~~a~~~~~~~~iv~~SS 113 (312)
T 3ko8_A 94 FNVLEWARQTGVRTVVFASS 113 (312)
T ss_dssp HHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCc
Confidence 35788888889998888886
No 419
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=23.08 E-value=1.1e+02 Score=29.15 Aligned_cols=21 Identities=5% Similarity=-0.208 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcC
Q psy16953 285 YDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~ 305 (806)
...++++|.+.+++.+|.+|+
T Consensus 94 ~~~l~~~~~~~~~~~~v~~Ss 114 (215)
T 2a35_A 94 PLAVGKRALEMGARHYLVVSA 114 (215)
T ss_dssp HHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEECC
Confidence 345777887788888888887
No 420
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=23.04 E-value=1e+02 Score=31.89 Aligned_cols=54 Identities=17% Similarity=0.373 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc-----------------ch--HHH----HHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV-----------------EE--YEV----CAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~-----------------~d--~~f----~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-..+ .+ ..+ .+..++. ...||||+..-|.+-.
T Consensus 47 L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~G 124 (274)
T 4fzw_C 47 LAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAG 124 (274)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceee
Confidence 44567777788888888887661100 01 111 1222222 3789999999888764
No 421
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.89 E-value=1.1e+02 Score=32.17 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=50.3
Q ss_pred hhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC
Q psy16953 410 YQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG 489 (806)
Q Consensus 410 l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG 489 (806)
+.+|++..+|++..- .-...+.+..+- ..+|+|++=|+-.... ..+....++.++.|
T Consensus 60 ~l~~~~~D~V~i~tp--~~~h~~~~~~al--~~gk~v~~EKP~~~~~-------------------~~~~~l~~~a~~~g 116 (344)
T 3euw_A 60 VFARDDIDGIVIGSP--TSTHVDLITRAV--ERGIPALCEKPIDLDI-------------------EMVRACKEKIGDGA 116 (344)
T ss_dssp HTTCSCCCEEEECSC--GGGHHHHHHHHH--HTTCCEEECSCSCSCH-------------------HHHHHHHHHHGGGG
T ss_pred HhcCCCCCEEEEeCC--chhhHHHHHHHH--HcCCcEEEECCCCCCH-------------------HHHHHHHHHHHhcC
Confidence 456788888877665 222244443332 3679999877522221 12344677888999
Q ss_pred CcccCChhhHHHHHHHHHHhhhhCCcc
Q psy16953 490 AHVPSSFDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 490 vi~v~~~~EL~~~~~all~~L~~~g~i 516 (806)
+...-.+..-+.-.-..+++++++|.|
T Consensus 117 ~~~~v~~~~r~~p~~~~~k~~i~~g~i 143 (344)
T 3euw_A 117 SKVMLGFNRRFDPSFAAINARVANQEI 143 (344)
T ss_dssp GGEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred CeEEecchhhcCHHHHHHHHHHhcCCC
Confidence 877666655555555556666666655
No 422
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=22.89 E-value=3.2e+02 Score=28.13 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEEccCccc-------cccCCccccccCCCCccccc
Q psy16953 281 LRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVG-------GLKPGCFKIGNTGGMMDNIL 353 (806)
Q Consensus 281 ~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~giriiGPN~~G-------ii~p~~~~ig~~~g~~~~~~ 353 (806)
|......+-+-+.+.+|..++ ..+.......+...+++.++.++.|++.. -.+|..+++...........
T Consensus 74 ~~~~~~~~~~l~~~~~v~~ii---g~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (386)
T 3sg0_A 74 PTKAAQNARKLLSEEKVDVLI---GSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAI 150 (386)
T ss_dssp HHHHHHHHHHHHHTSCCSEEE---CCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCceEEE---CCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHH
Q ss_pred ccCCCCCC--CEEEEeCChh----HHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCC
Q psy16953 354 HSKLYRPG--SVAYVSRSGG----MSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGG 427 (806)
Q Consensus 354 ~~~~~~~G--~ValvSQSG~----l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg 427 (806)
.......| +|++|..... ....+.+.+.+.|+-+......-.. +.++...+..+.+ ....+|++... +
T Consensus 151 ~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~---~~d~~~~~~~~~~-~~~dav~~~~~--~ 224 (386)
T 3sg0_A 151 GKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS---DASVTGQVLKIIA-TKPDAVFIASA--G 224 (386)
T ss_dssp HHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT---CSCCHHHHHHHHH-TCCSEEEEECC--S
T ss_pred HHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC---CCcHHHHHHHHHh-cCCCEEEEecC--c
Q ss_pred cchHHHHHHHHhcCCCCCEE
Q psy16953 428 VEEYEVCAALKDKRITKPLV 447 (806)
Q Consensus 428 ~~d~~f~~a~r~~~~~KPVV 447 (806)
..-..|++++++...+.|++
T Consensus 225 ~~a~~~~~~~~~~g~~~~~~ 244 (386)
T 3sg0_A 225 TPAVLPQKALRERGFKGAIY 244 (386)
T ss_dssp GGGHHHHHHHHHTTCCSEEE
T ss_pred chHHHHHHHHHHcCCCCcEE
No 423
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=22.85 E-value=95 Score=31.95 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCCCEEEEEeCcCcC
Q psy16953 432 EVCAALKDKRITKPLVAWCIGTCAS 456 (806)
Q Consensus 432 ~f~~a~r~~~~~KPVV~lk~Grs~~ 456 (806)
+++..+++ ..||||+..-|.+-.
T Consensus 98 ~~~~~l~~--~~kPvIAav~G~a~G 120 (273)
T 2uzf_A 98 DLQRLIRI--IPKPVIAMVKGYAVG 120 (273)
T ss_dssp HHHHHHHH--SSSCEEEEECEEEET
T ss_pred HHHHHHHh--CCCCEEEEECCEEee
Confidence 44444444 689999998887764
No 424
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=22.70 E-value=5.1e+02 Score=26.12 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=62.0
Q ss_pred CEEEEeCChhHHHHHHHHHHhc-CCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HHHHHHHHh
Q psy16953 362 SVAYVSRSGGMSNELNNIISKA-TNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YEVCAALKD 439 (806)
Q Consensus 362 ~ValvSQSG~l~~~l~~~~~~~-g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~f~~a~r~ 439 (806)
+|+++.-+|.|+..+...+.+. +.-+..++..+ -++.+++. .++ .+++=|-- ..- .+.++.+.+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------~dl~~~~~---~~~--DvvIDfT~---p~a~~~~~~~a~~ 67 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------DPLSLLTD---GNT--EVVIDFTH---PDVVMGNLEFLID 67 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------CCTHHHHH---TTC--CEEEECSC---TTTHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------CCHHHHhc---cCC--cEEEEccC---hHHHHHHHHHHHH
Confidence 4889999999999999887755 55444444332 22334332 233 44443332 222 445544444
Q ss_pred cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHH---HcCCcccCChhhHHHHHHHHHH
Q psy16953 440 KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLA---QAGAHVPSSFDTLGDIIGSVYK 508 (806)
Q Consensus 440 ~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~---qaGvi~v~~~~EL~~~~~all~ 508 (806)
.+||+|+-++|-++. ......++.+ ..+++...++--=..++..+.+
T Consensus 68 --~g~~~VigTTG~~~e--------------------~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 68 --NGIHAVVGTTGFTAE--------------------RFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp --TTCEEEECCCCCCHH--------------------HHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHH
T ss_pred --cCCCEEEcCCCCCHH--------------------HHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHH
Confidence 679999877664442 0112455666 3456777776554444444443
No 425
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=22.59 E-value=90 Score=31.96 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=13.6
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 100 ~~~kPvIAav~G~a~G 115 (265)
T 3rsi_A 100 TLTKPLIAAVNGACLG 115 (265)
T ss_dssp CCSSCEEEEECSCEET
T ss_pred CCCCCEEEEECCeeeH
Confidence 4789999999888774
No 426
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=22.30 E-value=1e+02 Score=31.84 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCC------cch-----------H-------HHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGG------VEE-----------Y-------EVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg------~~d-----------~-------~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-+. +++ . .+.+..++. ...||||+..-|.+-.
T Consensus 52 L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 130 (279)
T 3t3w_A 52 LDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCIS 130 (279)
T ss_dssp HHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEG
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhH
Confidence 4566667777888888888776110 000 0 111222222 3789999999888774
No 427
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=22.09 E-value=37 Score=36.19 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=48.4
Q ss_pred eEEEEccChh---HHHhhhhcccccccCCCcccceeEeecCCCcc--cc--------cccceee--cccccccHHHHhcc
Q psy16953 204 KAIVWGMQTR---AVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKL--KF--------YWGHKEV--LIPVYKKMEDAMSK 268 (806)
Q Consensus 204 ~v~V~G~~~r---~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~--~~--------~~g~~~i--~~p~y~sv~daip~ 268 (806)
+|.|+|.+.- ...+|.+.|+ .|+-++.+... .+ +.....+ ++.+..++++++ +
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~-----------~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCR-----------EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-N 84 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEE-----------EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-T
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-----------EEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHH-c
Confidence 7999998742 3567777776 45555543100 00 0000001 134456777743 4
Q ss_pred CCCeeEEEeecCChhhHHHHHHH----hcC---C-CCCEEEEEcCCCCH
Q psy16953 269 NKDADVLVNFASLRSAYDSTIET----LGF---P-QIRSIAIIAEGIPE 309 (806)
Q Consensus 269 ~~Dlavivi~~~~~~~~~~~le~----~~~---~-gvk~~viis~Gf~E 309 (806)
..|+.++ ++|...+.++++. +.. . + ..+|.++.|+..
T Consensus 85 ~aDvVil---av~~~~~~~v~~~~~~gl~~~l~~~~-~ivv~~~~gi~~ 129 (366)
T 1evy_A 85 GAEIILF---VIPTQFLRGFFEKSGGNLIAYAKEKQ-VPVLVCTKGIER 129 (366)
T ss_dssp TCSSEEE---CCCHHHHHHHHHHHCHHHHHHHHHHT-CCEEECCCSCCT
T ss_pred CCCEEEE---CCChHHHHHHHHHhHHHHHHhcCccC-CEEEEECCcCCC
Confidence 5677666 5667778888776 431 1 2 234555557754
No 428
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.08 E-value=1.6e+02 Score=24.62 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
...+++++.. |--..||+++..+++....+..+|+++++.++
T Consensus 16 ~~~v~kai~~-gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~ 57 (82)
T 3v7e_A 16 TKQTVKALKR-GSVKEVVVAKDADPILTSSVVSLAEDQGISVS 57 (82)
T ss_dssp HHHHHHHHTT-TCEEEEEEETTSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHc-CCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4567777774 44457888999999888899999999998775
No 429
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=22.02 E-value=66 Score=32.93 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCc------ch----HHHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVGGV------EE----YEVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eigg~------~d----~~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++|+|++-++-..+ .+ ..+....++. ...||||+..-|.+-.
T Consensus 41 L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (256)
T 3pe8_A 41 FFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVT 105 (256)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEECSEEET
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 55777888889999999998871111 11 1122222222 3789999999888875
No 430
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.00 E-value=3.2e+02 Score=23.46 Aligned_cols=83 Identities=5% Similarity=0.046 Sum_probs=55.6
Q ss_pred CCCCCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHH
Q psy16953 358 YRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAAL 437 (806)
Q Consensus 358 ~~~G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~ 437 (806)
...-+|-+|.-+-.....+...+.+.| +. +.... +..+.++++.+.....+|++-++..+....++++.+
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g--~~-v~~~~-------~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l 82 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLG--AE-VTVHP-------SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIV 82 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTT--CE-EEEES-------SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcC--CE-EEEeC-------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 344579999999999888888888764 42 22222 245778877651345677776664443337788888
Q ss_pred HhcCCCCCEEEEE
Q psy16953 438 KDKRITKPLVAWC 450 (806)
Q Consensus 438 r~~~~~KPVV~lk 450 (806)
++.....|||++-
T Consensus 83 ~~~~~~~~ii~ls 95 (138)
T 2b4a_A 83 KEQTKQPSVLILT 95 (138)
T ss_dssp TTSSSCCEEEEEE
T ss_pred HhhCCCCCEEEEE
Confidence 8855678888874
No 431
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=21.88 E-value=62 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.2
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 93 ~~~kPvIAav~G~a~G 108 (258)
T 2pbp_A 93 IVKTPMIAAVNGLALG 108 (258)
T ss_dssp TCCSCEEEEECSEEET
T ss_pred hCCCCEEEEEcCEEEh
Confidence 4789999999887764
No 432
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=21.86 E-value=2.2e+02 Score=31.77 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCCEEEE---eCChhHHHHHHHHHHhcCC--ceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcch-HH
Q psy16953 359 RPGSVAYV---SRSGGMSNELNNIISKATN--GVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE-YE 432 (806)
Q Consensus 359 ~~G~Valv---SQSG~l~~~l~~~~~~~g~--G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d-~~ 432 (806)
..|+..++ +++-..+..+...+.+.|+ |+-.+|. |+. +.-+.|.++|+++.|.. .|+.+- +.
T Consensus 167 aaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~-g~~--------~~~~~L~~~~~v~~I~f---TGS~~~g~~ 234 (486)
T 1t90_A 167 ALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVY-GAH--------DVVNGILEHPEIKAISF---VGSKPVGEY 234 (486)
T ss_dssp HTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECC-CSH--------HHHHHHHHCTTEEEEEE---ESCHHHHHH
T ss_pred HcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEE-CCH--------HHHHHHHhCCCCCEEEE---eCCHHHHHH
Confidence 35665555 2333444556666677775 5555554 422 56678889999999987 456666 66
Q ss_pred HHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC---------CcccCChhhHHHHH
Q psy16953 433 VCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG---------AHVPSSFDTLGDII 503 (806)
Q Consensus 433 f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG---------vi~v~~~~EL~~~~ 503 (806)
+++.+.+ ..|||+.=-.|.++.+. +.. |.-+..-.....+.|..+| +++.++.|++.+.+
T Consensus 235 i~~~aa~--~~~pv~lElGGk~p~iV-------~~d--ADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~~d~f~~~l 303 (486)
T 1t90_A 235 VYKKGSE--NLKRVQSLTGAKNHTIV-------LND--ANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKL 303 (486)
T ss_dssp HHHHHHH--TTCEEEEECCCCEEEEE-------CTT--SCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhc--cCCcEEeccCCCCcEEE-------CCC--CCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCCHHHHHHHH
Confidence 6665533 56998887777766421 111 1111122233556677778 55555566777666
Q ss_pred HHHHHhh
Q psy16953 504 GSVYKDL 510 (806)
Q Consensus 504 ~all~~L 510 (806)
.....++
T Consensus 304 ~~~~~~~ 310 (486)
T 1t90_A 304 QEKVADI 310 (486)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 6655555
No 433
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=21.74 E-value=71 Score=33.83 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=54.2
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecC-CCcccccccceeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTG-DHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp-~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
+..++.|+|++. ...+.+..+|+ +|+-+++ ....+. ..+.+.....++++++ ...|+.++
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-----------~V~~~d~~~~~~~~---~~~~g~~~~~~l~ell-~~aDvVil- 208 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDM-----------DIDYFDTHRASSSD---EASYQATFHDSLDSLL-SVSQFFSL- 208 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-----------EEEEECSSCCCHHH---HHHHTCEECSSHHHHH-HHCSEEEE-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-----------EEEEECCCCcChhh---hhhcCcEEcCCHHHHH-hhCCEEEE-
Confidence 556799999873 34677777776 6777777 532110 0112344445888844 44566555
Q ss_pred eecCChhhHH-----HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 277 NFASLRSAYD-----STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 277 i~~~~~~~~~-----~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.++...... ..++.+. . .+++|-.+--+--+++.|.+..++..+.
T Consensus 209 -~~p~~~~t~~~i~~~~l~~mk-~--gailIn~arg~~vd~~aL~~aL~~g~i~ 258 (320)
T 1gdh_A 209 -NAPSTPETRYFFNKATIKSLP-Q--GAIVVNTARGDLVDNELVVAALEAGRLA 258 (320)
T ss_dssp -CCCCCTTTTTCBSHHHHTTSC-T--TEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred -eccCchHHHhhcCHHHHhhCC-C--CcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 454332222 2333333 2 3344433322223455666666665543
No 434
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=21.61 E-value=59 Score=32.11 Aligned_cols=91 Identities=8% Similarity=-0.081 Sum_probs=48.7
Q ss_pred CceEEEEccCh---hHHHhhhhcccccccCCCcccceeEe-ecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 202 QTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYP-FTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 202 ~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iyp-vnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
..+|.|+|.+. ...+.|.+.|+ .|+- .+++. ++.--=.+..+...+.+..+++ ...|+.++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~-----------~V~~v~~r~~-~~~~~l~~~~g~~~~~~~~~~~-~~aDvVil-- 87 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQI-----------PAIIANSRGP-ASLSSVTDRFGASVKAVELKDA-LQADVVIL-- 87 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTC-----------CEEEECTTCG-GGGHHHHHHHTTTEEECCHHHH-TTSSEEEE--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-----------EEEEEECCCH-HHHHHHHHHhCCCcccChHHHH-hcCCEEEE--
Confidence 35899999652 23667777776 3444 33331 0000000112344444545534 44676555
Q ss_pred ecCChhhHHHHHHHhcCCCCCEEEEEcCCCC
Q psy16953 278 FASLRSAYDSTIETLGFPQIRSIAIIAEGIP 308 (806)
Q Consensus 278 ~~~~~~~~~~~le~~~~~gvk~~viis~Gf~ 308 (806)
++|...+.++++++....=+.++-++.|++
T Consensus 88 -avp~~~~~~v~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 88 -AVPYDSIADIVTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp -ESCGGGHHHHHTTCSCCTTCEEEECCCCBC
T ss_pred -eCChHHHHHHHHHhhccCCCEEEEcCCCCC
Confidence 567788999998875322234555555774
No 435
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=21.58 E-value=77 Score=32.58 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=13.4
Q ss_pred CCCCCEEEEEeCcCcC
Q psy16953 441 RITKPLVAWCIGTCAS 456 (806)
Q Consensus 441 ~~~KPVV~lk~Grs~~ 456 (806)
...||||+..-|.+-.
T Consensus 99 ~~~kPvIAav~G~a~G 114 (267)
T 3r9t_A 99 FIDKPTIAAVNGTALG 114 (267)
T ss_dssp CCSSCEEEEECSEECT
T ss_pred hCCCCEEEEECCEEEh
Confidence 5789999999888764
No 436
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=21.45 E-value=4.5e+02 Score=26.34 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCCCCEEEEEcCCCCH---HHHHHHHHHHHHcCCeEEccCccccc
Q psy16953 284 AYDSTIETLGFPQIRSIAIIAEGIPE---NMTRKLNLLAKEKGVSIIGPATVGGL 335 (806)
Q Consensus 284 ~~~~~le~~~~~gvk~~viis~Gf~E---~~~~~l~~~a~~~giriiGPN~~Gii 335 (806)
.+...++++...|...++|+.+..|. ...+++.+..++ +=.++||..-|..
T Consensus 90 rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~~-~d~VigPa~dGG~ 143 (242)
T 3cgx_A 90 RMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQH-YDAAIGPAFDGGY 143 (242)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTTT-CSEEEEEBTTSSE
T ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhcc-CCeEEEEcCCCCE
Confidence 34445555533577889999988776 445555544444 3488999988855
No 437
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=21.42 E-value=74 Score=34.76 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=42.7
Q ss_pred ccccHHHHhcc-CCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCC-------HHHHHHHHHHHHHcCCeE-Ec
Q psy16953 258 VYKKMEDAMSK-NKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP-------ENMTRKLNLLAKEKGVSI-IG 328 (806)
Q Consensus 258 ~y~sv~daip~-~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~-------E~~~~~l~~~a~~~giri-iG 328 (806)
-+.++.+++.+ .+|+ +|+.+ +......++++|.+.|++.+. +++-.+ -..+.++.+.|++.|+.+ .|
T Consensus 64 d~~~l~~~l~~~~~Dv--Vin~a-g~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g 139 (405)
T 4ina_A 64 SIEELVALINEVKPQI--VLNIA-LPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLG 139 (405)
T ss_dssp CHHHHHHHHHHHCCSE--EEECS-CGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEEC
T ss_pred CHHHHHHHHHhhCCCE--EEECC-CcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEc
Confidence 35567675444 2555 44455 445567788999889988443 333212 135568889999999874 55
Q ss_pred cC
Q psy16953 329 PA 330 (806)
Q Consensus 329 PN 330 (806)
++
T Consensus 140 ~G 141 (405)
T 4ina_A 140 SG 141 (405)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 438
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=21.40 E-value=2.4e+02 Score=31.35 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEccCCcch--HHHHHHHHhc-CCCCCEEEEEeCcCcCcCcccccccccCCcC-CC
Q psy16953 398 YPGTTFMDHILRYQADPEVKMIVLLGEVGGVEE--YEVCAALKDK-RITKPLVAWCIGTCASMFTSEVQFGHAGSCA-NS 473 (806)
Q Consensus 398 ~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d--~~f~~a~r~~-~~~KPVV~lk~Grs~~~~g~~aa~sHtGala-g~ 473 (806)
|++.+ .++++++.+.+ .|.|++-.= |..+ ..+.++++++ .+++|||.. -||.. | ... +.
T Consensus 310 ~pG~~-~~~l~a~~~~g-~~GiVleg~--G~Gn~p~~~~~~l~~a~~~Gi~VV~~--Sqc~~--G---------~V~~~~ 372 (435)
T 2d6f_A 310 YPGIS-PDIIKWHLDEG-YRGIVIEGT--GLGHCPDTLIPVIGEAHDMGVPVAMT--SQCLN--G---------RVNMNV 372 (435)
T ss_dssp CTTCC-HHHHHHHHHTT-CSEEEEEEB--TTTBCCGGGHHHHHHHHHTTCCEEEE--ETTCB--S---------CCCTTS
T ss_pred CCCCC-HHHHHHHHhCC-CCEEEEecC--CCCCcCHHHHHHHHHHHhCCCEEEEe--CCCCC--C---------ccCccc
Confidence 35555 56777776544 787777444 4444 6788888776 477888764 34443 1 111 11
Q ss_pred CcccHHHHHHHHHHcCCcccCChh
Q psy16953 474 DAETAVVKNKSLAQAGAHVPSSFD 497 (806)
Q Consensus 474 ~~~~a~~~~aa~~qaGvi~v~~~~ 497 (806)
+. ....+.++|++...++.
T Consensus 373 Y~-----~g~~l~~~GvI~~~dlt 391 (435)
T 2d6f_A 373 YS-----TGRRLLQAGVIPCDDML 391 (435)
T ss_dssp SH-----HHHHHHHTTCEECTTCC
T ss_pred ch-----hhhHHhhCCEEECCCCC
Confidence 21 24468888999988876
No 439
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=21.24 E-value=1.3e+02 Score=32.49 Aligned_cols=42 Identities=5% Similarity=-0.108 Sum_probs=28.8
Q ss_pred cHHHHhc---cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC
Q psy16953 261 KMEDAMS---KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 261 sv~daip---~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~G 306 (806)
+.++ +| ..+|+++. ++|...-.+..+...++|+|.+||=.++
T Consensus 95 dp~~-i~w~~~~vDvV~e---atg~~~s~e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 95 DPAE-IPWGASGAQIVCE---STGVFTTEEKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp CGGG-CCHHHHTCCEEEE---CSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred ChHH-CCcccCCCCEEEE---CCCchhhHHHHHHHHHcCCcEEEEeCCC
Confidence 4555 44 45676555 7787777777778777899887765544
No 440
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.16 E-value=1.4e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 285 YDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 285 ~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
...+++++....++ .||+++.-|+....++..+|+++++.++
T Consensus 20 ~~~v~kai~~gka~-lViiA~D~~~~~~~~i~~~c~~~~ip~~ 61 (99)
T 3j21_Z 20 SNETIRLAKTGGAK-LIIVAKNAPKEIKDDIYYYAKLSDIPVY 61 (99)
T ss_dssp HHHHHHHHHHTCCS-EEEEECCCCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCcc-EEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34566666645565 5667888899999999999999999864
No 441
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=21.16 E-value=92 Score=32.07 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCccEEEEEEccCC------c------ch--HHHHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 404 MDHILRYQADPEVKMIVLLGEVGG------V------EE--YEVCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 404 ~D~l~~l~~Dp~Tk~I~ly~Eigg------~------~d--~~f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
.+.++.+.+| ++|+|++-++-+. + .+ +.+.+.+++. ...||||+..-|.+-.
T Consensus 54 ~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 120 (264)
T 3he2_A 54 TQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIG 120 (264)
T ss_dssp HHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEET
T ss_pred HHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEc
Confidence 3444555556 7777777665100 0 11 2233333333 3789999999888774
No 442
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.95 E-value=6.1e+02 Score=25.01 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCCEEEEeC-ChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCCcch-HHHHHH
Q psy16953 360 PGSVAYVSR-SGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQA-DPEVKMIVLLGEVGGVEE-YEVCAA 436 (806)
Q Consensus 360 ~G~ValvSQ-SG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~-Dp~Tk~I~ly~Eigg~~d-~~f~~a 436 (806)
.|++++|+- ||++|.++...+.++|. +++-++.+ .-...+..+.+.+ .+..++..+...+....+ .++++.
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA---AVAFCARD---GERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEA 80 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESC---HHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC---HHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHH
Confidence 477888874 78999999999988864 34444443 1223445555555 566677777777333333 445554
Q ss_pred HHhcCCCCCEEEEEeCcCc
Q psy16953 437 LKDKRITKPLVAWCIGTCA 455 (806)
Q Consensus 437 ~r~~~~~KPVV~lk~Grs~ 455 (806)
+.+.--+.=+++..+|...
T Consensus 81 ~~~~~g~id~lvnnAg~~~ 99 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGR 99 (265)
T ss_dssp HHHHHCSCSEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 4432223456777666543
No 443
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=20.93 E-value=99 Score=33.06 Aligned_cols=46 Identities=17% Similarity=0.002 Sum_probs=28.5
Q ss_pred cccccHHHHhccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCC
Q psy16953 257 PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGI 307 (806)
Q Consensus 257 p~y~sv~daip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf 307 (806)
+++.++++ +-+.+|+++. ++|.....+..+.+.+.|++ +|..++-+
T Consensus 66 ~v~~~~e~-l~~~vDvV~~---aTp~~~s~~~a~~~~~aG~k-vV~~sa~~ 111 (340)
T 1b7g_O 66 PVAGTVED-LIKTSDIVVD---TTPNGVGAQYKPIYLQLQRN-AIFQGGEK 111 (340)
T ss_dssp CCCCCHHH-HHHHCSEEEE---CCSTTHHHHHHHHHHHTTCE-EEECTTSC
T ss_pred ccccCHhH-hhcCCCEEEE---CCCCchhHHHHHHHHHcCCe-EEEeCCCC
Confidence 34445555 3335776665 67777777777777778887 45555543
No 444
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=20.93 E-value=1.5e+02 Score=31.62 Aligned_cols=42 Identities=5% Similarity=-0.106 Sum_probs=28.9
Q ss_pred ccHHHHhc---cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC
Q psy16953 260 KKMEDAMS---KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 260 ~sv~daip---~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~G 306 (806)
++.++ +| ..+|+++. ++|...-.+..+.+.++|+|.++ +|..
T Consensus 80 ~d~~~-l~~~~~~vDvV~e---atg~~~~~e~a~~~l~aGak~V~-iSap 124 (335)
T 1u8f_O 80 RDPSK-IKWGDAGAEYVVE---STGVFTTMEKAGAHLQGGAKRVI-ISAP 124 (335)
T ss_dssp SSGGG-CCTTTTTCCEEEE---CSSSCCSHHHHGGGGGGTCSEEE-ESSC
T ss_pred CCHHH-CccccCCCCEEEE---CCCchhhHHHHHHHHhCCCeEEE-eccC
Confidence 35667 65 45676665 77877777777787778998655 4553
No 445
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=20.82 E-value=94 Score=33.08 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCcC
Q psy16953 442 ITKPLVAWCIGTCAS 456 (806)
Q Consensus 442 ~~KPVV~lk~Grs~~ 456 (806)
..||||+..-|.+-.
T Consensus 156 ~~kPvIAaV~G~a~G 170 (333)
T 3njd_A 156 CDKPTVVKIHGYCVA 170 (333)
T ss_dssp SSSCEEEEECSEEET
T ss_pred CCCCEEEEECCEEeH
Confidence 789999999888774
No 446
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=20.77 E-value=1.2e+02 Score=33.31 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=56.1
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccceeEeecCCCcccccccceeecccccccHHHHhccCCCeeEEEe
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVN 277 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlavivi 277 (806)
...++.|+|++. ...+.+..+|+ +|+-.++....... ..+.+...+.+++++ -...|+.++
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~-----------~V~~~d~~~~~~~~--~~~~G~~~~~~l~el-l~~aDvV~l-- 253 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDV-----------HLHYTDRHRLPESV--EKELNLTWHATREDM-YPVCDVVTL-- 253 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-----------EEEEECSSCCCHHH--HHHHTCEECSSHHHH-GGGCSEEEE--
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-----------EEEEEcCCccchhh--HhhcCceecCCHHHH-HhcCCEEEE--
Confidence 455799999873 34678888776 67767665211000 011244556789994 445666555
Q ss_pred ecCChhhHH-----HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 278 FASLRSAYD-----STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 278 ~~~~~~~~~-----~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.++...... ..++.+. -.+++|-++--+--+++.|.+..++..+.
T Consensus 254 ~~Plt~~t~~li~~~~l~~mk---~gailIN~aRG~~vde~aL~~aL~~g~i~ 303 (393)
T 2nac_A 254 NCPLHPETEHMINDETLKLFK---RGAYIVNTARGKLCDRDAVARALESGRLA 303 (393)
T ss_dssp CSCCCTTTTTCBSHHHHTTSC---TTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred ecCCchHHHHHhhHHHHhhCC---CCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence 454322222 3333333 23444433322224566777777765443
No 447
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=20.67 E-value=1.9e+02 Score=32.21 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=58.6
Q ss_pred CCceEEEEccCh--h-HHHhhhhc-ccccccCCCcccceeEeecCCCcc--ccc--ccceee--cccccccHHHHhccCC
Q psy16953 201 EQTKAIVWGMQT--R-AVQSMLDF-DFVCRRSEPSVAAMVYPFTGDHKL--KFY--WGHKEV--LIPVYKKMEDAMSKNK 270 (806)
Q Consensus 201 ~~t~v~V~G~~~--r-~~~~ll~~-gf~~~~~~~~~~g~iypvnp~~~~--~~~--~g~~~i--~~p~y~sv~daip~~~ 270 (806)
+..+|+|+|.++ + .++.|.+. |+ +|+-++.+... ++. .+...+ .+.-+.++.+++. .+
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-----------~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~-~~ 89 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDI-----------NVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA-DN 89 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTE-----------EEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH-TS
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCC-----------eEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc-CC
Confidence 346799999743 2 25666665 43 56666654210 000 011111 1222345666443 46
Q ss_pred CeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCeEE
Q psy16953 271 DADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSII 327 (806)
Q Consensus 271 Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~girii 327 (806)
|+.| + +.|......+.++|.+.|+..+ .. .-+.+ ...++.+.|++.|++++
T Consensus 90 DvVI--n-~tp~~~~~~v~~a~l~~g~~vv-d~-~~~~p-~~~~Ll~~Ak~aGv~~i 140 (467)
T 2axq_A 90 DVVI--S-LIPYTFHPNVVKSAIRTKTDVV-TS-SYISP-ALRELEPEIVKAGITVM 140 (467)
T ss_dssp SEEE--E-CSCGGGHHHHHHHHHHHTCEEE-EC-SCCCH-HHHHHHHHHHHHTCEEE
T ss_pred CEEE--E-CCchhhhHHHHHHHHhcCCEEE-Ee-ecCCH-HHHHHHHHHHHcCCEEE
Confidence 6544 4 4455555567777776776433 32 23343 45778889999998765
No 448
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=20.58 E-value=1e+02 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEccC------------Cc-----ch-H--H----HHHHHHhc-CCCCCEEEEEeCcCcC
Q psy16953 403 FMDHILRYQADPEVKMIVLLGEVG------------GV-----EE-Y--E----VCAALKDK-RITKPLVAWCIGTCAS 456 (806)
Q Consensus 403 ~~D~l~~l~~Dp~Tk~I~ly~Eig------------g~-----~d-~--~----f~~a~r~~-~~~KPVV~lk~Grs~~ 456 (806)
+.+.++.+.+||++++|++-++-. .. .+ . . +.+..++. ...||||+..-|.+-.
T Consensus 35 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 113 (269)
T 1nzy_A 35 VTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAG 113 (269)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 345666677788888888877510 00 11 1 2 22223332 3789999999888764
No 449
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=20.53 E-value=3.3e+02 Score=30.13 Aligned_cols=65 Identities=8% Similarity=0.106 Sum_probs=39.5
Q ss_pred ccccccHHHHhccCCCeeEEEeecC-Chh---------hHHHHHHHhcC-CCCCEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy16953 256 IPVYKKMEDAMSKNKDADVLVNFAS-LRS---------AYDSTIETLGF-PQIRSIAIIAEGIPENMTRKLNLLAKEKG 323 (806)
Q Consensus 256 ~p~y~sv~daip~~~Dlavivi~~~-~~~---------~~~~~le~~~~-~gvk~~viis~Gf~E~~~~~l~~~a~~~g 323 (806)
+.+-.++++++. ..|+.++ +++ |.. .+.++++.+.. ..-..+||..|+++....+++.+..++.+
T Consensus 72 l~~ttd~~ea~~-~aDvvii--~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~ 147 (446)
T 4a7p_A 72 LSFTTDLAEGVK-DADAVFI--AVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVA 147 (446)
T ss_dssp EEEESCHHHHHT-TCSEEEE--CCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHS
T ss_pred EEEECCHHHHHh-cCCEEEE--EcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhC
Confidence 345567777443 4565555 443 321 47777776642 22345777888998877777777777653
No 450
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=20.48 E-value=1.4e+02 Score=31.97 Aligned_cols=42 Identities=7% Similarity=-0.046 Sum_probs=28.0
Q ss_pred cHHHHhc---cCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCC
Q psy16953 261 KMEDAMS---KNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEG 306 (806)
Q Consensus 261 sv~daip---~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~G 306 (806)
+.++ +| ..+|+++. ++|.....+..+++.++|+|.+||=.++
T Consensus 83 dp~~-l~w~~~~vDvV~e---aTg~~~~~e~a~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 83 NPDE-IPWAEAGAEYVVE---STGVFTDKEKAAAHLKGGAKKVVISAPS 127 (337)
T ss_dssp CGGG-CCHHHHTCSEEEE---CSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred ChHH-ccccccCCCEEEE---CCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence 5666 54 35777666 6777766666777766899877764443
No 451
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=20.36 E-value=1.7e+02 Score=31.07 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=37.7
Q ss_pred hhcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcC
Q psy16953 410 YQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAG 489 (806)
Q Consensus 410 l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaG 489 (806)
+.+|++..+|++... .-...+....+- ..+|+|++=|+-.... ..+....++.++.|
T Consensus 62 ll~~~~~D~V~i~tp--~~~H~~~~~~al--~aGk~Vl~EKPla~~~-------------------~e~~~l~~~a~~~g 118 (364)
T 3e82_A 62 AVQHPDVDLVVIASP--NATHAPLARLAL--NAGKHVVVDKPFTLDM-------------------QEARELIALAEEKQ 118 (364)
T ss_dssp HHTCTTCSEEEECSC--GGGHHHHHHHHH--HTTCEEEECSCSCSSH-------------------HHHHHHHHHHHHTT
T ss_pred HhcCCCCCEEEEeCC--hHHHHHHHHHHH--HCCCcEEEeCCCcCCH-------------------HHHHHHHHHHHHhC
Confidence 345888999887655 222244433322 3679999877532221 22344777888899
Q ss_pred CcccCCh
Q psy16953 490 AHVPSSF 496 (806)
Q Consensus 490 vi~v~~~ 496 (806)
+...-.+
T Consensus 119 ~~~~v~~ 125 (364)
T 3e82_A 119 RLLSVFH 125 (364)
T ss_dssp CCEEECC
T ss_pred CeEEEEe
Confidence 8664443
No 452
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=20.30 E-value=96 Score=33.51 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=55.5
Q ss_pred CCceEEEEccCh---hHHHhhhhcccccccCCCcccce-eEeecCCCcccccccceeecccccccHHHHhccCCCeeEEE
Q psy16953 201 EQTKAIVWGMQT---RAVQSMLDFDFVCRRSEPSVAAM-VYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 201 ~~t~v~V~G~~~---r~~~~ll~~gf~~~~~~~~~~g~-iypvnp~~~~~~~~g~~~i~~p~y~sv~daip~~~Dlaviv 276 (806)
...++.|+|++. ...+.+..+|+ + |+-.++....... ..+.+...+.++++++ ...|+.++
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-----------~~V~~~d~~~~~~~~--~~~~g~~~~~~l~ell-~~aDvV~l- 227 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPFNP-----------KELLYYDYQALPKDA--EEKVGARRVENIEELV-AQADIVTV- 227 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCC-----------SEEEEECSSCCCHHH--HHHTTEEECSSHHHHH-HTCSEEEE-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-----------cEEEEECCCccchhH--HHhcCcEecCCHHHHH-hcCCEEEE-
Confidence 456799999873 34677777775 4 6656654210000 0122334456898844 44566554
Q ss_pred eecCChhhHH-----HHHHHhcCCCCCEEEEEcCCCCHHHHHHHHHHHHHcCCe
Q psy16953 277 NFASLRSAYD-----STIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVS 325 (806)
Q Consensus 277 i~~~~~~~~~-----~~le~~~~~gvk~~viis~Gf~E~~~~~l~~~a~~~gir 325 (806)
.++...... ..++.+. . .+++|-++--+--+++.|.+..++..+.
T Consensus 228 -~~P~t~~t~~li~~~~l~~mk-~--ga~lIn~arG~~vd~~aL~~aL~~g~i~ 277 (364)
T 2j6i_A 228 -NAPLHAGTKGLINKELLSKFK-K--GAWLVNTARGAICVAEDVAAALESGQLR 277 (364)
T ss_dssp -CCCCSTTTTTCBCHHHHTTSC-T--TEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred -CCCCChHHHHHhCHHHHhhCC-C--CCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence 555432222 2334343 2 3344433322224667788877776654
No 453
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.30 E-value=3.7e+02 Score=26.53 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=52.0
Q ss_pred HHHHHHHcCCeeEEEEEec---cccchhhhhhhhhHHHHHHHHhhhhhcccCceEE-EEEcCCCHHHHHHHHHHhcccC-
Q psy16953 81 QSWISERMGKDQVVLITGG---GIANFTNVAATFKGIVTALTEFQSKLIEHKISIF-VRRAGPNYQEGLRIIREVGKTL- 155 (806)
Q Consensus 81 ~~~~~~~~g~~i~~~~i~G---GI~~~~~vA~~~~gii~al~~~~~~~~~~~~~iv-vR~~G~n~~eG~~~l~~~g~~~- 155 (806)
-+++.+.....-|+.++.| |.......-+-.+|+.+++++ ...++.++ +.....+.+++.+.+++.-+..
T Consensus 125 ~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 199 (304)
T 3gbv_A 125 ARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQE-----HHPACNILELNLHADLNIEDSRMLDDFFREHP 199 (304)
T ss_dssp HHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEEESSCSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHh-----hCCCcEEEEeeecCCCHHHHHHHHHHHHHhCC
Confidence 3455555443457777774 443433333345799999998 34444443 3445566666666666543322
Q ss_pred CccEEEeCCcchHHHHHHHHhc
Q psy16953 156 GIPLFVFGPETHMTAIVGMALG 177 (806)
Q Consensus 156 g~~i~~~~~~~~m~~~~~~a~~ 177 (806)
.+...++.+|. ...+++.+.+
T Consensus 200 ~~~ai~~~~d~-a~g~~~al~~ 220 (304)
T 3gbv_A 200 DVKHGITFNSK-VYIIGEYLQQ 220 (304)
T ss_dssp TCCEEEESSSC-THHHHHHHHH
T ss_pred CeEEEEEcCcc-hHHHHHHHHH
Confidence 35566666666 6666665544
No 454
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=20.29 E-value=1.6e+02 Score=30.70 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=49.6
Q ss_pred hcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC
Q psy16953 411 QADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA 490 (806)
Q Consensus 411 ~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv 490 (806)
.+||+..+|++..- .-...+.+..+- ..+|+|++=|+-... ...+....++.++.|+
T Consensus 59 l~~~~~D~V~i~tp--~~~h~~~~~~al--~~gk~v~~EKP~~~~-------------------~~~~~~l~~~a~~~g~ 115 (331)
T 4hkt_A 59 EAAADIDAVVICTP--TDTHADLIERFA--RAGKAIFCEKPIDLD-------------------AERVRACLKVVSDTKA 115 (331)
T ss_dssp HHCTTCCEEEECSC--GGGHHHHHHHHH--HTTCEEEECSCSCSS-------------------HHHHHHHHHHHHHTTC
T ss_pred hcCCCCCEEEEeCC--chhHHHHHHHHH--HcCCcEEEecCCCCC-------------------HHHHHHHHHHHHHcCC
Confidence 44788888877665 222244433332 257999987752211 1233447778899998
Q ss_pred cccCChhhHHHHHHHHHHhhhhCCcc
Q psy16953 491 HVPSSFDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 491 i~v~~~~EL~~~~~all~~L~~~g~i 516 (806)
...-.+..-+.-.-..+++++++|.|
T Consensus 116 ~~~v~~~~r~~p~~~~~~~~i~~g~i 141 (331)
T 4hkt_A 116 KLMVGFNRRFDPHFMAVRKAIDDGRI 141 (331)
T ss_dssp CEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred eEEEcccccCCHHHHHHHHHHHcCCC
Confidence 77766655555555556666666655
No 455
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=20.23 E-value=89 Score=31.34 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=15.1
Q ss_pred eEEEEccChhH----HHhhhhccc
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf 223 (806)
+|+|.|.++.. ++.|++.||
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~ 30 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEY 30 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC
Confidence 79999998765 566666665
No 456
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=20.17 E-value=4.8e+02 Score=25.74 Aligned_cols=89 Identities=8% Similarity=-0.028 Sum_probs=48.3
Q ss_pred ceEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceee--cccccccHHHHhccCCCeeEEE
Q psy16953 203 TKAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEV--LIPVYKKMEDAMSKNKDADVLV 276 (806)
Q Consensus 203 t~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i--~~p~y~sv~daip~~~Dlaviv 276 (806)
.+|+|-|.++.. .+.|++.|+ .|+-...+......-+...+ .+.-..++.++ -+.+|+ +|
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G~-----------~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~--vi 69 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMAE-----------ILRLADLSPLDPAGPNEECVQCDLADANAVNAM-VAGCDG--IV 69 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGEE-----------EEEEEESSCCCCCCTTEEEEECCTTCHHHHHHH-HTTCSE--EE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----------EEEEEecCCccccCCCCEEEEcCCCCHHHHHHH-HcCCCE--EE
Confidence 468899988654 667777775 33333222100000001111 26666777774 345654 44
Q ss_pred eecCC--hhh-----------HHHHHHHhcCCCCCEEEEEcC
Q psy16953 277 NFASL--RSA-----------YDSTIETLGFPQIRSIAIIAE 305 (806)
Q Consensus 277 i~~~~--~~~-----------~~~~le~~~~~gvk~~viis~ 305 (806)
+.+.. ... ...++++|.+.+++.+|.+|+
T Consensus 70 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 70 HLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp ECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 44321 111 224677887788999998886
No 457
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.15 E-value=3.5e+02 Score=23.19 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=72.2
Q ss_pred CCEEEEeCChhHHHHHHHHHHhcCCceeEEEeecCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCcchHHHHHHHHh-
Q psy16953 361 GSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKD- 439 (806)
Q Consensus 361 G~ValvSQSG~l~~~l~~~~~~~g~G~s~~vs~Gn~~~~d~~~~D~l~~l~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~- 439 (806)
-+|-+|..+......+...+.+.|. . +.... +..+.++.+.+.+ ..+|++=.+..+..-.++++.+++
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~--~-v~~~~-------~~~~a~~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGF--D-SDMVH-------SAAQALEQVARRP-YAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC--E-EEEEC-------SHHHHHHHHHHSC-CSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCC--e-EEEEC-------CHHHHHHHHHhCC-CCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4699999999998888888887554 3 22222 3457777776544 567777665444444788999988
Q ss_pred -cCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC----cccCChhhHHHHHHHHHHhh
Q psy16953 440 -KRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA----HVPSSFDTLGDIIGSVYKDL 510 (806)
Q Consensus 440 -~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv----i~v~~~~EL~~~~~all~~L 510 (806)
.....|||++-...... . ....+.++|+ ..+-+.++|...++.++++-
T Consensus 76 ~~~~~~~ii~~s~~~~~~----~-------------------~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREG----E-------------------LEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp GGGTTCEEEEECTTHHHH----H-------------------HHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChH----H-------------------HHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 44678888873211110 0 0001122332 34568889988888887665
No 458
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=20.07 E-value=1.5e+02 Score=31.99 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred eEEEEccChhH----HHhhhhcccccccCCCcccceeEeecCCCcccccccceeeccccc--------------ccHHHH
Q psy16953 204 KAIVWGMQTRA----VQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVY--------------KKMEDA 265 (806)
Q Consensus 204 ~v~V~G~~~r~----~~~ll~~gf~~~~~~~~~~g~iypvnp~~~~~~~~g~~~i~~p~y--------------~sv~da 265 (806)
+|.|+|++|.. ++-|.++. .-+|..+... ...|.+.. .+.++
T Consensus 15 ~V~IvGAtG~vG~ellrlL~~hP----------~~el~~l~S~---------~~aG~~~~~~~p~~~~~l~~~~~~~~~- 74 (351)
T 1vkn_A 15 RAGIIGATGYTGLELVRLLKNHP----------EAKITYLSSR---------TYAGKKLEEIFPSTLENSILSEFDPEK- 74 (351)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCT----------TEEEEEEECS---------TTTTSBHHHHCGGGCCCCBCBCCCHHH-
T ss_pred EEEEECCCCHHHHHHHHHHHcCC----------CcEEEEEeCc---------ccccCChHHhChhhccCceEEeCCHHH-
Q ss_pred hccCCCeeEEEeecCChhhHHHHHHHhcCCCCCEEEEEcCCCCHHHHH-----------------------HHHHHHHHc
Q psy16953 266 MSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTR-----------------------KLNLLAKEK 322 (806)
Q Consensus 266 ip~~~Dlavivi~~~~~~~~~~~le~~~~~gvk~~viis~Gf~E~~~~-----------------------~l~~~a~~~ 322 (806)
+...+|+++. +.|...-.+....+ +|++ +|=.|+.|.=...+ |+.+-.-+.
T Consensus 75 ~~~~~Dvvf~---alp~~~s~~~~~~~--~g~~-VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~~ 148 (351)
T 1vkn_A 75 VSKNCDVLFT---ALPAGASYDLVREL--KGVK-IIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKN 148 (351)
T ss_dssp HHHHCSEEEE---CCSTTHHHHHHTTC--CSCE-EEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTT
T ss_pred hhcCCCEEEE---CCCcHHHHHHHHHh--CCCE-EEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhcc
Q ss_pred CCeEEccCc
Q psy16953 323 GVSIIGPAT 331 (806)
Q Consensus 323 giriiGPN~ 331 (806)
.-.|--|||
T Consensus 149 a~iIANPgC 157 (351)
T 1vkn_A 149 AQVVGNPGC 157 (351)
T ss_dssp CSEEECCCH
T ss_pred CCEEeCCCh
No 459
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=20.04 E-value=3.5e+02 Score=28.50 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=44.8
Q ss_pred hcCCCccEEEEEEccCCcchHHHHHHHHhcCCCCCEEEEEeCcCcCcCcccccccccCCcCCCCcccHHHHHHHHHHcCC
Q psy16953 411 QADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGA 490 (806)
Q Consensus 411 ~~Dp~Tk~I~ly~Eigg~~d~~f~~a~r~~~~~KPVV~lk~Grs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~qaGv 490 (806)
.+|++..+|++... .-...+.+..+- ..+|+|++=|+-.... ..+....++.++.|+
T Consensus 61 l~~~~~D~V~i~tp--~~~h~~~~~~al--~aGkhVl~EKP~a~~~-------------------~ea~~l~~~a~~~g~ 117 (359)
T 3e18_A 61 LADEKVDAVLIATP--NDSHKELAISAL--EAGKHVVCEKPVTMTS-------------------EDLLAIMDVAKRVNK 117 (359)
T ss_dssp HHCTTCCEEEECSC--GGGHHHHHHHHH--HTTCEEEEESSCCSSH-------------------HHHHHHHHHHHHHTC
T ss_pred hcCCCCCEEEEcCC--cHHHHHHHHHHH--HCCCCEEeeCCCcCCH-------------------HHHHHHHHHHHHhCC
Confidence 34788888877655 222244443332 3679999877522211 223446778888898
Q ss_pred cccCChhhHHHHHHHHHHhhhhCCcc
Q psy16953 491 HVPSSFDTLGDIIGSVYKDLVSRGDI 516 (806)
Q Consensus 491 i~v~~~~EL~~~~~all~~L~~~g~i 516 (806)
...-.+..-++-.-..+++++++|.|
T Consensus 118 ~~~v~~~~r~~p~~~~~k~~i~~g~i 143 (359)
T 3e18_A 118 HFMVHQNRRWDEDFLIIKEMFEQKTI 143 (359)
T ss_dssp CEEEECGGGGCHHHHHHHHHHHHTTT
T ss_pred eEEEEeeeccCHHHHHHHHHHHcCCC
Confidence 66544333332222334444444444
No 460
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=20.01 E-value=2.8e+02 Score=28.23 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=16.4
Q ss_pred CceEEEEccChhH----HHhhhhccc
Q psy16953 202 QTKAIVWGMQTRA----VQSMLDFDF 223 (806)
Q Consensus 202 ~t~v~V~G~~~r~----~~~ll~~gf 223 (806)
+.+|+|.|.++-. ++.|++.|+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~ 28 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY 28 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 3579999998764 667777776
Done!