Query psy16955
Match_columns 842
No_of_seqs 303 out of 1334
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:59:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 1E-115 3E-120 958.4 30.2 481 347-842 164-644 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 2.1E-64 4.7E-69 533.0 10.7 277 426-717 4-285 (292)
3 KOG2157|consensus 100.0 9.3E-54 2E-58 480.9 23.4 326 378-720 74-429 (497)
4 KOG2158|consensus 100.0 2.6E-48 5.5E-53 424.1 7.0 297 408-721 151-453 (565)
5 KOG2155|consensus 100.0 1.5E-32 3.3E-37 298.9 11.2 303 381-722 305-624 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.8 7.4E-20 1.6E-24 193.5 21.5 211 440-715 15-257 (262)
7 PF08443 RimK: RimK-like ATP-g 98.7 5.5E-08 1.2E-12 98.2 9.2 70 466-550 18-97 (190)
8 TIGR02291 rimK_rel_E_lig alpha 98.6 7.6E-07 1.6E-11 97.7 15.8 46 633-695 228-273 (317)
9 PRK01372 ddl D-alanine--D-alan 98.5 7.8E-06 1.7E-10 87.3 21.0 30 669-698 247-276 (304)
10 TIGR00768 rimK_fam alpha-L-glu 98.5 5.6E-07 1.2E-11 93.7 12.0 87 441-550 86-184 (277)
11 PLN02941 inositol-tetrakisphos 98.5 1.9E-06 4.2E-11 95.0 14.6 147 392-551 41-206 (328)
12 PRK10446 ribosomal protein S6 98.5 8.4E-07 1.8E-11 95.4 11.5 72 466-550 114-193 (300)
13 PRK01966 ddl D-alanyl-alanine 98.4 3.8E-06 8.3E-11 91.9 14.8 52 632-699 257-308 (333)
14 PF13535 ATP-grasp_4: ATP-gras 98.4 2.6E-06 5.7E-11 82.9 11.9 87 441-550 2-100 (184)
15 TIGR02144 LysX_arch Lysine bio 98.4 2.9E-06 6.3E-11 89.3 12.6 70 466-550 102-183 (280)
16 PRK14568 vanB D-alanine--D-lac 98.4 5.4E-06 1.2E-10 91.1 15.1 52 632-699 266-317 (343)
17 PF07478 Dala_Dala_lig_C: D-al 98.4 3.9E-06 8.4E-11 86.5 13.1 137 490-700 34-183 (203)
18 PRK14571 D-alanyl-alanine synt 98.4 1E-05 2.3E-10 86.8 16.4 141 489-700 125-273 (299)
19 PRK14569 D-alanyl-alanine synt 98.3 1.8E-05 3.9E-10 85.4 15.3 50 634-699 223-272 (296)
20 TIGR01205 D_ala_D_alaTIGR D-al 98.3 1.6E-05 3.4E-10 85.3 14.7 50 633-698 242-291 (315)
21 PRK14572 D-alanyl-alanine synt 98.2 2.9E-05 6.3E-10 85.7 16.0 68 632-716 272-345 (347)
22 COG0189 RimK Glutathione synth 98.2 1.2E-05 2.6E-10 88.4 12.0 175 431-696 107-293 (318)
23 PRK14570 D-alanyl-alanine synt 98.1 3.6E-05 7.7E-10 86.0 15.0 69 632-716 271-346 (364)
24 PRK05246 glutathione synthetas 98.0 2.5E-05 5.5E-10 85.1 11.0 71 465-550 134-214 (316)
25 PF02655 ATP-grasp_3: ATP-gras 98.0 3.7E-05 8.1E-10 76.0 10.2 39 489-533 31-71 (161)
26 PLN02257 phosphoribosylamine-- 97.9 0.00022 4.7E-09 81.6 15.9 54 667-720 264-318 (434)
27 TIGR03103 trio_acet_GNAT GNAT- 97.9 0.00027 5.9E-09 83.0 16.7 131 390-550 245-387 (547)
28 PRK12767 carbamoyl phosphate s 97.9 0.00043 9.4E-09 74.6 16.3 89 440-549 108-200 (326)
29 TIGR01161 purK phosphoribosyla 97.8 0.00068 1.5E-08 74.6 17.6 84 433-533 85-178 (352)
30 PRK13789 phosphoribosylamine-- 97.6 0.0025 5.5E-08 72.7 18.6 50 667-716 270-319 (426)
31 PF14397 ATPgrasp_ST: Sugar-tr 97.6 0.00024 5.2E-09 77.0 9.8 213 433-696 16-264 (285)
32 PRK12458 glutathione synthetas 97.6 0.00058 1.3E-08 75.7 11.9 96 431-550 117-221 (338)
33 PRK07206 hypothetical protein; 97.5 0.0013 2.7E-08 73.7 13.9 86 441-547 106-207 (416)
34 PRK06849 hypothetical protein; 97.5 0.0024 5.3E-08 71.2 16.0 86 440-547 113-203 (389)
35 PRK14573 bifunctional D-alanyl 97.5 0.0037 8E-08 76.6 18.9 52 632-699 712-763 (809)
36 TIGR01380 glut_syn glutathione 97.5 0.0012 2.7E-08 72.1 13.3 72 464-550 132-213 (312)
37 COG1181 DdlA D-alanine-D-alani 97.5 0.002 4.3E-08 71.2 14.3 51 632-698 241-292 (317)
38 TIGR01142 purT phosphoribosylg 97.4 0.0018 3.9E-08 71.5 14.0 47 632-695 229-275 (380)
39 TIGR00514 accC acetyl-CoA carb 97.4 0.004 8.7E-08 71.0 17.2 78 440-533 112-204 (449)
40 PRK13790 phosphoribosylamine-- 97.4 0.0025 5.5E-08 71.5 14.3 48 489-548 102-159 (379)
41 PRK00885 phosphoribosylamine-- 97.4 0.0075 1.6E-07 68.1 18.2 53 668-721 265-317 (420)
42 PRK06019 phosphoribosylaminoim 97.3 0.015 3.4E-07 64.9 19.6 85 432-533 86-180 (372)
43 PRK14016 cyanophycin synthetas 97.3 0.0018 3.8E-08 78.7 12.7 85 441-550 212-305 (727)
44 PRK06111 acetyl-CoA carboxylas 97.3 0.0064 1.4E-07 68.9 16.4 76 441-533 113-204 (450)
45 TIGR00877 purD phosphoribosyla 97.3 0.0062 1.4E-07 68.6 15.9 53 667-720 266-318 (423)
46 TIGR01235 pyruv_carbox pyruvat 97.3 0.0057 1.2E-07 77.6 16.9 91 440-552 112-216 (1143)
47 PRK08462 biotin carboxylase; V 97.2 0.006 1.3E-07 69.4 15.6 78 441-533 115-206 (445)
48 PRK08591 acetyl-CoA carboxylas 97.2 0.0085 1.8E-07 68.1 16.7 78 441-533 113-204 (451)
49 PRK05586 biotin carboxylase; V 97.2 0.0074 1.6E-07 68.9 16.3 48 632-695 249-296 (447)
50 PRK08463 acetyl-CoA carboxylas 97.2 0.0054 1.2E-07 70.9 15.2 79 440-533 111-204 (478)
51 TIGR01435 glu_cys_lig_rel glut 97.2 0.01 2.3E-07 72.1 17.6 47 490-550 512-569 (737)
52 PRK06524 biotin carboxylase-li 97.1 0.016 3.5E-07 67.7 17.8 75 632-719 275-354 (493)
53 PRK12833 acetyl-CoA carboxylas 97.1 0.0079 1.7E-07 69.3 15.2 79 440-533 115-207 (467)
54 PRK13278 purP 5-formaminoimida 97.1 0.0052 1.1E-07 69.1 12.8 48 490-549 150-210 (358)
55 PRK02186 argininosuccinate lya 97.1 0.0065 1.4E-07 75.3 14.8 86 441-549 105-199 (887)
56 TIGR02068 cya_phycin_syn cyano 97.1 0.0036 7.8E-08 77.4 12.2 85 441-550 211-304 (864)
57 COG1821 Predicted ATP-utilizin 97.0 0.005 1.1E-07 66.2 11.0 34 489-533 138-171 (307)
58 PRK07178 pyruvate carboxylase 97.0 0.02 4.3E-07 66.2 16.4 79 440-533 111-203 (472)
59 PRK02471 bifunctional glutamat 96.9 0.0054 1.2E-07 74.9 12.0 84 443-550 488-582 (752)
60 PRK12999 pyruvate carboxylase; 96.9 0.014 3.1E-07 74.2 16.0 78 441-533 117-208 (1146)
61 PRK09288 purT phosphoribosylgl 96.9 0.014 2.9E-07 65.0 14.1 47 632-695 242-288 (395)
62 PLN02948 phosphoribosylaminoim 96.8 0.042 9.1E-07 65.4 18.0 47 632-694 246-292 (577)
63 PRK08654 pyruvate carboxylase 96.8 0.024 5.2E-07 66.2 15.2 80 440-534 112-205 (499)
64 KOG2158|consensus 96.7 0.00065 1.4E-08 77.3 1.2 58 665-723 12-69 (565)
65 TIGR01369 CPSaseII_lrg carbamo 96.6 0.036 7.8E-07 70.1 16.6 69 466-548 684-762 (1050)
66 PRK06395 phosphoribosylamine-- 96.6 0.071 1.5E-06 61.3 17.4 76 632-719 245-320 (435)
67 PF15632 ATPgrasp_Ter: ATP-gra 96.6 0.054 1.2E-06 60.5 15.4 61 441-516 105-166 (329)
68 PRK05294 carB carbamoyl phosph 96.5 0.032 6.9E-07 70.7 15.1 67 466-547 684-761 (1066)
69 PRK05784 phosphoribosylamine-- 96.5 0.054 1.2E-06 63.3 15.8 75 633-717 261-335 (486)
70 PF05770 Ins134_P3_kin: Inosit 96.4 0.062 1.4E-06 59.5 14.8 104 437-550 87-191 (307)
71 PRK13277 5-formaminoimidazole- 96.2 0.042 9.2E-07 62.0 12.1 60 466-549 141-217 (366)
72 PF02955 GSH-S_ATP: Prokaryoti 95.9 0.0097 2.1E-07 60.7 4.9 73 463-550 9-91 (173)
73 PLN02735 carbamoyl-phosphate s 95.8 0.17 3.8E-06 64.5 16.5 47 490-547 738-794 (1102)
74 PF01071 GARS_A: Phosphoribosy 95.7 0.26 5.6E-06 51.5 14.3 26 666-692 164-189 (194)
75 TIGR02712 urea_carbox urea car 95.6 0.28 6E-06 63.2 16.8 78 440-533 111-202 (1201)
76 PRK12815 carB carbamoyl phosph 95.5 0.32 7E-06 62.0 17.0 47 489-547 705-759 (1068)
77 PLN02735 carbamoyl-phosphate s 95.4 0.14 3.1E-06 65.3 13.6 38 490-533 181-228 (1102)
78 PRK05294 carB carbamoyl phosph 95.2 0.2 4.2E-06 63.8 13.7 75 442-533 127-211 (1066)
79 COG0439 AccC Biotin carboxylas 94.8 0.42 9.2E-06 55.6 13.7 81 441-536 113-207 (449)
80 TIGR01369 CPSaseII_lrg carbamo 94.7 0.39 8.5E-06 61.1 14.4 75 442-533 126-210 (1050)
81 PF02750 Synapsin_C: Synapsin, 94.5 0.14 2.9E-06 53.6 8.1 89 439-547 7-103 (203)
82 PRK12815 carB carbamoyl phosph 93.5 0.66 1.4E-05 59.2 13.1 59 466-533 143-211 (1068)
83 PF14403 CP_ATPgrasp_2: Circul 92.7 0.22 4.7E-06 57.9 6.5 66 464-537 308-388 (445)
84 PF02222 ATP-grasp: ATP-grasp 92.3 7 0.00015 40.0 16.1 50 476-533 17-73 (172)
85 PF02786 CPSase_L_D2: Carbamoy 92.0 2.4 5.3E-05 44.5 12.8 64 464-535 15-92 (211)
86 COG2232 Predicted ATP-dependen 91.9 0.42 9E-06 53.6 7.3 43 490-546 150-192 (389)
87 KOG3895|consensus 88.7 2.4 5.2E-05 48.0 9.6 107 421-547 172-292 (488)
88 COG0151 PurD Phosphoribosylami 87.6 23 0.0005 41.3 16.8 73 632-716 240-313 (428)
89 COG1038 PycA Pyruvate carboxyl 85.2 6.4 0.00014 48.9 11.2 67 463-537 134-214 (1149)
90 COG4770 Acetyl/propionyl-CoA c 83.1 14 0.0003 44.5 12.6 172 464-717 129-317 (645)
91 KOG0369|consensus 77.0 8.7 0.00019 46.9 8.4 53 475-538 175-241 (1176)
92 COG2308 Uncharacterized conser 74.7 11 0.00024 44.1 8.3 125 432-573 312-457 (488)
93 KOG0238|consensus 67.5 69 0.0015 38.5 12.5 66 464-537 125-204 (670)
94 PF04174 CP_ATPgrasp_1: A circ 65.7 6 0.00013 44.6 3.7 54 666-719 66-120 (330)
95 PF07065 D123: D123; InterPro 65.7 39 0.00084 37.7 9.9 26 668-693 214-240 (299)
96 COG0027 PurT Formate-dependent 63.2 54 0.0012 37.3 10.3 65 470-551 132-208 (394)
97 KOG2983|consensus 53.1 47 0.001 36.8 7.6 22 669-690 229-250 (334)
98 PHA02117 glutathionylspermidin 49.2 31 0.00067 40.0 5.9 52 491-549 309-366 (397)
99 COG1759 5-formaminoimidazole-4 48.3 2.1E+02 0.0046 32.8 11.8 59 465-547 138-211 (361)
100 TIGR02049 gshA_ferroox glutama 33.3 2E+02 0.0043 33.6 8.8 85 489-593 257-362 (403)
101 COG0458 CarB Carbamoylphosphat 32.5 9E+02 0.019 28.6 14.5 27 672-698 269-296 (400)
102 COG0754 Gsp Glutathionylspermi 31.0 1.8E+02 0.004 33.7 8.1 27 668-694 96-124 (387)
103 PRK10507 bifunctional glutathi 30.2 1.1E+02 0.0023 37.8 6.5 52 491-549 529-587 (619)
104 COG3919 Predicted ATP-grasp en 27.6 68 0.0015 36.3 4.0 118 360-496 29-154 (415)
105 COG2308 Uncharacterized conser 25.1 1.1E+02 0.0024 36.3 5.2 56 664-719 141-197 (488)
106 KOG0237|consensus 25.0 1.4E+03 0.031 28.6 14.4 70 452-533 113-196 (788)
107 PF12088 DUF3565: Protein of u 24.4 31 0.00067 30.2 0.5 26 15-40 27-58 (61)
108 KOG3620|consensus 24.2 95 0.0021 40.7 4.7 82 235-317 1178-1266(1626)
109 PF08886 GshA: Glutamate-cyste 23.1 2.7E+02 0.0059 32.6 7.7 87 489-595 260-367 (404)
No 1
>KOG2156|consensus
Probab=100.00 E-value=1.4e-115 Score=958.37 Aligned_cols=481 Identities=53% Similarity=0.936 Sum_probs=454.5
Q ss_pred ccccCCCCCCCCeEEeecCCCCCCCCCcccccceEEEecCCchHHHHHHHHhcCCEEecCCCCeEEEEcccCCchhhhcc
Q psy16955 347 GLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTL 426 (842)
Q Consensus 347 ~l~~Slf~~~pp~i~F~~~~~~~~~~p~~~rk~L~wk~s~~~~~lVr~~L~~~GF~~v~~~~dW~~~W~~~~k~~~~~~L 426 (842)
-++||+|++|||||.|.+++++++++|++++..|+|+.+..++.+|+.+|.++||++++..++|+++|++|+++..|+.|
T Consensus 164 ~v~PSlfp~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~dw~g~Wg~h~ksp~fr~i 243 (662)
T KOG2156|consen 164 EVLPSLFPRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVNDDWMGVWGHHLKSPSFRAI 243 (662)
T ss_pred eechhhcCCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEecccchHHHHhhhhcCCchhhhh
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC
Q psy16955 427 KESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA 506 (842)
Q Consensus 427 ~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs 506 (842)
++||+||||||++.|||||.||++|.+++.+||.++|.|+|+||+||.|.++|+++|+++.. ..||||| ++++
T Consensus 244 r~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nas-r~wIVkp------pasa 316 (662)
T KOG2156|consen 244 RSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNAS-RLWIVKP------PASA 316 (662)
T ss_pred hhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCcc-ccEEecC------cccc
Confidence 99999999999999999999999999999999999999999999999999999999998655 4599999 9999
Q ss_pred CCccEEEEccccccCCCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcce
Q psy16955 507 RGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYM 586 (842)
Q Consensus 507 RGrGI~vi~~l~qI~~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~ 586 (842)
||.||.++++|++++++++.|||+||++|+||+|.|||+|+||+|||++|||||+|++||+|||+++|++..+++.|+||
T Consensus 317 Rg~gIrv~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKym 396 (662)
T KOG2156|consen 317 RGIGIRVINKWSQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYM 396 (662)
T ss_pred cCcceEeccchhhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCC
Q psy16955 587 HLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYC 666 (842)
Q Consensus 587 HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~n 666 (842)
|||||++||.+. |..+++.+.|+|+||++.++|.+|.++ |+|.++||.+|+++|++||++.|..|..+++.+...+..
T Consensus 397 hltnYs~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~q-Gvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~ 474 (662)
T KOG2156|consen 397 HLTNYSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQ-GVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYS 474 (662)
T ss_pred Eeccccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCch
Confidence 999999999988 999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCCcccccccccccccccccccccccc
Q psy16955 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLY 746 (842)
Q Consensus 667 cFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~~~~~~~~~~~~~~~~~~c~~k~l~ 746 (842)
|||||||||+||++++|||||||.+|||++.+++|-.+|.+||.++|+|+|+..|.+.+.. +.+....+ .+++.
T Consensus 475 CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~--~~a~~~~s----t~ri~ 548 (662)
T KOG2156|consen 475 CFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTD--SLAELSLS----TKRIT 548 (662)
T ss_pred hhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccch--hhhhhCCC----ccccc
Confidence 9999999999999999999999999999999999999999999999999999988442221 11222222 25677
Q ss_pred CCCCCHHHHhhhhhhhcccchHHHHHhhhcCCCHHHHHHHHHHHHHHhcCCCcEEeCCCCCccccccccCCCChHhHHHH
Q psy16955 747 TPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFD 826 (842)
Q Consensus 747 ~~~lS~ee~~K~~~~~~~~~~~~~~~~il~~Lt~~d~~~L~~~edE~~rrG~F~RIFPt~~s~~Y~~~fe~~ry~N~LL~ 826 (842)
+.+++.|++.|+..|++....++.+..||++|||+|+++|+++|||+.|+|.|+||||+..++.|.+||+.+||+|+|++
T Consensus 549 ~~~~~~e~l~K~~~~t~~~~dq~ey~~il~~LtpddvR~Lv~aedEl~r~~~~erIFPt~~t~~yl~y~~~~ry~n~ll~ 628 (662)
T KOG2156|consen 549 TDKLTREELIKHAAHTCKIEDQEEYVLILDNLTPDDVRCLVEAEDELARRGDFERIFPTAITSPYLKYVEAPRYYNILLD 628 (662)
T ss_pred cccccHHHHHHHHHHhhcccchHHHHHHHhcCChHHHHHHHHHHHHHHhcccHhhhCCCcCccHHHHHhhhhHHHHHHHH
Confidence 88999999999999988655555566999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccC
Q psy16955 827 AWEYAHHADRSKDFAL 842 (842)
Q Consensus 827 ~W~~~~~~~r~~gi~~ 842 (842)
+|+.+|.+||.+||+|
T Consensus 629 aWetry~~Nr~~Gi~l 644 (662)
T KOG2156|consen 629 AWETRYAHNRCQGIAL 644 (662)
T ss_pred HHHHHHhcchhhhHHH
Confidence 9999999999999985
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=2.1e-64 Score=533.02 Aligned_cols=277 Identities=47% Similarity=0.820 Sum_probs=155.4
Q ss_pred cCcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCC
Q psy16955 426 LKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPAS 505 (842)
Q Consensus 426 L~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~g 505 (842)
..++|+||||||++.|++|+.|+++++++.+.++. .++|+|+||+||.+..+|..++.+. ..+.||+|| .++
T Consensus 4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~-~~~~~p~t~~l~~~~~~~~~~~~~~-~~~~wI~KP------~~~ 75 (292)
T PF03133_consen 4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPK-EFDFYPETFILPQDYKEFLKYFEKN-PKNLWIVKP------SNG 75 (292)
T ss_dssp -CHHTT-TSS--EEEE------------------------------HHHHHHHHHHHHHTT-S---EEEEE------S--
T ss_pred CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCC-cccCCcceEecHHHHHHHHHHHhcC-CCCEEEEec------ccc
Confidence 35689999999999999999999999999887763 4899999999999999999988754 337999999 999
Q ss_pred CCCccEEEEccccccC-----CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCc
Q psy16955 506 ARGIGIKVVHKWNQIP-----RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSET 580 (842)
Q Consensus 506 sRGrGI~vi~~l~qI~-----~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~n 580 (842)
+||+||+++++++++. ...++|||+||+|||||+|||||||+||||||++||+||+|++|++|||+++|+....+
T Consensus 76 ~rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~ 155 (292)
T PF03133_consen 76 SRGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDD 155 (292)
T ss_dssp -----EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS--------
T ss_pred CCCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeeccccc
Confidence 9999999999988876 57899999999999999999999999999999999999999999999999999965678
Q ss_pred ccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhc
Q psy16955 581 LQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRAN 660 (842)
Q Consensus 581 l~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~ 660 (842)
+.|.++||||+++||.+. ...++.....+.+|++..|+.+++. |.+.+.+|++|.++|+++++++.. ......
T Consensus 156 ~~~~~~HlTN~~i~k~~~--~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~~ 228 (292)
T PF03133_consen 156 LSDRFAHLTNYSIQKKSE--SNEEDSNEENGNKWSLDQFEEYLKE--GIDWEKIWEKICDIIIKTILAAEF---RSSQPN 228 (292)
T ss_dssp ------------------------------EEEHHHHHHHCTTTS--SS-STTTCHHHHHHHHHHHHHH-H---HHHH--
T ss_pred cccccccccccccccccc--cccccccccccccchhhhhhhhccc--CCCcccchhhhhHHHHHHhhhhhh---hhcccc
Confidence 889999999999999855 1222233456789999999999997 688999999999999999999841 112223
Q ss_pred ccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcC
Q psy16955 661 QQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVG 717 (842)
Q Consensus 661 ~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~g 717 (842)
...+.+|||+||||||||++++|||||||.+|+|+.+++.+..++.+||.|+|+++.
T Consensus 229 ~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v 285 (292)
T PF03133_consen 229 MPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVV 285 (292)
T ss_dssp TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS
T ss_pred ccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEe
Confidence 456689999999999999999999999999999999999999999999999999544
No 3
>KOG2157|consensus
Probab=100.00 E-value=9.3e-54 Score=480.90 Aligned_cols=326 Identities=30% Similarity=0.530 Sum_probs=282.3
Q ss_pred cceEEEecCCchHHHHHHHHhcCCEEec-CCCCeEEEEccc-CCchhhhccCcC-CeecccCCCCcccchHHHHHHHHHH
Q psy16955 378 KHLKWKLSPITPVVVRKTILNTGYRLVR-KSSEWCGTWGKH-MKSLSFRTLKES-QKINHFPGTFQIGRKDRLWKNLLKC 454 (842)
Q Consensus 378 k~L~wk~s~~~~~lVr~~L~~~GF~~v~-~~~dW~~~W~~~-~k~~~~~~L~p~-QkVNHFPgs~~LtrKd~L~rnL~rm 454 (842)
..++|+....++.+|.+++.+.||..+. ...+|+++|... ....++..+.++ |++||||+..+|++||.|+++++++
T Consensus 74 ~~i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~ 153 (497)
T KOG2157|consen 74 HKIKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRY 153 (497)
T ss_pred CceEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHH
Confidence 4588998888899999999999998776 678899999763 334556778888 9999999999999999999999999
Q ss_pred HHHcCCC-----------CCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc---
Q psy16955 455 MMKYGDK-----------EFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI--- 520 (842)
Q Consensus 455 ~kk~g~~-----------~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI--- 520 (842)
+..++.. .++|+|.||.+|.+...|...+++++..+.||+|| .+.+||+||.+++.++++
T Consensus 154 ~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP------~~~srg~GI~~~~~l~~l~~~ 227 (497)
T KOG2157|consen 154 LALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKP------ASKSRGRGIFLFNTLSDLQAI 227 (497)
T ss_pred HHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEecc------ccccccceeEEecchhhhhhh
Confidence 9998753 58999999999999999999998878899999999 999999999999866542
Q ss_pred ----------CCCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcceeecc
Q psy16955 521 ----------PRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTN 590 (842)
Q Consensus 521 ----------~~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~HLTN 590 (842)
.....++||+||++||||+|+|||||.||+||+++||.+|.|++|++|||+++|.+ ..++.|.++||||
T Consensus 228 ~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLtN 306 (497)
T KOG2157|consen 228 VDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLTN 306 (497)
T ss_pred hhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhhc
Confidence 34678999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred cccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCc
Q psy16955 591 YSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDV---AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCS 667 (842)
Q Consensus 591 ySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~---~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~nc 667 (842)
++|||..++|....+.- ..|++|++..|+.||+.. |-.. ...+..|...|+..+.++.+.+ ....+|
T Consensus 307 ~siqK~~~~~~~~~s~~-~~~~~w~~~~~~~yl~~~-~~~~~~~~~~i~~~~~~iv~~v~~s~~~~--------~~~~n~ 376 (497)
T KOG2157|consen 307 VSIQKLYPNYCHLSSLL-SESCKWTLNSLLLYLRNI-GSPCLELKLQIKPIITGIVLSVFASATTV--------PSLANC 376 (497)
T ss_pred cccccCCCCcccccccc-cCCCcccHHHHHHHHHhh-cCCcccccccchhhhhhhhhhhhhhcccc--------ccccch
Confidence 99999998887654322 378999999999999986 5443 3444555555555555544332 346799
Q ss_pred eeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccC
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHL 720 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~ 720 (842)
||+||||||||++++|||||||++|+|..++..|..++..++.|++..+.++.
T Consensus 377 FElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~~~~ 429 (497)
T KOG2157|consen 377 FELYGFDFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDVLKVVVDPR 429 (497)
T ss_pred hhhhCcceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHhhccccCcc
Confidence 99999999999999999999999999999999999999999999999988753
No 4
>KOG2158|consensus
Probab=100.00 E-value=2.6e-48 Score=424.08 Aligned_cols=297 Identities=32% Similarity=0.445 Sum_probs=258.4
Q ss_pred CCeEEEEcccCCc-hhhhccCcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhc
Q psy16955 408 SEWCGTWGKHMKS-LSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERN 486 (842)
Q Consensus 408 ~dW~~~W~~~~k~-~~~~~L~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~ 486 (842)
..|.+.|.-.... ..+++.. +|++|||||+.++. ||.|- |.+|++.|+ ++|.|+|.+|.||.++..|.++.+..
T Consensus 151 ~~~~~l~~v~f~~~~~~~~~~-fqrvn~fPgm~e~~-kd~Ls--l~~mqkifp-eey~fyp~sw~lPa~l~df~a~~~~~ 225 (565)
T KOG2158|consen 151 EKYENLLAVAFQTFLSGRAAS-FQRENNFPGMREKE-KDILD--LLEMQKIFP-EEYMFYPTSWRLPAPLCDFPASTEIM 225 (565)
T ss_pred hhhhhHHHHhhchhhhccchh-hhhhhcCchHHHHH-HHHHh--HHHHHhcCh-HHhcCCCccccCchHHHHHHHHHHHh
Confidence 3455555433222 1234455 89999999999999 99998 899999986 78999999999999999998887653
Q ss_pred CCcceEEEcCCCccCCCCCCCCccEEEEccccccCCCCcceeeecccCcccC-CCCeeEEEEEEEEeecCCceEEEEcCc
Q psy16955 487 CGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLI-NDTKFDLRLYVLVTSFNPLRIYLYDNG 565 (842)
Q Consensus 487 ~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~~~~VVQkYIenPLLI-dGrKFDLRvYVLVTS~dPLRIYlY~eG 565 (842)
..++|+|| ..|++|.||.+++++..+......+||+||..|||| |+.|||+|+|+|++|+|||+||++++|
T Consensus 226 --Krtfivkp------Dsgaqg~giylisDir~~g~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eG 297 (565)
T KOG2158|consen 226 --KRTFIVKP------DSGAQGSGIYLISDIREKGEYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEG 297 (565)
T ss_pred --cccEEECC------CCCCCCcceeeechhhhhhHHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccc
Confidence 34899999 999999999999888777666678999999999999 999999999999999999999999999
Q ss_pred eEeeecccCCCC-CCcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy16955 566 LVRFASVKYSAN-SETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIK 644 (842)
Q Consensus 566 LVRfAt~kYs~~-~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiK 644 (842)
++||||++|..+ .+|..+.|||||||++|+.+.+|.-.+. +..-|+|..|+.....|+.. |+|+..+|.+|+.++++
T Consensus 298 laRFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~-sq~~gSkR~Lsti~~ql~s~-gvdtk~vwsDik~v~ik 375 (565)
T KOG2158|consen 298 LARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDN-SQVSGSKRQLSTINEQLDSL-GVDTKFVWSDIKIVFIK 375 (565)
T ss_pred hhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCc-ccccchhHHHHHHHHHHHhc-CchHHHHHhhhhhhhcc
Confidence 999999999964 5688999999999999999999976542 34568999999999999999 99999999999999999
Q ss_pred HHHhhhhhhhhHhhhcccC---CCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCC
Q psy16955 645 TMICGEHSISQLTRANQQS---RYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLP 721 (842)
Q Consensus 645 TIlA~e~~l~~~~~~~~~~---r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p 721 (842)
|.+|.-+.+...+..+.+. ...||+++|||++++.++.|+|+|||..|++......|... .||.++|+++...+-
T Consensus 376 tvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~vs~vl~ 453 (565)
T KOG2158|consen 376 TVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRVSNVLL 453 (565)
T ss_pred hhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhhHHHHH
Confidence 9999999888777666543 35799999999999999999999999999999998888777 899999998876543
No 5
>KOG2155|consensus
Probab=99.97 E-value=1.5e-32 Score=298.86 Aligned_cols=303 Identities=26% Similarity=0.389 Sum_probs=240.3
Q ss_pred EEEecCCchHHHHHHHHhcCCEEecCCCCeEEEEcc-cCCchhhhcc---CcCCeecccCCCCcccchHHHHHHHHHHHH
Q psy16955 381 KWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGK-HMKSLSFRTL---KESQKINHFPGTFQIGRKDRLWKNLLKCMM 456 (842)
Q Consensus 381 ~wk~s~~~~~lVr~~L~~~GF~~v~~~~dW~~~W~~-~~k~~~~~~L---~p~QkVNHFPgs~~LtrKd~L~rnL~rm~k 456 (842)
++|+- .+-..|...|.+.-|.++++..+++++|.. |.+ +|+.+ .+.|.||+||....|+-||.|+...++
T Consensus 305 ~~kVY-tD~~Qv~e~Lt~p~f~~t~~~kdADilw~~~hf~--Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r--- 378 (631)
T KOG2155|consen 305 KIKVY-TDDTQVTEHLTNPKFEYTDDIKDADILWMIKHFH--DYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR--- 378 (631)
T ss_pred eeEEE-cCcHHHHHhccCCceEeccCccccceeeehhhHH--HHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh---
Confidence 44543 345778999999999999999999999954 433 46665 789999999999999999999988765
Q ss_pred HcCCCCCCeeeccccCchhHHHHHHHhh---hcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC---CCCcceeee
Q psy16955 457 KYGDKEFGFTPRTYVLPGDDKRLRASWE---RNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP---RKMPLVVQK 530 (842)
Q Consensus 457 k~g~~~~~FlP~TfiLP~d~~~f~~~~~---k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~---~~~~~VVQk 530 (842)
.+| ..+|+|.||.|..++.+|+.++. +++.++.||+|| ++.+||....|+.++.+|. ..++.|||+
T Consensus 379 ~~g--~~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KP------WNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~k 450 (631)
T KOG2155|consen 379 DPG--KNDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKP------WNLARGMDTTVTEDLNQIIRMIETGPKIVCK 450 (631)
T ss_pred cCC--CCcccccccccccchHHHHHHHHHHHhcCcCceEEech------hhhhhcccchhhhhHHHHHHHHhcCchHHHH
Confidence 334 55799999999999999998875 478899999999 9999999999999999885 478999999
Q ss_pred cccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcceeec--ccccccCCCcCCCCccccc
Q psy16955 531 YLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLT--NYSINKMSSSYTQNEDAEA 608 (842)
Q Consensus 531 YIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~HLT--NySINK~s~nY~~~ed~~~ 608 (842)
||++|+|..|-|||||..||+.|++||++|+|+-.++||+..+|+ .+++.+...|+| ||- -|.
T Consensus 451 YIe~P~LFr~gKFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fs--L~~f~dyEtHFTVmNY~-~kl------------ 515 (631)
T KOG2155|consen 451 YIERPLLFRNGKFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFS--LSNFEDYETHFTVMNYL-EKL------------ 515 (631)
T ss_pred hcCCcceeecCccceEEEEEEccccchhhhheeheeeeecCCccc--hhhhhhhhhhhhhhhHH-HHH------------
Confidence 999999998789999999999999999999999999999999998 568999999999 543 111
Q ss_pred cCCcccchHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEe--cCC--Cce
Q psy16955 609 CHGHKWTLKSLWSYLETEH-HVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILL--DSK--LKP 683 (842)
Q Consensus 609 ~~G~KWSL~~L~~yLe~~~-Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLL--Ded--LKP 683 (842)
....-.+|...+++.+ .+.+..+..+|..+|.+.+.++...-... ......+.-.+||+|+|+ |.+ ++|
T Consensus 516 ---~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~aire~~eaaak~~~e~---g~a~~p~sramygvDlml~~~~~pVmq~ 589 (631)
T KOG2155|consen 516 ---LQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAIREPFEAAAKLNPEC---GAALLPNSRAMYGVDLMLAGDLTPVMQP 589 (631)
T ss_pred ---hhccHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHhhhhccCCcc---cccCCchhhhhhhheeeeccCCCccccc
Confidence 1112456666676653 23467777788888877776653211100 011124566899999999 666 889
Q ss_pred EEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCC
Q psy16955 684 WLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPE 722 (842)
Q Consensus 684 WLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~ 722 (842)
-|||||.+|++..++..+. ....++|..+-+.-|+
T Consensus 590 qILEVNFnPDc~RACrYhp----dFfnnVFstLFLDep~ 624 (631)
T KOG2155|consen 590 QILEVNFNPDCKRACRYHP----DFFNNVFSTLFLDEPS 624 (631)
T ss_pred eeEEEecCcchHHHhhcCh----hHHHhHHHHhhccCCC
Confidence 9999999999998887544 5666777776665443
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.85 E-value=7.4e-20 Score=193.51 Aligned_cols=211 Identities=19% Similarity=0.236 Sum_probs=154.6
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCc--hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP--GDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKW 517 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP--~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l 517 (842)
.+.+|+.+++.|.+ .+..-.|+|+|..+. +++.+|+..+ +..++|| ..|++|+||..+...
T Consensus 15 ~~~~Kw~v~~~L~~-----~~~l~~~LP~T~~~~~~~~l~~~L~~y------~~vylKP------~~Gs~G~gI~ri~~~ 77 (262)
T PF14398_consen 15 GFFDKWEVYKALSR-----DPELRPYLPETELLTSFEDLREMLNKY------KSVYLKP------DNGSKGKGIIRIEKK 77 (262)
T ss_pred CCCCHHHHHHHHHc-----CCcchhhCCCceEcCCHHHHHHHHHHC------CEEEEEe------CCCCCCccEEEEEEe
Confidence 46899999999875 235678999998884 3455554443 5799999 999999999988652
Q ss_pred cc-----------------------------cCCCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEe
Q psy16955 518 NQ-----------------------------IPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVR 568 (842)
Q Consensus 518 ~q-----------------------------I~~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVR 568 (842)
.. ....+.||||++|+ -..++|+.||||+.|.-.. -..|......+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~---~G~W~vtg~~~R 153 (262)
T PF14398_consen 78 GGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNG---SGKWQVTGIVAR 153 (262)
T ss_pred CCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECC---CCCEEEEEEEEE
Confidence 21 11356899999997 6668999999999998754 346888999999
Q ss_pred eecccCCCCCCcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy16955 569 FASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMIC 648 (842)
Q Consensus 569 fAt~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA 648 (842)
+|....- +||.+ .+|..+++.+++... ++ ...+..+|++++..+..+
T Consensus 154 va~~~~i------------vTN~~----------------~GG~~~~~~~~l~~~-~~----~~~~~~~l~~~a~~ia~~ 200 (262)
T PF14398_consen 154 VAKPGSI------------VTNLS----------------QGGTALPFEEVLRQS-EE----AEKIREELEDLALEIAQA 200 (262)
T ss_pred EcCCCCc------------eeccC----------------CCceecCHHHHHHhh-hh----HHHHHHHHHHHHHHHHHH
Confidence 9975532 57754 256677777766655 22 577788888888766665
Q ss_pred hhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChh-hHHhHHHHHHHHHHH
Q psy16955 649 GEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL-DLAVKGPLVQDLFNI 715 (842)
Q Consensus 649 ~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Spl-D~~VK~~LI~D~L~L 715 (842)
.+..+ + ..|..+|+||.||.+|++||||||+.|+-.....+ |..+..+++...|.-
T Consensus 201 le~~~--------~---~~~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~Y 257 (262)
T PF14398_consen 201 LEKHF--------G---GHLGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPLEY 257 (262)
T ss_pred HHHhc--------C---CceeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHHHH
Confidence 44322 1 12788899999999999999999999998766554 455666665555543
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.69 E-value=5.5e-08 Score=98.19 Aligned_cols=70 Identities=23% Similarity=0.452 Sum_probs=34.3
Q ss_pred eeccccCc--hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcceeeecccCc
Q psy16955 466 TPRTYVLP--GDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLVVQKYLDDP 535 (842)
Q Consensus 466 lP~TfiLP--~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~VVQkYIenP 535 (842)
+|+|++.. .+..++.+.+. ....|+|| ..+++|+||.++++..++. ...++++|+||+.+
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~----~~p~ViKp------~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~ 87 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG----GFPVVIKP------LRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD 87 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH------SSEEEE-------SB-------EEEESHCHHHHHHH-----TTT-EEEE----S
T ss_pred CCCEEEECCHHHHHHHHHHhc----CCCEEEee------CCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC
Confidence 69998774 45555665552 34699999 9999999999998755432 24688999999732
Q ss_pred ccCCCCeeEEEEEEE
Q psy16955 536 YLINDTKFDLRLYVL 550 (842)
Q Consensus 536 LLIdGrKFDLRvYVL 550 (842)
+| -|+|+||+
T Consensus 88 ---~g--~d~Rv~Vi 97 (190)
T PF08443_consen 88 ---GG--RDLRVYVI 97 (190)
T ss_dssp ---S-----EEEEEE
T ss_pred ---CC--cEEEEEEE
Confidence 12 59999886
No 8
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.61 E-value=7.6e-07 Score=97.75 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
..|++|.+++.++..+ .+| .++|+||++|.++.|||||||..|.+.
T Consensus 228 p~~~el~~la~~A~~~----------------~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWEL----------------TGL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHh----------------cCC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 5677777777655443 134 799999999988999999999999997
No 9
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.55 E-value=7.8e-06 Score=87.35 Aligned_cols=30 Identities=43% Similarity=0.633 Sum_probs=27.1
Q ss_pred eeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 669 ELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 669 ELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
...++||++|.+++|||||||..|.+...+
T Consensus 247 g~~~iD~~~~~~g~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 247 GWGRVDFMLDEDGKPYLLEVNTQPGMTSHS 276 (304)
T ss_pred ceEEEEEEEcCCCCEEEEEecCCCCCCccc
Confidence 567999999999999999999999998755
No 10
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.54 E-value=5.6e-07 Score=93.69 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.|. ..|. -+|+|+.+.. .+.+.+..++. +-.+|+|| ..++.|+|+.++++.+++
T Consensus 86 ~~dK~~~~~~l~----~~gi----~~P~t~~~~~-~~~~~~~~~~~--~~p~vvKP------~~g~~g~gv~~i~~~~~l 148 (277)
T TIGR00768 86 AGDKFLTSQLLA----KAGL----PQPRTGLAGS-PEEALKLIEEI--GFPVVLKP------VFGSWGRLVSLARDKQAA 148 (277)
T ss_pred HhhHHHHHHHHH----HCCC----CCCCEEEeCC-HHHHHHHHHhc--CCCEEEEE------CcCCCCCceEEEcCHHHH
Confidence 445655555443 2342 3688887742 23333333332 23699999 999999999999876544
Q ss_pred C-----------CCCcceeeecccCcccCCCCe-eEEEEEEE
Q psy16955 521 P-----------RKMPLVVQKYLDDPYLINDTK-FDLRLYVL 550 (842)
Q Consensus 521 ~-----------~~~~~VVQkYIenPLLIdGrK-FDLRvYVL 550 (842)
. ...+++||+||+ |.. +|+|++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~lvQe~I~------~~~~~~~rv~v~ 184 (277)
T TIGR00768 149 ETLLEHFEQLNGPQNLFYVQEYIK------KPGGRDIRVFVV 184 (277)
T ss_pred HHHHHHHHHhcccCCcEEEEeeec------CCCCceEEEEEE
Confidence 2 124799999997 333 69999874
No 11
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.48 E-value=1.9e-06 Score=95.03 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=88.7
Q ss_pred HHHHHHhcCCEEec--CC------CCeEEEEcccCCch------hhhccCcC-CeecccCCCCcccchHHHHHHHHHHHH
Q psy16955 392 VRKTILNTGYRLVR--KS------SEWCGTWGKHMKSL------SFRTLKES-QKINHFPGTFQIGRKDRLWKNLLKCMM 456 (842)
Q Consensus 392 Vr~~L~~~GF~~v~--~~------~dW~~~W~~~~k~~------~~~~L~p~-QkVNHFPgs~~LtrKd~L~rnL~rm~k 456 (842)
+.+++++.|...+. .. ..++++-.+..... .|..-.+. -.||.+.....+.+|..+...|.+...
T Consensus 41 l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~ 120 (328)
T PLN02941 41 LEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKL 120 (328)
T ss_pred HHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHcCC
Confidence 55678888986643 11 23555443322111 11111222 256877777778888888777665311
Q ss_pred HcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCC---CCCccEEEEccccccCC-CCcceeeecc
Q psy16955 457 KYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPAS---ARGIGIKVVHKWNQIPR-KMPLVVQKYL 532 (842)
Q Consensus 457 k~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~g---sRGrGI~vi~~l~qI~~-~~~~VVQkYI 532 (842)
. .....=-.|+|+++...-.++.......+-+-..|+|| ..+ +.|+|+.++.+.+.+.. ..++++|+||
T Consensus 121 ~-~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KP------l~g~Gss~gh~m~lv~~~~~L~~l~~p~~lQEfV 193 (328)
T PLN02941 121 S-DGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKP------LVADGSAKSHKMSLAYDQEGLSKLEPPLVLQEFV 193 (328)
T ss_pred c-ccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEee------cccCCCccccceEEecCHHHHHhcCCcEEEEEec
Confidence 0 00111258999998665433432222223345689999 666 99999999988665543 3479999999
Q ss_pred cCcccCCCCeeEEEEEEEE
Q psy16955 533 DDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 533 enPLLIdGrKFDLRvYVLV 551 (842)
.+| | .|+|+||+=
T Consensus 194 nh~----g--~d~RVfVvG 206 (328)
T PLN02941 194 NHG----G--VLFKVYVVG 206 (328)
T ss_pred CCC----C--EEEEEEEEC
Confidence 865 3 599999973
No 12
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.48 E-value=8.4e-07 Score=95.42 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=46.8
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcceeeecccCccc
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLVVQKYLDDPYL 537 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~VVQkYIenPLL 537 (842)
+|.|.++.. .+.+.+.+++. ....+|+|| ..++.|+||+++++..++. ...+++||+||...
T Consensus 114 ~P~t~~~~~-~~~~~~~~~~~-~~~P~VvKP------~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-- 183 (300)
T PRK10446 114 LPVTGIAHS-PDDTSDLIDMV-GGAPLVVKL------VEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-- 183 (300)
T ss_pred CCCEEEeCC-HHHHHHHHHHh-CCCCEEEEE------CCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC--
Confidence 677776532 22222322221 123699999 9999999999997644321 23579999999621
Q ss_pred CCCCeeEEEEEEE
Q psy16955 538 INDTKFDLRLYVL 550 (842)
Q Consensus 538 IdGrKFDLRvYVL 550 (842)
.-.|+|+.|+
T Consensus 184 ---~g~d~rv~vi 193 (300)
T PRK10446 184 ---QGCDIRCLVV 193 (300)
T ss_pred ---CCceEEEEEE
Confidence 2479999875
No 13
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.41 E-value=3.8e-06 Score=91.94 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|++++.+++.+. +|-...++||++|.+++|||||||..|+|...+-
T Consensus 257 ~~~~~~i~~~a~~~~~aL----------------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 257 EELTEKIRELAIKAFKAL----------------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISM 308 (333)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccH
Confidence 345567777776666652 3446889999999999999999999999987653
No 14
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.40 E-value=2.6e-06 Score=82.94 Aligned_cols=87 Identities=25% Similarity=0.381 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
+.+|..+.+.+++ .|. . +|+++.+-. .+++......- ...||+|| ..++.|.||+++++.+++
T Consensus 2 ~~dK~~~~~~~~~----~gv---~-~P~~~~~~~-~~~~~~~~~~~--~~p~vvKp------~~g~gs~gv~~~~~~~~l 64 (184)
T PF13535_consen 2 CNDKYRMRELLKK----AGV---P-VPKTRIVDS-EEELRAFAEDL--GFPFVVKP------VDGSGSRGVFIVHSPEEL 64 (184)
T ss_dssp TCCHHHHHHHHHH----HTS--------EEEECS-HHHHHHHHHHS--SSSEEEEE------SS-STTTT-EEESSHHHH
T ss_pred CCCHHHHHHHHHH----cCc---C-CCCEEEECC-HHHHHHHHHHc--CCCEEEEc------CccccCCCEEEeCCHHHH
Confidence 4577777766553 342 2 787776643 33444443332 25799999 999999999999887665
Q ss_pred CC------------CCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 521 PR------------KMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 521 ~~------------~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
.. ...+|||+||+ |.-|.+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 65 EAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 31 35799999997 77777766543
No 15
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.38 E-value=2.9e-06 Score=89.29 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=46.2
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC------------CCCcceeeeccc
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP------------RKMPLVVQKYLD 533 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~------------~~~~~VVQkYIe 533 (842)
+|.|+.+.. ..++.....+. +..+|+|| ..|+.|+|+.++.+.+++. ....+|||+||.
T Consensus 102 ~P~t~~~~~-~~~~~~~~~~~--~~P~vvKP------~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~ 172 (280)
T TIGR02144 102 TPRTYLAFD-REAALKLAEAL--GYPVVLKP------VIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYIN 172 (280)
T ss_pred CCCeEeeCC-HHHHHHHHHHc--CCCEEEEE------CcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccC
Confidence 588877642 22233322221 23599999 8899999999998755431 124689999997
Q ss_pred CcccCCCCeeEEEEEEE
Q psy16955 534 DPYLINDTKFDLRLYVL 550 (842)
Q Consensus 534 nPLLIdGrKFDLRvYVL 550 (842)
. .-.|+|++|+
T Consensus 173 ~------~~~d~~v~vi 183 (280)
T TIGR02144 173 K------PGRDIRVFVI 183 (280)
T ss_pred C------CCCceEEEEE
Confidence 3 2368998875
No 16
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.38 E-value=5.4e-06 Score=91.11 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|++++.+++.+. +|..+.++||++|+++++||+|||..|++...+.
T Consensus 266 ~~~~~~i~~~a~~~~~~L----------------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~ 317 (343)
T PRK14568 266 AEERSRVQETAKAIYRAL----------------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSR 317 (343)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCH
Confidence 345566777776665542 3568899999999999999999999999987653
No 17
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.38 E-value=3.9e-06 Score=86.49 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=81.6
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceE--
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRI-- 559 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRI-- 559 (842)
-.+|+|| ..+.-+.||.++++.+++. -...++|++||. |+-|-+-+.- .+..++
T Consensus 34 ~P~~VKP------~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~vl~----~~~~~~~~ 97 (203)
T PF07478_consen 34 FPLFVKP------ASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVGVLG----NGEPRVLP 97 (203)
T ss_dssp SSEEEEE------SSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEEEEE----SSSTEEEE
T ss_pred CCEEEEE------CCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEEEEe----cCCcccCc
Confidence 4799999 8888899999998866552 256899999996 8876665422 111222
Q ss_pred ---EEEcCceEeeecccCCCCCCcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHH
Q psy16955 560 ---YLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQD 636 (842)
Q Consensus 560 ---YlY~eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~ 636 (842)
.++..++..+. .+|... + +-+.+.+.. .+ .+.+.+
T Consensus 98 ~~ei~~~~~~~d~~-~Ky~~~-----~---~~~~~~~pa--------------------------------~l-~~~~~~ 135 (203)
T PF07478_consen 98 PVEIVFPSEFYDYE-AKYQPA-----D---SETEYIIPA--------------------------------DL-SEELQE 135 (203)
T ss_dssp EEEEEESSSEEEHH-HHHSGC-----C---SCEEEESS---------------------------------SS--HHHHH
T ss_pred eEEEEcCCCceehh-heeccC-----C---CceEEEecC--------------------------------CC-CHHHHH
Confidence 22333222221 122100 0 000000000 11 245667
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChh
Q psy16955 637 SIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700 (842)
Q Consensus 637 ~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Spl 700 (842)
+|+++..++..+. +|-..-.+||.+|++++||+||||..|+|...+.+
T Consensus 136 ~i~~~a~~a~~~l----------------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 136 KIKEIAKKAFKAL----------------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp HHHHHHHHHHHHT----------------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred HHHHHHHHHHHHH----------------cCCCceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 7888887776652 45567899999999999999999999999876643
No 18
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.37 E-value=1e-05 Score=86.81 Aligned_cols=141 Identities=17% Similarity=0.311 Sum_probs=81.1
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIY 560 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIY 560 (842)
.-.||+|| ..++-|.||.++++..++. ....++||+||+ |+ ++++-|+...-++ ++
T Consensus 125 ~~P~vvKP------~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~~-~v- 188 (299)
T PRK14571 125 GYPCVVKP------RREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKGF-EV- 188 (299)
T ss_pred CCCEEEec------CCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCCe-ee-
Confidence 35799999 8999999999998866542 235789999996 65 6766666542111 11
Q ss_pred EEcCceEeeecccCCCCCCcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHH
Q psy16955 561 LYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVD 640 (842)
Q Consensus 561 lY~eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~Ikd 640 (842)
+. .+. .... .. .+-+-++|. ... ..... .. .++ +.+.++|++
T Consensus 189 -l~--~~e-----~~~~-~~---~~~~~~k~~---------~g~-------~~~~~--------p~-~l~-~~~~~~i~~ 230 (299)
T PRK14571 189 -LP--ILE-----LRPK-RR---FYDYVAKYT---------KGE-------TEFIL--------PA-PLN-PEEERLVKE 230 (299)
T ss_pred -ec--eEE-----EecC-CC---ccccccccC---------CCC-------eeEEe--------CC-CCC-HHHHHHHHH
Confidence 10 000 0000 00 000001110 000 00000 00 111 345566777
Q ss_pred HHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChh
Q psy16955 641 VVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700 (842)
Q Consensus 641 iIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Spl 700 (842)
++.+++.+. +|....++||++| +++||+||||..|++...+.+
T Consensus 231 ~a~~~~~~l----------------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 231 TALKAFVEA----------------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDL 273 (299)
T ss_pred HHHHHHHHh----------------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHH
Confidence 766665542 3456889999998 579999999999999877643
No 19
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.26 E-value=1.8e-05 Score=85.36 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 634 LQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 634 Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+..+|+++..+++.+. +|-...++||++|++++||+||||..|+|..++-
T Consensus 223 ~~~~i~~~a~~~~~~L----------------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~ 272 (296)
T PRK14569 223 KELEVRQLAKKAYDLL----------------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSL 272 (296)
T ss_pred HHHHHHHHHHHHHHHh----------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCH
Confidence 3456666666655542 3557889999999999999999999999987653
No 20
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.25 E-value=1.6e-05 Score=85.35 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
.+.++|++++.+.+.+. ++-..+++||++|.+++||+||||..|++...+
T Consensus 242 ~~~~~i~~~a~~~~~~l----------------g~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 242 ELEEKIKELALKAYKAL----------------GCRGLARVDFFLDEEGEIYLNEINTIPGMTAIS 291 (315)
T ss_pred HHHHHHHHHHHHHHHHh----------------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCCcc
Confidence 34556777776665542 223678999999999999999999999998765
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.21 E-value=2.9e-05 Score=85.67 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHh------H
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAV------K 705 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~V------K 705 (842)
+.+.++|++++.+++.+. +|-...++||+++ +++||++|||..|+|...+-+-... .
T Consensus 272 ~~~~~~i~~~a~~~~~~L----------------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~ 334 (347)
T PRK14572 272 DQEMKRVQELAIRAHESL----------------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQQAKAAGINM 334 (347)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCH
Confidence 445667777776655442 3557889999997 5899999999999998776443211 3
Q ss_pred HHHHHHHHHHc
Q psy16955 706 GPLVQDLFNIV 716 (842)
Q Consensus 706 ~~LI~D~L~L~ 716 (842)
.+||+.+++++
T Consensus 335 ~~l~~~ii~~a 345 (347)
T PRK14572 335 EEVFTDLIEIG 345 (347)
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 22
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.2e-05 Score=88.44 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=101.3
Q ss_pred eecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCch--hHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCC
Q psy16955 431 KINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPG--DDKRLRASWERNCGNIKWIVKPIHFWFQPASARG 508 (842)
Q Consensus 431 kVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~--d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRG 508 (842)
.||..-....-.+|-.....+.+ .| -.+|.|.+.-. +...|.+.. .+..-|+|| ..|+.|
T Consensus 107 viN~p~~i~~~~nK~~~~~~l~~----~~----ipvP~T~i~~~~~~~~~~~~~~----~g~pvVlKp------~~Gs~G 168 (318)
T COG0189 107 VINDPQSIRRCRNKLYTTQLLAK----AG----IPVPPTLITRDPDEAAEFVAEH----LGFPVVLKP------LDGSGG 168 (318)
T ss_pred EECCHHHHHhhhhHHHHHHHHHh----cC----CCCCCEEEEcCHHHHHHHHHHh----cCCCEEEee------CCCCCc
Confidence 44543333334455554444432 12 36899988855 333333322 235699999 999999
Q ss_pred ccEEEEcccc-ccC-------C--CCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCC
Q psy16955 509 IGIKVVHKWN-QIP-------R--KMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANS 578 (842)
Q Consensus 509 rGI~vi~~l~-qI~-------~--~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~ 578 (842)
+||+++++.+ ++. . ...++||+||..+. =|.|.+|++ +..-+=+| .+.|.+...
T Consensus 169 ~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~------~~~rrivv~---~~~~~~~y--~~~R~~~~~----- 232 (318)
T COG0189 169 RGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAK------RDDRRVLVG---GGEVVAIY--ALARIPASG----- 232 (318)
T ss_pred cceEEecCCChhHHHHHHHHhccccceEehhhhcCccc------CCcEEEEEe---CCEEeEEe--eeccccCCC-----
Confidence 9999999877 442 1 24699999998543 255666655 33222223 555544321
Q ss_pred CcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhh
Q psy16955 579 ETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTR 658 (842)
Q Consensus 579 ~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~ 658 (842)
++ =||.+..... ....+=++++++++++.-+.
T Consensus 233 -~~------R~N~a~Gg~~--------------------------------e~~~l~~e~~elA~kaa~~l--------- 264 (318)
T COG0189 233 -DF------RSNLARGGRA--------------------------------EPCELTEEEEELAVKAAPAL--------- 264 (318)
T ss_pred -Cc------eeeccccccc--------------------------------cccCCCHHHHHHHHHHHHHh---------
Confidence 11 1444322110 01112244555555544332
Q ss_pred hcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCC
Q psy16955 659 ANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHS 696 (842)
Q Consensus 659 ~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s 696 (842)
-..++|+||+.+ +...+++|||.+|..-.
T Consensus 265 --------Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 265 --------GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred --------CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 247899999999 77799999999997754
No 23
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.14 E-value=3.6e-05 Score=85.98 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecC-CCceEEEEeecCCCCCCCChhhHHh------
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDS-KLKPWLLEVNISPSLHSSSPLDLAV------ 704 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDe-dLKPWLLEVN~sPSL~s~SplD~~V------ 704 (842)
+.+.++|++++.++..+. +|..+..+||++|. +++|||+|||..|+|...|.+-...
T Consensus 271 ~e~~~~i~~~A~~~~~aL----------------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~ 334 (364)
T PRK14570 271 TKHLLDIKEYAFLTYKNL----------------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQ 334 (364)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCC
Confidence 445677888877776653 56689999999996 5999999999999998766432211
Q ss_pred HHHHHHHHHHHc
Q psy16955 705 KGPLVQDLFNIV 716 (842)
Q Consensus 705 K~~LI~D~L~L~ 716 (842)
...||..+++++
T Consensus 335 ~~~li~~li~~a 346 (364)
T PRK14570 335 YKSLVDNLIDLA 346 (364)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 24
>PRK05246 glutathione synthetase; Provisional
Probab=98.04 E-value=2.5e-05 Score=85.07 Aligned_cols=71 Identities=27% Similarity=0.372 Sum_probs=48.6
Q ss_pred eeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc--------c--CCCCcceeeecccC
Q psy16955 465 FTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ--------I--PRKMPLVVQKYLDD 534 (842)
Q Consensus 465 FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q--------I--~~~~~~VVQkYIen 534 (842)
++|+|.+.. +.+.+.+.+++. +..|+|| ..|++|+||+.+...+. + ....+++||+||..
T Consensus 134 ~vP~T~~~~-~~~~~~~~~~~~---~~vVlKP------~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~ 203 (316)
T PRK05246 134 LMPPTLVTR-DKAEIRAFRAEH---GDIILKP------LDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPE 203 (316)
T ss_pred cCCCEEEeC-CHHHHHHHHHHC---CCEEEEE------CCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEecccc
Confidence 799998764 333444444432 2599999 99999999999954221 1 12468999999973
Q ss_pred cccCCCCeeEEEEEEE
Q psy16955 535 PYLINDTKFDLRLYVL 550 (842)
Q Consensus 535 PLLIdGrKFDLRvYVL 550 (842)
+- + -|+|++|+
T Consensus 204 ~~--~---~D~Rv~vv 214 (316)
T PRK05246 204 IK--E---GDKRILLV 214 (316)
T ss_pred CC--C---CCEEEEEE
Confidence 22 2 39998875
No 25
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.99 E-value=3.7e-05 Score=76.03 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=17.3
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCCC--Ccceeeeccc
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRK--MPLVVQKYLD 533 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~--~~~VVQkYIe 533 (842)
...||+|| ..|+.|.||+++++.+++... ...|+|+||+
T Consensus 31 ~~~~viKp------~~G~Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKP------RDGAGGEGIRIVDSEDELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEE------SS-------B--SS--TTE-------EEEE---
T ss_pred CCcEEEEe------CCCCCCCCeEEECCchhhccccccceEEeeeeC
Confidence 56899999 999999999999988766432 2239999997
No 26
>PLN02257 phosphoribosylamine--glycine ligase
Probab=97.91 E-value=0.00022 Score=81.57 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=40.7
Q ss_pred ceeeeeeeEEec-CCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccC
Q psy16955 667 SYELFGIDILLD-SKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHL 720 (842)
Q Consensus 667 cFELfGfDfLLD-edLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~ 720 (842)
...++.+|||++ +++.|||||+|..|.......+-..+...|++-++.++.=.+
T Consensus 264 y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l 318 (434)
T PLN02257 264 FVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGEL 318 (434)
T ss_pred cEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCC
Confidence 468899999999 788999999999999864444444466677776666665443
No 27
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.89 E-value=0.00027 Score=82.99 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCEEecCC-C--CeEEEEcccCCchhhhccCcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCee
Q psy16955 390 VVVRKTILNTGYRLVRKS-S--EWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFT 466 (842)
Q Consensus 390 ~lVr~~L~~~GF~~v~~~-~--dW~~~W~~~~k~~~~~~L~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~Fl 466 (842)
..|.++..+.|...+.-. . .+.+.|+.... ..+. ..--+|.--......+|....+.|.+ .|- =+
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~--~~~~--s~~~~~s~~ai~~~~DK~~tk~lL~~----aGI----pV 312 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSI--RCRE--SLSELTSAVAMSLCDDKRLTRRLVSE----AGL----QV 312 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCCceEE--EEEe--ccCCCCCHHHHHHhcCHHHHHHHHHH----cCc----CC
Confidence 778899999998765322 2 22223332111 0000 00011111111223566665554432 342 27
Q ss_pred eccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEE-EccccccC--------CCCcceeeecccCccc
Q psy16955 467 PRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKV-VHKWNQIP--------RKMPLVVQKYLDDPYL 537 (842)
Q Consensus 467 P~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~v-i~~l~qI~--------~~~~~VVQkYIenPLL 537 (842)
|.++.+. +.+.+.+..++.+ ..|+|| ..|++|+||.+ +++.+++. ....++||+||.
T Consensus 313 P~~~~~~-~~~~~~~~~~~~G---~vVVKP------~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~---- 378 (547)
T TIGR03103 313 PEQQLAG-NGEAVEAFLAEHG---AVVVKP------VRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP---- 378 (547)
T ss_pred CCEEEEC-CHHHHHHHHHHhC---CEEEEE------CCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc----
Confidence 8887764 3333444444333 389999 99999999997 67655542 234789999996
Q ss_pred CCCCeeEEEEEEE
Q psy16955 538 INDTKFDLRLYVL 550 (842)
Q Consensus 538 IdGrKFDLRvYVL 550 (842)
| .|+|++|+
T Consensus 379 --G--~d~Rv~Vi 387 (547)
T TIGR03103 379 --G--EDLRLVVI 387 (547)
T ss_pred --C--CeEEEEEE
Confidence 4 48998764
No 28
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.86 E-value=0.00043 Score=74.57 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=57.7
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
...+|..+.+.+.+ .|. =.|+|+.+. +.+++.+.+....-+..+|+|| ..++.|+|+.++++.++
T Consensus 108 ~~~dK~~~~~~l~~----~gi----p~p~~~~~~-~~~~~~~~~~~~~~~~P~viKP------~~g~~s~gv~~v~~~~e 172 (326)
T PRK12767 108 ICNDKWLTYEFLKE----NGI----PTPKSYLPE-SLEDFKAALAKGELQFPLFVKP------RDGSASIGVFKVNDKEE 172 (326)
T ss_pred HHhcHHHHHHHHHH----cCC----CCCCEEccc-CHHHHHhhhhcccCCCCEEEEe------CCCCCccCeEEeCCHHH
Confidence 35677777665543 342 257887653 3333433211112345799999 89999999999988665
Q ss_pred cC----CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 520 IP----RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 520 I~----~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
+. ...++|||+||. |.-+++.+|+
T Consensus 173 l~~~~~~~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 173 LEFLLEYVPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred HHHHHHhCCCeEEEeccC------CceEEEEEEE
Confidence 42 345899999995 7777766544
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.83 E-value=0.00068 Score=74.58 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=50.5
Q ss_pred cccCCCC---cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC-CC
Q psy16955 433 NHFPGTF---QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA-RG 508 (842)
Q Consensus 433 NHFPgs~---~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs-RG 508 (842)
..+|+.. ...+|..+.+.+. +.|-. .|+++.+.. .+++.+..++- +-.+|+|| ..++ .|
T Consensus 85 ~~~p~~~~~~~~~dK~~~k~~l~----~~gip----~p~~~~~~~-~~~~~~~~~~~--g~P~vvKp------~~~g~~g 147 (352)
T TIGR01161 85 KLFPSPDALAIIQDRLTQKQFLQ----KLGLP----VPPFLVIKD-EEELDAALQEL--GFPVVLKA------RTGGYDG 147 (352)
T ss_pred eECCCHHHHHHhcCHHHHHHHHH----HcCCC----CCCccEeCC-HHHHHHHHHHc--CCCEEEEe------CCCCCCC
Confidence 3456543 2456666654443 34532 456555542 23333333221 34699999 7765 79
Q ss_pred ccEEEEccccccC------CCCcceeeeccc
Q psy16955 509 IGIKVVHKWNQIP------RKMPLVVQKYLD 533 (842)
Q Consensus 509 rGI~vi~~l~qI~------~~~~~VVQkYIe 533 (842)
+|++++++.+++. ....+|||+||+
T Consensus 148 ~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 148 RGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999999876652 234799999996
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=97.62 E-value=0.0025 Score=72.73 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.2
Q ss_pred ceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHc
Q psy16955 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIV 716 (842)
Q Consensus 667 cFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~ 716 (842)
+..++.+||||+++++||+||+|..|.-.....+-..+...|++-++..+
T Consensus 270 ~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~ 319 (426)
T PRK13789 270 YRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAS 319 (426)
T ss_pred ceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHH
Confidence 56899999999999999999999999765444444444445555444443
No 31
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=97.61 E-value=0.00024 Score=77.03 Aligned_cols=213 Identities=15% Similarity=0.202 Sum_probs=108.5
Q ss_pred cccCCCCcccchHHHHHHHHHHHHHcCCCCCC---eeeccccCc---hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC
Q psy16955 433 NHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFG---FTPRTYVLP---GDDKRLRASWERNCGNIKWIVKPIHFWFQPASA 506 (842)
Q Consensus 433 NHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~---FlP~TfiLP---~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs 506 (842)
|.---...+..|-.+.+.+.. +|-.... -.+..|... .+.+.|.+...+. ....+++|| ..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~----~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~viKP------~~G~ 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD----YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH-APDRFVIKP------ANGS 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHH----hcCCCCceEEeccceEEecccccCHHHHHHHHHhc-cCCcEEEEe------CCCC
Confidence 433334457788877665543 3321100 123333222 2445555555331 226799999 9999
Q ss_pred CCccEEEEccccc------c-------CCCC--cceeeecccCc-cc--CC-CCeeEEEEEEEEeecCCceEEEEcCceE
Q psy16955 507 RGIGIKVVHKWNQ------I-------PRKM--PLVVQKYLDDP-YL--IN-DTKFDLRLYVLVTSFNPLRIYLYDNGLV 567 (842)
Q Consensus 507 RGrGI~vi~~l~q------I-------~~~~--~~VVQkYIenP-LL--Id-GrKFDLRvYVLVTS~dPLRIYlY~eGLV 567 (842)
+|+||.++...+. + .... .+|||++|..= .+ +. .--=+||+.+++.. -.+++ -..+.
T Consensus 85 ~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~---~~~~~-~~a~l 160 (285)
T PF14397_consen 85 GGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD---GEVEV-LMAML 160 (285)
T ss_pred CccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC---CeeEE-EEEEE
Confidence 9999999976541 1 0112 89999999742 22 22 23348999877654 22222 12456
Q ss_pred eeecccCCCCCCcccC--------cceeecccc-cccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHH
Q psy16955 568 RFASVKYSANSETLQD--------RYMHLTNYS-INKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSI 638 (842)
Q Consensus 568 RfAt~kYs~~~~nl~d--------~~~HLTNyS-INK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~I 638 (842)
|+....-. .+|+.. ....|..+. .......|....|. |. .+ . |+.. --|++|
T Consensus 161 Rlg~~~~~--~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdT----g~--~~---~-------g~~I-P~w~~~ 221 (285)
T PF14397_consen 161 RLGRGGSG--VDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDT----GA--PF---S-------GFQI-PNWDEI 221 (285)
T ss_pred EeCCCCCc--ccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCC----CC--cc---C-------CccC-CCHHHH
Confidence 77632221 111110 000122211 11111111111110 00 00 0 1111 136666
Q ss_pred HHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecC--CCCCC
Q psy16955 639 VDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNIS--PSLHS 696 (842)
Q Consensus 639 kdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~s--PSL~s 696 (842)
.+++.+.-.. ...+..+|.||.||+++ |.|||+|.. |.+..
T Consensus 222 ~~l~~~~~~~----------------~p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~ 264 (285)
T PF14397_consen 222 LELAKEAHRK----------------FPGLGYIGWDVAITEDG-PVLLEGNARWDPGLMI 264 (285)
T ss_pred HHHHHHHHHH----------------CCCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHh
Confidence 6666443222 12357899999999999 999999999 88863
No 32
>PRK12458 glutathione synthetase; Provisional
Probab=97.55 E-value=0.00058 Score=75.66 Aligned_cols=96 Identities=23% Similarity=0.295 Sum_probs=59.1
Q ss_pred eecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCcc
Q psy16955 431 KINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIG 510 (842)
Q Consensus 431 kVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrG 510 (842)
.+|+-.....-..|..+.. +.. ..+|.|++.. +.+.+...+++.+ ....|+|| ..|+.|+|
T Consensus 117 viN~p~~i~~~~dK~~~~~--------l~~---~~vP~T~v~~-~~~~~~~~~~~~~-~~pvVvKP------l~G~gG~g 177 (338)
T PRK12458 117 VVNDPDGLRIANNKLYFQS--------FPE---EVRPTTHISR-NKEYIREFLEESP-GDKMILKP------LQGSGGQG 177 (338)
T ss_pred EecCHHHHHhccCHHHHHh--------hcc---CCCCCEEEeC-CHHHHHHHHHHcC-CCeEEEEE------CCCCCccC
Confidence 4566544444456654321 111 3699998764 2333444443321 12389999 99999999
Q ss_pred EEEEccccc-----c----CCCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 511 IKVVHKWNQ-----I----PRKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 511 I~vi~~l~q-----I----~~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
|++++..+. + ....+++||+||..+ ...|+|++|+
T Consensus 178 V~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~-----~~gDiRv~vv 221 (338)
T PRK12458 178 VFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGA-----EEGDVRILLL 221 (338)
T ss_pred eEEEecCChhhHHHHHHHHhhCCCEEEEEcccCC-----CCCCEEEEEE
Confidence 999975432 1 134589999999732 2369999863
No 33
>PRK07206 hypothetical protein; Provisional
Probab=97.51 E-value=0.0013 Score=73.74 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=53.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCC-cceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCG-NIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~-~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
..+|..+.+.+.+ .|- -.|+++.+. +.+++....+..+- +..+|+|| ..++.|+||+++++.++
T Consensus 106 ~~dK~~~r~~l~~----~gi----~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP------~~g~gs~gv~~v~~~~e 170 (416)
T PRK07206 106 RRNKAEMINALAE----AGL----PAARQINTA-DWEEAEAWLRENGLIDRPVVIKP------LESAGSDGVFICPAKGD 170 (416)
T ss_pred hhCHHHHHHHHHH----cCC----CcccEEecC-CHHHHHHHHHhcCCCCCCEEEeC------CCCCCCCCEEEeCCHHH
Confidence 4577776655543 342 256766654 22333333332221 33799999 99999999999998665
Q ss_pred cC---------------CCCcceeeecccCcccCCCCeeEEEE
Q psy16955 520 IP---------------RKMPLVVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 520 I~---------------~~~~~VVQkYIenPLLIdGrKFDLRv 547 (842)
+. ....+|||+||+ |.-|.+-+
T Consensus 171 l~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~ 207 (416)
T PRK07206 171 WKHAFNAILGKANKLGLVNETVLVQEYLI------GTEYVVNF 207 (416)
T ss_pred HHHHHHHHHhccccCCCCCCeEEEEEccc------cEEEEEEE
Confidence 41 125799999996 66665543
No 34
>PRK06849 hypothetical protein; Provisional
Probab=97.50 E-value=0.0024 Score=71.20 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+.+|..+.+.+.+ .|- =+|+|+.+-. .+++.+...+ ..+..+|+|| ..++.|.|+.++.+...
T Consensus 113 ~~~DK~~~~~~~~~----~Gi----pvP~t~~v~~-~~~l~~~~~~-~~~~P~vlKP------~~~~~~~~v~~~~~~~~ 176 (389)
T PRK06849 113 LLHNKWEFAEQARS----LGL----SVPKTYLITD-PEAIRNFMFK-TPHTPYVLKP------IYSRFVRRVDLLPKEAA 176 (389)
T ss_pred HhhCHHHHHHHHHH----cCC----CCCCEEEeCC-HHHHHHHhhc-CCCCcEEEEe------CcccCCCeEEEecCHHH
Confidence 36688887765543 342 2688987632 2333332221 1245799999 88888999998776433
Q ss_pred cC-----CCCcceeeecccCcccCCCCeeEEEE
Q psy16955 520 IP-----RKMPLVVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 520 I~-----~~~~~VVQkYIenPLLIdGrKFDLRv 547 (842)
+. ...++|||+||. |..+.+..
T Consensus 177 l~~~~~~~~~~~ivQe~I~------G~e~~~~~ 203 (389)
T PRK06849 177 LKELPISKDNPWVMQEFIQ------GKEYCSYS 203 (389)
T ss_pred hcccccCCCCCeEEEEEec------CCeEEEEE
Confidence 32 234699999997 66655543
No 35
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.50 E-value=0.0037 Score=76.58 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|+++..++..+. +|-.+..+||++|++++|||+|||..|.|...|.
T Consensus 712 ~~~~~~i~~~a~~~~~aL----------------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~ 763 (809)
T PRK14573 712 KESQEQVLELAERIYRLL----------------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASP 763 (809)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccH
Confidence 456677888777766653 4678999999999999999999999999987663
No 36
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.49 E-value=0.0012 Score=72.09 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=48.6
Q ss_pred CeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc-cc---------CCCCcceeeeccc
Q psy16955 464 GFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN-QI---------PRKMPLVVQKYLD 533 (842)
Q Consensus 464 ~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~-qI---------~~~~~~VVQkYIe 533 (842)
..+|.|.+.. +...+.+.+++.+ ..|+|| ..|+.|+||+.++..+ .+ ....++++|+||.
T Consensus 132 ~~vP~T~v~~-~~~~~~~~~~~~g---~vVvKP------l~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~ 201 (312)
T TIGR01380 132 KVIPPTLVTR-DKAEIRAFLAEHG---DIVLKP------LDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLP 201 (312)
T ss_pred CCCCCEEEeC-CHHHHHHHHHHcC---CEEEEE------CCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccc
Confidence 3699998653 3344444444322 599999 9999999999886522 11 1245899999997
Q ss_pred CcccCCCCeeEEEEEEE
Q psy16955 534 DPYLINDTKFDLRLYVL 550 (842)
Q Consensus 534 nPLLIdGrKFDLRvYVL 550 (842)
. +.+ -|+|++|+
T Consensus 202 ~---~~~--~D~Rv~vv 213 (312)
T TIGR01380 202 E---IKE--GDKRILLI 213 (312)
T ss_pred c---ccC--CCEEEEEE
Confidence 3 222 49999875
No 37
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.002 Score=71.25 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecC-CCceEEEEeecCCCCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDS-KLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDe-dLKPWLLEVN~sPSL~s~S 698 (842)
+.+-++|+++..++..+. +|-.+-|+||++|+ .+++||+|||++|.|...+
T Consensus 241 ~~~~~~i~~lA~~a~~al----------------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~s 292 (317)
T COG1181 241 DEIHEEIKELALRAYKAL----------------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMS 292 (317)
T ss_pred HHHHHHHHHHHHHHHHhc----------------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccc
Confidence 566778888887776663 46688899999999 9999999999999987655
No 38
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.45 E-value=0.0018 Score=71.53 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
+.+.++|.+++.+++.+. ++...+++||+++++ .|||+|||..|.-.
T Consensus 229 ~~~~~~i~~~a~~~~~~l----------------~~~G~~~ie~~~~~~-~~~viEinpR~~~~ 275 (380)
T TIGR01142 229 EKALEEAQRIAKRITDAL----------------GGYGLFGVELFVKGD-EVIFSEVSPRPHDT 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCcceEEEEEEEECC-cEEEEEeecCCCCC
Confidence 444566777766655542 235789999999876 79999999999854
No 39
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=97.45 E-value=0.004 Score=71.03 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccc-cCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTY-VLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tf-iLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
...+|..+.+.+. +.|- . .|.++ .+..+.+++....++- +-.+|+|| ..++.|+|+.++++.+
T Consensus 112 ~~~DK~~~r~~l~----~~gi---p-~pp~~~~~~~~~~e~~~~~~~i--g~PvvvKP------~~g~gs~Gv~~v~~~~ 175 (449)
T TIGR00514 112 LMGDKVSAIETMK----KAGV---P-CVPGSDGLVEDEEENVRIAKRI--GYPVIIKA------TAGGGGRGMRVVREPD 175 (449)
T ss_pred HhCCHHHHHHHHH----HCCC---C-CCCCcccCcCCHHHHHHHHHHh--CCCEEEEe------CCCCCCCccEEECCHH
Confidence 3567777665554 3442 1 23332 3333444443333321 34699999 8999999999999866
Q ss_pred ccC--------------CCCcceeeeccc
Q psy16955 519 QIP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 519 qI~--------------~~~~~VVQkYIe 533 (842)
++. ....++||+||+
T Consensus 176 el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (449)
T TIGR00514 176 ELVKSISMTRAEAKAAFGNDGVYIEKYIE 204 (449)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 542 234689999997
No 40
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.38 E-value=0.0025 Score=71.45 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=37.1
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeecccCcccCCCCeeEEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLDDPYLINDTKFDLRLY 548 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIenPLLIdGrKFDLRvY 548 (842)
+-..|+|| ..++.|+|+.++.+.+++. ....+|||+||+ |.-|.+.++
T Consensus 102 g~PvVvKp------~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~ 159 (379)
T PRK13790 102 ELPVVVKK------DGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTF 159 (379)
T ss_pred CCCEEEEe------CCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEE
Confidence 34789999 9999999999998865542 134789999996 777777554
No 41
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.38 E-value=0.0075 Score=68.10 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=38.5
Q ss_pred eeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCC
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLP 721 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p 721 (842)
...+.+||++++++ |||||||..+.-.....+...+...++.-++.++.-.++
T Consensus 265 ~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~ 317 (420)
T PRK00885 265 TGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLD 317 (420)
T ss_pred EeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCC
Confidence 37789999999876 999999999864333344455566777777777776554
No 42
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.33 E-value=0.015 Score=64.88 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=50.2
Q ss_pred ecccCCCCc---ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCC-CC
Q psy16955 432 INHFPGTFQ---IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPAS-AR 507 (842)
Q Consensus 432 VNHFPgs~~---LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~g-sR 507 (842)
.+-+|+... ..+|..+.+.+. +.|-. .|.++.+. +.+++.+..++- +-.+|+|| ..+ +-
T Consensus 86 ~~~~p~~~~~~~~~dK~~~k~~l~----~~Gip----~p~~~~v~-s~~~l~~~~~~~--g~P~vlKp------~~~g~~ 148 (372)
T PRK06019 86 VPVPPGPDALAIAQDRLTEKQFLD----KLGIP----VAPFAVVD-SAEDLEAALADL--GLPAVLKT------RRGGYD 148 (372)
T ss_pred CeeCcCHHHHHHhcCHHHHHHHHH----HCCCC----CCCceEeC-CHHHHHHHHHHc--CCcEEEEe------CCCCcC
Confidence 344565443 345555544443 34533 34444432 334444433332 35799999 764 58
Q ss_pred CccEEEEccccccC------CCCcceeeeccc
Q psy16955 508 GIGIKVVHKWNQIP------RKMPLVVQKYLD 533 (842)
Q Consensus 508 GrGI~vi~~l~qI~------~~~~~VVQkYIe 533 (842)
|+|++++++.+++. ...++|||+||.
T Consensus 149 g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 149 GKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999998866552 245899999996
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.30 E-value=0.0018 Score=78.68 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=54.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEE-Eccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKV-VHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~v-i~~l~q 519 (842)
.++|....+.|. ..|-. +|+++... +.+++.+..++- +-..|+|| ..++.|+|+.+ +++.++
T Consensus 212 ~~DK~~tk~lL~----~~GIP----vP~~~~v~-s~~~a~~~a~~i--G~PvVVKP------~~G~~G~GV~~~v~~~~e 274 (727)
T PRK14016 212 ACDKELTKRLLA----AAGVP----VPEGRVVT-SAEDAWEAAEEI--GYPVVVKP------LDGNHGRGVTVNITTREE 274 (727)
T ss_pred hCCHHHHHHHHH----HCCcC----CCCeeEeC-CHHHHHHHHHHc--CCCEEEEE------CCCCCCCceEEecCCHHH
Confidence 556776655444 34422 56665442 333344443332 34689999 99999999998 776555
Q ss_pred cC--------CCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 520 IP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 520 I~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
+. ....+|||+||. | .|+|++|+
T Consensus 275 l~~a~~~a~~~~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 275 IEAAYAVASKESSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred HHHHHHHHHHhCCeEEEEEecC------C--ceEEEEEE
Confidence 42 236799999995 4 48898764
No 44
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.29 E-value=0.0064 Score=68.92 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeecc--ccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRT--YVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~T--fiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
..+|..+.+.+. +.|-. .|.+ +.+ .+..++....++- +-.+|+|| ..++.|+|+.++++.+
T Consensus 113 ~~dK~~~k~~l~----~~gIp----~p~~~~~~~-~~~~e~~~~~~~~--~~P~VvKP------~~g~gs~Gv~iv~~~~ 175 (450)
T PRK06111 113 MGSKIEARRAMQ----AAGVP----VVPGITTNL-EDAEEAIAIARQI--GYPVMLKA------SAGGGGIGMQLVETEQ 175 (450)
T ss_pred hCCHHHHHHHHH----HCCCC----CCCCcCcCc-CCHHHHHHHHHHh--CCCEEEEe------CCCCCCceEEEECCHH
Confidence 457777665544 34422 2222 223 3444443333322 34699999 9999999999999866
Q ss_pred ccC--------------CCCcceeeeccc
Q psy16955 519 QIP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 519 qI~--------------~~~~~VVQkYIe 533 (842)
++. ....++||+||+
T Consensus 176 el~~a~~~~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 176 ELTKAFESNKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEcccC
Confidence 542 234689999996
No 45
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.27 E-value=0.0062 Score=68.57 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=36.1
Q ss_pred ceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccC
Q psy16955 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHL 720 (842)
Q Consensus 667 cFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~ 720 (842)
+..++.+||++++++ |||+|||..++-.....+...+...|+.-++.+++-.+
T Consensus 266 ~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~l 318 (423)
T TIGR00877 266 YKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKL 318 (423)
T ss_pred cEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCCC
Confidence 457899999999887 99999999997432222222233566666666666543
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.26 E-value=0.0057 Score=77.62 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+++|....+.+. +.| ....|-+.....+.+++....++- +-.+|+|| ..++.|+||+++++.++
T Consensus 112 ~~~DK~~ar~la~----~~G---VPvpp~t~~~v~~~eea~~~ae~i--GyPvIVKP------~~GGGGrG~riV~~~eE 176 (1143)
T TIGR01235 112 QLGDKVAARNLAI----KAG---VPVVPGTDGPPETMEEVLDFAAAI--GYPVIIKA------SWGGGGRGMRVVRSEAD 176 (1143)
T ss_pred HhcCHHHHHHHHH----HcC---CCCCCCcccCcCCHHHHHHHHHHc--CCCEEEEE------CCCCCCCccEEeCCHHH
Confidence 3567777655443 334 233444433334444444444332 34699999 99999999999998665
Q ss_pred cC--------------CCCcceeeecccCcccCCCCeeEEEEEEEEe
Q psy16955 520 IP--------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVT 552 (842)
Q Consensus 520 I~--------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVT 552 (842)
+. ....++||+||+.| + ++.+-++..
T Consensus 177 L~~a~~~a~~ea~~~fg~~~vlIEefI~g~-----r--eIeVqVlgD 216 (1143)
T TIGR01235 177 VADAFQRAKSEAKAAFGNDEVYVEKLIERP-----R--HIEVQLLGD 216 (1143)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-----e--EEEEEEEEe
Confidence 52 13568999999753 2 455555543
No 47
>PRK08462 biotin carboxylase; Validated
Probab=97.25 E-value=0.006 Score=69.37 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=48.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+. +.|- ...|.++.+-.+.+++....++ -+-.+|+|| ..++.|+|+.++++.+++
T Consensus 115 ~~dK~~~r~~l~----~~gI---p~pp~~~~~~~~~~~~~~~~~~--~g~PvvvKP------~~g~gs~Gv~~v~~~~eL 179 (445)
T PRK08462 115 MSDKSKAKEVMK----RAGV---PVIPGSDGALKSYEEAKKIAKE--IGYPVILKA------AAGGGGRGMRVVEDESDL 179 (445)
T ss_pred hCCHHHHHHHHH----HCCC---CCCCCcccccCCHHHHHHHHHH--cCCCEEEEe------CCCCCCCCeEEECCHHHH
Confidence 567777766554 3342 2223333333344444433332 235799999 999999999999986654
Q ss_pred C--------------CCCcceeeeccc
Q psy16955 521 P--------------RKMPLVVQKYLD 533 (842)
Q Consensus 521 ~--------------~~~~~VVQkYIe 533 (842)
. ....++||+||+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~vlvEe~i~ 206 (445)
T PRK08462 180 ENLYLAAESEALSAFGDGTMYMEKFIN 206 (445)
T ss_pred HHHHHHHHHHHHhccCCCcEEEeccCC
Confidence 2 124689999997
No 48
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.24 E-value=0.0085 Score=68.14 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+. +.|- ...|.++..-.+.+++.+...+- +-.+|+|| ..++.|+||.++++.+++
T Consensus 113 ~~DK~~~r~~l~----~~gI---p~pp~~~~~v~~~~~~~~~~~~~--g~PvvvKP------~~g~gs~Gv~iv~~~~el 177 (451)
T PRK08591 113 MGDKVTAKATMK----KAGV---PVVPGSDGPVDDEEEALAIAKEI--GYPVIIKA------TAGGGGRGMRVVRTEAEL 177 (451)
T ss_pred hcCHHHHHHHHH----HcCC---CCCCCcccccCCHHHHHHHHHHc--CCCEEEEE------CCCCCCceEEEECCHHHH
Confidence 456766655443 3442 22233332323334333333221 34699999 899999999999986655
Q ss_pred C--------------CCCcceeeeccc
Q psy16955 521 P--------------RKMPLVVQKYLD 533 (842)
Q Consensus 521 ~--------------~~~~~VVQkYIe 533 (842)
. ....++||+||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 178 EKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 2 134689999997
No 49
>PRK05586 biotin carboxylase; Validated
Probab=97.24 E-value=0.0074 Score=68.91 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
+.+.++|++++.+.+.+. +.-....+||++|+++++|++|||..|.-.
T Consensus 249 ~~~~~~l~~~a~~i~~aL----------------g~~g~~~vEf~~~~~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 249 EELRKKMGEIAVKAAKAV----------------NYKNAGTIEFLLDKDGNFYFMEMNTRIQVE 296 (447)
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCcceeEEEEEEcCCCCEEEEEEECCCCCC
Confidence 344566777666655542 122356799999999999999999887543
No 50
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.23 E-value=0.0054 Score=70.89 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=49.7
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCc-hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP-GDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP-~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
.+++|..+.+.+. +.|- ...|.++.+. .+..++.+..++ -+-.+|+|| ..++.|+||.++++.+
T Consensus 111 ~~~DK~~~k~~l~----~~gI---pvpp~~~~~~~~~~~~~~~~~~~--igyPvvvKP------~~ggGg~Gv~iv~~~~ 175 (478)
T PRK08463 111 KMGNKNIARYLMK----KNGI---PIVPGTEKLNSESMEEIKIFARK--IGYPVILKA------SGGGGGRGIRVVHKEE 175 (478)
T ss_pred hhCcHHHHHHHHH----HcCC---CCCCCccccCCCCHHHHHHHHHH--hCCCEEEEe------CCCCCCCceEEeCCHH
Confidence 4677766655443 3342 3334454433 234444443332 134699999 9999999999999866
Q ss_pred ccC--------------CCCcceeeeccc
Q psy16955 519 QIP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 519 qI~--------------~~~~~VVQkYIe 533 (842)
++. ....++||+||+
T Consensus 176 eL~~a~~~~~~~a~~~~~~~~vlvEefI~ 204 (478)
T PRK08463 176 DLENAFESCKREALAYFNNDEVFMEKYVV 204 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 542 235789999996
No 51
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.19 E-value=0.01 Score=72.13 Aligned_cols=47 Identities=23% Similarity=0.571 Sum_probs=35.9
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccc---ccc--------CCCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKW---NQI--------PRKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l---~qI--------~~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
...|||| ..++.|+||.++.+. .++ .....+|||+||. |+ |+|+.|+
T Consensus 512 ~PVVVKP------~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G~--EyRv~VI 569 (737)
T TIGR01435 512 KAIVVKP------KSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------GT--EYRFFVL 569 (737)
T ss_pred CCEEEee------CCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------CC--EEEEEEE
Confidence 3589999 999999999998663 222 1245799999996 64 8888776
No 52
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.15 E-value=0.016 Score=67.65 Aligned_cols=75 Identities=23% Similarity=0.099 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecC-CCceEEEEeecCCCCCCC-ChhhH---HhHH
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDS-KLKPWLLEVNISPSLHSS-SPLDL---AVKG 706 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDe-dLKPWLLEVN~sPSL~s~-SplD~---~VK~ 706 (842)
+.+.++|++++.++..+.. .-+|..++++||++|. ++++||+|||..|+=.+. +..-. .=-.
T Consensus 275 ~ei~eeIqeiA~ka~~aL~-------------~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p 341 (493)
T PRK06524 275 PAQTRKAREMVRKLGDVLS-------------REGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMP 341 (493)
T ss_pred HHHHHHHHHHHHHHHHHhh-------------cCCCEEEEEEEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChh
Confidence 3445667777765555421 1257899999999995 699999999988876432 11000 0114
Q ss_pred HHHHHHHHHcCcc
Q psy16955 707 PLVQDLFNIVGFH 719 (842)
Q Consensus 707 ~LI~D~L~L~gi~ 719 (842)
..+--++..+|++
T Consensus 342 ~fllh~~a~~~~p 354 (493)
T PRK06524 342 LFLFHLLEYMDVD 354 (493)
T ss_pred HHHHHHHHHhCCC
Confidence 4555666677764
No 53
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=97.13 E-value=0.0079 Score=69.31 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=48.2
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+++|..+.+.+. +.|-. -.|.+.....+.+++.+..++- +-.+|+|| ..++.|+|+.++++.++
T Consensus 115 ~~~DK~~~r~~l~----~~GIp---~~p~~~~~v~~~~e~~~~~~~i--gyPvvvKp------~~gggg~Gv~~v~~~~e 179 (467)
T PRK12833 115 TMGDKARARRTAR----RAGVP---TVPGSDGVVASLDAALEVAARI--GYPLMIKA------AAGGGGRGIRVAHDAAQ 179 (467)
T ss_pred HhcCHHHHHHHHH----HcCCC---CCCCcCcCcCCHHHHHHHHHHh--CCCEEEEE------CCCCCCCeEEEECCHHH
Confidence 3567777655443 34422 2222212223344443333322 35699999 99999999999998766
Q ss_pred cC--------------CCCcceeeeccc
Q psy16955 520 IP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 520 I~--------------~~~~~VVQkYIe 533 (842)
+. ....++||+||+
T Consensus 180 L~~a~~~~~~~~~~~~~~~~vlvEefi~ 207 (467)
T PRK12833 180 LAAELPLAQREAQAAFGDGGVYLERFIA 207 (467)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 53 135689999997
No 54
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.09 E-value=0.0052 Score=69.05 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=37.6
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC-------------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP-------------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~-------------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
...|+|| ..++.|+|++++++.+++. ....++||+||. |.-|.+-+|+
T Consensus 150 ~PvIVKp------~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~ 210 (358)
T PRK13278 150 RPVIVKL------PGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFY 210 (358)
T ss_pred CCEEEEe------CCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEE
Confidence 4689999 8999999999998855431 246799999997 7777776554
No 55
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.08 E-value=0.0065 Score=75.32 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+. ..|.. .|.++.+-. ..++.+...+ -.-.+|+|| ..++.|+|++++++..++
T Consensus 105 ~~dK~~~r~~L~----~~GIp----~P~~~~v~~-~~e~~~~~~~--~~~PvVVKP------~~g~gS~GV~~v~~~~el 167 (887)
T PRK02186 105 CRDKKRLARTLR----DHGID----VPRTHALAL-RAVALDALDG--LTYPVVVKP------RMGSGSVGVRLCASVAEA 167 (887)
T ss_pred hcCHHHHHHHHH----HcCCC----CCCEEEeCC-HHHHHHHHHh--CCCCEEEEe------CCCCCCCCeEEECCHHHH
Confidence 456666655444 33432 477766532 2233333322 134699999 999999999999886654
Q ss_pred C---------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 521 P---------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 521 ~---------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
. ...++|||+||+ |.-|.+-+++
T Consensus 168 ~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~ 199 (887)
T PRK02186 168 AAHCAALRRAGTRAALVQAYVE------GDEYSVETLT 199 (887)
T ss_pred HHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEE
Confidence 2 246799999996 7777776543
No 56
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.06 E-value=0.0036 Score=77.43 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=53.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEE-Eccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKV-VHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~v-i~~l~q 519 (842)
..+|....+.|. .+|-. +|+++.+.. .++..+..++- +...|+|| ..++.|+||.+ +.+.++
T Consensus 211 a~DK~~tk~lL~----~~GIp----vP~~~~~~s-~~ea~~~~~~i--g~PvVVKP------~~g~~G~GV~l~v~s~~e 273 (864)
T TIGR02068 211 ACDKDLTKEILS----DAGVP----VPEGTVVQS-AEDAWEAAQDL--GYPVVIKP------YDGNHGRGVTINILTRDE 273 (864)
T ss_pred HcCHHHHHHHHH----HcCcC----CCCEEEECC-HHHHHHHHHHc--CCCEEEEE------CCCCCccCEEEEeCCHHH
Confidence 446666655444 34532 666665532 22233333322 34689999 89999999998 776555
Q ss_pred cC--------CCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 520 IP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 520 I~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
+. ....+|||+||. | -|+|++|+
T Consensus 274 l~~a~~~a~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 274 IESAYEAAVEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred HHHHHHHHHhhCCcEEEEEecc------C--CEEEEEEE
Confidence 42 135799999995 6 48888664
No 57
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.01 E-value=0.005 Score=66.21 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=29.4
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCCCCcceeeeccc
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLD 533 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~~~~VVQkYIe 533 (842)
...+|+|| ..++.|.||.+..+..++ .|+|+||+
T Consensus 138 ~~k~ViKp------~dgCgge~i~~~~~~pd~-----~i~qEfIe 171 (307)
T COG1821 138 PKKYVIKP------ADGCGGEGILFGRDFPDI-----EIAQEFIE 171 (307)
T ss_pred CceEEecc------cccCCcceeeccCCCcch-----hhHHHhcC
Confidence 46799999 999999999988776654 89999997
No 58
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=96.96 E-value=0.02 Score=66.15 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=48.4
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+++|..+.+.+.+ .|- ...|.+...-.+.++.....++- +-.+|+|| ..++.|+||.++++.++
T Consensus 111 ~~~DK~~~r~~l~~----~GI---p~pp~~~~~~~~~~e~~~~~~~i--gyPvvvKp------~~ggGg~Gv~~v~~~~e 175 (472)
T PRK07178 111 RMGDKTEARRAMIK----AGV---PVTPGSEGNLADLDEALAEAERI--GYPVMLKA------TSGGGGRGIRRCNSREE 175 (472)
T ss_pred HhcCHHHHHHHHHH----CCC---CCCCCcCcCCCCHHHHHHHHHHc--CCcEEEEe------CCCCCCCCceEeCCHHH
Confidence 46677777665543 342 22233322223444444433332 35699999 99999999999998766
Q ss_pred cCC--------------CCcceeeeccc
Q psy16955 520 IPR--------------KMPLVVQKYLD 533 (842)
Q Consensus 520 I~~--------------~~~~VVQkYIe 533 (842)
+.. ...++||+||.
T Consensus 176 L~~a~~~~~~~~~~~~~~~~v~iE~~i~ 203 (472)
T PRK07178 176 LEQNFPRVISEATKAFGSAEVFLEKCIV 203 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 531 34688899986
No 59
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=96.94 E-value=0.0054 Score=74.90 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccc---cc
Q psy16955 443 RKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKW---NQ 519 (842)
Q Consensus 443 rKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l---~q 519 (842)
+|....+.|. +.|-. +|.+..+- +.+.....+.+. .+...|+|| ..++.|+||.++.+. ++
T Consensus 488 DK~~tk~lL~----~~GIp----vP~~~~~~-~~e~a~~~~~~~-~g~PvVVKP------~~g~~G~GV~~~~~~~~~ee 551 (752)
T PRK02471 488 NKVVTKKILA----EAGFP----VPAGDEFT-SLEEALADYSLF-ADKAIVVKP------KSTNFGLGISIFKEPASLED 551 (752)
T ss_pred CHHHHHHHHH----HCCcC----CCCEEEEc-CHHHHHHHHHHh-cCCCEEEEE------CCCCCcCCeEEecCcCCHHH
Confidence 5655544443 34432 46655443 333333433321 124689999 999999999997543 22
Q ss_pred c--------CCCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 520 I--------PRKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 520 I--------~~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
+ .....+|||+||. |+ |+|++|+
T Consensus 552 l~~A~~~a~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 552 YEKALEIAFREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred HHHHHHHHHhcCCcEEEEeccc------CC--EEEEEEE
Confidence 2 1245799999995 64 8888664
No 60
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.92 E-value=0.014 Score=74.22 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
+++|..+.+.+. +.| ....|.++.+..+.+++.+..++- +-.+|+|| ..++.|+||.++++.+++
T Consensus 117 ~~DK~~~r~~l~----~~G---VPv~P~~~~~v~s~eea~~~a~~i--GyPvVVKP------~~GgGGrGv~vV~~~eEL 181 (1146)
T PRK12999 117 LGDKVAARNAAI----KAG---VPVIPGSEGPIDDIEEALEFAEEI--GYPIMLKA------SAGGGGRGMRIVRSEEEL 181 (1146)
T ss_pred hCCHHHHHHHHH----HCC---CCCCCCcccCCCCHHHHHHHHHHh--CCCEEEEE------CCCCCCCCeEEeCCHHHH
Confidence 567777665544 334 233444442444555555444332 35699999 999999999999986655
Q ss_pred CC--------------CCcceeeeccc
Q psy16955 521 PR--------------KMPLVVQKYLD 533 (842)
Q Consensus 521 ~~--------------~~~~VVQkYIe 533 (842)
.. ...++||+||+
T Consensus 182 ~~a~~~a~~ea~~~fg~~~vlVEefI~ 208 (1146)
T PRK12999 182 EEAFERAKREAKAAFGNDEVYLEKYVE 208 (1146)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 21 35789999997
No 61
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.92 E-value=0.014 Score=65.01 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
+.+.++|++++.+++.+. +....+.+||+++++ .||++|||..|.-.
T Consensus 242 ~~~~~~i~~~~~~~~~~L----------------~~~G~~~ve~~~~~~-~~~viEinpR~~~~ 288 (395)
T PRK09288 242 PAALEEAQEIAKKVTDAL----------------GGRGLFGVELFVKGD-EVYFSEVSPRPHDT 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCeeEEEEEEEEeCC-eEEEEEecCCCCCC
Confidence 344566777666665542 145789999999887 89999999998743
No 62
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.83 E-value=0.042 Score=65.40 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSL 694 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL 694 (842)
+.+.++|++++.+.+.+. .|..++.+||++++++++|++|||..|..
T Consensus 246 ~~~~~~~~~~A~~~~~aL----------------g~~Gv~~vEffv~~dG~v~v~EInpRpg~ 292 (577)
T PLN02948 246 WKVAKLATDVAEKAVGSL----------------EGAGVFGVELFLLKDGQILLNEVAPRPHN 292 (577)
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCCeEEEEEEEEcCCCcEEEEEEeCCCCC
Confidence 344566777766555542 35689999999999999999999999985
No 63
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.78 E-value=0.024 Score=66.23 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=50.0
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+++|..+.+.+. +.|- ...|-+.....+.+++.+..++- +-.+|+|| ..++.|+||.++++.++
T Consensus 112 ~~~DK~~~k~~l~----~~GV---pv~p~~~~~v~~~~e~~~~a~~i--gyPvvIKp------~~GgGG~Gv~iv~~~~e 176 (499)
T PRK08654 112 AMGSKINAKKLMK----KAGV---PVLPGTEEGIEDIEEAKEIAEEI--GYPVIIKA------SAGGGGIGMRVVYSEEE 176 (499)
T ss_pred HhCCHHHHHHHHH----HcCc---CCCCCcCcCCCCHHHHHHHHHHh--CCCEEEEe------CCCCCCCeEEEeCCHHH
Confidence 4678887765554 3342 23333332123344444443332 34699999 99999999999998765
Q ss_pred cC--------------CCCcceeeecccC
Q psy16955 520 IP--------------RKMPLVVQKYLDD 534 (842)
Q Consensus 520 I~--------------~~~~~VVQkYIen 534 (842)
+. ....++||+||+.
T Consensus 177 L~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 177 LEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 52 1356899999973
No 64
>KOG2158|consensus
Probab=96.65 E-value=0.00065 Score=77.33 Aligned_cols=58 Identities=36% Similarity=0.717 Sum_probs=54.2
Q ss_pred CCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCCc
Q psy16955 665 YCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEK 723 (842)
Q Consensus 665 ~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~~ 723 (842)
.-||+.+|||+++ +.++||++|+|.-|++.++...|+.++..+...++.++.+...++
T Consensus 12 ~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~ 69 (565)
T KOG2158|consen 12 SVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDK 69 (565)
T ss_pred eeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccch
Confidence 4699999999999 999999999999999999999999999999999999999876554
No 65
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.65 E-value=0.036 Score=70.13 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=46.3
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeecccCc
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLDDP 535 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIenP 535 (842)
.|+++.+. +.+++....++- +-.+|+|| ..+..|+|+.++.+.+++. ...++|||+||+
T Consensus 684 ~P~~~~v~-s~ee~~~~~~~i--gyPvIVKP------~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-- 752 (1050)
T TIGR01369 684 QPKWKTAT-SVEEAVEFASEI--GYPVLVRP------SYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-- 752 (1050)
T ss_pred CCCeEEEC-CHHHHHHHHHhc--CCCEEEEE------CCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC--
Confidence 46665543 233333333222 34699999 8999999999999865542 346799999997
Q ss_pred ccCCCCeeEEEEE
Q psy16955 536 YLINDTKFDLRLY 548 (842)
Q Consensus 536 LLIdGrKFDLRvY 548 (842)
+|+-+++.++
T Consensus 753 ---~G~E~~Vd~l 762 (1050)
T TIGR01369 753 ---DAVEVDVDAV 762 (1050)
T ss_pred ---CCeEEEEEEE
Confidence 4777777653
No 66
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.62 E-value=0.071 Score=61.29 Aligned_cols=76 Identities=8% Similarity=-0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHH
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQD 711 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D 711 (842)
+.+.++|++++.+++.+... .......++.++||+.+++ ||+||+|..++=....-+-..+...|+.-
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~-----------~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~ 312 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKD-----------ENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDFVET 312 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------cCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCHHHH
Confidence 45566777777666665321 1112447889999997555 99999998877433323334455666666
Q ss_pred HHHHcCcc
Q psy16955 712 LFNIVGFH 719 (842)
Q Consensus 712 ~L~L~gi~ 719 (842)
++.++.-.
T Consensus 313 ~~~~~~g~ 320 (435)
T PRK06395 313 LHQIYSGN 320 (435)
T ss_pred HHHHhcCC
Confidence 66555543
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.57 E-value=0.054 Score=60.46 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhh-cCCcceEEEcCCCccCCCCCCCCccEEEEcc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWER-NCGNIKWIVKPIHFWFQPASARGIGIKVVHK 516 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k-~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~ 516 (842)
+-+|+.++..+++ .| . -+|.++.. ...++|...+++ .......++|| ..|..|+|.+++++
T Consensus 105 ~~dK~~~y~~~~~----~~---i-pvp~~~~v-~t~~el~~a~~~l~~~~~~~CvKP------~~g~gg~GFr~l~~ 166 (329)
T PF15632_consen 105 ADDKAAFYEFMEA----NG---I-PVPPYWRV-RTADELKAAYEELRFPGQPLCVKP------AVGIGGRGFRVLDE 166 (329)
T ss_pred HhhHHHHHHHHHh----CC---C-CCCCEEEe-CCHHHHHHHHHhcCCCCceEEEec------ccCCCcceEEEEcc
Confidence 5588888877654 22 1 46677664 567777776664 23456799999 99999999999983
No 68
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.54 E-value=0.032 Score=70.67 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=44.5
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeecccCc
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLDDP 535 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIenP 535 (842)
.|+++.+. ..+++.+..++ -+-.+|+|| ..++.|+|+.++.+.+++. ...++|||+||+
T Consensus 684 ~P~~~~~~-s~ee~~~~~~~--igyPvvVKP------~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~-- 752 (1066)
T PRK05294 684 QPPNGTAT-SVEEALEVAEE--IGYPVLVRP------SYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE-- 752 (1066)
T ss_pred CCCeEEEC-CHHHHHHHHHh--cCCCeEEEe------CCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC--
Confidence 46665543 22333333322 134699999 9999999999998866542 246799999997
Q ss_pred ccCCCC-eeEEEE
Q psy16955 536 YLINDT-KFDLRL 547 (842)
Q Consensus 536 LLIdGr-KFDLRv 547 (842)
|. -+++.+
T Consensus 753 ----G~~E~sV~~ 761 (1066)
T PRK05294 753 ----GAIEVDVDA 761 (1066)
T ss_pred ----CCEEEEEEE
Confidence 55 666665
No 69
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=96.53 E-value=0.054 Score=63.30 Aligned_cols=75 Identities=9% Similarity=-0.030 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHH
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDL 712 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~ 712 (842)
.+++.+.+++..++.+....+ .......+-.+||++++..|||||+|....=.....+-..+...|++-+
T Consensus 261 ~~~~~~~~~v~~~l~al~~~~----------g~~~~G~l~~elmlt~~~GP~vIE~n~R~Gdpe~~~llp~l~~dl~~~~ 330 (486)
T PRK05784 261 EEYEEAVEIVKRTIDAIYKET----------GERYVGVISGQMMLTELWGPTVIEYYSRFGDPEASNIIPRIESDFGELF 330 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------CCCcEEEEEEEEEEecCCCcEEEEEecccCCchHHHHHHhccCCHHHHH
Confidence 344555566666655532210 1122367889999983344999999988774333344444555555555
Q ss_pred HHHcC
Q psy16955 713 FNIVG 717 (842)
Q Consensus 713 L~L~g 717 (842)
+.++.
T Consensus 331 ~~~~~ 335 (486)
T PRK05784 331 ELAAT 335 (486)
T ss_pred HHHHc
Confidence 55544
No 70
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.45 E-value=0.062 Score=59.50 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcc
Q psy16955 437 GTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHK 516 (842)
Q Consensus 437 gs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~ 516 (842)
.-..|.+...+.+.+..+....+. .-=..|..-.+..+.+.+.+.++..+-.-..|+|| .++ ..++....+.++-+
T Consensus 87 ~i~~l~dR~~~~~~l~~l~~~~~~-~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KP--lvA-~Gsa~SH~Maivf~ 162 (307)
T PF05770_consen 87 AIRPLLDRQSMLQVLSELELSEGD-GRIRVPKFVVINSDAESLPELLKEAGLKFPLICKP--LVA-CGSADSHKMAIVFN 162 (307)
T ss_dssp HHHHHCCHHCCHHHHHHHHHHHTC-TTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEE--SB--SSTSCCCEEEEE-S
T ss_pred HHHHHHCHHHHHHHHHHhhccccC-CcccCCceEEEcCCHHHHHHHHHHCCCcccEEeee--hhh-cCCccceEEEEEEC
Confidence 333455555566666555433321 22257776666655555556666666677899999 222 22235566777766
Q ss_pred ccccCC-CCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 517 WNQIPR-KMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 517 l~qI~~-~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
.+.+.. +-++|+|+||. -+|.= +.+||+
T Consensus 163 ~~gL~~L~~P~VlQeFVN----HggvL--fKVyVv 191 (307)
T PF05770_consen 163 EEGLKDLKPPCVLQEFVN----HGGVL--FKVYVV 191 (307)
T ss_dssp GGGGTT--SSEEEEE--------TTEE--EEEEEE
T ss_pred HHHHhhcCCCEEEEEeec----CCCEE--EEEEEe
Confidence 554432 46899999998 34543 344554
No 71
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.22 E-value=0.042 Score=62.02 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=43.2
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCC--CccEEEEccccccC---------------CCCccee
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASAR--GIGIKVVHKWNQIP---------------RKMPLVV 528 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsR--GrGI~vi~~l~qI~---------------~~~~~VV 528 (842)
+|++|.=|.+. +...|||| ..++. |+|++++++.+++. ....++|
T Consensus 141 ~Pk~~~~p~eI------------d~PVIVKp------~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 141 YPKLFKDPEEI------------DRPVIVKL------PEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CceeecCcccc------------CccEEEEE------CCCCCccccCeEeeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 48888644222 34699999 89999 99999998865442 1145679
Q ss_pred eecccCcccCCCCeeEEEEEE
Q psy16955 529 QKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 529 QkYIenPLLIdGrKFDLRvYV 549 (842)
|+||. |.-|.+-+|+
T Consensus 203 QEyI~------G~ey~~d~F~ 217 (366)
T PRK13277 203 EEYVI------GAHFNFNYFY 217 (366)
T ss_pred EeccC------CCEEEEEEEE
Confidence 99996 8888877664
No 72
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=95.91 E-value=0.0097 Score=60.70 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=41.7
Q ss_pred CCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc----cc----C--CCCcceeeecc
Q psy16955 463 FGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN----QI----P--RKMPLVVQKYL 532 (842)
Q Consensus 463 ~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~----qI----~--~~~~~VVQkYI 532 (842)
.+++|.|++-. +.+.+.+.+++. +.||+|| ..+..|+|++.++.-+ .+ . ...+++||+||
T Consensus 9 ~~~~P~T~vs~-~~~~i~~f~~~~---~~~VlKP------l~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~fl 78 (173)
T PF02955_consen 9 PELIPPTLVSR-DKEEIRAFIEEH---GDIVLKP------LDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFL 78 (173)
T ss_dssp CCCS--EEEES--HHHHHHHHHHH---SSEEEEE------SS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--
T ss_pred cccCcCEEEEC-CHHHHHHHHHHC---CCEEEEE------CCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecc
Confidence 37899998764 555555555543 3399999 9999999999998731 11 1 23579999999
Q ss_pred cCcccCCCCeeEEEEEEE
Q psy16955 533 DDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 533 enPLLIdGrKFDLRvYVL 550 (842)
.. .-+| |.|+.++
T Consensus 79 p~--i~~G---DkRii~~ 91 (173)
T PF02955_consen 79 PE--IKEG---DKRIILF 91 (173)
T ss_dssp GG--GGG----EEEEEEE
T ss_pred cc--ccCC---CEEEEEE
Confidence 74 3466 7788554
No 73
>PLN02735 carbamoyl-phosphate synthase
Probab=95.85 E-value=0.17 Score=64.52 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=36.1
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeecccCcccCCCCeeEEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIenPLLIdGrKFDLRv 547 (842)
-..|+|| ..+..|+|+.++.+.+++. ...+++||+||+ +|+-+++=+
T Consensus 738 yPvvVKP------~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-----~g~Ei~V~v 794 (1102)
T PLN02735 738 YPVVVRP------SYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-----DATEIDVDA 794 (1102)
T ss_pred CCeEEEe------CCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-----CcEEEEEEE
Confidence 4689999 9999999999999876652 235799999996 356666543
No 74
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=95.69 E-value=0.26 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.8
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCC
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISP 692 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sP 692 (842)
.+..++.+++||++++ |++||.|...
T Consensus 164 ~y~GvLy~glMlt~~G-p~vlEfN~Rf 189 (194)
T PF01071_consen 164 PYRGVLYAGLMLTEDG-PKVLEFNVRF 189 (194)
T ss_dssp --EEEEEEEEEEETTE-EEEEEEESSG
T ss_pred CcceeeeeeeEEeCCC-cEEEEEeCCC
Confidence 4668999999999888 9999999864
No 75
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.56 E-value=0.28 Score=63.25 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
.+++|..+.+.+ ++.|- ...|.++++ .+.+++....++ -.-.+|+|| ..++.|+|+.++++.++
T Consensus 111 ~~~DK~~ar~ll----~~~GV---Pt~p~~~lv-~s~dea~~~a~~--igyPvVVKP------~~ggGG~GV~iv~~~eE 174 (1201)
T TIGR02712 111 KFGLKHTARELA----EAAGV---PLLPGTGLL-SSLDEALEAAKE--IGYPVMLKS------TAGGGGIGMQKCDSAAE 174 (1201)
T ss_pred HhcCHHHHHHHH----HHCCC---CCCCceeec-CCHHHHHHHHHh--cCCeEEEEE------CCCCCCCCEEEECCHHH
Confidence 356776554433 33442 233444433 233444443332 235799999 99999999999998665
Q ss_pred cC--------------CCCcceeeeccc
Q psy16955 520 IP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 520 I~--------------~~~~~VVQkYIe 533 (842)
+. ....+|||+||+
T Consensus 175 L~~a~~~~~~~~~~~f~~~~vlVEefI~ 202 (1201)
T TIGR02712 175 LAEAFETVKRLGESFFGDAGVFLERFVE 202 (1201)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 52 134589999996
No 76
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.50 E-value=0.32 Score=61.97 Aligned_cols=47 Identities=15% Similarity=0.451 Sum_probs=36.6
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEcccccc--------CCCCcceeeecccCcccCCCCeeEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQI--------PRKMPLVVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI--------~~~~~~VVQkYIenPLLIdGrKFDLRv 547 (842)
+-.+|+|| ..+..|+|+.++.+.+++ ....++|||+||+ |.-+++-+
T Consensus 705 gyPvVVKP------~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 705 GYPVLIRP------SYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred CCCEEEEe------CCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEEEEE
Confidence 35799999 899999999999886554 2356799999995 76666544
No 77
>PLN02735 carbamoyl-phosphate synthase
Probab=95.44 E-value=0.14 Score=65.29 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIe 533 (842)
-..|+|| ..++.|+|+.++++.+++. ...+++||+||.
T Consensus 181 yPvVVKP------~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 181 FPLIIRP------AFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CCEEEEe------CCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 3689999 8889999999998866542 245689999986
No 78
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.20 E-value=0.2 Score=63.79 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC
Q psy16955 442 GRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP 521 (842)
Q Consensus 442 trKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~ 521 (842)
.+|..+.+.+ +..|.. +|.++.+.. .+++.+..++- +-..|+|| ..+..|+|+.++++.+++.
T Consensus 127 ~DK~~~k~~l----~~~Gip----vp~~~~v~s-~~e~~~~~~~i--g~PvVVKP------~~g~gg~Gv~iv~~~eeL~ 189 (1066)
T PRK05294 127 EDRELFKEAM----KKIGLP----VPRSGIAHS-MEEALEVAEEI--GYPVIIRP------SFTLGGTGGGIAYNEEELE 189 (1066)
T ss_pred cCHHHHHHHH----HHCCcC----CCCeeeeCC-HHHHHHHHHHc--CCCeEEEc------CCCCCCCCeEEECCHHHHH
Confidence 3566654433 344532 456655532 23333333322 23689999 8999999999999876652
Q ss_pred C----------CCcceeeeccc
Q psy16955 522 R----------KMPLVVQKYLD 533 (842)
Q Consensus 522 ~----------~~~~VVQkYIe 533 (842)
. ..++|||+||.
T Consensus 190 ~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 190 EIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred HHHHHHHhhCCCCeEEEEEccc
Confidence 1 35789999996
No 79
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=94.76 E-value=0.42 Score=55.61 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=52.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
++.|....+.++ +-| -..+|-+.-...+.+++.+..++-+ -..|+|| ..|..|+||+++++.+++
T Consensus 113 mgdK~~ar~~~~----~aG---VP~vpgs~~~~~~~ee~~~~a~~iG--yPVivKa------~~GgGg~G~r~v~~~~el 177 (449)
T COG0439 113 MGDKITARRLMA----KAG---VPVVPGSDGAVADNEEALAIAEEIG--YPVIVKA------AAGGGGRGMRVVRNEEEL 177 (449)
T ss_pred hhhHHHHHHHHH----HcC---CCcCCCCCCCcCCHHHHHHHHHHcC--CCEEEEE------CCCCCcccEEEECCHHHH
Confidence 555655544333 223 2345555322344556666555433 5689999 999999999999987665
Q ss_pred C--------------CCCcceeeecccCcc
Q psy16955 521 P--------------RKMPLVVQKYLDDPY 536 (842)
Q Consensus 521 ~--------------~~~~~VVQkYIenPL 536 (842)
. ....+++++||++|-
T Consensus 178 ~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 178 EAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred HHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 3 134599999999763
No 80
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=94.67 E-value=0.39 Score=61.09 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC
Q psy16955 442 GRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP 521 (842)
Q Consensus 442 trKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~ 521 (842)
.+|..+.+.| ++.|.. +|.++.+. +.+++.+..++- +-..|+|| ..+..|+|+.++++.+++.
T Consensus 126 ~DK~~~k~~l----~~~Gip----vp~~~~v~-s~~e~~~~~~~i--gyPvIVKP------~~g~gg~Gv~iv~~~eeL~ 188 (1050)
T TIGR01369 126 EDRELFREAM----KEIGEP----VPESEIAH-SVEEALAAAKEI--GYPVIVRP------AFTLGGTGGGIAYNREELK 188 (1050)
T ss_pred CCHHHHHHHH----HHCCCC----CCCeeecC-CHHHHHHHHHHh--CCCeEEEC------CCCCCCCCeEEECCHHHHH
Confidence 4566554443 334533 34544443 233333333322 34689999 8999999999999866542
Q ss_pred C----------CCcceeeeccc
Q psy16955 522 R----------KMPLVVQKYLD 533 (842)
Q Consensus 522 ~----------~~~~VVQkYIe 533 (842)
. ..+++||+||.
T Consensus 189 ~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 189 EIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred HHHHHHHhcCCCCcEEEEEccc
Confidence 1 25789999996
No 81
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=94.51 E-value=0.14 Score=53.59 Aligned_cols=89 Identities=19% Similarity=0.406 Sum_probs=54.7
Q ss_pred CcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 439 FQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 439 ~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
+.++.|--++..|.+++++.|++.|..+++||. |.-. ++ . ..+.-..++|= ...++|.|-..+++..
T Consensus 7 ynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~y-pnh~-em---~--s~~~fPvVvKv------G~~h~G~GKvkv~n~~ 73 (203)
T PF02750_consen 7 YNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYY-PNHR-EM---L--SAPRFPVVVKV------GHAHAGMGKVKVDNQQ 73 (203)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHTTTS-B---EEE-SSGG-GG---C--S-SSSSEEEEE------SS-STTTTEEEE-SHH
T ss_pred hhhcCCcHHHHHHHHHHHHhCCcccccceeeec-CChh-hh---c--cCCCCCEEEEE------ccccCceeEEEEccHH
Confidence 346778888888888999999999999999985 3222 11 1 12356789999 8889999998887754
Q ss_pred ccCC-------CCcc-eeeecccCcccCCCCeeEEEE
Q psy16955 519 QIPR-------KMPL-VVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 519 qI~~-------~~~~-VVQkYIenPLLIdGrKFDLRv 547 (842)
++.. ...| .+..|| ..|+|||+
T Consensus 74 ~~qDi~sll~~~~~Y~T~EPfI-------d~kyDirv 103 (203)
T PF02750_consen 74 DFQDIASLLAITKDYATTEPFI-------DAKYDIRV 103 (203)
T ss_dssp HHHHHHHHHHHHTS-EEEEE----------EEEEEEE
T ss_pred HHHHHHHHHHhcCceEEeeccc-------cceeEEEE
Confidence 4321 1222 333343 68999997
No 82
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.51 E-value=0.66 Score=59.20 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=38.8
Q ss_pred eeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeeccc
Q psy16955 466 TPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLD 533 (842)
Q Consensus 466 lP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIe 533 (842)
+|+++.+. +.+++.+..++- +-..|+|| ..+..|+|+.++++.+++. ...+++||+||.
T Consensus 143 vp~~~~v~-s~ee~~~~~~~i--gyPvVVKP------~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 143 VPESEIVT-SVEEALAFAEKI--GFPIIVRP------AYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCCceeeC-CHHHHHHHHHHc--CCCEEEEE------CcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 46666553 233333333221 34689999 8888999999999866542 125789999996
No 83
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.69 E-value=0.22 Score=57.87 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=45.6
Q ss_pred CeeeccccCch-------hHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcc-----ccccC---CCCccee
Q psy16955 464 GFTPRTYVLPG-------DDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHK-----WNQIP---RKMPLVV 528 (842)
Q Consensus 464 ~FlP~TfiLP~-------d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~-----l~qI~---~~~~~VV 528 (842)
.++|.|..|.. +..++.+.... ....||+|| ..+..|+||.+=.. |.++. ..++||+
T Consensus 308 ~HvP~T~~l~~~~~~~~g~~~dL~~~~~a--~r~~lVLKP------~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yil 379 (445)
T PF14403_consen 308 RHVPWTRLLTAGRTTYQGEDVDLVEFAIA--NRDRLVLKP------NDEYGGKGVYIGWETSPEEWEAALEEAAREPYIL 379 (445)
T ss_pred HhCCceEEEcCccccccccchhHHHHHHh--chhcEEecc------ccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEE
Confidence 58999999977 23334433222 246799999 99999999998654 33221 2469999
Q ss_pred eecccCccc
Q psy16955 529 QKYLDDPYL 537 (842)
Q Consensus 529 QkYIenPLL 537 (842)
|+|+.-+-+
T Consensus 380 Qe~v~~~~~ 388 (445)
T PF14403_consen 380 QEYVRPPRE 388 (445)
T ss_pred EEEecCCcc
Confidence 999985433
No 84
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=92.29 E-value=7 Score=40.03 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCcceEEEc-CCCccCCCCCCCCccEEEEccccccC------CCCcceeeeccc
Q psy16955 476 DKRLRASWERNCGNIKWIVK-PIHFWFQPASARGIGIKVVHKWNQIP------RKMPLVVQKYLD 533 (842)
Q Consensus 476 ~~~f~~~~~k~~~~~~WIvK-P~~~~~~~~gsRGrGI~vi~~l~qI~------~~~~~VVQkYIe 533 (842)
.+++.+..++- +-..|+| + ..|.-|+|-.++++.+++. ...++|++++|.
T Consensus 17 ~~~l~~a~~~i--G~P~vlK~~------~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~ 73 (172)
T PF02222_consen 17 LEDLEEAAESI--GFPAVLKTR------RGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP 73 (172)
T ss_dssp HHHHHHHHHHH--TSSEEEEES------SSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---
T ss_pred HHHHHHHHHHc--CCCEEEEcc------CcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC
Confidence 33444444332 3468999 5 7889999999999877764 468899999996
No 85
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=91.98 E-value=2.4 Score=44.49 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=39.1
Q ss_pred CeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceee
Q psy16955 464 GFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQ 529 (842)
Q Consensus 464 ~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQ 529 (842)
..+|-+-..-.+.++..+..++- +-..++|| ..+..|+|+.++.+.+++. ...+++|.
T Consensus 15 p~~pg~~~~~~~~eea~~~a~~i--GyPVliKa------s~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~ie 86 (211)
T PF02786_consen 15 PVPPGSTVPISSVEEALEFAEEI--GYPVLIKA------SAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIE 86 (211)
T ss_dssp BBSSBESSSBSSHHHHHHHHHHH---SSEEEEE------TTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEE
T ss_pred CcCCCCCCCCCCHHHHHHHHHhc--CCceEEee------cccccccccccccchhhhhhhhhhccccCccccccceEEEe
Confidence 34444443223444444433332 34699999 9999999999999876653 25788999
Q ss_pred ecccCc
Q psy16955 530 KYLDDP 535 (842)
Q Consensus 530 kYIenP 535 (842)
+||+++
T Consensus 87 k~i~~~ 92 (211)
T PF02786_consen 87 KFIEGA 92 (211)
T ss_dssp E--SSE
T ss_pred eehhhh
Confidence 999843
No 86
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=91.94 E-value=0.42 Score=53.58 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=29.9
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccCCCCcceeeecccCcccCCCCeeEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLR 546 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~~~~VVQkYIenPLLIdGrKFDLR 546 (842)
.+.|+|| ..|+.|. +.++.--++++ ...+|+|+||+ |+.+..-
T Consensus 150 kt~IlKP------v~GaGG~-~el~~~~Ee~~-~~~~i~Qefi~------G~p~Svs 192 (389)
T COG2232 150 KTLILKP------VSGAGGL-VELVKFDEEDP-PPGFIFQEFIE------GRPVSVS 192 (389)
T ss_pred eeeEEee------ccCCCce-eeecccccccC-CcceehhhhcC------CceeEEE
Confidence 5799999 7777774 44443334443 37899999998 8877653
No 87
>KOG3895|consensus
Probab=88.68 E-value=2.4 Score=48.02 Aligned_cols=107 Identities=20% Similarity=0.357 Sum_probs=71.9
Q ss_pred hhhhccCcCC------eecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEE
Q psy16955 421 LSFRTLKESQ------KINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIV 494 (842)
Q Consensus 421 ~~~~~L~p~Q------kVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIv 494 (842)
.+|+.|--.- -||-.-..+.++.|--+...|.++.+..|.+.|..+|+||. |. .++... ...-..+|
T Consensus 172 ~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y-Pn--HK~m~s----~~tyPvVV 244 (488)
T KOG3895|consen 172 EDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY-PN--HKEMLS----QPTYPVVV 244 (488)
T ss_pred cchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec-CC--chhhcc----CCCCcEEE
Confidence 4676653332 34444455678899999999999999999999999999985 44 222211 12356789
Q ss_pred cCCCccCCCCCCCCccEEEEccccccCC--------CCcceeeecccCcccCCCCeeEEEE
Q psy16955 495 KPIHFWFQPASARGIGIKVVHKWNQIPR--------KMPLVVQKYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 495 KP~~~~~~~~gsRGrGI~vi~~l~qI~~--------~~~~VVQkYIenPLLIdGrKFDLRv 547 (842)
|= ..++.|.|-..+++-.++.. +...-+|-+| +-|+||||
T Consensus 245 kv------ghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFi-------DaKYDiri 292 (488)
T KOG3895|consen 245 KV------GHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFI-------DAKYDIRI 292 (488)
T ss_pred Ee------cccccccceeeecchhhhHhHHHHHHHHhhhhhccccc-------cccceeeh
Confidence 98 78899999887877555432 2223345555 36889987
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=87.57 E-value=23 Score=41.31 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHHHHHH-HHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHH
Q psy16955 632 AALQDSIV-DVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQ 710 (842)
Q Consensus 632 ~~Lw~~Ik-diIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~ 710 (842)
+.+++++. +||..|+..... .......+|=.-+||+.++ |.+||.|..-.=-....+-..++..|+.
T Consensus 240 ~e~~~~~~~~Iv~ptv~gm~~-----------EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~~ 307 (428)
T COG0151 240 DEVVERAVEEIVEPTVEGMAK-----------EGYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLVE 307 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------cCCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHHH
Confidence 45555555 666556554321 1233457777889999999 9999999865444444444555555544
Q ss_pred HHHHHc
Q psy16955 711 DLFNIV 716 (842)
Q Consensus 711 D~L~L~ 716 (842)
-++..+
T Consensus 308 ~~~a~~ 313 (428)
T COG0151 308 LLLAAV 313 (428)
T ss_pred HHHHHH
Confidence 444433
No 89
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=85.16 E-value=6.4 Score=48.86 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCccee
Q psy16955 463 FGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVV 528 (842)
Q Consensus 463 ~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VV 528 (842)
..-+|-|=-.+.++++..+..+.. .-..|+|- ..|..|+|+.++++..++. ......|
T Consensus 134 vPvipgt~~~~~~~ee~~~fa~~~--gyPvmiKA------~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyv 205 (1149)
T COG1038 134 VPVIPGTDGPIETIEEALEFAEEY--GYPVMIKA------AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYV 205 (1149)
T ss_pred CCccCCCCCCcccHHHHHHHHHhc--CCcEEEEE------ccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEh
Confidence 457888877777777777666543 35689999 9999999999999876663 2567899
Q ss_pred eecccCccc
Q psy16955 529 QKYLDDPYL 537 (842)
Q Consensus 529 QkYIenPLL 537 (842)
.+||+||--
T Consensus 206 Ek~ve~pkH 214 (1149)
T COG1038 206 EKLVENPKH 214 (1149)
T ss_pred hhhhcCcce
Confidence 999998864
No 90
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=83.14 E-value=14 Score=44.50 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=99.3
Q ss_pred CeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceee
Q psy16955 464 GFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQ 529 (842)
Q Consensus 464 ~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQ 529 (842)
..+|-+--.-++...+....++- .-..++|. .+|..|+|++++.+..++. .+..++|.
T Consensus 129 p~VPG~~g~~qd~~~~~~~A~ei--GyPVlIKA------saGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iE 200 (645)
T COG4770 129 PTVPGYHGPIQDAAELVAIAEEI--GYPVLIKA------SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIE 200 (645)
T ss_pred CccCCCCCcccCHHHHHHHHHhc--CCcEEEEe------ccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehh
Confidence 45666554445666666655442 34688999 9999999999999877663 25789999
Q ss_pred ecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcceeecccccccCCCcCCCCcccccc
Q psy16955 530 KYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEAC 609 (842)
Q Consensus 530 kYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~ 609 (842)
||+++|=-| =+-|+-... .-.+|++.. .-|+|..++.
T Consensus 201 kyl~~PRHI-------EiQV~aD~H-GNvv~LgER-------------------------dCSlQRRhQK---------- 237 (645)
T COG4770 201 KYLDKPRHI-------EIQVFADQH-GNVVHLGER-------------------------DCSLQRRHQK---------- 237 (645)
T ss_pred hhcCCCceE-------EEEEEecCC-CCEEEeecc-------------------------ccchhhhcch----------
Confidence 999987432 222222111 112333221 1234443221
Q ss_pred CCcccchHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEE
Q psy16955 610 HGHKWTLKSLWSYLETE--HHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLE 687 (842)
Q Consensus 610 ~G~KWSL~~L~~yLe~~--~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLE 687 (842)
.+++- .+++ +.+...|.+..++...++- +.. -+ -+.|++|.++.-|+||
T Consensus 238 ------------VIEEAPaP~l~-~~~R~amg~aAv~~a~avg---------Y~g--AG-----TVEFivd~~~~f~FlE 288 (645)
T COG4770 238 ------------VIEEAPAPFLT-EETREAMGEAAVAAAKAVG---------YVG--AG-----TVEFIVDADGNFYFLE 288 (645)
T ss_pred ------------hhhcCCCCCCC-HHHHHHHHHHHHHHHHhcC---------CCc--Cc-----eEEEEEcCCCcEEEEE
Confidence 11111 1222 4556667777666655531 111 12 4678999999999999
Q ss_pred eecCCCCCCCChhhHHhH-HHHHHHHHHHcC
Q psy16955 688 VNISPSLHSSSPLDLAVK-GPLVQDLFNIVG 717 (842)
Q Consensus 688 VN~sPSL~s~SplD~~VK-~~LI~D~L~L~g 717 (842)
+|+. |+-.+|....|- -.|+.-.|+++.
T Consensus 289 MNTR--LQVEHPVTE~iTGiDLVewqiRVA~ 317 (645)
T COG4770 289 MNTR--LQVEHPVTELITGIDLVEWQIRVAS 317 (645)
T ss_pred eecc--eeccccchhhhhhhHHHHHHHHHhc
Confidence 9995 444455443332 346666666654
No 91
>KOG0369|consensus
Probab=77.05 E-value=8.7 Score=46.87 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=40.6
Q ss_pred hHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceeeecccCcccC
Q psy16955 475 DDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQKYLDDPYLI 538 (842)
Q Consensus 475 d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQkYIenPLLI 538 (842)
+..+|.+.+ +-..|+|- ..|..|+|+.++++.+++. ..+.++|.++|++|--|
T Consensus 175 EA~eF~k~y-----G~PvI~KA------AyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 175 EALEFVKEY-----GLPVIIKA------AYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred HHHHHHHhc-----CCcEEEee------cccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 444555544 45689999 9999999999999887663 25789999999988543
No 92
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=74.67 E-value=11 Score=44.05 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=81.5
Q ss_pred ecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeee--ccccC--chhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCC
Q psy16955 432 INHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTP--RTYVL--PGDDKRLRASWERNCGNIKWIVKPIHFWFQPASAR 507 (842)
Q Consensus 432 VNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP--~TfiL--P~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsR 507 (842)
|=.=||++.+-.|.-+. -+-.|.+.|..+ -..+| .||.. |++++..+.... -.++|| ..++.
T Consensus 312 iaNA~GtGV~ddka~~~-y~P~~~~~ylge-~~lL~nv~T~~c~~~~el~~VL~~l~------~lViK~------~~~~g 377 (488)
T COG2308 312 IANALGTGVADDKALYA-YVPQMIEYYLGE-EPLLPNVPTYWCGEPDELEHVLANLS------ELVIKP------VEGSG 377 (488)
T ss_pred EecCCCcCcccchhHHH-HHHHHHHHHccc-ccccCCCCeeecCCHHHHHHHHhchh------hheEee------eccCC
Confidence 33357999888887654 566677766422 23333 46655 456666665553 378999 77776
Q ss_pred CccEEEEccccc---------cC-CCCcceeeeccc---CcccCCC----CeeEEEEEEEEeecCCceEEEEcCceEeee
Q psy16955 508 GIGIKVVHKWNQ---------IP-RKMPLVVQKYLD---DPYLIND----TKFDLRLYVLVTSFNPLRIYLYDNGLVRFA 570 (842)
Q Consensus 508 GrGI~vi~~l~q---------I~-~~~~~VVQkYIe---nPLLIdG----rKFDLRvYVLVTS~dPLRIYlY~eGLVRfA 570 (842)
|-|+.+=...++ |. .-.+||.|+-++ -|-.++| +-.|||+|++.+. -.+++.-.||.|++
T Consensus 378 g~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~---~~~~v~pGGLtRVa 454 (488)
T COG2308 378 GYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR---DGVQVMPGGLTRVA 454 (488)
T ss_pred CCcceeccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcC---CceEEcccceeeee
Confidence 666655433221 11 246788887654 3555554 7889999999875 34889999999999
Q ss_pred ccc
Q psy16955 571 SVK 573 (842)
Q Consensus 571 t~k 573 (842)
..+
T Consensus 455 l~~ 457 (488)
T COG2308 455 LRE 457 (488)
T ss_pred ecC
Confidence 864
No 93
>KOG0238|consensus
Probab=67.46 E-value=69 Score=38.54 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=45.6
Q ss_pred CeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceee
Q psy16955 464 GFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQ 529 (842)
Q Consensus 464 ~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQ 529 (842)
..+|-.--+-++.+.+++...+ -.-..++|+ .+|..|+|+.+..+.+++. ....+++.
T Consensus 125 p~vpG~~g~~qs~e~~~~~a~e--IgyPvMiKa------~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llE 196 (670)
T KOG0238|consen 125 PLVPGYHGEDQSDEEAKKVARE--IGYPVMIKA------TAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLE 196 (670)
T ss_pred ccccCcccccccHHHHHHHHHh--cCCcEEEEe------ccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHH
Confidence 4555544444455555554433 234689999 9999999999998866552 25678999
Q ss_pred ecccCccc
Q psy16955 530 KYLDDPYL 537 (842)
Q Consensus 530 kYIenPLL 537 (842)
+||+||--
T Consensus 197 kfi~npRH 204 (670)
T KOG0238|consen 197 KFIDNPRH 204 (670)
T ss_pred HhccCCce
Confidence 99998854
No 94
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=65.69 E-value=6 Score=44.62 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=33.5
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCCCCC-CCChhhHHhHHHHHHHHHHHcCcc
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISPSLH-SSSPLDLAVKGPLVQDLFNIVGFH 719 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~-s~SplD~~VK~~LI~D~L~L~gi~ 719 (842)
....++|+|+..|.+|++|+||.|..---. .-.-.+..+-.+++-+++.-..+.
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~PsG~gyalenR~~~~r~~p~l~~~~~v~ 120 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRAPSGLGYALENRRAMSRVFPELFRDANVR 120 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS---HHHHHHHHHHHHHH-HHHHHHS-B-
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCCCcHHHHHHHHHHHHHHhChhhhhhcCcC
Confidence 346799999999999999999999953332 333445667777777777766654
No 95
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=65.65 E-value=39 Score=37.72 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.8
Q ss_pred eeeeeeeEEecCC-CceEEEEeecCCC
Q psy16955 668 YELFGIDILLDSK-LKPWLLEVNISPS 693 (842)
Q Consensus 668 FELfGfDfLLDed-LKPWLLEVN~sPS 693 (842)
.+-|-|||-++.+ .++||||+|.--.
T Consensus 214 ~~~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 214 LDNYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CCCEEEEEEEcCCCCeEEEEEecCCcc
Confidence 3568999999999 9999999997443
No 96
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=63.16 E-value=54 Score=37.35 Aligned_cols=65 Identities=26% Similarity=0.468 Sum_probs=49.7
Q ss_pred ccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccCC------------CCcceeeecccCccc
Q psy16955 470 YVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR------------KMPLVVQKYLDDPYL 537 (842)
Q Consensus 470 fiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~------------~~~~VVQkYIenPLL 537 (842)
|.+-..+++|.+..++- +-.-++|| .+++-|+|-.++++.+++.. ....||..+|+
T Consensus 132 Y~fa~s~~e~~~a~~~i--GfPcvvKP------vMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---- 199 (394)
T COG0027 132 YRFADSLEELRAAVEKI--GFPCVVKP------VMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---- 199 (394)
T ss_pred ccccccHHHHHHHHHHc--CCCeeccc------ccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEec----
Confidence 44445677787777653 34689999 99999999999999887742 45689999985
Q ss_pred CCCCeeEEEEEEEE
Q psy16955 538 INDTKFDLRLYVLV 551 (842)
Q Consensus 538 IdGrKFDLRvYVLV 551 (842)
||+-+-+|.
T Consensus 200 -----fd~EiTlLt 208 (394)
T COG0027 200 -----FDFEITLLT 208 (394)
T ss_pred -----ceEEEEEEE
Confidence 888876664
No 97
>KOG2983|consensus
Probab=53.05 E-value=47 Score=36.83 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.0
Q ss_pred eeeeeeEEecCCCceEEEEeec
Q psy16955 669 ELFGIDILLDSKLKPWLLEVNI 690 (842)
Q Consensus 669 ELfGfDfLLDedLKPWLLEVN~ 690 (842)
|-|-||+-++...|+|||.+|.
T Consensus 229 edfvfDVYi~k~~kv~lID~Np 250 (334)
T KOG2983|consen 229 EDFVFDVYITKERKVWLIDFNP 250 (334)
T ss_pred CCeeEEEEecCCCcEEEEeccC
Confidence 6789999999999999999875
No 98
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=49.18 E-value=31 Score=40.01 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=37.6
Q ss_pred eEEEcCCCccCCCCCCCCccEEEEccccccC------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 491 KWIVKPIHFWFQPASARGIGIKVVHKWNQIP------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 491 ~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
.|+.|| ..|-.|.+|.++..-..+. ....+|.|+|+.=| -++|.-.-|..|+
T Consensus 309 ~yV~KP------i~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~ 366 (397)
T PHA02117 309 KYVSKP------LLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWM 366 (397)
T ss_pred CEEecc------CCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEE
Confidence 499999 8999999999996532221 24778999999866 5677644444444
No 99
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=48.28 E-value=2.1e+02 Score=32.82 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=41.6
Q ss_pred eeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC---------------CCCcceee
Q psy16955 465 FTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP---------------RKMPLVVQ 529 (842)
Q Consensus 465 FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~---------------~~~~~VVQ 529 (842)
-+|+.|.=|+|.+ ...|||. +..-+|+|-++..+.+++. .-+.+.+|
T Consensus 138 ~~P~~~~~PeeId------------r~VIVK~------pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~Ie 199 (361)
T COG1759 138 RIPKKYKSPEEID------------RPVIVKL------PGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIE 199 (361)
T ss_pred CCCcccCChHHcC------------CceEEec------CCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceee
Confidence 3777777676653 5799999 6666799999998865442 12468899
Q ss_pred ecccCcccCCCCeeEEEE
Q psy16955 530 KYLDDPYLINDTKFDLRL 547 (842)
Q Consensus 530 kYIenPLLIdGrKFDLRv 547 (842)
+||- |-.|-+-.
T Consensus 200 EYv~------G~~f~~~y 211 (361)
T COG1759 200 EYVV------GAPFYFHY 211 (361)
T ss_pred EEee------ccceeeee
Confidence 9986 65555543
No 100
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=33.27 E-value=2e+02 Score=33.61 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=58.0
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccC-----------------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP-----------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~-----------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
....|+|- .+|.-|.||.-+.+.+++. .-...|||+.|..==.+++.
T Consensus 257 ~PfViVKA------DaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~a---------- 320 (403)
T TIGR02049 257 QPYVIVKA------DAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEA---------- 320 (403)
T ss_pred CCeEEEEc------CCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCc----------
Confidence 46789999 9999999999998866652 12568999998522222332
Q ss_pred eecCCceEEEEc----CceEeeecccCCCCCCcccCcceeeccccc
Q psy16955 552 TSFNPLRIYLYD----NGLVRFASVKYSANSETLQDRYMHLTNYSI 593 (842)
Q Consensus 552 TS~dPLRIYlY~----eGLVRfAt~kYs~~~~nl~d~~~HLTNySI 593 (842)
.-.|+ ||+-+ .|+-|..+..=. .+||+...||.---+.
T Consensus 321 -vAEPV-VYmid~~vvggfYRvh~~Rg~--dENLNapG~~F~plaf 362 (403)
T TIGR02049 321 -VAEPV-VYMIGRTVTGGFYRVHTGRGV--DENLNAPGMHFVPLSF 362 (403)
T ss_pred -ccCce-EEEECCEEeEEEEEecCCCCC--cccCCCCCCeeeeccc
Confidence 12454 55554 477787776533 4688888899877654
No 101
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=32.53 E-value=9e+02 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.4
Q ss_pred eeeEEecCC-CceEEEEeecCCCCCCCC
Q psy16955 672 GIDILLDSK-LKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 672 GfDfLLDed-LKPWLLEVN~sPSL~s~S 698 (842)
-++|.+|.+ ++.|+||||..+|=++.-
T Consensus 269 niQ~av~~~~~~~~viEvNpRvSrssaL 296 (400)
T COG0458 269 NIQFAVDPGGGELYVIEINPRVSRSSAL 296 (400)
T ss_pred ceeEEEcCCCceEEEEEecCCcCcchhh
Confidence 478889886 599999999888776543
No 102
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=31.00 E-value=1.8e+02 Score=33.69 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=21.9
Q ss_pred eeeee-eeEEecCCCceEEEEeec-CCCC
Q psy16955 668 YELFG-IDILLDSKLKPWLLEVNI-SPSL 694 (842)
Q Consensus 668 FELfG-fDfLLDedLKPWLLEVN~-sPSL 694 (842)
--||| |||..|.++++-|||.|. .|.+
T Consensus 96 ~sLygRfDl~~dg~g~iKLlEyNADTPTs 124 (387)
T COG0754 96 PSLYGRFDLAYDGDGPIKLLEYNADTPTS 124 (387)
T ss_pred cceeeeeEEEecCCCCeEEEEecCCCchH
Confidence 34565 999999999999999998 4443
No 103
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=30.15 E-value=1.1e+02 Score=37.81 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=36.1
Q ss_pred eEEEcCCCccCCCCCCCCccEEEEcc-ccccC------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 491 KWIVKPIHFWFQPASARGIGIKVVHK-WNQIP------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 491 ~WIvKP~~~~~~~~gsRGrGI~vi~~-l~qI~------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
.|+.|| ..|-.|.+|.|+.. -..+. ....+|.|+|+.=| .++|...-|..|+
T Consensus 529 ~yV~KP------i~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~ 587 (619)
T PRK10507 529 GYAVKP------IAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFT 587 (619)
T ss_pred CeEecc------CCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEE
Confidence 499999 89999999999975 21111 24678999999866 4465444444433
No 104
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=27.57 E-value=68 Score=36.34 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=62.8
Q ss_pred EEeecCCCCCCCCCcccccceEEEecCC--chHHHHHHHHhcC---CEEecCCCCeEEEEcccCC--chhhhc-cCcCCe
Q psy16955 360 IRFSSHDDQTQLFPSPAAKHLKWKLSPI--TPVVVRKTILNTG---YRLVRKSSEWCGTWGKHMK--SLSFRT-LKESQK 431 (842)
Q Consensus 360 i~F~~~~~~~~~~p~~~rk~L~wk~s~~--~~~lVr~~L~~~G---F~~v~~~~dW~~~W~~~~k--~~~~~~-L~p~Qk 431 (842)
++.-+++...+....-.|..+.|.-.-. .-...++..+.+| |-++.-.+-...+-.++.. +..|.- +-+||.
T Consensus 29 v~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekhglkg~LLva~GDgev~lvSq~reeLSa~f~v~lp~w~~ 108 (415)
T COG3919 29 VLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYREELSAFFEVPLPDWAL 108 (415)
T ss_pred EEEEecCCCCcchhhhheeeeccCCCCcccHHHHHHHHHhhcCcCceEEEecCCceeeehHhhHHHHHHHhcCCCCcHHH
Confidence 3444555554444445566677764322 2356677777765 4445433333333222211 111221 122222
Q ss_pred ecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcC
Q psy16955 432 INHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKP 496 (842)
Q Consensus 432 VNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP 496 (842)
-..++.|-.|++... .+| -=+|+||.+.++.+.+...+ .-..|+||
T Consensus 109 ------l~wlceKPllY~ra~----elg----l~~P~Ty~v~S~~d~~~~el-----~FPvILKP 154 (415)
T COG3919 109 ------LRWLCEKPLLYNRAE----ELG----LPYPKTYLVNSEIDTLVDEL-----TFPVILKP 154 (415)
T ss_pred ------HHHHhhCcHHHHHHH----HhC----CCCcceEEecchhhhhhhhe-----eeeEEecC
Confidence 135788888876543 344 24899999988777666554 23489999
No 105
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=1.1e+02 Score=36.30 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCCceeeeeeeEEecCCCceEEEEeec-CCCCCCCChhhHHhHHHHHHHHHHHcCcc
Q psy16955 664 RYCSYELFGIDILLDSKLKPWLLEVNI-SPSLHSSSPLDLAVKGPLVQDLFNIVGFH 719 (842)
Q Consensus 664 r~ncFELfGfDfLLDedLKPWLLEVN~-sPSL~s~SplD~~VK~~LI~D~L~L~gi~ 719 (842)
....-.+.|+|++-|.+|+.|+||=|. .||=.+-.=.+...-.+++-|++.-.+++
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely~~~~vr 197 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELYEELRVR 197 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHHhhcCCc
Confidence 345678899999999999999999998 78776655556667777777777666554
No 106
>KOG0237|consensus
Probab=25.00 E-value=1.4e+03 Score=28.56 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=47.1
Q ss_pred HHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc-----------
Q psy16955 452 LKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI----------- 520 (842)
Q Consensus 452 ~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI----------- 520 (842)
+.++.++|..-..| +||--|++...|.+.. .....++|- ...+-|+|+.+..+.++-
T Consensus 113 K~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~----~~~~~ViKA------dGLAAGKGViv~~~~~EA~eAv~sIl~~~ 180 (788)
T KOG0237|consen 113 KDFMHRHNIPTAKY--KTFTDPEEAKSFIQSA----TDKALVIKA------DGLAAGKGVIVAKSKEEAFEAVDSILVKK 180 (788)
T ss_pred HHHHHhcCCCccee--eeeCCHHHHHHHHHhC----CCcceEEee------cccccCCceEeeccHHHHHHHHHHHHhhh
Confidence 34555666433333 5677777777777654 335689999 899999999998875432
Q ss_pred ---CCCCcceeeeccc
Q psy16955 521 ---PRKMPLVVQKYLD 533 (842)
Q Consensus 521 ---~~~~~~VVQkYIe 533 (842)
...+..||.+.++
T Consensus 181 ~fg~AG~tvViEE~LE 196 (788)
T KOG0237|consen 181 VFGSAGKTVVIEELLE 196 (788)
T ss_pred hhccccceEehhhhcC
Confidence 1245677777765
No 107
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=24.37 E-value=31 Score=30.19 Aligned_cols=26 Identities=38% Similarity=0.864 Sum_probs=20.4
Q ss_pred cCCCCCccccc------ccCceeccccchhhh
Q psy16955 15 GPLSSTPYCMD------SLGYEVCCPKCDRAV 40 (842)
Q Consensus 15 ~~~~~~~~~~~------~~~~~~~~~~~~~~~ 40 (842)
-|.-+-|+-++ -||+++.|.|||++.
T Consensus 27 PPw~~RpWV~t~~gR~~~lG~~l~C~kCd~~~ 58 (61)
T PF12088_consen 27 PPWQNRPWVLTEEGRQSMLGQELNCKKCDRGA 58 (61)
T ss_pred CCCcccCcEEcHHHHHHhcCCeecccccccCC
Confidence 46667777665 489999999999864
No 108
>KOG3620|consensus
Probab=24.17 E-value=95 Score=40.71 Aligned_cols=82 Identities=33% Similarity=0.528 Sum_probs=58.5
Q ss_pred ccccccCCCCCCCC-CCCCC---CCCCCCCccccccCCC---CCCCCCCCcccCCCCccCCCCcccccccccccccCCCC
Q psy16955 235 EPRKSLGKNSPSHA-GDTPF---PSSPSPHLSEKRSRPQ---KKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPA 307 (842)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (842)
-|+|.+||.-+-|- -.+|+ |-+|+|.--.|-+-+| |.|+..-|++-||+.+++-.++.++.|-++++ .||+.
T Consensus 1178 s~~k~~~k~~~kh~p~~~p~~~QP~~pep~sknKg~P~Q~~vk~Pkp~kKgn~kp~~~vlk~~~~~~d~~s~~~-ipP~~ 1256 (1626)
T KOG3620|consen 1178 SPAKVLGKTKPKHEPVSTPVADQPVVPEPPSKNKGSPPQQEVKSPKPKKKGNKKPEQRVLKEQNGSADKMSKTS-IPPGR 1256 (1626)
T ss_pred ChhHhhcccccccccccCccccCCCCCCcccccCCCCcccCCCCCCcccccCCCchhhhhccccccccccccCC-CCCCc
Confidence 46788999888887 55666 3444554444544444 34666778899999999999999999999999 77776
Q ss_pred CCcccccccc
Q psy16955 308 TSSHRRQESV 317 (842)
Q Consensus 308 ~~~~~~~~~~ 317 (842)
....-|+..+
T Consensus 1257 eee~erkkk~ 1266 (1626)
T KOG3620|consen 1257 EEERERKKKD 1266 (1626)
T ss_pred ccccccChhh
Confidence 5444444333
No 109
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=23.14 E-value=2.7e+02 Score=32.57 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=48.3
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCC-----------------CCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR-----------------KMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~-----------------~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
....|||- .+|.-|.||..+++.+++.. -...|||+.|..=-.+++.--
T Consensus 260 ~PfV~VKA------D~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avA-------- 325 (404)
T PF08886_consen 260 KPFVFVKA------DAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVA-------- 325 (404)
T ss_dssp ---EEEEE------E-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEE--------
T ss_pred CceEEEEc------CCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccc--------
Confidence 46789999 99999999999999887731 256899999974334455221
Q ss_pred eecCCceEEEEc----CceEeeecccCCCCCCcccCcceeeccccccc
Q psy16955 552 TSFNPLRIYLYD----NGLVRFASVKYSANSETLQDRYMHLTNYSINK 595 (842)
Q Consensus 552 TS~dPLRIYlY~----eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK 595 (842)
.|+ ||+-+ .|+-|..++.=. ..||+...||.--.++..
T Consensus 326 ---EPV-VYmid~~vvggfyRvh~~rg~--deNLNapGm~F~plaf~~ 367 (404)
T PF08886_consen 326 ---EPV-VYMIDRYVVGGFYRVHTERGV--DENLNAPGMHFVPLAFEQ 367 (404)
T ss_dssp ---EEE-EEEETTEEEEEEEEEES--ST--TTTTS--TT-EEEEE--S
T ss_pred ---cce-EEEECCEEEEEEEEecCCCCC--ccCCCCCCCEeeeccccc
Confidence 232 55554 577788776643 468888889988766543
Done!