RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16953
(806 letters)
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 614 bits (1586), Expect = 0.0
Identities = 315/493 (63%), Positives = 367/493 (74%), Gaps = 53/493 (10%)
Query: 91 DQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIRE 150
D +LI GG IANFTNVAATFKGIV A+ ++Q L EH+++IFVRR GPNYQEGLR++ E
Sbjct: 334 DGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGE 393
Query: 151 VGKTLGIPLFVFGPETHMTAIVGMALGKKEIPSETSADGATANFLLPGGQ---------- 200
VGKT GIP+ VFG ETHMTAIVGMALG + IP++ TANFLL
Sbjct: 394 VGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRT 453
Query: 201 -----------------------------------------EQTKAIVWGMQTRAVQSML 219
TKAIVWGMQTRAVQ ML
Sbjct: 454 ASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGML 513
Query: 220 DFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFA 279
DFD+VC R EPSVAAMVYPFTGDHK KFYWGHKE+LIPV+K M DAM K+ + DVL+NFA
Sbjct: 514 DFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINFA 573
Query: 280 SLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGC 339
SLRSAYDST+ET+ + QIR+IAIIAEGIPE +TRKL A +KGV+IIGPATVGG+KPGC
Sbjct: 574 SLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGC 633
Query: 340 FKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYP 399
FKIGNTGGM+DNIL SKLYRPGSVAYVSRSGGMSNELNNIIS+ T+GVYEGVAIGGDRYP
Sbjct: 634 FKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYP 693
Query: 400 GTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFT 459
G+TFMDH+LRYQ P VKMIV+LGE+GG EEY++C +K+ R+TKP+V WCIGTCA+MF+
Sbjct: 694 GSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFS 753
Query: 460 SEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYKDLVSRGDIVPQ 519
SEVQFGHAG+CAN +ETAV KN++L +AG VP SFD LG+II SVY+DLV+ G IVP
Sbjct: 754 SEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVANGVIVPA 813
Query: 520 PELPPPTVPMDYS 532
E+P +
Sbjct: 814 QEVPAA--LEHHH 824
Score = 130 bits (329), Expect = 2e-31
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 MSAKAISEATGKDIINRNLDPNTAAA-KCRFAAVKEETSWAELVRNEPWLESSKLVAKPD 59
MSAKAISE TGK+++ + + +A + ++A V +T WA L+++ PWL S LV KPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 60 QLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANF 104
QLIKRRGKLGL+ VN G +SW+ R+G++ V G + NF
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_B*
Length = 334
Score = 479 bits (1234), Expect = e-164
Identities = 247/326 (75%), Positives = 285/326 (87%)
Query: 201 EQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYK 260
TKAIVWGMQTRAVQ MLDFD+VC R EPSVAAMVYPFTGDHK KFYWGHKE+LIPV+K
Sbjct: 9 RHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFK 68
Query: 261 KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAK 320
M DAM K+ + DVL+NFASLRSAYDST+ET+ + QIR+IAIIAEGIPE +TRKL A
Sbjct: 69 NMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKAD 128
Query: 321 EKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNII 380
+KGV+IIGPATVGG+KPGCFKIGNTGGM+DNIL SKLYRPGSVAYVSRSGGMSNELNNII
Sbjct: 129 QKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNII 188
Query: 381 SKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDK 440
S+ T+GVYEGVAIGGDRYPG+TFMDH+LRYQ P VKMIV+LGE+GG EEY++C +K+
Sbjct: 189 SRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEG 248
Query: 441 RITKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLG 500
R+TKP+V WCIGTCA+MF+SEVQFGHAG+CAN +ETAV KN++L +AG VP SFD LG
Sbjct: 249 RLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELG 308
Query: 501 DIIGSVYKDLVSRGDIVPQPELPPPT 526
+II SVY+DLV+ G IVP E+PPPT
Sbjct: 309 EIIQSVYEDLVANGVIVPAQEVPPPT 334
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 145 bits (367), Expect = 1e-37
Identities = 67/115 (58%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Query: 72 KVNTDFKGAQSWISERMGKDQ----VVLITGGGIANFTNVAATFKGIVTALTEFQSKLIE 127
+ K I M +++ +LI GG IANFTNVAATFKGIV A+ ++Q L E
Sbjct: 315 QTYDYAK----TILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKE 370
Query: 128 HKISIFVRRAGPNYQEGLRIIREVGKTLGIPLFVFGPETHMTAIVGMALGKKEIP 182
H+++IFVRR GPNYQEGLR++ EVGKT GIP+ VFG ETHMTAIVGMALG + IP
Sbjct: 371 HEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIP 425
Score = 95.0 bits (237), Expect = 9e-21
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 MSAKAISEATGKDIINRNLDPNTA-AAKCRFAAVKEETSWAELVRNEPWLESSKLVAKPD 59
MSAKAISE TGK+++ + + +A + ++A V +T WA L+++ PWL S LV KPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 60 QLIKRRGKLGLIKVNTDFKGAQSWISERMGKDQVVLITGGGIANF 104
QLIKRRGKLGL+ VN G +SW+ R+G++ V G + NF
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase,
structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Length = 297
Score = 130 bits (330), Expect = 8e-34
Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 20/257 (7%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PVY +++A++++ + + + F A D+ E + IR + +I EGIP + T +
Sbjct: 56 VPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVD-AGIRLVVVITEGIPVHDTMRF 114
Query: 316 NLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375
A++KG +IIGP G + PG K+G I+ +++ G VA VSRSG ++ E
Sbjct: 115 VNYARQKGATIIGPNCPGAITPGQAKVG--------IMPGHIFKEGGVAVVSRSGTLTYE 166
Query: 376 LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCA 435
++ ++++ G + IGGD G +F + + +Q DP+ + +VL+GE+GG E
Sbjct: 167 ISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAE 226
Query: 436 ALKDKRITKPLVAWCIGTCA----SMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491
+K TKP++A+ G A M GHAG+ T K K+L +AG
Sbjct: 227 MIKKGEFTKPVIAYIAGRTAPPEKRM-------GHAGAIIMMGTGTYEGKVKALREAGVE 279
Query: 492 VPSSFDTLGDIIGSVYK 508
V + + +++ +
Sbjct: 280 VAETPFEVPELVRKALR 296
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8
c.23.4.1
Length = 288
Score = 124 bits (313), Expect = 1e-31
Identities = 76/255 (29%), Positives = 121/255 (47%), Gaps = 22/255 (8%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PVY +++A+ + + D + F +A D+ +E I I +I EGIP +
Sbjct: 50 VPVYDTVKEAV-AHHEVDASIIFVPAPAAADAALEAA-HAGIPLIVLITEGIPTLDMVRA 107
Query: 316 NLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375
K G +IG G + KIG I+ +++ G V +SRSG ++ E
Sbjct: 108 VEEIKALGSRLIGGNCPGIISAEETKIG--------IMPGHVFKRGRVGIISRSGTLTYE 159
Query: 376 LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCA 435
+S+A G V IGGD GTTF D + + DPE + +VL+GE+GG +E E A
Sbjct: 160 AAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAA 219
Query: 436 ALKDKRITKPLVAWCIGTCA----SMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491
+KD + KP+V + G A M GHAG+ + T K ++ A+AG
Sbjct: 220 WVKDH-MKKPVVGFIGGRSAPKGKRM-------GHAGAIIMGNVGTPESKLRAFAEAGIP 271
Query: 492 VPSSFDTLGDIIGSV 506
V + D + +++
Sbjct: 272 VADTIDEIVELVKKA 286
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1
PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A*
1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Length = 288
Score = 123 bits (312), Expect = 1e-31
Identities = 81/257 (31%), Positives = 121/257 (47%), Gaps = 22/257 (8%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PV+ + +A+ A V + DS +E + I+ I I EGIP +
Sbjct: 50 LPVFNTVREAV-AATGATASVIYVPAPFCKDSILEAID-AGIKLIITITEGIPTLDMLTV 107
Query: 316 NLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375
+ E GV +IGP T G + PG KIG I +++PG V VSRSG ++ E
Sbjct: 108 KVKLDEAGVRMIGPNTPGVITPGECKIG--------IQPGHIHKPGKVGIVSRSGTLTYE 159
Query: 376 LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCA 435
+ G V IGGD PG+ F+D + ++ DP+ + IV++GE+GG E E A
Sbjct: 160 AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAA 219
Query: 436 ALKDKRITKPLVAWCIGTCA----SMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491
+K+ +TKP+V + G A M GHAG+ TA K +L AG
Sbjct: 220 YIKEH-VTKPVVGYIAGVTAPKGKRM-------GHAGAIIAGGKGTADEKFAALEAAGVK 271
Query: 492 VPSSFDTLGDIIGSVYK 508
S +G+ + +V K
Sbjct: 272 TVRSLADIGEALKTVLK 288
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial;
active site phosphohistidine residue; HET: NEP GTP;
2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A*
2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Length = 305
Score = 120 bits (304), Expect = 3e-30
Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 25/262 (9%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIP-ENMTRK 314
+PV+ +++A + A V + A + E + ++ + I EGIP ++M R
Sbjct: 57 LPVFNTVKEAK-EQTGATASVIYVPPPFAAAAINEAID-AEVPLVVCITEGIPQQDMVRV 114
Query: 315 LNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSN 374
+ L ++ +IGP G + PG KIG I+ +++ G + VSRSG ++
Sbjct: 115 KHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIHKKGRIGIVSRSGTLTY 166
Query: 375 ELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVC 434
E + ++ G V IGGD + GT F D + + DP + I+L+GE+GG E
Sbjct: 167 EAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAA 226
Query: 435 AALKD---KRITKPLVAWCIGTCA----SMFTSEVQFGHAGSCANSDAETAVVKNKSLAQ 487
LK +KP+V++ G A M GHAG+ A K +L
Sbjct: 227 EFLKQHNSGPKSKPVVSFIAGLTAPPGRRM-------GHAGAIIAGGKGGAKEKITALQS 279
Query: 488 AGAHVPSSFDTLGDIIGSVYKD 509
AG V S LG I ++
Sbjct: 280 AGVVVSMSPAQLGTTIYKEFEK 301
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding
domain, structural genomics, NPPSFA; 1.70A
{Methanocaldococcus jannaschii}
Length = 294
Score = 120 bits (303), Expect = 3e-30
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 23/257 (8%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PV+ +++A+ K DA+ V F A D+ E + I I +I E IP + T +
Sbjct: 56 VPVFDTVKEAV-KETDANASVIFVPAPFAKDAVFEAID-AGIELIVVITEHIPVHDTMEF 113
Query: 316 NLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNE 375
A++ GV IIGP T G P K+G I+ ++ + GSV VSRSG ++ E
Sbjct: 114 VNYAEDVGVKIIGPNTPGIASPKVGKLG--------IIPMEVLKEGSVGMVSRSGTLTYE 165
Query: 376 LNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCA 435
+ + I KA GV V IGGD G + + + ++ D E + IV++GE+GG E E A
Sbjct: 166 IAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEE--A 223
Query: 436 ALKDKRITKPLVAWCIGTCA----SMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAH 491
A +++ KP++ + G A M GHAG+ TA K K+L +AGA+
Sbjct: 224 AKFIEKMKKPVIGYIAGQSAPEGKRM-------GHAGAIVEKGKGTAESKMKALEEAGAY 276
Query: 492 VPSSFDTLGDIIGSVYK 508
V + + ++ +
Sbjct: 277 VAKNISDIPKLLAGILG 293
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU
genomics, protein structure initiative; 2.07A
{Escherichia coli}
Length = 480
Score = 102 bits (257), Expect = 3e-23
Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 24/248 (9%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETL--GFPQIRSIAIIAEGIPENMTR 313
+ ++ + A K DA++ + + A + + L + + ++ +
Sbjct: 21 LTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLN----VMMFSDNVTLEDEI 76
Query: 314 KLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMS 373
+L A+EKG+ ++GP + G T N+ G++ + SG
Sbjct: 77 QLKTRAREKGLLVMGPDCGTSMIAG------TPLAFANV-----MPEGNIGVIGASGTGI 125
Query: 374 NELNNIISKATNGVYEGVAIGG----DRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVE 429
EL + I+ A G+ + +GG G + + + AD + +++ + +
Sbjct: 126 QELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEA 185
Query: 430 EYEVCAALKDKRITKPLVAWCIGTCASMFTSEVQFGHAGSCANS-DAETAVVKNKSLAQA 488
K KP VA +G ++ + A S + + + + A
Sbjct: 186 VRLKIVNAM-KATGKPTVALFLGYTPAV-ARDENVWFASSLDEAARLACLLSRVTARRNA 243
Query: 489 GAHVPSSF 496
A V S F
Sbjct: 244 IAPVSSGF 251
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 70.2 bits (173), Expect = 7e-13
Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 47/209 (22%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
+ SL++ A+H S T VC+ D+ S++ + + T+ G GGA
Sbjct: 170 QMAIDCMNASLILYAEHEFNAS----TFAARVCSATLSDIYSAVTAAIATLRGPLHGGA- 224
Query: 646 NDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---VL 701
N+AA+ Y + + +LIMG GH V + D R IIK + +
Sbjct: 225 NEAAMDLIMLYKTPSEAIAGIKRKLANKELIMGFGHAVYR---ERDPRNAIIKSWAQKLA 281
Query: 702 QNFPTTPLLNYALEVEKITTSKKPNLILNVD---GVIAVAFVDLLRHSGSFTREEAQEYV 758
N L + + +E +K L N+D Y
Sbjct: 282 PNAADGYLFDISDAIENTMQDEK-KLFPNLDFYSATA---------------------YH 319
Query: 759 EMGAING-----LFVLGRSIGFIGHYMDQ 782
+ I +FV+ R G+ H +Q
Sbjct: 320 FLN-IPTKLFTPIFVMSRVTGWCAHIFEQ 347
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 68.3 bits (168), Expect = 3e-12
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 42/207 (20%)
Query: 589 PPYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGA 644
+ LE + ++ + S T +V A DL S +V L + G GGA
Sbjct: 159 RNEKIRLLESAFILLMEQDINAS----TFAALVIASTLSDLYSCIVGALGALKGPLHGGA 214
Query: 645 LNDAAIQFSAAY-DAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEFVLQ 702
++ + EFV + K+ + IMG GHRV K D R +K + +
Sbjct: 215 -SEKVPPMLEEIGSEDRVE-EFVQKCLKEKRKIMGFGHRVYK---TYDPRAVFLKRVLQE 269
Query: 703 NFPTTPLLNYALEVEKITTSKKP-NLILNVD---GVI--AVAF-VDLLRHSGSFTREEAQ 755
+FP + L A ++E+ S K N+ NVD V+ + F ++ FT
Sbjct: 270 HFPDSKLFRIASKLEEYIVSNKIKNIYPNVDLYSSVLFEELGFPRNM------FT----- 318
Query: 756 EYVEMGAINGLFVLGRSIGFIGHYMDQ 782
LF R +G+ H ++
Sbjct: 319 ---------ALFATARVVGWTAHVIEY 336
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 66.9 bits (164), Expect = 1e-11
Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 62/221 (28%)
Query: 590 PYVCKFLEMSLMVTADH-GPAVSGAHNTIVCARAGKDLVSSLVSG--------------- 633
P + + + L + +DH G VS AH + + A D S +
Sbjct: 220 PQFTELMRLYLTIHSDHEGGNVS-AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQE 278
Query: 634 ----LLTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINN 688
L + G +D + +++ G+++ G GH V +
Sbjct: 279 VLLWLSQLQKDLGADASDEKL------------RDYIWNTLNSGRVVPGYGHAVLR---K 323
Query: 689 PDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTS------KKPNLILNVD---GVIAVAF 739
D R +EF L++ P+ P+ ++ KI + K N NVD GV+ +
Sbjct: 324 TDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYY 383
Query: 740 VDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYM 780
+ +T LF + R++G + +
Sbjct: 384 G--MTEMNYYT--------------VLFGVSRALGVLAQLI 408
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 66.4 bits (163), Expect = 1e-11
Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 43/207 (20%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
K + +SL++ A+H S T V A G D+ S+++ + + G + GGA
Sbjct: 199 QSWEKAMHISLVLYAEHEFNAS----TFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGA- 253
Query: 646 NDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---VL 701
N+ +++ Y+ + + + ++++G GH V D R ++IK +
Sbjct: 254 NEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYT---IADPRHQVIKRVAKQLS 310
Query: 702 QNFPTTPLLNYALEVEKITTSKKPNLILNVD---GVI--AVAF-VDLLRHSGSFTREEAQ 755
+ + + + A +E + K + N+D V + ++ FT
Sbjct: 311 EEGGSLKMYHIADRLETVMWETK-KMFPNLDWFSAVSYNMMGVPTEM------FT----- 358
Query: 756 EYVEMGAINGLFVLGRSIGFIGHYMDQ 782
LFV+ R G+ H ++Q
Sbjct: 359 ---------PLFVIARVTGWAAHIIEQ 376
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 66.0 bits (162), Expect = 2e-11
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
++ +L++ DH S T +V A D+ SSL + L + G GGA
Sbjct: 167 TDEINAMDKALILYTDHEVPAS----TTAALVAASTLSDMYSSLTAALAALKGPLHGGA- 221
Query: 646 NDAAI-QFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---V 700
+ A QF D + F +++ + +MG GHRV K D R KI K+ +
Sbjct: 222 AEEAFKQFIEIGDPNRVQNWFNDKVVNQKNRLMGFGHRVYK---TYDPRAKIFKKLALTL 278
Query: 701 LQNF-PTTPLLNYALEVEKITTS--KKPNLILNVD---GVI--AVAF-VDLLRHSGSFTR 751
++ A ++E++ + N D G++ A+ F V + FT
Sbjct: 279 IERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYM------FT- 331
Query: 752 EEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
LF L R++G++ H ++ + L R
Sbjct: 332 -------------ALFALSRTLGWLAHIIEYVEEQHRLIR 358
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 66.1 bits (162), Expect = 2e-11
Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 43/207 (20%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
V E S+++ A+HG S T V D+ S++ + + G GGA
Sbjct: 212 TAVVSAFEQSMILYAEHGFNAS----TFAARVVTSTQSDIYSAVTGAIGALKGRLHGGA- 266
Query: 646 NDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---VL 701
N+A + E++ + + IMG GHRV + + D RV +K V
Sbjct: 267 NEAVMHDMIEIGDPANAREWLRAKLARKEKIMGFGHRVYR---HGDSRVPTMKRALERVG 323
Query: 702 QNFPTTPLLNYALEVEKITTSKKPNLILNVD---GVI--AVAF-VDLLRHSGSFTREEAQ 755
L+ + S ++ N+D G + F + FT
Sbjct: 324 TVRDGQRWLDIYQVLAAEMASAT-GILPNLDFPTGPAYYLMGFDIAS------FT----- 371
Query: 756 EYVEMGAINGLFVLGRSIGFIGHYMDQ 782
+FV+ R G+ H M+Q
Sbjct: 372 ---------PIFVMSRITGWTAHIMEQ 389
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 65.0 bits (159), Expect = 3e-11
Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 43/223 (19%)
Query: 587 QLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
++ P + + ++ L++ ADH S + +G + + + +G+ ++ G GGA
Sbjct: 210 EVNPILERAMDRILILHADHEQNASTS-TVRTAGSSGANPFACIAAGIASLWGPAHGGA- 267
Query: 646 NDAAIQFSAAYDAGLIPMEFVNEMRKK--GKLIMGIGHRV-KSINNPDMRVKIIKEFVLQ 702
N+AA++ EFV + K +MG GHRV K N D R +++E +
Sbjct: 268 NEAALKMLEEIGKKENIPEFVRRAKDKNDSFRLMGFGHRVYK---NYDPRATVMRETCHE 324
Query: 703 NFPTT----PLLNYALEVEKITTS----KKPNLILNVD---GVI--AVAF-VDLLRHSGS 748
LL A+E+E I + + L NVD G+I A+ +
Sbjct: 325 VLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSM------ 378
Query: 749 FTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
FT +F + R++G+I H+ + + R
Sbjct: 379 FT--------------VIFAMARTVGWIAHWSEMHSDGMKIAR 407
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 64.5 bits (158), Expect = 4e-11
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 53/227 (23%)
Query: 579 LSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLL 635
L + F + P V + +S+++ A+H S T V DL S++ +
Sbjct: 160 LWMT-FGEEAAPEVVEAFNVSMILYAEHSFNAS----TFTARVITSTLADLHSAVTGAIG 214
Query: 636 TI-GDRFGGALNDAA------IQFSAAYDAGLIPM---EFVNEMRKKGKLIMGIGHRV-K 684
+ G GGA N+A I ++ + + K +MG GHRV K
Sbjct: 215 ALKGPLHGGA-NEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYK 273
Query: 685 SINNPDMRVKIIKEF---VLQNFPTTPLLNYALEVEKITTSKKPNLILNVD---GVI--A 736
N D RV +K +++++ +L +E K + N+D G
Sbjct: 274 ---NGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAK-QIKPNLDYPAGPTYNL 329
Query: 737 VAF-VDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
+ F ++ FT LF+ R G+ H M+Q
Sbjct: 330 MGFDTEM------FT--------------PLFIAARITGWTAHIMEQ 356
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 64.1 bits (157), Expect = 6e-11
Identities = 53/221 (23%), Positives = 83/221 (37%), Gaps = 48/221 (21%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
K ++ SL++ DH S T +V + D+ S +V+ L + G GGA
Sbjct: 168 QEEIKAMDASLILYTDHEVPAS----TTAALVASSTLSDMYSCIVAALAALKGPLHGGA- 222
Query: 646 NDAAI-QFSAAYDAGLIPMEFVNEMRKKGK-LIMGIGHRV-KSINNPDMRVKIIKEF--- 699
+ A QF ++ E KGK +MG GHRV K D R KI K
Sbjct: 223 AEEAFKQFVEIGSVENAD-KWFEEKIIKGKSRLMGFGHRVYK---TYDPRAKIFKTLAKS 278
Query: 700 VLQNF-PTTPLLNYALEVEKITTS--KKPNLILNVD---GVI--AVAF-VDLLRHSGSFT 750
+ A +EK+ ++ N D G++ A+ F + + FT
Sbjct: 279 FAEKNENVKKYYEIAERIEKLGVDTFGSKHIYPNTDFYSGIVFYALGFPIYM------FT 332
Query: 751 REEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
LF L R +G++ H ++ + L R
Sbjct: 333 --------------SLFALSRVLGWLAHIIEYVEEQHRLIR 359
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 64.1 bits (157), Expect = 6e-11
Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 48/222 (21%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
+ +L++ DH S T +V D+ S + + L + G GGA
Sbjct: 172 KEEIDAMNTALILYTDHEVPAS----TTAGLVAVSTLSDMYSGITAALAALKGPLHGGA- 226
Query: 646 NDAAI-QFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---V 700
+AAI QF D ++ F + + K +MG GHRV K D R KI K +
Sbjct: 227 AEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYK---TYDPRAKIFKGIAEKL 283
Query: 701 LQNFP-TTPLLNYALEVEKITT----SKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQ 755
P + A ++E SK + N D + SG
Sbjct: 284 SSKKPEVHKVYEIATKLEDFGIKAFGSKG--IYPNTD------Y-----FSGIV------ 324
Query: 756 EYVEMGAING------LFVLGRSIGFIGHYMDQKRLKQGLYR 791
Y+ +G LF L R G+ H+++ +Q L R
Sbjct: 325 -YMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEEQQRLIR 365
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 63.3 bits (155), Expect = 1e-10
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 49/231 (21%)
Query: 579 LSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLL 635
L + + P + ++ +L++ A+HG S T I DL S++ + +
Sbjct: 158 LYMA-NGVEPSPEQARLMDAALILHAEHGFNAS----TFTAIAAFSTETDLYSAITAAVA 212
Query: 636 TI-GDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRV 693
++ G R GGA N+A ++ E+V E K + IMG+GHRV K D R
Sbjct: 213 SLKGPRHGGA-NEAVMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYK---AFDPRA 268
Query: 694 KIIKEF---VLQNFPTTPLLNYALEVEKITT----SKKPNLILNVD---GVI--AVAF-V 740
++++ V + + VE+ + + NVD GV+ + F +
Sbjct: 269 GVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRG--IYPNVDFYSGVVYSDLGFSL 326
Query: 741 DLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
+ FT +F + R G++GH ++ + L L R
Sbjct: 327 EF------FT--------------PIFAVARISGWVGHILEYQELDNRLLR 357
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 61.0 bits (149), Expect = 5e-10
Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 48/215 (22%)
Query: 584 FQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GD 639
+ P K ++++L++ A+H S T + D S++++G+ + G
Sbjct: 161 HGEEPPKEWEKAMDVALILYAEHEINAS----TLAVMTVGSTLSDYYSAILAGIGALKGP 216
Query: 640 RFGGALNDAAIQFSAAY-DAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIK 697
GGA + AI+ + E+ + ++ + IMG GHRV K D R +I K
Sbjct: 217 IHGGA-VEEAIKQFMEIGSPEKVE-EWFFKALQQKRKIMGAGHRVYK---TYDPRARIFK 271
Query: 698 EFVLQNFPTTPLLNYALEVEKITT----SKKPNLILNVD---GVI--AVAF-VDLLRHSG 747
+ L A +E++ K + +NVD G++ + ++L
Sbjct: 272 K-YASKLGDKKLFEIAERLERLVEEYLSKKG--ISINVDYWSGLVFYGMKIPIEL----- 323
Query: 748 SFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
+T +F +GR G+ H +
Sbjct: 324 -YT--------------TIFAMGRIAGWTAHLAEY 343
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 59.8 bits (146), Expect = 1e-09
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 52/214 (24%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
K ++++L++ DH S T +V A DL SS+V+G+ + G GGA
Sbjct: 164 EIKSKAMDVTLILHIDHEMNAS----TFASLVVASTFSDLYSSIVAGISALKGPLHGGA- 218
Query: 646 NDAAIQFSAAY-DAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEF---V 700
N A++ + +++ + IMG GHRV K D R +I+K++ +
Sbjct: 219 NYEALKMFKEIGSPEKVN-DYILNRLSNKQRIMGFGHRVYK---TYDPRARILKQYAKLL 274
Query: 701 LQNF--PTTPLLNYALEVEKI----TTSKKPNLILNVD---GVI--AVAF-VDLLRHSGS 748
+ L A +VE+I K + NVD ++ ++ F D
Sbjct: 275 AEKEGGEIYTLYQIAEKVEEIGIKYLGPKG--IYPNVDFFSSIVFYSLGFEPDF------ 326
Query: 749 FTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
F +F R +G++ H M+
Sbjct: 327 FP--------------AVFASARVVGWVAHIMEY 346
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 59.1 bits (144), Expect = 2e-09
Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
K LE +++ +HG S T V DLVS++ + L T+ G GGA
Sbjct: 161 EAKKKALETYMILATEHGMNAS----TFSARVTLSTESDLVSAVTAALGTMKGPLHGGA- 215
Query: 646 NDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV-KSINNPDMRVKIIKEFVLQNF 704
A + ++ E +KG+ +MG GHRV K D R + +++ +
Sbjct: 216 PSAVTKMLEDIGEKEHAEAYLKEKLEKGERLMGFGHRVYK---TKDPRAEALRQKAEEVA 272
Query: 705 PTTPLLNYALEVEKITT--------SKKPNLILNVD---GVI--AVAF-VDLLRHSGSFT 750
L+ AL VE +K L NV+ + A+ F +L FT
Sbjct: 273 GNDRDLDLALHVEAEAIRLLEIYKPGRK--LYTNVEFYAAAVMRAIDFDDEL------FT 324
Query: 751 REEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
F R +G+ H ++Q
Sbjct: 325 --------------PTFSASRMVGWCAHVLEQ 342
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 58.8 bits (143), Expect = 3e-09
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 48/219 (21%)
Query: 585 QRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTI-VCARAGKDLVSSLVSGLLTI-GDRFG 642
++ P + + + L++ ADH S + T+ + G + + + +G+ + G G
Sbjct: 216 PYKVNPVLARAMNRILILHADHEQNASTS--TVRLAGSTGANPFACIAAGIAALWGPAHG 273
Query: 643 GALNDAAIQ-FSAAYDAGLIPMEFVNEM--RKKGKLIMGIGHRV-KSINNPDMRVKIIKE 698
GA N+A ++ + IP F+ ++ + G +MG GHRV K N D R KI+++
Sbjct: 274 GA-NEAVLKMLARIGKKENIP-AFIAQVKDKNSGVKLMGFGHRVYK---NFDPRAKIMQQ 328
Query: 699 FVLQNFPTT-----PLLNYALEVEKITTS----KKPNLILNVD---GVI--AVAF-VDLL 743
+ PLL+ A+E+EKI S + L NVD G+I A+ +
Sbjct: 329 TCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSM- 387
Query: 744 RHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
FT LF + R+ G++ + +
Sbjct: 388 -----FT--------------VLFAVARTTGWVSQWKEM 407
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 58.8 bits (143), Expect = 4e-09
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 46/218 (21%)
Query: 585 QRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTI-GDRFGG 643
+ K ++ M+ ADH S + + G +++++G+ + G GG
Sbjct: 213 SYKPDELHIKAMDTIFMLHADHEQNASTS-TVRLSGSTGNSPYAAIIAGITALWGPAHGG 271
Query: 644 ALNDAAIQ-FSAAYDAGLIPMEFVNEM--RKKGKLIMGIGHRV-KSINNPDMRVKIIKEF 699
A N+A ++ S I +++ + + +MG GHRV K N D R +K+
Sbjct: 272 A-NEAVLKMLSEIGSTENID-KYIAKAKDKDDPFRLMGFGHRVYK---NTDPRATAMKKN 326
Query: 700 ---VLQNF--PTTPLLNYALEVEKITTS----KKPNLILNVD---GVI--AVAF-VDLLR 744
+L PLL A ++E+I + L NVD G+I A+ D+
Sbjct: 327 CEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIERKLFSNVDFYSGIILKAMGIPEDM-- 384
Query: 745 HSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
FT +F L R+ G+I +++
Sbjct: 385 ----FT--------------AIFALARTSGWISQWIEM 404
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 57.6 bits (140), Expect = 8e-09
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 50/214 (23%)
Query: 590 PYVCKFLEMSLMVTADHGPAVSGAHNT---IVCARAGKDLVSSLVSGLLTI-GDRFGGAL 645
P + +++ L++ ADH S T V A DL SS+ + + + G GGA
Sbjct: 198 PLASRGIDLYLILHADHEVPAS----TFAAHVVASTLSDLYSSVAAAIAALKGPLHGGA- 252
Query: 646 NDAAIQ-FSAAYDAGLIPMEFVNEMRKKGKL-IMGIGHRV-KSINNPDMRVKIIKEF--- 699
N+ A++ + E V K G +MG+GHRV K D R KI KEF
Sbjct: 253 NEMAVRNYLEIGTPAKAK-EIVEAATKPGGPKLMGVGHRVYK---AYDPRAKIFKEFSRD 308
Query: 700 VLQNF-PTTPLLNYALEVEKITTS----KKPNLILNVD---GVI--AVAF-VDLLRHSGS 748
+ F L A +E+ S ++ L NVD G+ + +
Sbjct: 309 YVAKFGDPQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEY------ 362
Query: 749 FTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQ 782
FT +F + R +G++ H ++
Sbjct: 363 FT--------------PIFAMSRVVGWVAHVLEY 382
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 5e-08
Identities = 104/676 (15%), Positives = 190/676 (28%), Gaps = 237/676 (35%)
Query: 240 TGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDA-DVLVNFASLRSAYDSTIETLGFPQIR 298
TG+H+ ++ K++L V+ EDA N D DV D L +I
Sbjct: 11 TGEHQYQY----KDIL-SVF---EDAFVDNFDCKDVQ----------DMPKSILSKEEID 52
Query: 299 SIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILHSKLY 358
I I + T +L K ++ L+ N +M I ++
Sbjct: 53 HI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI-KTEQR 103
Query: 359 RPG--SVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILR---YQAD 413
+P + Y+ + + N+ N + +K V R LR +
Sbjct: 104 QPSMMTRMYIEQRDRLYND-NQVFAKYN--VS--------RLQ----PYLKLRQALLELR 148
Query: 414 PEVKMIVLLGEVG-G--VEEYEVCAALKDKRITKPL---VAWC-IGTCAS---------- 456
P K +++ G +G G +VC ++ + + W + C S
Sbjct: 149 PA-KNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 457 -------MFTSEVQFGHAGSCANSDAETAV------------------VKNKSLAQAGAH 491
+TS + + V+N A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--- 261
Query: 492 VPSSFDTLGDIIGSVYKDLV-SRGDIVPQPELPPPTVPMDYSWARELGLIRKPASFMTSI 550
F+ + K L+ +R V T + + + L +
Sbjct: 262 ----FN-----LSC--KILLTTRFKQV--------TDFLSAATTTHISLDHHSMTLTP-- 300
Query: 551 CDERGQELL--YAGMPISDVLKQNMGIGGVLSLLWFQRQLPPYVCKF--LEMSLMVTADH 606
DE + LL Y D LP V +S++ +
Sbjct: 301 -DE-VKSLLLKYLDCRPQD--------------------LPREVLTTNPRRLSIIAESIR 338
Query: 607 -GPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGD---RFGGALNDAAIQFSAAYDAGLIP 662
G A + C + + SSL L + F + ++ F A IP
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMF----DRLSV-FP--PSA-HIP 388
Query: 663 ----------------MEFVNEMRKKGKL----------IMGIGH---RVKSINNPDMRV 693
M VN++ K + I I + +VK N +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHR 447
Query: 694 KII------KEFVLQNFPTTPLLNY-----------ALEVEKITTSKKPNLILNVDGVIA 736
I+ K F + L Y E++ + + L+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFR---- 501
Query: 737 VAFVDL-LRHSGSFTREEAQEYVEMGAINGLFVL--------------GRSIGFIGHYMD 781
F++ +RH + +N L L R + I ++
Sbjct: 502 --FLEQKIRHDSTAWNASG------SILNTLQQLKFYKPYICDNDPKYERLVNAILDFL- 552
Query: 782 QKRLKQGLYRHPWDDI 797
++++ L + D+
Sbjct: 553 -PKIEENLICSKYTDL 567
Score = 47.5 bits (112), Expect = 2e-05
Identities = 45/312 (14%), Positives = 93/312 (29%), Gaps = 66/312 (21%)
Query: 44 RNEPWLE-SSKLV-AKPDQLIKRRGKLG-----LI-------KVNTDFKGAQSWISERMG 89
R +P+L+ L+ +P + + G LG + KV W++ +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 90 KDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIE--HKISIFVRR--AGPNYQEGL 145
+ + T+ ++ S + H I +RR Y+ L
Sbjct: 191 NCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 146 RIIREVGKTLGIPLFVFGPETHMT------AIVGMALGKKEIPSETSADGATANFLLPGG 199
++ V F + +T A I + + T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-------- 299
Query: 200 QEQTKAIVWGMQTRAVQSMLDFDF---VCRRSEPSVAAMVYPFTGDHKLKF-YWGHKEVL 255
++ K+++ D V + P +++ D + W H
Sbjct: 300 PDEVKSLL-----LKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVN-- 351
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDS-TIETLGFPQ-----IRSIAII-AEGIP 308
K+ + +VL A R +D ++ FP +++I + I
Sbjct: 352 ---CDKLTTIIE--SSLNVL-EPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIK 401
Query: 309 ENMTRKLNLLAK 320
++ +N L K
Sbjct: 402 SDVMVVVNKLHK 413
Score = 29.4 bits (65), Expect = 6.5
Identities = 6/33 (18%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 39 WAELVRNEPWLESSKLVAKPDQLIKRRGKLGLI 71
W ++++++ + +KL L++++ K I
Sbjct: 396 WFDVIKSDVMVVVNKLHKY--SLVEKQPKESTI 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 1e-05
Identities = 74/480 (15%), Positives = 138/480 (28%), Gaps = 170/480 (35%)
Query: 388 YEGVAIGGDRYPGTTFMDHILRYQA--DPEVKMIVLLGEVGGVEEY--EVCAALKDK-RI 442
+ P + L ++A + +++ + G G ++Y E L+D +
Sbjct: 127 ITARIMAKR--PFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEE----LRDLYQT 179
Query: 443 TKPLVAWCIGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502
LV I A + ++ DAE +
Sbjct: 180 YHVLVGDLIKFSAETLSELIR-------TTLDAE-------------KVFTQGLN----- 214
Query: 503 IGSVYKDLVSRGDIVPQPELPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELLYAG 562
I ++ P P DY L+ P S
Sbjct: 215 ILEWLEN----------PSNTPDK---DY-------LLSIPISC---------------- 238
Query: 563 MPISDVLKQNMGIGGVLSLLWFQRQLPPY--VCKFLEMSLMVTADHGPAVSGAHNTIVCA 620
P+ IG ++ QL Y K L + + +G +V A
Sbjct: 239 -PL---------IG----VI----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 621 RA---GK------DLVSSLVSGLLTIGDR----FGG-ALNDAAIQFSAAYDAGL-IPMEF 665
A V ++ L IG R + +L + ++ S + G+ PM
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 666 VNEMRKKGKLIMGIGHRVKS-----------INNPDMRVKIIKEFVLQNFPTTPL--LNY 712
++ + ++ ++ + +N V+ P + L LN
Sbjct: 341 ISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKN-------LVVSGPPQS-LYGLNL 391
Query: 713 ALEVEKITTS----------KKPNLI---LNV---------DGVIAVAFVDLLRHSGSFT 750
L K + +K L V + DL++++ SF
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 751 REEAQEYVEMGAING--LFVLGRSIGFIGHYMDQKRLKQGLYRHP--WD-----DISYVL 801
++ Q V +G L VL SI +R+ + R P W+ +++L
Sbjct: 452 AKDIQIPVY-DTFDGSDLRVLSGSIS--------ERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 46.6 bits (110), Expect = 4e-05
Identities = 73/412 (17%), Positives = 118/412 (28%), Gaps = 154/412 (37%)
Query: 12 KDIINR------NLDPNTAAAKCRFAAVKEETSW---AELVRNEPWLESSKLVAKPDQLI 62
D+I L T A+ F W ++ +L S ++ P LI
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCP--LI 241
Query: 63 KRRGKLGLIKVNTDFKGAQSWIS-ERMGKDQVVLITGGGIANFTNVAATFKGIVTAL--- 118
G+I++ A ++ + +G G + +G+VTA+
Sbjct: 242 ------GVIQL------AHYVVTAKLLGFT-----PGELRSYLKGATGHSQGLVTAVAIA 284
Query: 119 -----TEFQ---SKLIEHKISIFVR--RAGPNY---QEGLRIIREVGKTLGIPLFVFGPE 165
F K I I VR A PN L E + G+P
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVP------- 335
Query: 166 THMTAIVGMALGK---------KEIPSETSA-----DGATANFLL--------------- 196
+ M +I + + +P+ +GA N ++
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLR 394
Query: 197 ----PGGQEQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDH--------- 243
P G +Q++ R ++ F P VA+ PF H
Sbjct: 395 KAKAPSGLDQSRI---PFSERKLKFSNRFL-------P-VAS---PF---HSHLLVPASD 437
Query: 244 -------KLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQ 296
K + K++ IPVY D D LR S E +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVY-DTFDG----SD---------LRVLSGSISERI-VDC 482
Query: 297 IRSIA-------------IIAEGIPENMTRKLNLLAKEK---GVSIIGPATV 332
I + I+ G P + L + K GV +I T+
Sbjct: 483 IIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 45.8 bits (108), Expect = 6e-05
Identities = 51/302 (16%), Positives = 89/302 (29%), Gaps = 106/302 (35%)
Query: 198 GGQEQTKAIVWGM------QTRAVQSMLD---------FDFVCRRSEPSVAAMV--YP-- 238
G QEQ GM ++A Q + + + F S+ +V P
Sbjct: 1625 GSQEQ------GMGMDLYKTSKAAQDVWNRADNHFKDTYGF-------SILDIVINNPVN 1671
Query: 239 ----FTGDHKLKFYWGHKEVLIPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGF 294
F G+ + + + +++ + D K + +N S + S L
Sbjct: 1672 LTIHFGGEKGKRIRENYSAM---IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 295 PQIRSIAIIAEGIPENMTRKLNLLAKEKGVSIIGPATVGGLKPGCFKIGNTGGMMDNILH 354
Q A+ L K KG+ I AT G H
Sbjct: 1729 TQFTQPALTLMEK--AAFEDL----KSKGL-IPADATFAG-------------------H 1762
Query: 355 SKL--YRPGSVAYVSRSGGMSNELNNIIS------KATNGVYEGVAIGGDRY------PG 400
S L Y A S + MS + +++ +G Y PG
Sbjct: 1763 S-LGEY----AALASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 401 T---TFMDHILRYQADP---------EV-------KMIVLLGEVGGVEEY-EVCAALKDK 440
+F L+Y + E+ + V G++ ++ V +K +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 441 RI 442
+I
Sbjct: 1876 KI 1877
Score = 41.6 bits (97), Expect = 0.001
Identities = 40/260 (15%), Positives = 77/260 (29%), Gaps = 69/260 (26%)
Query: 11 GKDIINRNLDPNTAAAKCRFAAVKEET------SWAELVRNEP--------WLESSKLVA 56
G D+ + AA+ + S ++V N P + ++
Sbjct: 1632 GMDLYK-----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 57 KPDQLIKRRGKLGLIKVNTDFKGAQSWISERM-GKDQVVL-ITGGGIANFTNVAATFKGI 114
+I G +K FK + ++ +L T FT A +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-----QFTQPA-----L 1736
Query: 115 VT---ALTE-FQSKLIEHKISIF-----------VRRAGP-NYQEGLRIIREVGKTLG-- 156
A E +SK + + F A + + + ++ G T+
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 157 IPLFVFGPETH-MTAI----VGMALGK-------KEIPSETSADGATANFLLPGGQEQTK 204
+P G + M AI V + + + + T N+ + Q
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ---- 1852
Query: 205 AIVWGMQTRAVQ---SMLDF 221
V RA+ ++L+F
Sbjct: 1853 -YVAAGDLRALDTVTNVLNF 1871
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 36.4 bits (85), Expect = 0.031
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 46/233 (19%)
Query: 287 STIETLGFPQIRSIAIIAEGIPE------NMTRKLNLLAKEKGVSIIGPATVGGLKPGCF 340
T+ G ++ + II G E ++L +A + G+ IIGP
Sbjct: 79 DTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGP----------- 127
Query: 341 KIGNTGGMMDNILH-----SKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGG 395
N G+M+ + + + G+VA++S+SG + + K G + +++G
Sbjct: 128 ---NCVGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGN 184
Query: 396 --DRYPGTTFMDHILRY-QADPEVKMIVLLGE-VGGVEEYEVCAALKDKRITKPLVAWCI 451
D F + ++ Y E K I L E V +++ K KP++A
Sbjct: 185 MAD----VDFAE-LMEYLADTEEDKAIALYIEGVRNGKKFM--EVAKRVTKKKPIIALKA 237
Query: 452 GTCASMFTSEVQFGHAGSCANSDA--ETAVVKNKSLAQAGAHVPSSFDTLGDI 502
G S + H GS A S E A Q+G V ++ D + +
Sbjct: 238 GK--SESGARAASSHTGSLAGSWKIYEAA------FKQSGVLVANTIDEMLSM 282
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide
compelx, VHS domain, DXXLL sorting signal, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB:
1jpl_A 1lf8_A*
Length = 171
Score = 33.0 bits (75), Expect = 0.17
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 25/168 (14%)
Query: 373 SNELNNIISKATNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYE 432
L + ++KATN F D I + P++ + +L ++ +E+E
Sbjct: 11 GESLESWLNKATNPSNRQEDWEYII----GFCDQINKELEGPQIAVRLLAHKIQSPQEWE 66
Query: 433 VCAALKDKRITKPLVAWCIGTCASMFTSEV--------QFGHAGSCANSDAETAVVKNKS 484
AL ++ C+ C F +EV D + VK K
Sbjct: 67 ALQALT-------VLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119
Query: 485 LAQAGAHVPSSFDTLGD--IIGSVYKDLVSRGDIVPQPELPPPTVPMD 530
+ + S L + I Y L +G + P +P +
Sbjct: 120 IEL----LYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLIP 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.78
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 585 QRQLPPYVCKFLEMSLMVTA-DHGPAVSGAHN-TI 617
++Q K L+ SL + A D PA+ A T+
Sbjct: 18 EKQ----ALKKLQASLKLYADDSAPAL--AIKATM 46
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 32.0 bits (72), Expect = 0.91
Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Query: 693 VKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTRE 752
V+I++ F + F ++ ++S + V+ HS + +
Sbjct: 211 VQILERF-VVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVV---------HSFTGSAI 260
Query: 753 EAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWD 795
+ Q+ + + IG G + + + + P +
Sbjct: 261 DLQKLLNLS-------PNIFIGVNGCSLRTEENLAVVKQIPTE 296
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP,
A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus}
PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A*
1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A*
1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A*
...
Length = 267
Score = 30.2 bits (69), Expect = 2.6
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
G + G++ +R+V + G+ +
Sbjct: 57 GHGLEYGVKALRKVKEEFGLKI 78
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Length = 288
Score = 30.2 bits (69), Expect = 2.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
G EGLRI+ EV + LG+P+
Sbjct: 70 GLGMDEGLRILSEVKRQLGLPV 91
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics,
transferase; 1.80A {Haemophilus influenzae} SCOP:
c.1.10.4 PDB: 3e9a_A
Length = 292
Score = 30.3 bits (69), Expect = 2.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
GP +EGL+I +E+ T G+ +
Sbjct: 71 GPGMEEGLKIFQELKDTFGVKI 92
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;
manno-octulosonate, synthase, lipopolysaccharide, KDOP,
KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B}
PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A
3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A*
1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Length = 280
Score = 29.8 bits (68), Expect = 2.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
G +EGL+I +V GIP+
Sbjct: 68 GVGLEEGLKIFEKVKAEFGIPV 89
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A*
3und_A*
Length = 285
Score = 29.9 bits (68), Expect = 2.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
G EGL+I EV G+P+
Sbjct: 73 GVGLDEGLKIFAEVKARFGVPV 94
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla
melitensis, DAHP synthetase I, cytoplasm,
lipopolysaccharide biosynthesis; HET: PG4; 1.85A
{Brucella melitensis}
Length = 298
Score = 29.9 bits (68), Expect = 2.9
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 138 GPNYQEGLRIIREVGKTLGIPL 159
G ++ L + ++ K G P+
Sbjct: 94 GIGLEKALEVFSDLKKEYGFPV 115
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 29.8 bits (68), Expect = 3.7
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 99 GGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152
GGI VA KG++ AL E + +R AG +E +++
Sbjct: 311 GGITRADEVA---KGVIRALEE-----GLLTKPVVMRVAGTAEEEAKKLLEGKP 356
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 29.5 bits (67), Expect = 5.2
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 32/108 (29%)
Query: 604 ADHGPAVSGAHNT------IVCARAGK--------DLVSS-------LVSGLLTIGDRFG 642
AD+ AV N+ RA + L L + L + F
Sbjct: 317 ADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFP 376
Query: 643 GALNDA-------AIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRV 683
+ D A D E + ++ ++ +++ G
Sbjct: 377 AVVLDPRGRGLMCAFSLPTTADRD----ELIRQLWQRAVIVLPAGADT 420
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine
biosynthesis, STRU genomics, TB structural genomics
consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium
tuberculosis} PDB: 1hkv_A* 1hkw_A
Length = 467
Score = 29.5 bits (67), Expect = 5.3
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 12/44 (27%)
Query: 321 EKGVSIIGPA-----TVGGLKPGCFKIGNT-------GGMMDNI 352
E G +I GP VG +K GGM DNI
Sbjct: 302 EPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNI 345
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 28.7 bits (65), Expect = 7.3
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 384 TNGVYEGVAIGGDRYPGTTFMDHILRYQADPEVKMIVLL-----GEVGGVEE-YEVCAAL 437
+ +G D Y TF+ ++ R + D VK IVL G V E ++ +
Sbjct: 15 QDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEI 74
Query: 438 KDKRITKPLVAWCIGTCAS 456
K K KP+ AS
Sbjct: 75 K-KETKKPIYVSMGSMAAS 92
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 28.6 bits (65), Expect = 9.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 99 GGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152
GGI N +A GI A + +E K+ + VR G N E I+ G
Sbjct: 327 GGIVNCAIIA---NGITKA-----CRELELKVPLVVRLEGTNVHEAQNILTNSG 372
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 28.6 bits (65), Expect = 9.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 99 GGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152
GGI +A GI+ A+ E + + + VR G N + G + + + G
Sbjct: 320 GGIVRCDLIA---DGIIGAVAE-----VGVNVPVVVRLEGNNAELGAKKLADSG 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,578,902
Number of extensions: 810559
Number of successful extensions: 2165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2096
Number of HSP's successfully gapped: 61
Length of query: 806
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 705
Effective length of database: 3,881,772
Effective search space: 2736649260
Effective search space used: 2736649260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)