BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16955
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 36/214 (16%)
Query: 488 GNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI-----PRKMPLVVQKYLDDPYLI--ND 540
GN+ WI K A A+G GI + + +++ + V+QKYL+ P L+
Sbjct: 144 GNV-WIAK------SSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGH 196
Query: 541 TKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINK-MSSS 599
KFD+R +VLV IYLY G++R +S Y NS QD+ HLTN+ I K S +
Sbjct: 197 RKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPY--NSANFQDKTCHLTNHCIQKEYSKN 252
Query: 600 YTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIV----DVVIKTMICGEHSISQ 655
Y + E+ G++ + YL + L++SI+ ++ ++C E +IS
Sbjct: 253 YGRYEE-----GNEMFFEEFNQYLMDALN---TTLENSILLQIKHIIRSCLMCIEPAIS- 303
Query: 656 LTRANQQSRYCSYELFGIDILLDSKLKPWLLEVN 689
+ Y S++LFG D ++D +LK WL+EVN
Sbjct: 304 ----TKHLHYQSFQLFGFDFMVDEELKVWLIEVN 333
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 30/211 (14%)
Query: 488 GNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI-----PRKMPLVVQKYLDDPYLI--ND 540
GN+ WI K + A+G GI + ++ + V+QKYL+ P L+
Sbjct: 147 GNV-WIAK------SSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGH 199
Query: 541 TKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINK-MSSS 599
KFD+R +VLV N IYLY G++R +S YS + QD HLTN+ I K S +
Sbjct: 200 RKFDIRSWVLVD--NQYNIYLYREGVLRTSSEPYSDTN--FQDMTSHLTNHCIQKEHSKN 255
Query: 600 YTQNEDAEACHGHKWTLKSLWSYLETEHHVDVA-ALQDSIVDVVIKTMICGEHSISQLTR 658
Y + E+ G++ + YL T ++++ ++ I +++ + C E +IS
Sbjct: 256 YGRYEE-----GNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAIS---- 306
Query: 659 ANQQSRYCSYELFGIDILLDSKLKPWLLEVN 689
+ Y S++LFG D ++D LK WL+EVN
Sbjct: 307 -TKYLPYHSFQLFGFDFMVDKNLKVWLIEVN 336
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 740 LYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAE--TLTPDDVRHLV 787
+Y++ LY LLSNE++D + ++ + Y+ +I E L P+ +RHL+
Sbjct: 196 IYNEVLY-DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 244
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 740 LYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAE--TLTPDDVRHLV 787
+Y++ LY LLSNE++D + ++ + Y+ +I E L P+ +RHL+
Sbjct: 190 IYNEVLY-DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 238
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 740 LYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAE--TLTPDDVRHLV 787
+Y++ LY LLSNE++D + ++ + Y+ +I E L P+ +RHL+
Sbjct: 193 IYNEVLY-DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 241
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 740 LYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAE--TLTPDDVRHLV 787
+Y++ LY LLSNE++D + ++ + Y+ +I E L P+ +RHL+
Sbjct: 204 IYNEVLY-DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 252
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 740 LYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAE--TLTPDDVRHLV 787
+Y++ LY LLSNE++D + ++ + Y+ +I E L P+ +RHL+
Sbjct: 193 IYNEVLY-DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 241
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 97 CERCDDSKNSYSVEMEELRRQLRQVGRNHYSPRNESVRSSLVSREFNM 144
C + D N V +EEL LR +G+N + +++ L ++EF++
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,141,198
Number of Sequences: 62578
Number of extensions: 1020922
Number of successful extensions: 2030
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2020
Number of HSP's gapped (non-prelim): 12
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)