RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16953
(806 letters)
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 176
Score = 99 bits (248), Expect = 7e-25
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 333 GGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVA 392
G + PG KIG I+ +++ G + VSRSG ++ E + ++ G V
Sbjct: 4 GVINPGECKIG--------IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVG 55
Query: 393 IGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIG 452
IGGD + GT F D + + DP + I+L+GE+GG E LK
Sbjct: 56 IGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSF 115
Query: 453 TCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSVYK 508
+ GHAG+ A K +L AG V S LG I ++
Sbjct: 116 IAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE 171
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus
[TaxId: 274]}
Length = 374
Score = 101 bits (251), Expect = 2e-23
Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 18/212 (8%)
Query: 583 WFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFG 642
+ P + ++ +L++ A+HG + I DL S++ + + ++
Sbjct: 159 ANGVEPSPEQARLMDAALILHAEHGF-NASTFTAIAAFSTETDLYSAITAAVASLKGPRH 217
Query: 643 GALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVK---IIKEF 699
G N+A ++ E+V E K + IMG+GHRV +P V
Sbjct: 218 GGANEAVMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVA 277
Query: 700 VLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVE 759
+ +E E + NVD V + DL FT
Sbjct: 278 EKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFT--------- 328
Query: 760 MGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
+F + R G++GH ++ + L L R
Sbjct: 329 -----PIFAVARISGWVGHILEYQELDNRLLR 355
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 98.4 bits (244), Expect = 1e-22
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 21/228 (9%)
Query: 581 LLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDR 640
L F R+ ++ +L++ DH S + + S + G
Sbjct: 156 LASFAREPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPL 215
Query: 641 FGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRV--KIIKE 698
GGA +A QF D + F +++ + +MG GHRV +P ++ K+
Sbjct: 216 HGGAAEEAFKQFIEIGDPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALT 275
Query: 699 FVLQNFPTTPLLNYALEVEKITTS--KKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQE 756
+ +N A ++E++ + N D + F L FT
Sbjct: 276 LIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYMFT------ 329
Query: 757 YVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPWDDISYVLPEQ 804
LF L R++G++ H ++ + L R P YV PE
Sbjct: 330 --------ALFALSRTLGWLAHIIEYVEEQHRLIR-PRAL--YVGPEY 366
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 90.3 bits (223), Expect = 1e-21
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 331 TVGGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEG 390
+ G + PG KIG I +++PG V VSRSG ++ E + G
Sbjct: 2 SPGVITPGECKIG--------IQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTC 53
Query: 391 VAIGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWC 450
V IGGD PG+ F+D + ++ DP+ + +++ G E AA + +TKP+V +
Sbjct: 54 VGIGGDPIPGSNFIDILEMFEKDPQTE-AIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYI 112
Query: 451 IGTCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDIIGSV 506
G A + GHAG+ TA K +L AG S +G+ + +V
Sbjct: 113 AGVTAP---KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 165
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 94.8 bits (235), Expect = 4e-21
Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 28/222 (12%)
Query: 583 WFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFG 642
P + + + L + +DH AH + + A D S + + +
Sbjct: 213 NMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLH 272
Query: 643 GALNDAAIQF-------SAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKI 695
G N + + A + +++ G+++ G GH V + D R
Sbjct: 273 GLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAV--LRKTDPRYTC 330
Query: 696 IKEFVLQNFPTTPLLNYALEVEKITTS------KKPNLILNVDGVIAVAFVDLLRHSGSF 749
+EF L++ P+ P+ ++ KI + K N NVD V LL++ G
Sbjct: 331 QREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGV----LLQYYG-- 384
Query: 750 TREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
EM LF + R++G + + + L L R
Sbjct: 385 -------MTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 419
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 161
Score = 87.0 bits (215), Expect = 1e-20
Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 14/161 (8%)
Query: 347 GMMD-----NILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVAIGGDRYPGT 401
G+M+ N + + G+VA++S+SG + + K G + +++G
Sbjct: 2 GIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD--V 59
Query: 402 TFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIGTCASMFTSE 461
F + + E K I L E + + K + SE
Sbjct: 60 DFAELMEYLADTEEDKAIALYIEGVRNGKKFMEV-------AKRVTKKKPIIALKAGKSE 112
Query: 462 VQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDI 502
A S S A + + + Q+G V ++ D + +
Sbjct: 113 SGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSM 153
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 167
Score = 82.6 bits (203), Expect = 7e-19
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 333 GGLKPGCFKIGNTGGMMDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATNGVYEGVA 392
G + KIG I+ +++ G V +SRSG ++ E +S+A G V
Sbjct: 4 GIISAEETKIG--------IMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVG 55
Query: 393 IGGDRYPGTTFMDHILRYQADPEVKMIVLLGEVGGVEEYEVCAALKDKRITKPLVAWCIG 452
IGGD GTTF D + + DPE + +VL+GE+GG +E E A +KD KP+V + G
Sbjct: 56 IGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHM-KKPVVGFIGG 114
Query: 453 TCASMFTSEVQFGHAGSCANSDAETAVVKNKSLAQAGAHVPSSFDTLGDII 503
A + GHAG+ + T K ++ A+AG V + D + +++
Sbjct: 115 RSAPKGK---RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELV 162
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId:
562]}
Length = 426
Score = 84.8 bits (209), Expect = 6e-18
Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 23/218 (10%)
Query: 582 LWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRF 641
++ P + + ++ L++ ADH S +G + + + +G+ ++
Sbjct: 205 PCEPYEVNPILERAMDRILILHADHEQNAST-STVRTAGSSGANPFACIAAGIASLWGPA 263
Query: 642 GGALNDAAIQFSAAY-DAGLIPMEFVNEMRK-KGKLIMGIGHRVKSINNPDMRV--KIIK 697
G N+AA++ IP F K +MG GHRV +P V +
Sbjct: 264 HGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCH 323
Query: 698 EFVLQNFPTTPLLNYALEVEKITTSKKP----NLILNVDGVIAVAFVDLLRHSGSFTREE 753
E + + LL A+E+E I + L NVD + + S FT
Sbjct: 324 EVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFT--- 380
Query: 754 AQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYR 791
+F + R++G+I H+ + + R
Sbjct: 381 -----------VIFAMARTVGWIAHWSEMHSDGMKIAR 407
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 83.7 bits (206), Expect = 8e-18
Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 16/202 (7%)
Query: 583 WFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSSLVSGLLTIGDRFG 642
+ P K ++++L++ A+H S + D S++++G+ +
Sbjct: 160 LHGEEPPKEWEKAMDVALILYAEHEINASTLA-VMTVGSTLSDYYSAILAGIGALKGPIH 218
Query: 643 GALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLIMGIGHRVKSINNPDMRVKIIKEFVLQ 702
G + AI+ + E+ + ++ + IMG GHRV +P R+ L
Sbjct: 219 GGAVEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLG 278
Query: 703 NFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAFVDLLRHSGSFTREEAQEYVEMGA 762
+ + + + SKK + +NVD + F + +T
Sbjct: 279 DKKLFEIAERLERLVEEYLSKK-GISINVDYWSGLVFYGMKIPIELYT------------ 325
Query: 763 INGLFVLGRSIGFIGHYMDQKR 784
+F +GR G+ H +
Sbjct: 326 --TIFAMGRIAGWTAHLAEYVS 345
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
[TaxId: 56673]}
Length = 377
Score = 78.0 bits (191), Expect = 6e-16
Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 26/225 (11%)
Query: 570 KQNMGIGGVLSLLWFQRQLPPYVCKFLEMSLMVTADHGPAVSGAHNTIVCARAGKDLVSS 629
++++ + F + P V + +S+++ A+H S V DL S+
Sbjct: 149 REDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNAS-TFTARVITSTLADLHSA 207
Query: 630 LVSGLLTIGDRFGGALNDAAIQF---------SAAYDAGLIPMEFVNEMRKKGKLIMGIG 680
+ + + G N+A + + +A ++ + + K +MG G
Sbjct: 208 VTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFG 267
Query: 681 HRVKSI-NNPDMRVKIIKEFVLQNFPTTPLLNYALEVEKITTSKKPNLILNVDGVIAVAF 739
HRV ++ +K + +++++ +L +E K + N+D +
Sbjct: 268 HRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAK-QIKPNLDYPAGPTY 326
Query: 740 VDLLRHSGSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKR 784
+ + FT LF+ R G+ H M+Q
Sbjct: 327 NLMGFDTEMFT--------------PLFIAARITGWTAHIMEQVA 357
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 40.2 bits (94), Expect = 1e-04
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 256 IPVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKL 315
+PV+ + +A+ A V + DS +E I+ I I EGIP +
Sbjct: 49 LPVFNTVREAV-AATGATASVIYVPAPFCKDSILE-AIDAGIKLIITITEGIPTLDMLTV 106
Query: 316 NLLAKEKGVSIIG 328
+ E GV +IG
Sbjct: 107 KVKLDEAGVRMIG 119
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 130
Score = 39.8 bits (93), Expect = 2e-04
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 201 EQTKAIVWGMQ----TRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLI 256
+ TK I G T Q L++ V P G G + +
Sbjct: 14 KNTKVICQGFTGKQGTFHSQQALEYGTNL------VGG-TTPGKG--------GKTHLGL 58
Query: 257 PVYKKMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPE-NMTRKL 315
PV+ +++A + A V + A + E + ++ + I EGIP+ +M R
Sbjct: 59 PVFNTVKEAK-EQTGATASVIYVPPPFAAAAINEAI-DAEVPLVVCITEGIPQQDMVRVK 116
Query: 316 NLLAKEKGVSIIGP 329
+ L ++ +IGP
Sbjct: 117 HRLLRQGKTRLIGP 130
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 40.2 bits (94), Expect = 2e-04
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 88 MGKDQVVLITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRI 147
+ D+V + GI+ A+ E + + + VR G N + G +
Sbjct: 68 LSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE-----VGVNVPVVVRLEGNNAELGAKK 122
Query: 148 IREVGKTLGIPLFVFGPETHMTA---IVGMALGK 178
+ + G+ + + A +V GK
Sbjct: 123 LAD----SGLNIIAA--KGLTDAAQQVVAAVEGK 150
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 37.9 bits (88), Expect = 8e-04
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 201 EQTKAIVWGMQTRAVQSMLDFDFVCRRSEPSVAAMVYPFTGDHKLKFYWGHKEVLIPVYK 260
+T+ +V G+ R + + A V P G G + + +PVY
Sbjct: 6 RETRVLVQGITGR--EGQFHTK-QMLTYGTKIVAGVTPGKG--------GMEVLGVPVYD 54
Query: 261 KMEDAMSKNKDADVLVNFASLRSAYDSTIETLGFPQIRSIAIIAEGIPENMTRKLNLLAK 320
+++A++ + + D + F +A D+ +E I I +I EGIP + K
Sbjct: 55 TVKEAVAHH-EVDASIIFVPAPAAADAALEA-AHAGIPLIVLITEGIPTLDMVRAVEEIK 112
Query: 321 EKGVSIIG 328
G +IG
Sbjct: 113 ALGSRLIG 120
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 34.4 bits (79), Expect = 0.015
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 96 ITGGGIANFTNVAATFKGIVTALTEFQSKLIEHKISIFVRRAGPNYQEGLRIIREVG 152
I N A GI A E +E K+ + VR G N E I+ G
Sbjct: 76 ILVNIFGGIVNCAIIANGITKACRE-----LELKVPLVVRLEGTNVHEAQNILTNSG 127
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 103
Score = 28.5 bits (63), Expect = 1.1
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 747 GSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794
G T+ E + + G ++G F++ S G K+ +Y +
Sbjct: 8 GCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRI 55
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 747 GSFTREEAQEYVEMGAINGLFVLGRSIGFIGHYMDQKRLKQGLYRHPW 794
G +RE ++ + ++G ++L S G Y +Y +
Sbjct: 9 GKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRV 56
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 26.9 bits (59), Expect = 6.1
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 617 IVCARAGKDLVSSLVSGLLTIGDRFGGALNDAAIQFSAAYDAGLIPMEFVNEMRKKGKLI 676
IV AR + + L+ G L ++ + + AY+ G+ + +
Sbjct: 18 IVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVC 77
Query: 677 MGI 679
+G
Sbjct: 78 LGA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,991,636
Number of extensions: 143432
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 20
Length of query: 806
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 713
Effective length of database: 1,130,706
Effective search space: 806193378
Effective search space used: 806193378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)