Query psy16955
Match_columns 842
No_of_seqs 303 out of 1334
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 1.6E-64 5.5E-69 554.2 21.5 306 388-722 16-363 (380)
2 2q7d_A Inositol-tetrakisphosph 98.7 5.2E-07 1.8E-11 98.0 18.4 104 431-550 104-214 (346)
3 1iow_A DD-ligase, DDLB, D-ALA\ 98.6 1E-06 3.5E-11 90.8 17.5 172 441-698 94-281 (306)
4 4eg0_A D-alanine--D-alanine li 98.6 8.4E-07 2.9E-11 93.5 16.9 175 443-700 107-292 (317)
5 4fu0_A D-alanine--D-alanine li 98.6 2.5E-06 8.6E-11 91.9 19.8 69 632-716 273-347 (357)
6 2i87_A D-alanine-D-alanine lig 98.5 4.3E-06 1.5E-10 90.0 20.4 176 442-698 128-317 (364)
7 1e4e_A Vancomycin/teicoplanin 98.5 3.1E-06 1.1E-10 90.2 19.0 143 490-698 166-316 (343)
8 1z2n_X Inositol 1,3,4-trisphos 98.5 4.2E-06 1.4E-10 87.6 19.2 90 440-550 95-188 (324)
9 1i7n_A Synapsin II; synapse, p 98.5 1.1E-06 3.7E-11 94.6 14.3 75 456-550 126-208 (309)
10 3se7_A VANA; alpha-beta struct 98.4 2.3E-06 7.8E-11 91.6 15.6 53 632-700 266-318 (346)
11 3i12_A D-alanine-D-alanine lig 98.4 4.2E-06 1.4E-10 90.5 17.5 52 632-699 276-327 (364)
12 1pk8_A RAT synapsin I; ATP bin 98.4 1.3E-06 4.4E-11 97.6 13.6 156 456-702 238-404 (422)
13 3e5n_A D-alanine-D-alanine lig 98.4 4.5E-06 1.5E-10 91.5 17.5 53 632-700 295-347 (386)
14 3tqt_A D-alanine--D-alanine li 98.4 4.9E-06 1.7E-10 90.9 16.9 52 632-699 277-328 (372)
15 2p0a_A Synapsin-3, synapsin II 98.4 1.4E-06 4.9E-11 95.0 12.1 75 456-550 143-225 (344)
16 3k3p_A D-alanine--D-alanine li 98.3 4.5E-06 1.6E-10 91.6 15.2 52 632-699 297-348 (383)
17 1uc8_A LYSX, lysine biosynthes 98.3 3.6E-06 1.2E-10 85.3 12.0 86 440-550 85-184 (280)
18 2fb9_A D-alanine:D-alanine lig 98.3 7.6E-06 2.6E-10 86.8 14.0 48 634-698 249-296 (322)
19 1ehi_A LMDDL2, D-alanine:D-lac 98.2 2.2E-05 7.6E-10 85.3 17.4 51 632-698 277-327 (377)
20 2r85_A PURP protein PF1517; AT 98.2 2.9E-06 9.9E-11 88.6 8.7 30 666-695 262-291 (334)
21 3lwb_A D-alanine--D-alanine li 98.2 2E-05 6.8E-10 86.0 14.8 50 632-698 292-341 (373)
22 3r5x_A D-alanine--D-alanine li 98.2 1.2E-05 4.1E-10 83.5 12.5 81 442-549 96-187 (307)
23 3ax6_A Phosphoribosylaminoimid 98.1 3.1E-05 1.1E-09 83.3 15.9 167 440-696 97-266 (380)
24 3q2o_A Phosphoribosylaminoimid 98.1 6.9E-05 2.4E-09 81.2 17.2 74 441-533 110-192 (389)
25 3k5i_A Phosphoribosyl-aminoimi 98.0 0.00015 5.1E-09 79.6 19.1 73 633-722 249-322 (403)
26 2z04_A Phosphoribosylaminoimid 98.0 8.4E-05 2.9E-09 79.3 15.0 86 441-551 90-183 (365)
27 2pvp_A D-alanine-D-alanine lig 97.9 4.2E-05 1.4E-09 83.3 12.3 68 632-718 282-349 (367)
28 3ouz_A Biotin carboxylase; str 97.9 0.00021 7.2E-09 78.8 17.1 89 441-552 117-220 (446)
29 3vot_A L-amino acid ligase, BL 97.9 8.7E-05 3E-09 81.1 13.0 28 668-695 267-294 (425)
30 3orq_A N5-carboxyaminoimidazol 97.8 0.0002 6.8E-09 77.7 15.5 56 666-722 249-305 (377)
31 1ulz_A Pyruvate carboxylase N- 97.8 0.00028 9.6E-09 77.7 16.7 86 441-552 112-215 (451)
32 4e4t_A Phosphoribosylaminoimid 97.8 0.00032 1.1E-08 77.6 16.4 55 667-722 279-334 (419)
33 2vpq_A Acetyl-COA carboxylase; 97.8 0.00036 1.2E-08 76.8 16.4 50 490-552 152-215 (451)
34 4dim_A Phosphoribosylglycinami 97.7 0.0003 1E-08 76.0 14.5 86 441-549 107-202 (403)
35 1kjq_A GART 2, phosphoribosylg 97.7 0.00043 1.5E-08 74.3 15.5 49 490-551 149-209 (391)
36 2pn1_A Carbamoylphosphate synt 97.7 0.00024 8.1E-09 74.4 13.3 76 441-533 112-191 (331)
37 1gsa_A Glutathione synthetase; 97.7 4.1E-05 1.4E-09 78.8 7.1 71 465-550 134-214 (316)
38 3aw8_A PURK, phosphoribosylami 97.7 0.0009 3.1E-08 71.6 17.4 87 441-551 94-187 (369)
39 3lp8_A Phosphoribosylamine-gly 97.7 0.00032 1.1E-08 78.1 13.9 76 441-533 121-210 (442)
40 3df7_A Putative ATP-grAsp supe 97.7 0.00026 8.8E-09 75.0 12.4 44 489-551 133-176 (305)
41 2ip4_A PURD, phosphoribosylami 97.7 0.00076 2.6E-08 73.5 16.4 86 441-551 99-194 (417)
42 3mjf_A Phosphoribosylamine--gl 97.6 0.00034 1.1E-08 77.5 13.2 49 668-716 270-318 (431)
43 2yw2_A Phosphoribosylamine--gl 97.6 0.00079 2.7E-08 73.4 15.8 77 440-533 99-189 (424)
44 2xcl_A Phosphoribosylamine--gl 97.6 0.00052 1.8E-08 74.8 13.3 86 441-551 100-199 (422)
45 2yrx_A Phosphoribosylglycinami 97.5 0.00074 2.5E-08 74.7 13.9 84 441-551 121-220 (451)
46 2w70_A Biotin carboxylase; lig 97.5 0.0019 6.4E-08 71.1 16.9 86 440-551 112-216 (449)
47 1vkz_A Phosphoribosylamine--gl 97.5 0.0021 7.1E-08 70.4 16.7 78 632-721 242-319 (412)
48 2dwc_A PH0318, 433AA long hypo 97.4 0.0023 8E-08 70.0 16.4 46 633-695 254-299 (433)
49 2dzd_A Pyruvate carboxylase; b 97.4 0.0046 1.6E-07 68.3 18.8 77 440-533 117-209 (461)
50 3ln6_A Glutathione biosynthesi 97.4 0.00017 5.9E-09 85.9 7.6 132 388-550 429-578 (750)
51 2qk4_A Trifunctional purine bi 97.3 0.0023 7.9E-08 70.6 15.2 87 440-551 125-226 (452)
52 1w96_A ACC, acetyl-coenzyme A 97.3 0.0029 9.9E-08 72.3 16.0 38 490-533 235-282 (554)
53 3eth_A Phosphoribosylaminoimid 97.3 0.016 5.4E-07 63.1 20.5 73 633-723 201-274 (355)
54 3glk_A Acetyl-COA carboxylase 97.3 0.0051 1.7E-07 70.6 17.4 38 490-533 229-276 (540)
55 3vmm_A Alanine-anticapsin liga 97.2 0.0036 1.2E-07 70.5 15.6 79 440-535 136-234 (474)
56 3jrx_A Acetyl-COA carboxylase 97.2 0.0073 2.5E-07 70.2 18.1 39 490-534 245-293 (587)
57 3n6r_A Propionyl-COA carboxyla 97.1 0.0012 4.2E-08 77.7 9.9 80 440-535 112-206 (681)
58 3u9t_A MCC alpha, methylcroton 97.0 0.0012 4.2E-08 77.6 9.4 46 633-694 276-321 (675)
59 3ln7_A Glutathione biosynthesi 97.0 0.0018 6E-08 77.4 10.3 86 441-550 487-584 (757)
60 3t7a_A Inositol pyrophosphate 96.9 0.015 5.2E-07 62.9 15.4 109 422-550 76-216 (330)
61 1a9x_A Carbamoyl phosphate syn 96.6 0.045 1.6E-06 67.5 18.7 38 490-533 710-757 (1073)
62 3hbl_A Pyruvate carboxylase; T 96.5 0.014 4.7E-07 72.7 13.0 40 490-535 156-209 (1150)
63 1a9x_A Carbamoyl phosphate syn 96.2 0.02 7E-07 70.6 12.6 76 441-533 126-211 (1073)
64 4ffl_A PYLC; amino acid, biosy 96.2 0.039 1.3E-06 58.8 13.0 38 490-533 126-164 (363)
65 2qf7_A Pyruvate carboxylase pr 96.1 0.023 7.9E-07 70.8 12.2 46 633-694 269-315 (1165)
66 3va7_A KLLA0E08119P; carboxyla 95.9 0.039 1.3E-06 69.2 13.0 38 490-533 181-232 (1236)
67 3n6x_A Putative glutathionylsp 95.8 0.0063 2.2E-07 69.1 5.1 125 431-573 309-453 (474)
68 2r7k_A 5-formaminoimidazole-4- 95.1 0.04 1.4E-06 60.3 8.3 30 666-695 289-318 (361)
69 2pbz_A Hypothetical protein; N 94.1 0.13 4.6E-06 55.4 9.0 38 489-533 125-167 (320)
70 2cqy_A Propionyl-COA carboxyla 91.3 0.093 3.2E-06 45.7 2.5 40 490-535 46-99 (108)
71 2io8_A Bifunctional glutathion 69.7 4.5 0.00015 47.4 5.6 76 439-536 493-575 (619)
72 2vob_A Trypanothione synthetas 53.2 7.6 0.00026 45.9 3.6 87 439-548 508-601 (652)
73 3k1t_A Glutamate--cysteine lig 30.3 1.8E+02 0.0063 32.6 9.6 85 489-593 277-382 (432)
74 3n6x_A Putative glutathionylsp 27.9 43 0.0015 38.2 4.3 52 668-719 142-194 (474)
75 1wr2_A Hypothetical protein PH 23.9 64 0.0022 32.3 4.4 38 490-533 57-117 (238)
76 4e9m_A Nucleotide-binding olig 22.1 5 0.00017 38.9 -3.9 17 680-696 105-121 (144)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=1.6e-64 Score=554.22 Aligned_cols=306 Identities=29% Similarity=0.484 Sum_probs=231.1
Q ss_pred chHHHHHHHHhcC-CEEec-CCCCeEEEEcccCCchhhhcc----CcCCeecccCCCCcccchHHHHHHHHHHHHHcCCC
Q psy16955 388 TPVVVRKTILNTG-YRLVR-KSSEWCGTWGKHMKSLSFRTL----KESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDK 461 (842)
Q Consensus 388 ~~~lVr~~L~~~G-F~~v~-~~~dW~~~W~~~~k~~~~~~L----~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~ 461 (842)
-..+|+++|.+.| |+++. ++.+|+++|++... ..|..| .++|+||||||+++||||+.|+++|++++ .+..
T Consensus 16 vy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~-~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~--~~~~ 92 (380)
T 3tig_A 16 VYAEVAKILLASGQWKRLKRDNPKFNLMLGERNR-LPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP--ELTE 92 (380)
T ss_dssp HHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSS-CCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH--HHHT
T ss_pred HHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCC-CCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh--hccc
Confidence 3589999999999 88775 46789999987542 224444 56899999999999999999999999853 3567
Q ss_pred CCCeeeccccC-chh-----------------------HHHHHHHhhh---cCCcceEEEcCCCccCCCCCCCCccEEEE
Q psy16955 462 EFGFTPRTYVL-PGD-----------------------DKRLRASWER---NCGNIKWIVKPIHFWFQPASARGIGIKVV 514 (842)
Q Consensus 462 ~~~FlP~TfiL-P~d-----------------------~~~f~~~~~k---~~~~~~WIvKP~~~~~~~~gsRGrGI~vi 514 (842)
.++|+|+||+| |.+ +.+|++++.+ .+.++.||+|| .+++||+||+++
T Consensus 93 ~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP------~~~srG~GI~l~ 166 (380)
T 3tig_A 93 TCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKS------SSGAKGEGILIS 166 (380)
T ss_dssp TCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEE------SCC----CCBCC
T ss_pred ccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeC------CccCCCCCEEEe
Confidence 89999999999 864 4568777754 46789999999 999999999999
Q ss_pred ccccccC-----CCCcceeeecccCcccC--CCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCccee
Q psy16955 515 HKWNQIP-----RKMPLVVQKYLDDPYLI--NDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMH 587 (842)
Q Consensus 515 ~~l~qI~-----~~~~~VVQkYIenPLLI--dGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~H 587 (842)
++++++. ....+|||+||+||||| +|+|||||+|||||| ||+||+|++|++|||+++|+. .+++|.++|
T Consensus 167 ~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~--~~~~~~~~H 242 (380)
T 3tig_A 167 SDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSH 242 (380)
T ss_dssp SCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC----------------
T ss_pred CCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc--cchhhhhhh
Confidence 9988874 35789999999999999 999999999999998 999999999999999999984 578899999
Q ss_pred ecccccccC-CCcCCCCccccccCCcccchHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCC
Q psy16955 588 LTNYSINKM-SSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDV-AALQDSIVDVVIKTMICGEHSISQLTRANQQSRY 665 (842)
Q Consensus 588 LTNySINK~-s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~-~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ 665 (842)
|||++|||+ +++|...+ .|++|++++|++||++.+|.+. +.||.+|+++|+++++|+++.+... ..+.
T Consensus 243 LTN~~iqk~~~~~y~~~~-----~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~-----~~~~ 312 (380)
T 3tig_A 243 LTNHCIQKEHSKNYGRYE-----EGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTK-----YLPY 312 (380)
T ss_dssp -------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCT-----TSSS
T ss_pred cccccccccccccccccc-----CCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCC
Confidence 999999996 45676433 5789999999999998778776 5899999999999999998876432 1246
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCC
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPE 722 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~ 722 (842)
+|||+||+|||||++++|||||||.+|++.. .+..+|++++|+++...+..
T Consensus 313 ~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavdp~f~ 363 (380)
T 3tig_A 313 HSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAISSVFP 363 (380)
T ss_dssp EECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTTTTSC
T ss_pred ceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcccccC
Confidence 7999999999999999999999999999974 38899999999998876443
No 2
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.67 E-value=5.2e-07 Score=98.01 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=68.4
Q ss_pred eecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCch----hHHHHHHHhhhcCCcceEEEcCCCccCCCC--
Q psy16955 431 KINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPG----DDKRLRASWERNCGNIKWIVKPIHFWFQPA-- 504 (842)
Q Consensus 431 kVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~----d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~-- 504 (842)
.+|-..+...+.+|..+.+.|.+..-..+ ..-=-+|.|+++.. +..+... ..+-+-.+|+|| ..
T Consensus 104 vinp~~ai~~~~dk~~~~~~L~k~~~~~~-~~gIp~P~t~~~~~~~~~~~~~~~~---~~~lg~P~VvKP------~~g~ 173 (346)
T 2q7d_A 104 VLDPLPAIRTLLDRSKSYELIRKIEAYME-DDRICSPPFMELTSLCGDDTMRLLE---KNGLTFPFICKT------RVAH 173 (346)
T ss_dssp EESCHHHHHHTTBHHHHHHHHHHHHHHHC-BTTEECCCEEEECSCCCTTHHHHHH---HTTCCSSEEEEC------SBCS
T ss_pred EcCCHHHHHHhhhHHHHHHHHHhhccccc-CCCCCCCCEEEEeCCCHHHHHHHHH---hcCCCCCEEEEe------cCCC
Confidence 45666666667899999888876422111 01124799999864 3333332 222345799999 43
Q ss_pred CCCCccEEEEccccccCC-CCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 505 SARGIGIKVVHKWNQIPR-KMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 505 gsRGrGI~vi~~l~qI~~-~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
|+.|.|+.++.+.+++.. ..+++||+||+. +| .|+|+||+
T Consensus 174 Gs~s~~v~~v~~~~~l~~~~~~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 174 GTNSHEMAIVFNQEGLNAIQPPCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp STTCCEEEEECSGGGTTC--CCEEEEECCCC----TT--EEEEEEEE
T ss_pred cceeeeeEEecCHHHHHhcCCCEEEEEeeCC----CC--eEEEEEEE
Confidence 344889999988776654 467999999973 35 69999996
No 3
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.60 E-value=1e-06 Score=90.83 Aligned_cols=172 Identities=20% Similarity=0.193 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHH--------HhhhcCCcceEEEcCCCccCCCCCCCCccEE
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRA--------SWERNCGNIKWIVKPIHFWFQPASARGIGIK 512 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~--------~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~ 512 (842)
..+|..+.+.++ +.|- -+|+|+.+... ++.+ ..++ -+..+|+|| ..++.|+||.
T Consensus 94 ~~dK~~~~~~l~----~~gi----~~p~~~~~~~~--~~~~~~~~~~~~~~~~--~~~p~vvKP------~~g~~~~gv~ 155 (306)
T 1iow_A 94 SMDKLRSKLLWQ----GAGL----PVAPWVALTRA--EFEKGLSDKQLAEISA--LGLPVIVKP------SREGSSVGMS 155 (306)
T ss_dssp HHCHHHHHHHHH----HTTC----CBCCEEEEEHH--HHHHCCCTHHHHHHHT--TCSSEEEEE------TTCCTTTTCE
T ss_pred HcCHHHHHHHHH----HCCC----CCCCeEEEchh--hhhccchhhhhhHHhc--cCCCEEEEe------CCCCCCCCEE
Confidence 456666655443 3452 27888776543 2322 2222 124699999 9999999999
Q ss_pred EEccccccC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCc
Q psy16955 513 VVHKWNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDR 584 (842)
Q Consensus 513 vi~~l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~ 584 (842)
++++.+++. ...+++||+||+ |+ ++++.++ +. +++ +.++..... .+
T Consensus 156 ~v~~~~el~~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~----~g-~~~----~~~~~~~~~------~~--- 209 (306)
T 1iow_A 156 KVVAENALQDALRLAFQHDEEVLIEKWLS------GP--EFTVAIL----GE-EIL----PSIRIQPSG------TF--- 209 (306)
T ss_dssp EESSGGGHHHHHHHHTTTCSEEEEEECCC------CC--EEEEEEE----TT-EEC----CCEEEECSS------SS---
T ss_pred EeCCHHHHHHHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE----CC-Ccc----ceEEEEeCC------Ce---
Confidence 998876542 256899999996 54 6777665 11 110 111111000 00
Q ss_pred ceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCC
Q psy16955 585 YMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSR 664 (842)
Q Consensus 585 ~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r 664 (842)
+..-+||.... .+..... .+ .+.+.++|.+++.+++.+.
T Consensus 210 ~~~~~~~~~g~--------------~~~~~p~-----------~l-~~~~~~~i~~~a~~~~~~l--------------- 248 (306)
T 1iow_A 210 YDYEAKFLSDE--------------TQYFCPA-----------GL-EASQEANLQALVLKAWTTL--------------- 248 (306)
T ss_dssp SCHHHHHTCSC--------------CEEESSC-----------CC-CHHHHHHHHHHHHHHHHHH---------------
T ss_pred EchhheecCCC--------------eeEEcCC-----------CC-CHHHHHHHHHHHHHHHHHc---------------
Confidence 00001111000 0000000 01 1334566666665554432
Q ss_pred CCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 665 YCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 665 ~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
++...+|+||++|++++|||||||..|.+...+
T Consensus 249 -g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 249 -GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp -TCCSEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred -CCceEEEEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 234688999999999999999999999987654
No 4
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.60 E-value=8.4e-07 Score=93.45 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCeeeccccCc--hhHHHHHHHh-hhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 443 RKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP--GDDKRLRASW-ERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 443 rKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP--~d~~~f~~~~-~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
+|..+.+.+. ..|-. +|+++.+. ++...+.+.. ..- +-.+|+|| ..++.|+||.++++.++
T Consensus 107 dK~~~k~~l~----~~Gip----~p~~~~~~~~~~~~~~~~~~~~~~--g~PvvvKP------~~~~~s~Gv~~v~~~~e 170 (317)
T 4eg0_A 107 DKFRTKLVWQ----QTGVP----TPPFETVMRGDDYAARATDIVAKL--GLPLFVKP------ASEGSSVAVLKVKTADA 170 (317)
T ss_dssp CHHHHHHHHH----HTTCC----CCCEEEEETTSCHHHHHHHHHHHH--CSCEEEEE------CC-----CCEEECSGGG
T ss_pred CHHHHHHHHH----HCCcC----CCCEEEEECchhHHHHHHHHHHhc--CCCEEEEe------CCCCCCCCEEEECCHHH
Confidence 5555544443 34532 56666654 2344443111 111 23699999 99999999999988766
Q ss_pred cC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcceeeccc
Q psy16955 520 IP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNY 591 (842)
Q Consensus 520 I~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~HLTNy 591 (842)
+. ....++||+||+. |+ ++++.|+-...-|.......+++. .|. .+|
T Consensus 171 l~~a~~~~~~~~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~-----~~~-------------~k~ 225 (317)
T 4eg0_A 171 LPAALSEAATHDKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFY-----DYH-------------AKY 225 (317)
T ss_dssp HHHHHHHHTTTCSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-----------------------------
T ss_pred HHHHHHHHHhCCCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCcee-----chh-------------hcc
Confidence 52 2467999999972 54 566655532211211111011100 000 000
Q ss_pred ccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeee
Q psy16955 592 SINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELF 671 (842)
Q Consensus 592 SINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELf 671 (842)
........... .+ .+.+.++|.+++.+.+.+. +|....
T Consensus 226 ---------~~g~~~~~~P~----------------~l-~~~~~~~l~~~a~~~~~~l----------------g~~G~~ 263 (317)
T 4eg0_A 226 ---------VANDTQYLIPC----------------GL-PAEQETELKRIARRAFDVL----------------GCTDWG 263 (317)
T ss_dssp -------------CEEESSC----------------SS-CHHHHHHHHHHHHHHHHTT----------------TCCSEE
T ss_pred ---------cCCCeeEEcCC----------------CC-CHHHHHHHHHHHHHHHHHh----------------CCCceE
Confidence 00000000000 11 1334566666666555442 344688
Q ss_pred eeeEEecCCCceEEEEeecCCCCCCCChh
Q psy16955 672 GIDILLDSKLKPWLLEVNISPSLHSSSPL 700 (842)
Q Consensus 672 GfDfLLDedLKPWLLEVN~sPSL~s~Spl 700 (842)
++||++|++++|||||||..|++...+-+
T Consensus 264 ~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 264 RADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp EEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred EEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 99999999999999999999999876643
No 5
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.56 E-value=2.5e-06 Score=91.93 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHh------H
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAV------K 705 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~V------K 705 (842)
+.+.++|+++..+++.+. +|-.+.++||++|+++++|+||||..|+|...|-+-... .
T Consensus 273 ~~~~~~i~~~A~~~~~aL----------------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~ 336 (357)
T 4fu0_A 273 AEAEKRIQEAAVTIYKAL----------------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSF 336 (357)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCH
Confidence 445677777777766552 455789999999999999999999999998776322111 2
Q ss_pred HHHHHHHHHHc
Q psy16955 706 GPLVQDLFNIV 716 (842)
Q Consensus 706 ~~LI~D~L~L~ 716 (842)
..||..++.++
T Consensus 337 ~~li~~li~~a 347 (357)
T 4fu0_A 337 SQMLDKLIGLY 347 (357)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 6
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.53 E-value=4.3e-06 Score=89.95 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeeeccccCchhH------HHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEc
Q psy16955 442 GRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDD------KRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVH 515 (842)
Q Consensus 442 trKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~------~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~ 515 (842)
.+|..+.+.++ ..|.. .|.++.+...- +.+....++- +-.+|+|| ..++.|+||.+++
T Consensus 128 ~dK~~~k~~l~----~~Gip----~p~~~~~~~~~~~~~~~~~~~~~~~~~--g~PvvvKP------~~g~~s~Gv~~v~ 191 (364)
T 2i87_A 128 MDKLVMKQLFE----HRGLP----QLPYISFLRSEYEKYEHNILKLVNDKL--NYPVFVKP------ANLGSSVGISKCN 191 (364)
T ss_dssp HSHHHHHHHHH----HHTCC----CCCEEEEEHHHHHHHHHHHHHHHHHHC--CSSEEEEE------SSCSSCTTCEEES
T ss_pred cCHHHHHHHHH----HCCCC----CCCEEEEechhhcccchhHHHHHHHhc--CCCEEEEe------CCCCCCCCEEEEC
Confidence 45655554443 34532 57777664321 1232222221 24699999 8999999999998
Q ss_pred cccccC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCccee
Q psy16955 516 KWNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMH 587 (842)
Q Consensus 516 ~l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~H 587 (842)
+.+++. ....+|||+||+ |+ ++++.|+... ++ .+...|-+.....-|. .
T Consensus 192 ~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~---~~~~~~e~~~~~~~~~-----------~ 248 (364)
T 2i87_A 192 NEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLGND-YP---EATWPGEVVKDVAFYD-----------Y 248 (364)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEESS-SC---EECCCEEECCSCCC--------------
T ss_pred CHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc---EEeeeEEEecCCCcCC-----------H
Confidence 866542 246899999997 64 6777766532 11 0111111111000010 0
Q ss_pred ecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCc
Q psy16955 588 LTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCS 667 (842)
Q Consensus 588 LTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~nc 667 (842)
-.+|. .+. .+.... . .+ .+.+.++|++++.+++.+. ++
T Consensus 249 ~~k~~---------~g~-----~~~~~p----------a-~l-~~~~~~~i~~~a~~~~~al----------------g~ 286 (364)
T 2i87_A 249 KSKYK---------DGK-----VQLQIP----------A-DL-DEDVQLTLRNMALEAFKAT----------------DC 286 (364)
T ss_dssp ----------------------CCEESS----------C-SS-CHHHHHHHHHHHHHHHHHT----------------TC
T ss_pred HHccc---------CCC-----eeEEeC----------C-CC-CHHHHHHHHHHHHHHHHHc----------------CC
Confidence 01110 000 000000 0 11 1345566777776665542 34
Q ss_pred eeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
..++++||++|++++|||||||..|++...+
T Consensus 287 ~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 287 SGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp CEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred CcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 4789999999999999999999999997654
No 7
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.53 E-value=3.1e-06 Score=90.23 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=82.2
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYL 561 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYl 561 (842)
-.+|+|| ..++.|.||.++++.+++. ...++|||+||+ |+ ++++.|+...-. ..+
T Consensus 166 ~PvvvKP------~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~-- 228 (343)
T 1e4e_A 166 YPVFVKP------ARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-LVV-- 228 (343)
T ss_dssp SCEEEEE------SSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEETTC-CEE--
T ss_pred CCEEEEe------CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEE--
Confidence 4699999 8999999999998876652 246899999996 65 566666643211 111
Q ss_pred EcCceEeeecccCCCCCCcccCcceeecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16955 562 YDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDV 641 (842)
Q Consensus 562 Y~eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~Ikdi 641 (842)
.--+-+.....-|+ .-++|.... ..... ..... . .+ .+.+.++|+++
T Consensus 229 ~~~~ei~~~~~~~~-----------~~~k~~~~~-----~~g~~-----~~~~p----------~-~l-~~~~~~~i~~~ 275 (343)
T 1e4e_A 229 GEVDQIRLQYGIFR-----------IHQEVEPEK-----GSENA-----VITVP----------A-DL-SAEERGRIQET 275 (343)
T ss_dssp CCCEEEEESSSCCC-----------GGGSSSGGG-----CCSSE-----EECSS----------C-SS-CHHHHHHHHHH
T ss_pred eeeEEEeeCCCccC-----------HhhcccccC-----CCCCe-----eEEeC----------C-CC-CHHHHHHHHHH
Confidence 11111111100011 001111000 00000 00000 0 11 13445667777
Q ss_pred HHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 642 VIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 642 IiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
+.+++.+. ++..++++||++|++++|||||||..|++...+
T Consensus 276 a~~~~~al----------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 276 VKKIYKTL----------------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp HHHHHHHT----------------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHc----------------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 76655542 355789999999999999999999999997655
No 8
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.51 E-value=4.2e-06 Score=87.62 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=59.8
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCC---ccEEEEcc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARG---IGIKVVHK 516 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRG---rGI~vi~~ 516 (842)
...+|..+.+.+.+ .|- -+|.|+.+.. .+++...+++.+-.-.+|+|| ..++.| .|+.++.+
T Consensus 95 ~~~dK~~~~~~l~~----~gi----~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP------~~g~g~~~s~gv~~v~~ 159 (324)
T 1z2n_X 95 MMSSREEINALLIK----NNI----PIPNSFSVKS-KEEVIQLLQSKQLILPFIVKP------ENAQGTFNAHQMKIVLE 159 (324)
T ss_dssp HHTBHHHHHHHHHH----TTC----CCSCEEEESS-HHHHHHHHHTTCSCSSEEEEE------SBCSSSSGGGEEEEECS
T ss_pred HHhCHHHHHHHHHH----CCC----CCCCEEEeCC-HHHHHHHHHHcCCCCCEEEee------CCCCCCccceeeEEEeC
Confidence 35577777665543 342 3788887743 233333333322224799999 888888 99999988
Q ss_pred ccccCC-CCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 517 WNQIPR-KMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 517 l~qI~~-~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
.+++.. ..++|||+||+. +| +|+|++|+
T Consensus 160 ~~~l~~~~~~~lvqe~i~~----~g--~~~~v~v~ 188 (324)
T 1z2n_X 160 QEGIDDIHFPCLCQHYINH----NN--KIVKVFCI 188 (324)
T ss_dssp GGGGTTCCSSEEEEECCCC----TT--CEEEEEEE
T ss_pred HHHHhhcCCCEEEEEccCC----CC--cEEEEEEE
Confidence 776643 467999999973 23 79999875
No 9
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.49 E-value=1.1e-06 Score=94.57 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=51.2
Q ss_pred HHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcce
Q psy16955 456 MKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLV 527 (842)
Q Consensus 456 kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~V 527 (842)
.+.|...+...|.||. +.. .+ .++. .+-..|+|| ..|++|+|+.++++.+++. ....++
T Consensus 126 ~~~gi~~~P~~~~~~~-~~~-~~---~~~~--~g~PvVvK~------~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~ 192 (309)
T 1i7n_A 126 KTLGGEKFPLIEQTYY-PNH-RE---MLTL--PTFPVVVKI------GHAHSGMGKVKVENHYDFQDIASVVALTQTYAT 192 (309)
T ss_dssp HHHCTTTSCBCCCEEE-SSG-GG---GSSC--CCSSEEEEE------SSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEE
T ss_pred HhCCCCCCCCCCEEee-CCh-hh---hhhc--cCCCEEEEe------CCCCceeCeEEECCHHHHHHHHHHHhccCCeEE
Confidence 3456545566677775 432 21 2222 234799999 9999999999998865441 135577
Q ss_pred eeecccCcccCCCCeeEEEEEEE
Q psy16955 528 VQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 528 VQkYIenPLLIdGrKFDLRvYVL 550 (842)
+|+||. ..+|+|++|+
T Consensus 193 vQefI~-------~g~DiRv~Vv 208 (309)
T 1i7n_A 193 AEPFID-------AKYDIRVQKI 208 (309)
T ss_dssp EEECCC-------EEEEEEEEEE
T ss_pred EEeecC-------CCceEEEEEE
Confidence 999996 3599999997
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.45 E-value=2.3e-06 Score=91.62 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Spl 700 (842)
+.+.++|.+++.+++.+. +|..++++||++|++++|||||||..|.+...+.+
T Consensus 266 ~~~~~~i~~~a~~~~~~l----------------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 266 TTSRSLVQDTAKAVYRAL----------------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 345566777766665542 34478999999999999999999999999876643
No 11
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.44 E-value=4.2e-06 Score=90.54 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|.+++.+++.+. +|..+.++||++|++++|||||||..|.+...+-
T Consensus 276 ~~~~~~i~~~a~~~~~al----------------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~ 327 (364)
T 3i12_A 276 SEVNDKIRAIAIQAYQTL----------------GCAGMARVDVFLTADNEVVINEINTLPGFTNISM 327 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCH
Confidence 344566777766655542 3557899999999999999999999999987663
No 12
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.43 E-value=1.3e-06 Score=97.63 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=93.0
Q ss_pred HHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcce
Q psy16955 456 MKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLV 527 (842)
Q Consensus 456 kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~V 527 (842)
.+.|...+...|.||. +...+ .++. .+-..|+|| ..|++|+|+.++++.+++. ....++
T Consensus 238 ~~~gi~~iP~t~~t~~-~~~~~----~i~~--~g~PvVvKp------~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~ 304 (422)
T 1pk8_A 238 KKLGTEEFPLIDQTFY-PNHKE----MLSS--TTYPVVVKM------GHAHSGMGKVKVDNQHDFQDIASVVALTKTYAT 304 (422)
T ss_dssp HHHCTTTSCBCCCEEE-SSGGG----CCCC--SSSSEEEEE------SSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEE
T ss_pred HhCCCCCCCCCceEec-Cchhh----hhhc--cCCCEEEEe------CCCCceeCeEEeCCHHHHHHHHHHHhccCceEE
Confidence 3446544555677764 43322 2221 234799999 9999999999998865432 134567
Q ss_pred eeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeec-ccCCCCCCcccCcceeecccccccCCCcCCCCccc
Q psy16955 528 VQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFAS-VKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDA 606 (842)
Q Consensus 528 VQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt-~kYs~~~~nl~d~~~HLTNySINK~s~nY~~~ed~ 606 (842)
||+||. .++|||++|+=- ++ + ++.|-+. ..|. ||.. . ..+.
T Consensus 305 vQEfI~-------~g~DIRv~VVGg-----~v-v---a~~Rr~~~g~Wr-------------tNvg-~---g~~e----- 346 (422)
T 1pk8_A 305 AEPFID-------AKYDVRVQKIGQ-----NY-K---AYMRTSVSGNWK-------------TNTG-S---AMLE----- 346 (422)
T ss_dssp EEECCC-------EEEEEEEEEETT-----EE-E---EEEEEESSSCSS-------------TTSS-C---EEEE-----
T ss_pred EEeecC-------CCceEEEEEECC-----EE-E---EEEEEcCCCCce-------------eccC-c---eeee-----
Confidence 999996 369999999721 21 1 3444442 2232 3321 0 0000
Q ss_pred cccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEE
Q psy16955 607 EACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLL 686 (842)
Q Consensus 607 ~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLL 686 (842)
.. -++ +++++++.++..+. ....++|+|++.+.++++++|
T Consensus 347 ------~i-------------~lt-----~e~~elA~kAaka~----------------gGldiaGVDlL~s~dG~~~Vl 386 (422)
T 1pk8_A 347 ------QI-------------AMS-----DRYKLWVDTCSEIF----------------GGLDICAVEALHGKDGRDHII 386 (422)
T ss_dssp ------EE-------------CCC-----HHHHHHHHHHTTGG----------------GCCSEEEEEEEEETTSCEEEE
T ss_pred ------ee-------------CCC-----HHHHHHHHHHHHHh----------------CCCCEEEEEEEEcCCCCEEEE
Confidence 00 111 23444544433321 135899999999999999999
Q ss_pred Eeec--CCCCCCCChhhH
Q psy16955 687 EVNI--SPSLHSSSPLDL 702 (842)
Q Consensus 687 EVN~--sPSL~s~SplD~ 702 (842)
|||. +|.+......|.
T Consensus 387 EVN~s~~P~~~g~~~~~~ 404 (422)
T 1pk8_A 387 EVVGSSMPLIGDHQDEDK 404 (422)
T ss_dssp EEECTTCCCCTTCHHHHH
T ss_pred EECCCCCCCccchhhhHH
Confidence 9999 999974443333
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.42 E-value=4.5e-06 Score=91.53 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Spl 700 (842)
+.+.++|.+++.+++.+. +|..+.++||++|++++|||||||..|.+...+-+
T Consensus 295 ~~~~~~i~~~a~~~~~aL----------------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~ 347 (386)
T 3e5n_A 295 AQTQQRIQQIAVQAYQAL----------------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVY 347 (386)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHH
Confidence 345567777776655542 34468899999999999999999999999877643
No 14
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.40 E-value=4.9e-06 Score=90.95 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|++++.+++.+. +|..+.++||++|++++|||||||..|+|...+-
T Consensus 277 ~~~~~~i~~~a~~~~~aL----------------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~ 328 (372)
T 3tqt_A 277 ESVTKQIQQIAIDAFKMV----------------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISM 328 (372)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCH
Confidence 445667777776666542 3557899999999999999999999999987663
No 15
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.38 E-value=1.4e-06 Score=95.00 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=50.5
Q ss_pred HHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC--------CCCcce
Q psy16955 456 MKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------RKMPLV 527 (842)
Q Consensus 456 kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------~~~~~V 527 (842)
.+.|...+...|.||. +.. .+ ..+. .+-..|+|| ..|++|+|+.++++.+++. ....++
T Consensus 143 ~~~gi~~~P~~~~t~~-~~~-~~---~~~~--~g~PvVvK~------~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~ 209 (344)
T 2p0a_A 143 HSLGPEKFPLVEQTFF-PNH-KP---MVTA--PHFPVVVKL------GHAHAGMGKIKVENQLDFQDITSVVAMAKTYAT 209 (344)
T ss_dssp HHHCTTTSCBCCCEEE-SSS-TT---CCCC--SSSSEEEEE------SSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEE
T ss_pred HHCCCCCCCCCCEEec-Cch-hh---hhhc--cCCCEEEEe------CCCCceeCeEEECCHHHHHHHHHHHhccCCeEE
Confidence 3446544555666764 321 11 2221 234799999 9999999999998865442 134567
Q ss_pred eeecccCcccCCCCeeEEEEEEE
Q psy16955 528 VQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 528 VQkYIenPLLIdGrKFDLRvYVL 550 (842)
+|+||. .++|||++|+
T Consensus 210 vQefI~-------~g~DiRv~VV 225 (344)
T 2p0a_A 210 TEAFID-------SKYDIRIQKI 225 (344)
T ss_dssp EEECCC-------EEEEEEEEEE
T ss_pred EEeccC-------CCccEEEEEE
Confidence 999996 3599999997
No 16
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.35 E-value=4.5e-06 Score=91.62 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCCh
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSP 699 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~Sp 699 (842)
+.+.++|.+++.+++.+. +|-.+.++||++|++++|||||||..|.+...+-
T Consensus 297 ~~~~~~i~~~a~~~~~aL----------------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~ 348 (383)
T 3k3p_A 297 PVIVEKMRDYAATAFRTL----------------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSM 348 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CH
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccH
Confidence 345566777776655542 3457899999999999999999999999987653
No 17
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.29 E-value=3.6e-06 Score=85.33 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=55.8
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCc--hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP--GDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKW 517 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP--~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l 517 (842)
...+|..+.+.+++ .|-. +|+|+.+. .+..++.+.+ +..+|+|| ..++.|+||.++++.
T Consensus 85 ~~~dK~~~~~~l~~----~gi~----~p~~~~~~~~~~~~~~~~~~-----~~p~vvKp------~~g~~~~gv~~v~~~ 145 (280)
T 1uc8_A 85 ACGDKWATSVALAK----AGLP----QPKTALATDREEALRLMEAF-----GYPVVLKP------VIGSWGRLLAXXXXX 145 (280)
T ss_dssp HHHBHHHHHHHHHH----TTCC----CCCEEEESSHHHHHHHHHHH-----CSSEEEEC------SBCCBCSHHHHHHHH
T ss_pred HhCCHHHHHHHHHH----cCcC----CCCeEeeCCHHHHHHHHHHh-----CCCEEEEE------CCCCCcccceecccc
Confidence 35567766655543 4522 58887664 2333333322 23699999 899999999988765
Q ss_pred cccC---------C---CCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 518 NQIP---------R---KMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 518 ~qI~---------~---~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
+++. . ..+++||+||+ |..+++|++++
T Consensus 146 ~el~~~~~~~~~~~~~~~~~~lvqe~i~------~~~~e~~v~v~ 184 (280)
T 1uc8_A 146 XXXXXXXXXKEVLGGFQHQLFYIQEYVE------KPGRDIRVFVV 184 (280)
T ss_dssp HC------------CTTTTCEEEEECCC------CSSCCEEEEEE
T ss_pred cccchhhhhHhhhcccCCCcEEEEeccC------CCCceEEEEEE
Confidence 4432 1 46799999997 45688998875
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.26 E-value=7.6e-06 Score=86.85 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 634 LQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 634 Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
+.++|++++.+++.+. +|..+.++||++| +++|||||||..|++...+
T Consensus 249 ~~~~i~~~a~~~~~al----------------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 249 TQETVQELALKAYKVL----------------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp HHHHHHHHHHHHHHHH----------------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSC
T ss_pred HHHHHHHHHHHHHHHh----------------CCceEEEEEEEEE-CCcEEEEEEECCCCCCccc
Confidence 3456666666655442 2447889999999 9999999999999998665
No 19
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.24 E-value=2.2e-05 Score=85.26 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
+.+.++|++++.+++.+. +|..+.++||++|.+++|||||||..|++...+
T Consensus 277 ~~~~~~i~~~a~~~~~al----------------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 277 PEVTKEVKQMALDAYKVL----------------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 344566777776665542 344789999999999999999999999987654
No 20
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.18 E-value=2.9e-06 Score=88.56 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=27.1
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
.+...+++||++|++++|||||||..|...
T Consensus 262 ~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 262 GLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred cccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 466899999999999999999999999874
No 21
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.15 E-value=2e-05 Score=85.95 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCC
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSS 698 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~S 698 (842)
+.+.++|++++.+++.+. +|..+.++||++|+++. ||+|||..|.+...+
T Consensus 292 ~~~~~~i~~~a~~~~~aL----------------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 292 DQVAEAIRQLAIRAFAAI----------------DCRGLARVDFFLTDDGP-VINEINTMPGFTTIS 341 (373)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTS
T ss_pred HHHHHHHHHHHHHHHHHh----------------CCccEEEEEEEEECCCC-EEEEecCCCCCCccc
Confidence 455677777776666542 34578999999999999 999999999998765
No 22
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.15 E-value=1.2e-05 Score=83.53 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=48.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeeeccccCch--hHHH-HHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 442 GRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPG--DDKR-LRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 442 trKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~--d~~~-f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
.+|..+.+.+ ++.|.. +|+|+.+.. +... +...+ +-.+|+|| ..++.|+||.++++.+
T Consensus 96 ~dK~~~~~~l----~~~Gip----~p~~~~~~~~~~~~~~~~~~~-----~~P~vvKP------~~~~~s~Gv~~v~~~~ 156 (307)
T 3r5x_A 96 MDKNISKKIL----RYEGIE----TPDWIELTKMEDLNFDELDKL-----GFPLVVKP------NSGGSSVGVKIVYDKD 156 (307)
T ss_dssp HCHHHHHHHH----HHTTCC----CCCEEEEESSSCCCHHHHHHH-----CSSEEEEE------CC----CCCEEECSHH
T ss_pred cCHHHHHHHH----HHCCCC----CCCEEEEeChhhhhHHHHHhc-----CCCEEEEe------CCCCCCCCEEEeCCHH
Confidence 3555554443 344532 566666542 2221 33333 23699999 9999999999998866
Q ss_pred ccC--------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 519 QIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 519 qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
++. ...+++||+||+ |+ ++++.|
T Consensus 157 el~~~~~~~~~~~~~~lvee~i~------G~--e~~v~v 187 (307)
T 3r5x_A 157 ELISMLETVFEWDSEVVIEKYIK------GE--EITCSI 187 (307)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCcC------CE--EEEEEE
Confidence 543 146899999997 63 677766
No 23
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.14 E-value=3.1e-05 Score=83.27 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=91.0
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC-CCccEEEEcccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA-RGIGIKVVHKWN 518 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs-RGrGI~vi~~l~ 518 (842)
...+|..+.+.++ +.|-. .|+++.+... +++.+.+ +-.+|+|| ..++ .|+|+.++++.+
T Consensus 97 ~~~dK~~~~~~l~----~~gip----~p~~~~~~~~-~~~~~~~-----~~P~vvKp------~~~~y~g~Gv~~v~~~~ 156 (380)
T 3ax6_A 97 IIQDKFVQKEFLK----KNGIP----VPEYKLVKDL-ESDVREF-----GFPVVQKA------RKGGYDGRGVFIIKNEK 156 (380)
T ss_dssp HHHSHHHHHHHHH----HTTCC----CCCEEECSSH-HHHHHTT-----CSSEEEEE------SCCC-----EEEECSGG
T ss_pred HhcCHHHHHHHHH----HcCCC----CCCeEEeCCH-HHHHHhc-----CCCEEEEe------cCCCCCCCCeEEECCHH
Confidence 3556776655443 44532 4666655432 2232221 24699999 8888 999999999877
Q ss_pred ccCCC--CcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcceeecccccccC
Q psy16955 519 QIPRK--MPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKM 596 (842)
Q Consensus 519 qI~~~--~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~HLTNySINK~ 596 (842)
++... ..+|||+||+. | .++++.++...-.-..++- ..+.+-.... ..+ .++
T Consensus 157 el~~~~~~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~--------~~~~~~~~~~-----~~~--~~~---- 210 (380)
T 3ax6_A 157 DLENAIKGETYLEEFVEI-----E--KELAVMVARNEKGEIACYP--------VVEMYFDEDA-----NIC--DTV---- 210 (380)
T ss_dssp GGGGCCCSSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEE--------EEEEC---------------CEE----
T ss_pred HHHHHhcCCEEEEeccCC-----C--eeEEEEEEECCCCCEEEEC--------CeeeeecccC-----Cee--EEE----
Confidence 76432 78999999972 2 4777766653111111110 0111100000 000 000
Q ss_pred CCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEE
Q psy16955 597 SSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDIL 676 (842)
Q Consensus 597 s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfL 676 (842)
+. .. .+ .+.+.++|++++.+++.+. ++...+++||+
T Consensus 211 ---~~--------p~----------------~l-~~~~~~~~~~~a~~~~~~l----------------g~~G~~~vd~~ 246 (380)
T 3ax6_A 211 ---IA--------PA----------------RI-EEKYSKIAREIATSVVEAL----------------EGVGIFGIEMF 246 (380)
T ss_dssp ---EE--------SC----------------SS-CHHHHHHHHHHHHHHHHHH----------------TCCEEEEEEEE
T ss_pred ---EC--------CC----------------CC-CHHHHHHHHHHHHHHHHHC----------------CCeEEEEEEEE
Confidence 00 00 01 1334556666666555542 23478999999
Q ss_pred ecCCCceEEEEeecCCCCCC
Q psy16955 677 LDSKLKPWLLEVNISPSLHS 696 (842)
Q Consensus 677 LDedLKPWLLEVN~sPSL~s 696 (842)
+|++++||+||||..|+...
T Consensus 247 ~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 247 LTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp EETTSCEEEEEEESSCCGGG
T ss_pred EeCCCcEEEEEecCCCCCCc
Confidence 99999999999999998754
No 24
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.08 E-value=6.9e-05 Score=81.19 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCc--hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCC-CccEEEEccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP--GDDKRLRASWERNCGNIKWIVKPIHFWFQPASAR-GIGIKVVHKW 517 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP--~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsR-GrGI~vi~~l 517 (842)
..+|..+.+.+. +.|.. .|.++.+. ++..++.+.+ +-.+|+|| ..+.. |+|+.++++.
T Consensus 110 ~~dK~~~k~~l~----~~Gip----~p~~~~~~~~~~~~~~~~~~-----g~P~vvKp------~~~~~~g~Gv~~v~~~ 170 (389)
T 3q2o_A 110 TQNRFTEKNAIE----KAGLP----VATYRLVQNQEQLTEAIAEL-----SYPSVLKT------TTGGYDGKGQVVLRSE 170 (389)
T ss_dssp TTSHHHHHHHHH----HTTCC----CCCEEEESSHHHHHHHHHHH-----CSSEEEEE------SSCCSSSCCEEEESSG
T ss_pred hcCHHHHHHHHH----HCCCC----CCCeEEECCHHHHHHHHHhc-----CCCEEEEe------CCCCCCCCCeEEECCH
Confidence 446666655443 44532 45555443 3333333333 24699999 77754 8999999987
Q ss_pred cccCC------CCcceeeeccc
Q psy16955 518 NQIPR------KMPLVVQKYLD 533 (842)
Q Consensus 518 ~qI~~------~~~~VVQkYIe 533 (842)
+++.. ..++|||+||+
T Consensus 171 ~el~~~~~~~~~~~~lvEe~i~ 192 (389)
T 3q2o_A 171 ADVDEARKLANAAECILEKWVP 192 (389)
T ss_dssp GGHHHHHHHHHHSCEEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEeccc
Confidence 77532 46899999997
No 25
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.05 E-value=0.00015 Score=79.59 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHH
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDL 712 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~ 712 (842)
.+.+++.+++.+++.+. ++..++++||++|.++++|++|||..|..+..--.+ ..-..++...
T Consensus 249 ~~~~~~~~~a~~i~~~L----------------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~-~~~~s~~~~~ 311 (403)
T 3k5i_A 249 AINQKAQELARKAVAAF----------------DGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIE-GCALSQFDAH 311 (403)
T ss_dssp HHHHHHHHHHHHHHHTS----------------CCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHH-HBSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHc----------------CCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeee-ecCCCHHHHH
Confidence 34456666665554431 345799999999999999999999999874222121 1123444444
Q ss_pred HHH-cCccCCC
Q psy16955 713 FNI-VGFHLPE 722 (842)
Q Consensus 713 L~L-~gi~~p~ 722 (842)
++. +|.++++
T Consensus 312 ~ra~~G~pl~~ 322 (403)
T 3k5i_A 312 LRAILDLPIPA 322 (403)
T ss_dssp HHHHTTCCCCG
T ss_pred HHHHcCCCCCc
Confidence 543 6776654
No 26
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.97 E-value=8.4e-05 Score=79.33 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC-CCccEEEEccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA-RGIGIKVVHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs-RGrGI~vi~~l~q 519 (842)
..+|..+.+.+ +++|-. .|.++.+. .+++.+..++ -+-.+|+|| ..++ .|+|+.++++.++
T Consensus 90 ~~dK~~~~~~l----~~~gip----~p~~~~~~--~~~~~~~~~~--~~~P~vvKp------~~~~~~g~Gv~~v~~~~e 151 (365)
T 2z04_A 90 KKSRIREKLFL----KKHGFP----VPEFLVIK--RDEIIDALKS--FKLPVVIKA------EKLGYDGKGQYRIKKLED 151 (365)
T ss_dssp HTCHHHHHHHH----HTTTCC----CCCEEEC------------------CEEEEC------C-----------------
T ss_pred hhCHHHHHHHH----HHcCCC----CCCEEEEc--HHHHHHHHHh--cCCCEEEEE------cCCCcCCCCeEEECCHHH
Confidence 45666665444 344532 56665543 2233332222 123699999 8888 9999999988665
Q ss_pred cC-------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 520 IP-------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 520 I~-------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
+. ....++||+||+. |+ ++++.++.
T Consensus 152 l~~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~ 183 (365)
T 2z04_A 152 ANQVVKNHDKEESFIIEEFVKF-----EA--EISCIGVR 183 (365)
T ss_dssp -------------CEEEECCCC-----SE--EEEEEEEE
T ss_pred HHHHHHHhccCCCEEEEccCCC-----CE--EEEEEEEE
Confidence 53 2467999999972 43 66666655
No 27
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.94 E-value=4.2e-05 Score=83.31 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHH
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQD 711 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D 711 (842)
+.+.++|++++.+++.+. +|..+.++||++| +++|||||||..|++...+-+- =...|+..
T Consensus 282 ~~~~~~i~~~a~~~~~aL----------------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p--~~~~l~~~ 342 (367)
T 2pvp_A 282 NALEEQLKENFKKLYSDL----------------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD--DFKTTLEN 342 (367)
T ss_dssp HHHHHHHHHHHHHHHTTT----------------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--CHHHHHHH
Confidence 344566776666554442 3457899999999 8999999999999985433211 35677777
Q ss_pred HHHHcCc
Q psy16955 712 LFNIVGF 718 (842)
Q Consensus 712 ~L~L~gi 718 (842)
++....+
T Consensus 343 li~~~~~ 349 (367)
T 2pvp_A 343 LAQSLPK 349 (367)
T ss_dssp HHHHCC-
T ss_pred HHhCccc
Confidence 7776443
No 28
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.90 E-value=0.00021 Score=78.81 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeecccc-CchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYV-LPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tfi-LP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
+.+|..+.+.+. +.|-. +|.++. .-.+.+++.+..++- +-.+|+|| ..++.|+|+.++++.++
T Consensus 117 ~~dK~~~~~~l~----~~Gip----~p~~~~~~~~~~~e~~~~~~~~--g~PvvvKp------~~g~gg~Gv~~v~~~~e 180 (446)
T 3ouz_A 117 MSDKSKAKQVMQ----RAGVP----VIPGSDGALAGAEAAKKLAKEI--GYPVILKA------AAGGGGRGMRVVENEKD 180 (446)
T ss_dssp HHSHHHHHHHHH----HTTCC----BCSBCSSSCCSHHHHHHHHHHH--CSSEEEEE------TTCCTTCSEEEECSGGG
T ss_pred hCCHHHHHHHHH----HcCCC----cCCCcccCCCCHHHHHHHHHHh--CCCEEEEE------CCCCCCCCEEEECCHHH
Confidence 456666554443 34532 455541 223333343333322 24699999 99999999999998776
Q ss_pred cCC--------------CCcceeeecccCcccCCCCeeEEEEEEEEe
Q psy16955 520 IPR--------------KMPLVVQKYLDDPYLINDTKFDLRLYVLVT 552 (842)
Q Consensus 520 I~~--------------~~~~VVQkYIenPLLIdGrKFDLRvYVLVT 552 (842)
+.. ...++||+||+.| + ++.+.++..
T Consensus 181 l~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~d 220 (446)
T 3ouz_A 181 LEKAYWSAESEAMTAFGDGTMYMEKYIQNP-----R--HIEVQVIGD 220 (446)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-----c--EEEEEEEEc
Confidence 531 5689999999732 2 566655543
No 29
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.86 E-value=8.7e-05 Score=81.12 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.8
Q ss_pred eeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
+..+.+||++|.+++|||||||..|+-.
T Consensus 267 ~G~~~ve~~~~~dG~~~~iEiN~R~gG~ 294 (425)
T 3vot_A 267 QGPAHTELRLDKDGTPYVIEVGARIGGS 294 (425)
T ss_dssp SEEEEEEEEECTTCCEEEEEEESSCGGG
T ss_pred cceEEEEEEEEeCCcEEEEEEecCCCCC
Confidence 3688999999999999999999999653
No 30
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=97.85 E-value=0.0002 Score=77.69 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=36.8
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHH-cCccCCC
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNI-VGFHLPE 722 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L-~gi~~p~ 722 (842)
++..++++||++|.++++|++|||..|.-+..-.++. .-..++...++. +|+++++
T Consensus 249 g~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~-~~~s~f~~~~ra~~G~pl~~ 305 (377)
T 3orq_A 249 HFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEA-CDYSQFDTHILAVTGQSLPN 305 (377)
T ss_dssp CCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHH-BSSCHHHHHHHHHTTCCCCS
T ss_pred CCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehh-cCCCHHHHHHHHHcCCCCCc
Confidence 3457999999999999999999999998432222221 122333444443 7777665
No 31
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.84 E-value=0.00028 Score=77.69 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccc--cC--chhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTY--VL--PGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHK 516 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tf--iL--P~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~ 516 (842)
..+|..+.+.+. +.|-. .|.++ .+ +.+..++.+.+ +-.+|+|| ..++.|+|+.++++
T Consensus 112 ~~dK~~~k~~l~----~~gip----~p~~~~~~~~~~~~~~~~~~~~-----g~PvvvKp------~~g~gg~Gv~~v~~ 172 (451)
T 1ulz_A 112 MGDKARSKEVMK----KAGVP----VVPGSDGVLKSLEEAKALAREI-----GYPVLLKA------TAGGGGRGIRICRN 172 (451)
T ss_dssp HHSHHHHHHHHH----HTTCC----BCCBCSSSCCCHHHHHHHHHHH-----CSSEEEEE------CSSSSCCSCEEESS
T ss_pred hcCHHHHHHHHH----HcCCC----CCCCcccccCCHHHHHHHHHHc-----CCCEEEEE------CCCCCCccEEEeCC
Confidence 556766655443 44522 45554 33 23333333332 23699999 99999999999987
Q ss_pred ccccC--------------CCCcceeeecccCcccCCCCeeEEEEEEEEe
Q psy16955 517 WNQIP--------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVT 552 (842)
Q Consensus 517 l~qI~--------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVT 552 (842)
.+++. ....+|||+||+.+ -++++.++..
T Consensus 173 ~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 215 (451)
T 1ulz_A 173 EEELVKNYEQASREAEKAFGRGDLLLEKFIENP-------KHIEYQVLGD 215 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-------EEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-------eEEEEEEEEc
Confidence 65442 14679999999732 2666666553
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.80 E-value=0.00032 Score=77.60 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=35.4
Q ss_pred ceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHH-HcCccCCC
Q psy16955 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFN-IVGFHLPE 722 (842)
Q Consensus 667 cFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~-L~gi~~p~ 722 (842)
+..++++||++|.++++|++|||..|.-...-..+ ..-..++...++ ++|.++++
T Consensus 279 ~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~~t~~-~~~~s~~~~~~ra~~G~pl~~ 334 (419)
T 4e4t_A 279 YVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVD-ACATSQFEQQVRAMTRMPLGN 334 (419)
T ss_dssp CCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHH-HBSSCHHHHHHHHHTTCCCCC
T ss_pred CeeEEEEEEEEeCCCCEEEEEEeCCCCCCCCeEee-ccCCCHHHHHHHHHcCCCCCC
Confidence 34799999999999999999999999864322111 111233333333 36766654
No 33
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=97.78 E-value=0.00036 Score=76.79 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=36.9
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceeeecccCcccCCCCeeEEEEEEEEe
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLVT 552 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLVT 552 (842)
-.+|+|| ..++.|+|+.++++.+++. ....+|||+||+.+ -++++-++..
T Consensus 152 ~PvvvKp------~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 215 (451)
T 2vpq_A 152 YPVIIKA------TAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGD 215 (451)
T ss_dssp SSEEEEE------TTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEEC
T ss_pred CcEEEEE------CCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEc
Confidence 3699999 9999999999998765432 13679999999732 2566655543
No 34
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.74 E-value=0.0003 Score=75.99 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+. +.|-. .|.++.+. +.+++.+..++- +-.+|+|| ..++.|+|++++++.+++
T Consensus 107 ~~dK~~~~~~l~----~~gip----~p~~~~~~-~~~~~~~~~~~~--g~P~vvKp------~~g~gg~Gv~~v~~~~el 169 (403)
T 4dim_A 107 CGDKYKMKEAFK----KYNVN----TARHFVVR-NENELKNALENL--KLPVIVKA------TDLQGSKGIYIAKKEEEA 169 (403)
T ss_dssp HHCHHHHHHHHH----HHTCC----CCCEECCC-SHHHHHHHHHTS--CSSEEEEC------SCC-----CEEESSHHHH
T ss_pred HhCHHHHHHHHH----HcCCC----CCCEEEeC-CHHHHHHHHhcC--CCCEEEEE------CCCCCCCCEEEECCHHHH
Confidence 456666554443 34532 56666553 333343333322 34699999 999999999999886654
Q ss_pred C----------CCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 521 P----------RKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 521 ~----------~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
. ....++||+||+ |.-|++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 170 IDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp HHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred HHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 2 246799999997 6677776653
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.73 E-value=0.00043 Score=74.32 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=33.9
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC------------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
-.+|+|| ..++.|+|+.++++.+++. ....+|||+||+. | .++++.++.
T Consensus 149 ~P~vvKp------~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g--~E~sv~~~~ 209 (391)
T 1kjq_A 149 YPCIVKP------VMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----D--FEITLLTVS 209 (391)
T ss_dssp SSEEEEE------SCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----S--EEEEEEEEE
T ss_pred CCEEEEe------CCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----C--eEEEEEEEE
Confidence 3699999 9999999999998866542 1467999999972 3 356665544
No 36
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.73 E-value=0.00024 Score=74.43 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+.+ .|-. .|.|+..+.+..++.. ...-+..+|+|| ..++.|+|++++++.+++
T Consensus 112 ~~dK~~~~~~l~~----~gip----~p~~~~~~~~~~~~~~---~~~~~~P~vvKp------~~g~g~~gv~~v~~~~el 174 (331)
T 2pn1_A 112 CFDKYTMYEYCLR----QGIA----HARTYATMASFEEALA---AGEVQLPVFVKP------RNGSASIEVRRVETVEEV 174 (331)
T ss_dssp HHBHHHHHHHHHH----HTCC----CCCEESSHHHHHHHHH---TTSSCSCEEEEE------SBC---------------
T ss_pred hhCHHHHHHHHHH----cCCC----CCcEEecHHHhhhhhh---cccCCCCEEEEe------CCCCCCCCeEEeCCHHHH
Confidence 4577777655543 4532 5777776555443332 111234799999 889999999999887665
Q ss_pred CC----CCcceeeeccc
Q psy16955 521 PR----KMPLVVQKYLD 533 (842)
Q Consensus 521 ~~----~~~~VVQkYIe 533 (842)
.. ..+++||+||+
T Consensus 175 ~~~~~~~~~~lvee~i~ 191 (331)
T 2pn1_A 175 EQLFSKNTDLIVQELLV 191 (331)
T ss_dssp --------CEEEEECCC
T ss_pred HHHHHhCCCeEEEecCC
Confidence 32 46899999997
No 37
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.72 E-value=4.1e-05 Score=78.77 Aligned_cols=71 Identities=28% Similarity=0.372 Sum_probs=48.3
Q ss_pred eeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEc-ccccc-------C--CCCcceeeecccC
Q psy16955 465 FTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVH-KWNQI-------P--RKMPLVVQKYLDD 534 (842)
Q Consensus 465 FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~-~l~qI-------~--~~~~~VVQkYIen 534 (842)
.+|+|+.+.. .+++.+..++.+ .+|+|| ..++.|+||.+++ +.+++ . ...++|||+||+.
T Consensus 134 ~~P~t~~~~~-~~~~~~~~~~~~---p~vvKP------~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~ 203 (316)
T 1gsa_A 134 LTPETLVTRN-KAQLKAFWEKHS---DIILKP------LDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPA 203 (316)
T ss_dssp TSCCEEEESC-HHHHHHHHHHHS---SEEEEC------SSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGG
T ss_pred cCCCeEEeCC-HHHHHHHHHHcC---CEEEEE------CCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCC
Confidence 5688877642 233333333222 699999 9999999999997 54432 1 1368999999973
Q ss_pred cccCCCCeeEEEEEEE
Q psy16955 535 PYLINDTKFDLRLYVL 550 (842)
Q Consensus 535 PLLIdGrKFDLRvYVL 550 (842)
+ ..+|+|++++
T Consensus 204 ~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 204 I-----KDGDKRVLVV 214 (316)
T ss_dssp G-----GGCEEEEEEE
T ss_pred C-----CCCCEEEEEE
Confidence 1 3689998774
No 38
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.70 E-value=0.0009 Score=71.62 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC-CCccEEEEccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA-RGIGIKVVHKWNQ 519 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs-RGrGI~vi~~l~q 519 (842)
..+|..+.+.++ ++|-. .|.++.+. +.+++.+..++ -+-.+|+|| ..++ .|+|+.++++.++
T Consensus 94 ~~dK~~~k~~l~----~~gip----~p~~~~~~-~~~~~~~~~~~--~g~P~vvKp------~~~~~~g~Gv~~v~~~~e 156 (369)
T 3aw8_A 94 AQDRLREKTFFQ----GLGVP----TPPFHPVD-GPEDLEEGLKR--VGLPALLKT------RRGGYDGKGQALVRTEEE 156 (369)
T ss_dssp HTCHHHHHHHHH----HHTCC----CCCEEEES-SHHHHHHHHTT--TCSSEEEEE------CCC------EEEECSHHH
T ss_pred hcCHHHHHHHHH----HCCCC----CCCceeeC-CHHHHHHHHHH--cCCCEEEEE------cCCCCCcceEEEECCHHH
Confidence 457776655443 44633 35555442 23334444332 234699999 8888 9999999987654
Q ss_pred cC------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 520 IP------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 520 I~------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
+. ....++||+||+. |+ ++.+.++.
T Consensus 157 l~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~ 187 (369)
T 3aw8_A 157 ALEALKALGGRGLILEGFVPF-----DR--EVSLLAVR 187 (369)
T ss_dssp HHHHHTTTCSSSEEEEECCCC-----SE--EEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEcCCC-----CE--EEEEEEEE
Confidence 42 1468999999962 54 45555544
No 39
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.67 E-value=0.00032 Score=78.06 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+ +++|.. .|+++.+. +.++..++.++. +-.+|+|| ..++.|+|+.++++.+++
T Consensus 121 ~~dK~~~k~~l----~~~GIp----~p~~~~~~-~~~ea~~~~~~~--g~PvVvKp------~~~~gg~GV~iv~~~eel 183 (442)
T 3lp8_A 121 ESSKGFTKELC----MRYGIP----TAKYGYFV-DTNSAYKFIDKH--KLPLVVKA------DGLAQGKGTVICHTHEEA 183 (442)
T ss_dssp HHCHHHHHHHH----HHHTCC----BCCEEEES-SHHHHHHHHHHS--CSSEEEEE------SSCCTTTSEEEESSHHHH
T ss_pred hhCHHHHHHHH----HHCCCC----CCCEEEEC-CHHHHHHHHHHc--CCcEEEeE------CCCCCCCeEEEeCCHHHH
Confidence 45666655444 345633 56665553 333343443332 34699999 999999999999875543
Q ss_pred C--------------CCCcceeeeccc
Q psy16955 521 P--------------RKMPLVVQKYLD 533 (842)
Q Consensus 521 ~--------------~~~~~VVQkYIe 533 (842)
. ....+|||+||+
T Consensus 184 ~~a~~~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 184 YNAVDAMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp HHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEEeec
Confidence 1 125799999996
No 40
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.67 E-value=0.00026 Score=74.99 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=31.5
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCCCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
+..||+|| ..++.|+||.++++ ...++|||+||+ |+ ++++.++.
T Consensus 133 ~~P~vvKP------~~g~gs~Gv~~v~~-----~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 133 DCKFIIKP------RTACAGEGIGFSDE-----VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSSEEEEE------SSCC----CBCCSS-----CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEe------CCCCCCCCEEEEec-----CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 35699999 99999999999887 457899999997 64 56666654
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.66 E-value=0.00076 Score=73.46 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=52.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+ ++.|-. .|.++.+. +.+++.+..++. +-.+|+|| ..++.|+|+.++++.+++
T Consensus 99 ~~dK~~~~~~l----~~~gip----~p~~~~~~-~~~~~~~~~~~~--~~P~vvKp------~~~~gg~Gv~~v~~~~el 161 (417)
T 2ip4_A 99 EGSKAFAKGLM----ERYGIP----TARYRVFR-EPLEALAYLEEV--GVPVVVKD------SGLAAGKGVTVAFDLHQA 161 (417)
T ss_dssp HHCHHHHHHHH----HHTCCC----BCCEEEES-SHHHHHHHHHHH--CSSEEEEC------TTSCSSTTCEEESCHHHH
T ss_pred HcCHHHHHHHH----HHcCCC----CCCeeeeC-CHHHHHHHHHHc--CCCEEEEE------CCCCCCCCEEEeCCHHHH
Confidence 44666655444 345532 45555442 223333333221 23699999 899999999999876543
Q ss_pred C-------C---CCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 521 P-------R---KMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 521 ~-------~---~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
. . ...+|||+||+ |. ++++.++.
T Consensus 162 ~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 162 KQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp HHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred HHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 2 1 26799999996 54 66666654
No 42
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.63 E-value=0.00034 Score=77.54 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=34.2
Q ss_pred eeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHc
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIV 716 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~ 716 (842)
..++.+||++|++++|++||||..|.......+...+...|++-++.++
T Consensus 270 ~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~ 318 (431)
T 3mjf_A 270 TGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGT 318 (431)
T ss_dssp EEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999999999733323233344445555555444
No 43
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.62 E-value=0.00079 Score=73.40 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
...+|..+.+.++ +.|-. .|.++.+. +.+++.+..++. +-.+|+|| ..++.|+|+.++++.++
T Consensus 99 ~~~dK~~~k~~l~----~~gip----~p~~~~~~-~~~~~~~~~~~~--~~PvvvKp------~~g~gg~Gv~~v~~~~e 161 (424)
T 2yw2_A 99 LEGSKAFAKTFMK----KYGIP----TARYEVFT-DFEKAKEYVEKV--GAPIVVKA------DGLAAGKGAVVCETVEK 161 (424)
T ss_dssp HHHCHHHHHHHHH----HTTCC----BCCEEEES-CHHHHHHHHHHH--CSSEEEEE------SSCCTTCSEEEESSHHH
T ss_pred HHhCHHHHHHHHH----HcCCC----CCCeEEEC-CHHHHHHHHHHc--CCcEEEEe------CCCCCCCCEEEECCHHH
Confidence 3557777665543 44532 46665542 222333333221 23699999 99999999999987654
Q ss_pred cC-------C-------CCcceeeeccc
Q psy16955 520 IP-------R-------KMPLVVQKYLD 533 (842)
Q Consensus 520 I~-------~-------~~~~VVQkYIe 533 (842)
+. . ...+|||+||+
T Consensus 162 l~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 162 AIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp HHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 32 1 25799999996
No 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.56 E-value=0.00052 Score=74.81 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=52.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+. ++|-. .|.++.+. +.+++.+..++. +-.+|+|| ..++.|+|+.++++.+++
T Consensus 100 ~~dK~~~k~~l~----~~gip----~p~~~~~~-~~~~~~~~~~~~--~~P~vvKp------~~~~~g~Gv~~v~~~~el 162 (422)
T 2xcl_A 100 EGSKQFAKDLMK----KYDIP----TAEYETFT-SFDEAKAYVQEK--GAPIVIKA------DGLAAGKGVTVAMTEEEA 162 (422)
T ss_dssp HHCHHHHHHHHH----HTTCC----BCCEEEES-CHHHHHHHHHHH--CSSEEEEE------SSCGGGTCEEEESSHHHH
T ss_pred hcCHHHHHHHHH----HcCCC----CCCeEEEC-CHHHHHHHHHhc--CCCEEEEe------CCCCCCCcEEEECCHHHH
Confidence 457777655443 45532 46655542 223333333221 23699999 899999999999875543
Q ss_pred C-------C-------CCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 521 P-------R-------KMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 521 ~-------~-------~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
. . ...+|||+||+ |+ ++.+.+++
T Consensus 163 ~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 163 IACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp HHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred HHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 2 1 36799999996 54 55555554
No 45
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.52 E-value=0.00074 Score=74.68 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCc--hhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLP--GDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP--~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
..+|..+.+.+ ++.|.. .|+++.+. .+..++.+.+ +-.+|+|| ..++.|+|+.++++.+
T Consensus 121 ~~dK~~~k~~l----~~~gip----~p~~~~~~~~~~~~~~~~~~-----~~PvVvKp------~~~~gg~Gv~~v~~~~ 181 (451)
T 2yrx_A 121 EGSKAFAKELM----KKYGIP----TADHAAFTSYEEAKAYIEQK-----GAPIVIKA------DGLAAGKGVTVAQTVE 181 (451)
T ss_dssp HHCHHHHHHHH----HHTTCC----BCCEEEESCHHHHHHHHHHH-----CSSEEEEE------CC----CCEEEESSHH
T ss_pred hhCHHHHHHHH----HHcCCC----CCCeEEECCHHHHHHHHHhc-----CCcEEEEe------CCCCCCCcEEEECCHH
Confidence 34666655444 345532 46655542 3343343332 23699999 8999999999998755
Q ss_pred ccC--------------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 519 QIP--------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 519 qI~--------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
++. ...++|||+||+ |. ++.+.+++
T Consensus 182 el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 220 (451)
T 2yrx_A 182 EALAAAKAALVDGQFGTAGSQVVIEEYLE------GE--EFSFMAFV 220 (451)
T ss_dssp HHHHHHHHHHHHSCCBTTBCCEEEEECCC------SE--EEEEEEEE
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 431 136799999996 55 45554443
No 46
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=97.51 E-value=0.0019 Score=71.08 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=52.6
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccc--cC--chhH-HHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEE
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTY--VL--PGDD-KRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVV 514 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tf--iL--P~d~-~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi 514 (842)
...+|..+.+.+. +.|-. .|.++ .+ +.+. .++.+.+ +-.+|+|| ..++.|+|+.++
T Consensus 112 ~~~dK~~~k~~l~----~~gip----~p~~~~~~~~~~~~~~~~~~~~~-----g~PvvvKp------~~g~gg~Gv~~v 172 (449)
T 2w70_A 112 LMGDKVSAIAAMK----KAGVP----CVPGSDGPLGDDMDKNRAIAKRI-----GYPVIIKA------SGGGGGRGMRVV 172 (449)
T ss_dssp HHHSHHHHHHHHH----HHTCC----BCSBCSSCCCSCHHHHHHHHHHH-----CSSEEEEE------TTCCTTTTCEEE
T ss_pred HhcCHHHHHHHHH----HcCCC----cCCCcccccCCHHHHHHHHHHHh-----CCcEEEEE------CCCCCCCCEEEe
Confidence 3556666655443 44532 34544 33 2344 4443333 23699999 999999999999
Q ss_pred ccccccC--------------CCCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 515 HKWNQIP--------------RKMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 515 ~~l~qI~--------------~~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
++.+++. ....++||+||+.+ + ++++-++.
T Consensus 173 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~~~~ 216 (449)
T 2w70_A 173 RGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP-----R--HVEIQVLA 216 (449)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC-----e--EEEEEEEE
Confidence 8765432 14679999999732 2 55665554
No 47
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.48 E-value=0.0021 Score=70.37 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHH
Q psy16955 632 AALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQD 711 (842)
Q Consensus 632 ~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D 711 (842)
+.+.++|++++.+++.+... ...++-.++++||++|.++ ||+||||..|+......+....-..+..-
T Consensus 242 ~~~~~~i~~~a~~~~~~l~~-----------~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~ 309 (412)
T 1vkz_A 242 SDTIKKIEELFDKTLWGVEK-----------EGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPETEVIVTLNPEGFVNA 309 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------TTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEEEECCC-cEEEEEecCCCCCcceeehhhcCCCHHHH
Confidence 34556676666666554311 0113447899999999998 99999999997553222333344555555
Q ss_pred HHHHcCccCC
Q psy16955 712 LFNIVGFHLP 721 (842)
Q Consensus 712 ~L~L~gi~~p 721 (842)
++.+++-.++
T Consensus 310 ~~~~~~g~l~ 319 (412)
T 1vkz_A 310 VLEGYRGGKM 319 (412)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHhcCCCc
Confidence 5555544443
No 48
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.43 E-value=0.0023 Score=69.99 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
.+.++|.+++.+++.+. ++...+++||++|++ +||+||||..|+-.
T Consensus 254 ~~~~~i~~~a~~~~~~l----------------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 254 KAEREVYRIAKRITDVL----------------GGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp HHHHHHHHHHHHHHHHH----------------CSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHc----------------CCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 34556666666555442 235789999999998 99999999998854
No 49
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.42 E-value=0.0046 Score=68.32 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccc--cCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTY--VLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKW 517 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tf--iLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l 517 (842)
...+|..+.+.+. +.|-. .|.++ .+ .+.+++.+..++. +-.+|+|| ..++.|+|+.++++.
T Consensus 117 ~~~dK~~~k~~l~----~~Gip----~p~~~~~~~-~~~~~~~~~~~~~--g~PvvvKp------~~g~gg~Gv~~v~~~ 179 (461)
T 2dzd_A 117 MFGDKVKARHAAV----NAGIP----VIPGSDGPV-DGLEDVVAFAEAH--GYPIIIKA------ALGGGGRGMRIVRSK 179 (461)
T ss_dssp HTTSHHHHHHHHH----HTTCC----BCCBCSSCC-SSHHHHHHHHHHH--CSCEEEEE------STTCSSSSEEEECCG
T ss_pred HhhCHHHHHHHHH----HcCCC----CCCCcccCc-CCHHHHHHHHHhc--CCcEEEEe------CCCCCCCCEEEeCCH
Confidence 3567777655443 44532 45554 22 2233333333221 24699999 999999999999887
Q ss_pred cccC--------------CCCcceeeeccc
Q psy16955 518 NQIP--------------RKMPLVVQKYLD 533 (842)
Q Consensus 518 ~qI~--------------~~~~~VVQkYIe 533 (842)
+++. ....++||+||+
T Consensus 180 ~el~~~~~~~~~~~~~~~~~~~~lvEe~i~ 209 (461)
T 2dzd_A 180 SEVKEAFERAKSEAKAAFGSDEVYVEKLIE 209 (461)
T ss_dssp GGHHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEECCC
Confidence 6542 136799999997
No 50
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=97.41 E-value=0.00017 Score=85.87 Aligned_cols=132 Identities=14% Similarity=0.220 Sum_probs=73.9
Q ss_pred chHHHHHHHHhcCCEEec--CCCCeE-EEEcccCCchhhhccCcCCeecccCCCC---c-ccchHHHHHHHHHHHHHcCC
Q psy16955 388 TPVVVRKTILNTGYRLVR--KSSEWC-GTWGKHMKSLSFRTLKESQKINHFPGTF---Q-IGRKDRLWKNLLKCMMKYGD 460 (842)
Q Consensus 388 ~~~lVr~~L~~~GF~~v~--~~~dW~-~~W~~~~k~~~~~~L~p~QkVNHFPgs~---~-LtrKd~L~rnL~rm~kk~g~ 460 (842)
....|.+++++.|...+- ....+. +.++.+..- .+. .. + -.++.. . .++|....+.|. ++|.
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~-~~~----g~-i-tg~~~~~a~~~~~DK~~tk~lL~----~~GI 497 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEY-VKN----GN-M-TSKDNYIVPLAMANKVVTKKILD----EKHF 497 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEE-EET----TT-B-CTTSCTHHHHHTTTSHHHHHHHH----HTTC
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEE-Eec----CC-e-eCCCHHHHHHHHhCHHHHHHHHH----HCCc
Confidence 457788999999998743 222222 223221110 000 00 0 122222 1 236776655544 4553
Q ss_pred CCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEc---cccccC--------CCCcceee
Q psy16955 461 KEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVH---KWNQIP--------RKMPLVVQ 529 (842)
Q Consensus 461 ~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~---~l~qI~--------~~~~~VVQ 529 (842)
. +|+++.+... ++..+..... -+..+|+|| ..++.|+||.+++ +.+++. ....+|||
T Consensus 498 P----vP~~~~~~~~-~ea~~~~~~~-~g~PvVVKP------~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVE 565 (750)
T 3ln6_A 498 P----TPFGDEFTDR-KEALNYFSQI-QDKPIVVKP------KSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVE 565 (750)
T ss_dssp C----CCCCCCEETT-TTHHHHHHHS-SSSCEEEEE------TTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEE
T ss_pred C----CCCEEEECCH-HHHHHHHHHh-cCCcEEEEe------CCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEE
Confidence 2 5666665421 1122222111 235799999 9999999999998 443332 24679999
Q ss_pred ecccCcccCCCCeeEEEEEEE
Q psy16955 530 KYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 530 kYIenPLLIdGrKFDLRvYVL 550 (842)
+||. | .|+|+.|+
T Consensus 566 efI~------G--~E~~v~Vv 578 (750)
T 3ln6_A 566 EYIE------G--TEYRFFVL 578 (750)
T ss_dssp ECCC------S--EEEEEEEE
T ss_pred eccC------C--CEEEEEEE
Confidence 9996 6 49998876
No 51
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.35 E-value=0.0023 Score=70.64 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=50.4
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcce-EEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIK-WIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~-WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
...+|..+.+.++ +.|-. .|.++.+. +.+++.+..++- +-. +|+|| ..++.|+|+.++++.+
T Consensus 125 ~~~dK~~~k~~l~----~~gip----~p~~~~~~-~~~~~~~~~~~~--g~P~vvvKp------~~~~gg~Gv~~v~~~~ 187 (452)
T 2qk4_A 125 LESSKRFAKEFMD----RHGIP----TAQWKAFT-KPEEACSFILSA--DFPALVVKA------SGLAAGKGVIVAKSKE 187 (452)
T ss_dssp HHHBHHHHHHHHH----HTTCC----BCCEEEES-SHHHHHHHHHHC--SSCEEEEEE------SBC---CCEEECSSHH
T ss_pred HhcCHHHHHHHHH----HCCCC----CCCeEEEC-CHHHHHHHHHhC--CCCeEEEEe------CCCCCCCCEEEeCCHH
Confidence 3467777665543 45532 45555442 233333333321 235 99999 8899999999998754
Q ss_pred ccC-------C-------CCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 519 QIP-------R-------KMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 519 qI~-------~-------~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
++. . ..++|||+||+ |+ ++.+.++.
T Consensus 188 el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 188 EACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp HHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 431 1 36799999996 54 66665554
No 52
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=97.32 E-value=0.0029 Score=72.28 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=31.3
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIe 533 (842)
-.+|+|| ..++.|+|+.++++.+++. ....+|||+||+
T Consensus 235 ~PvVvKp------~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~ 282 (554)
T 1w96_A 235 FPVMIKA------SEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG 282 (554)
T ss_dssp SSEEEEE------TTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred CCEEEEE------CCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 4699999 9999999999998765542 246899999997
No 53
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.28 E-value=0.016 Score=63.11 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHH
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDL 712 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~ 712 (842)
.+.+++++++.+++.+. ++..++++||+++++ ++|++|||..|.-+..-.++. .-..++...
T Consensus 201 ~~~~~~~~~a~~i~~aL----------------g~~G~~~vEf~~~~~-~~~v~EinpR~~~sg~~t~~~-~~~s~fe~~ 262 (355)
T 3eth_A 201 QQQARAEEMLSAIMQEL----------------GYVGVMAMECFVTPQ-GLLINELAPRVHNSGHWTQNG-ASISQFELH 262 (355)
T ss_dssp HHHHHHHHHHHHHHHHH----------------TCCEEEEEEEEEETT-EEEEEEEESSCCGGGTTHHHH-SSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHC----------------CCeeEEEEEEEEECC-cEEEEEeeCCCCCCccEEeee-ecCCHHHHH
Confidence 34566666665555432 345799999999974 899999999998643322221 112334444
Q ss_pred HH-HcCccCCCc
Q psy16955 713 FN-IVGFHLPEK 723 (842)
Q Consensus 713 L~-L~gi~~p~~ 723 (842)
++ ++|.++++.
T Consensus 263 ~ra~~G~pl~~~ 274 (355)
T 3eth_A 263 LRAITDLPLPQP 274 (355)
T ss_dssp HHHHTTCCCCCC
T ss_pred HHHHcCCCCCCc
Confidence 44 467776653
No 54
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=97.27 E-value=0.0051 Score=70.62 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=28.2
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIe 533 (842)
-.+|+|| ..++.|+||.++++.+++. ....++||+||+
T Consensus 229 yPvVVKp------~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~ 276 (540)
T 3glk_A 229 FPLMIKA------SEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ 276 (540)
T ss_dssp SSEEEEE------TTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS
T ss_pred CcEEEEE------CCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 4699999 9999999999999877653 146799999997
No 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.25 E-value=0.0036 Score=70.46 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=51.1
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQ 519 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~q 519 (842)
...+|..+.+.+. +.|-. +|+++.+. +.+++.+..++- +-.+|+|| ..++.|+|+.++++.++
T Consensus 136 ~~~DK~~~k~~l~----~~GIp----vp~~~~v~-s~ee~~~~~~~l--g~PvVVKP------~~g~gg~Gv~iv~~~ee 198 (474)
T 3vmm_A 136 NARDKNKMRDAFN----KAGVK----SIKNKRVT-TLEDFRAALEEI--GTPLILKP------TYLASSIGVTLITDTET 198 (474)
T ss_dssp HTTCHHHHHHHHH----HTTSC----CCCEEEEC-SHHHHHHHHHHS--CSSEEEEE------SSCCTTTTCEEECCTTS
T ss_pred HhhCHHHHHHHHH----HcCCC----CCCeEEEC-CHHHHHHHHHHc--CCCEEEEE------CCCCcCceEEEECCHHH
Confidence 3667777765554 44532 45555543 233343333332 34699999 99999999999988665
Q ss_pred cC--------------------CCCcceeeecccCc
Q psy16955 520 IP--------------------RKMPLVVQKYLDDP 535 (842)
Q Consensus 520 I~--------------------~~~~~VVQkYIenP 535 (842)
+. ....++||+||+.+
T Consensus 199 l~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 199 AEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 41 13679999999854
No 56
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=97.22 E-value=0.0073 Score=70.16 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=32.6
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeecccC
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLDD 534 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIen 534 (842)
-.+|+|| ..++.|+||.++++.+++. ....++||+||+.
T Consensus 245 yPvVVKp------~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g 293 (587)
T 3jrx_A 245 FPLMIKA------SEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH 293 (587)
T ss_dssp SSEEEEE------TTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS
T ss_pred CeEEEEe------CCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 4699999 9999999999999877653 1468999999973
No 57
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.08 E-value=0.0012 Score=77.67 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=13.5
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeeeccc-cCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 440 QIGRKDRLWKNLLKCMMKYGDKEFGFTPRTY-VLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 440 ~LtrKd~L~rnL~rm~kk~g~~~~~FlP~Tf-iLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
.+++|....+.+. +.|-. +|.+| ....+.+++.+..++ -+-.+|+|| ..++.|+|+.++++..
T Consensus 112 ~~~dK~~~k~~l~----~~GVP----vpp~~~~~~~s~~e~~~~a~~--igyPvVvKp------~~ggggkGv~iv~~~~ 175 (681)
T 3n6r_A 112 AMGDKITSKKIAQ----EANVS----TVPGYMGLIEDADEAVKISNQ--IGYPVMIKA------SAGGGGKGMRIAWNDQ 175 (681)
T ss_dssp HTTSHHHHHHHHH----TTTCC----CCCC--------------------------------------------------
T ss_pred HhCCHHHHHHHHH----HcCcC----cCCccccCcCCHHHHHHHHHh--cCCcEEEEE------CCCCCCCCEEEECCHH
Confidence 3567777654443 34522 34443 232333444333322 134689999 9999999999998876
Q ss_pred ccCC--------------CCcceeeecccCc
Q psy16955 519 QIPR--------------KMPLVVQKYLDDP 535 (842)
Q Consensus 519 qI~~--------------~~~~VVQkYIenP 535 (842)
++.. ...++||+||+.|
T Consensus 176 el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~ 206 (681)
T 3n6r_A 176 EAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206 (681)
T ss_dssp ---------------------------CCSC
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Confidence 6531 3479999999843
No 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.04 E-value=0.0012 Score=77.62 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEecCCCceEEEEeecCCCC
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSL 694 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLDedLKPWLLEVN~sPSL 694 (842)
.+.++|.+++.+.+.+. +....+++||++|.++++|+||||..|+-
T Consensus 276 ~~~~~l~~~a~~~~~al----------------g~~G~~~vEf~~~~dG~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 276 ELRRAMGEAAVRAAQAI----------------GYVGAGTVEFLLDERGQFFFMEMNTRLQV 321 (675)
T ss_dssp HHHHHHHHHHHHHHHHT----------------TCCSEEEEECCBCTTSCBCBCEEESSCCT
T ss_pred HHHHHHHHHHHHHHHHc----------------CCccceEEEEEEcCCCCEEEEeccccccC
Confidence 34566666666654442 22368899999999999999999999875
No 59
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.00 E-value=0.0018 Score=77.40 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEE----cc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVV----HK 516 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi----~~ 516 (842)
.++|....+.|. +.|.. +|.++.+. +.++....+.+ .-+..+|+|| ..++.|+||.++ .+
T Consensus 487 ~~DK~~tk~lL~----~~GIP----vP~~~~~~-~~~ea~~~~~~-~~g~PvVVKP------~~g~~G~GV~iv~~~v~~ 550 (757)
T 3ln7_A 487 MENKVVTKKVLQ----KAGFN----VPQSVEFT-SLEKAVASYAL-FENRAVVIKP------KSTNYGLGITIFQQGVQN 550 (757)
T ss_dssp HHHSHHHHHHHH----HHTCC----CCCEEEES-CHHHHHHGGGG-SSSSCEEEEE------SSCSTTTTCEECSSCCCC
T ss_pred hcCHHHHHHHHH----HCCcC----CCCEEEEC-CHHHHHHHHHH-hcCCCEEEEe------CCCCCCCCeEEecCCCCC
Confidence 346666554443 45633 46665553 33344444421 1234799999 999999999998 45
Q ss_pred ccccC--------CCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955 517 WNQIP--------RKMPLVVQKYLDDPYLINDTKFDLRLYVL 550 (842)
Q Consensus 517 l~qI~--------~~~~~VVQkYIenPLLIdGrKFDLRvYVL 550 (842)
.+++. ....+|||+||. | .|+|+.|+
T Consensus 551 ~eel~~al~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 551 REDFAKALEIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 44432 246799999994 6 49998775
No 60
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=96.89 E-value=0.015 Score=62.95 Aligned_cols=109 Identities=18% Similarity=0.346 Sum_probs=68.8
Q ss_pred hhhccCcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHH-----HHHH---HhhhcCC--cce
Q psy16955 422 SFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDK-----RLRA---SWERNCG--NIK 491 (842)
Q Consensus 422 ~~~~L~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~-----~f~~---~~~k~~~--~~~ 491 (842)
.|-.|+.--.||.+.--..+..|...++.|.+ .|. =+|+|.++-.+.. .|.+ +++-++. ...
T Consensus 76 ~y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~----~gI----PtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kP 147 (330)
T 3t7a_A 76 AYAKLRNPFVINDLNMQYLIQDRREVYSILQA----EGI----LLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKP 147 (330)
T ss_dssp HHHHHHCCEESBCSTHHHHHTBHHHHHHHHHH----TTC----CCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESS
T ss_pred HHHHHhCCceeCCHHHHHHHHHHHHHHHHHHH----cCC----CCCCEEEEeCCCCCccccceeccchhhhhccccccCC
Confidence 45555555578988877788888888877765 342 2677877654321 1111 1111111 256
Q ss_pred EEEcCCCccCCCCCC-----------CCccE-EEEcccc----------ccCCCCcceeeecccCcccCCCCeeEEEEEE
Q psy16955 492 WIVKPIHFWFQPASA-----------RGIGI-KVVHKWN----------QIPRKMPLVVQKYLDDPYLINDTKFDLRLYV 549 (842)
Q Consensus 492 WIvKP~~~~~~~~gs-----------RGrGI-~vi~~l~----------qI~~~~~~VVQkYIenPLLIdGrKFDLRvYV 549 (842)
+|.|| ..|+ +|.|- .++++.. .+.....+|+|+||.. +| -|||+||
T Consensus 148 fVeKP------v~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~v 215 (330)
T 3t7a_A 148 FVEKP------VSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYT 215 (330)
T ss_dssp EEEEE------SBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEE
T ss_pred eeEcc------cccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEE
Confidence 89999 6664 77787 5554322 2345678999999984 56 6999999
Q ss_pred E
Q psy16955 550 L 550 (842)
Q Consensus 550 L 550 (842)
+
T Consensus 216 V 216 (330)
T 3t7a_A 216 V 216 (330)
T ss_dssp E
T ss_pred E
Confidence 6
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.59 E-value=0.045 Score=67.50 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC----------CCCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP----------RKMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~----------~~~~~VVQkYIe 533 (842)
-.+|+|| ..+..|+|+.++.+.+++. ...+++||+||+
T Consensus 710 ~PvvVKP------~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 710 YPLVVRA------SYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp SSEEEEC-------------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred CCEEEEE------CCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 3699999 8899999999998755432 246799999997
No 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=96.46 E-value=0.014 Score=72.69 Aligned_cols=40 Identities=18% Similarity=0.559 Sum_probs=25.0
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccCC--------------CCcceeeecccCc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR--------------KMPLVVQKYLDDP 535 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~--------------~~~~VVQkYIenP 535 (842)
-.+|+|| ..++.|+|++++++.+++.. ...++||+||+.|
T Consensus 156 yPvVVKP------~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 156 FPLMIKA------TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp SSEEEEC------CC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred CCEEEEe------CCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 4699999 99999999999998776531 3579999999843
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.23 E-value=0.02 Score=70.56 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccccc
Q psy16955 441 IGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI 520 (842)
Q Consensus 441 LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI 520 (842)
..+|..+.+.+ ++.|.. +|+++.+. +.++..+..++- +-.+|+|| ..+..|+|+.++++.+++
T Consensus 126 ~~DK~~~k~~l----~~~Gip----vp~~~~v~-~~~ea~~~~~~i--g~PvVvKp------~~~~Gg~Gv~iv~~~eel 188 (1073)
T 1a9x_A 126 AEDRRRFDVAM----KKIGLE----TARSGIAH-TMEEALAVAADV--GFPCIIRP------SFTMGGSGGGIAYNREEF 188 (1073)
T ss_dssp HHSHHHHHHHH----HHTTCC----CCSEEEES-SHHHHHHHHHHH--CSSEEEEE------TTCCTTTTCEEESSHHHH
T ss_pred hhCHHHHHHHH----HHCCcC----CCCEEEEC-CHHHHHHHHHHc--CCCEEEEE------CCCCCCCceEEeCCHHHH
Confidence 34565554433 445633 46666553 222233332221 24699999 888889999999876554
Q ss_pred C----------CCCcceeeeccc
Q psy16955 521 P----------RKMPLVVQKYLD 533 (842)
Q Consensus 521 ~----------~~~~~VVQkYIe 533 (842)
. ....++||+||.
T Consensus 189 ~~~~~~~~~~~~~~~vlvEe~I~ 211 (1073)
T 1a9x_A 189 EEICARGLDLSPTKELLIDESLI 211 (1073)
T ss_dssp HHHHHHHHHHCTTSCEEEEECCT
T ss_pred HHHHHHHHhhCCCCcEEEEEccC
Confidence 2 235799999997
No 64
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=96.17 E-value=0.039 Score=58.76 Aligned_cols=38 Identities=18% Similarity=0.499 Sum_probs=28.0
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccCC-CCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR-KMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~-~~~~VVQkYIe 533 (842)
-.+|+|| ..++.|+|+.++++..++.. ...+++|+||.
T Consensus 126 ~P~vvKp------~~g~g~~gv~~v~~~~~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 126 PPYFVKP------PCESSSVGARIIYDDKDLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SCEEEEC------SSCCTTTTCEEEC------CCCTTCEEEECCC
T ss_pred CCEEEEE------CCCCCCcCeEEeccHHHhhhhccchhhhhhcc
Confidence 4699999 99999999999998877643 56789999985
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=96.09 E-value=0.023 Score=70.81 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCCceeeeeeeEEec-CCCceEEEEeecCCCC
Q psy16955 633 ALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLD-SKLKPWLLEVNISPSL 694 (842)
Q Consensus 633 ~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~ncFELfGfDfLLD-edLKPWLLEVN~sPSL 694 (842)
.+.++|.+++.+++.+. +.-..+++||++| +++++|+||||..++.
T Consensus 269 ~~~~~i~~~a~~i~~al----------------g~~G~~~vEf~vd~~dg~~~~iEiNpR~~~ 315 (1165)
T 2qf7_A 269 AQRQELAAYSLKIAGAT----------------NYIGAGTVEYLMDADTGKFYFIEVNPRIQV 315 (1165)
T ss_dssp HHHHHHHHHHHHHHHHT----------------TCCEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHc----------------CCCcceeEEEEEECCCCCEEEEEEEcCCCC
Confidence 34556666665555432 1224678999999 8899999999998875
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=95.90 E-value=0.039 Score=69.18 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=0.0
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccCC--------------CCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR--------------KMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~--------------~~~~VVQkYIe 533 (842)
-.+|+|| ..++.|+|+.++++.+++.. ...++||+||+
T Consensus 181 yPvVVKP------~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~ 232 (1236)
T 3va7_A 181 YPVMVKS------TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN 232 (1236)
T ss_dssp ----------------------------------------------------------
T ss_pred CCEEEEe------CCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC
Confidence 4589999 99999999999988766531 35689999997
No 67
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=95.83 E-value=0.0063 Score=69.12 Aligned_cols=125 Identities=23% Similarity=0.236 Sum_probs=75.4
Q ss_pred eecccCCCCcccchHHHHHHHHHHHHHc-CCC-CCCeeeccccC-chhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCC
Q psy16955 431 KINHFPGTFQIGRKDRLWKNLLKCMMKY-GDK-EFGFTPRTYVL-PGDDKRLRASWERNCGNIKWIVKPIHFWFQPASAR 507 (842)
Q Consensus 431 kVNHFPgs~~LtrKd~L~rnL~rm~kk~-g~~-~~~FlP~TfiL-P~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsR 507 (842)
.+|. ||++.+.+|.-++ .|-.|.+.+ |++ ....+|.+|.- +.+.+.+.+.. ..||+|| ..++.
T Consensus 309 i~Na-~gsgv~~dKal~a-~Lp~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~l------~~lViKp------~~g~g 374 (474)
T 3n6x_A 309 LANA-VGTGVADDKDTYI-YVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNL------AELVVKE------VQGSG 374 (474)
T ss_dssp EESC-TTTHHHHSTTTGG-GHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHSG------GGEEEEE------CCCE-
T ss_pred EeCC-CchhhhcCcHHHH-HhHHHHHHhCCHhhhccCCCceecCCHHHHHHHHhch------hheEEEe------cCCCC
Confidence 4564 5777777776543 344554443 432 23345644443 23344444333 4699999 89999
Q ss_pred CccEEEEcccc-----c----cC-CCCcceeeecccC---cccCCC----CeeEEEEEEEEeecCCceEEEEcCceEeee
Q psy16955 508 GIGIKVVHKWN-----Q----IP-RKMPLVVQKYLDD---PYLIND----TKFDLRLYVLVTSFNPLRIYLYDNGLVRFA 570 (842)
Q Consensus 508 GrGI~vi~~l~-----q----I~-~~~~~VVQkYIen---PLLIdG----rKFDLRvYVLVTS~dPLRIYlY~eGLVRfA 570 (842)
|.|+.+-...+ + |. ....||+|+||.- |.+++| +++|||+|++-. -..++...||+|+|
T Consensus 375 g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g----~~~~v~pGgltRva 450 (474)
T 3n6x_A 375 GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG----KTVSLVPGALCRVA 450 (474)
T ss_dssp ----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----SSEEECSCCEEEEE
T ss_pred CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----CceEEecceEEEEe
Confidence 99998755432 1 11 1244999999973 344455 799999999873 24788999999999
Q ss_pred ccc
Q psy16955 571 SVK 573 (842)
Q Consensus 571 t~k 573 (842)
..+
T Consensus 451 ~~~ 453 (474)
T 3n6x_A 451 LRE 453 (474)
T ss_dssp CST
T ss_pred cCC
Confidence 754
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=95.15 E-value=0.04 Score=60.26 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=25.7
Q ss_pred CceeeeeeeEEecCCCceEEEEeecCCCCC
Q psy16955 666 CSYELFGIDILLDSKLKPWLLEVNISPSLH 695 (842)
Q Consensus 666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~ 695 (842)
.....|++++.++.++++|++|||..|.=.
T Consensus 289 ~~~G~~~vE~fvt~dg~i~V~EIapR~gGg 318 (361)
T 2r7k_A 289 GMIGPFCLQSLCNENLELVVFEMSARVDGG 318 (361)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEESSBCGG
T ss_pred CccceEEEEEEEcCCCCEEEEEEcCCCCCC
Confidence 456899999999999999999998877643
No 69
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=94.05 E-value=0.13 Score=55.36 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=19.9
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCCC-----Ccceeeeccc
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRK-----MPLVVQKYLD 533 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~~-----~~~VVQkYIe 533 (842)
+-..|+|| ..++.|+|++++++ +++... .++|||+||.
T Consensus 125 ~~PviVKp------~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRI------EGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SCCEEEEC------C------------C-EECSCCCC----CCEEEECCC
T ss_pred CCcEEEEE------CCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 34689999 88889999999998 887532 4689999997
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.30 E-value=0.093 Score=45.73 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=31.3
Q ss_pred ceEEEcCCCccCCCCCCCCccEEEEccccccC--------------CCCcceeeecccCc
Q psy16955 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIP--------------RKMPLVVQKYLDDP 535 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~--------------~~~~~VVQkYIenP 535 (842)
-.+|+|| ..++.|+|+.++++..++. ....++||+||.-+
T Consensus 46 ~P~vvKp------~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 46 YPVMIKA------SAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp SSEEEEE------TTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCEEEEE------CCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 4699999 8899999999998754432 13679999999743
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=69.68 E-value=4.5 Score=47.45 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=47.4
Q ss_pred CcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 439 FQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 439 ~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
..+.+|..|.-... .++ ...+++.|+.-+.. . + .+ .-||+|| ..|..|.||.++..-.
T Consensus 493 ~llsNKailalLw~----l~p--~hp~LLpT~f~~~~-~-l----~~----~~yV~KP------i~gReG~nV~i~~~~~ 550 (619)
T 2io8_A 493 VIPGNKAILPILWS----LFP--HHRYLLDTDFTVND-E-L----VK----TGYAVKP------IAGRCGSNIDLVSHHE 550 (619)
T ss_dssp GTTTSTTHHHHHHH----HST--TCTTCCCEESSCCH-H-H----HH----HCEEEEE------TTCCTTTTCEEECTTS
T ss_pred HHhhhHHHHHHHHH----hCC--CCCCCCCeeecCCc-c-c----cc----CCEEEcc------CCCCCCCCEEEEeCCC
Confidence 35778887764332 332 23356666643322 1 1 11 2499999 9999999999997521
Q ss_pred c----cC---CCCcceeeecccCcc
Q psy16955 519 Q----IP---RKMPLVVQKYLDDPY 536 (842)
Q Consensus 519 q----I~---~~~~~VVQkYIenPL 536 (842)
+ .. ..+.+|.|+|+.-|-
T Consensus 551 ~~~~~~~~~y~~~~~IyQe~~~lp~ 575 (619)
T 2io8_A 551 EVLDKTSGKFAEQKNIYQQLWCLPK 575 (619)
T ss_dssp CEEEECCCTTTTSCEEEEECCCCCE
T ss_pred hhHhhccccccCCCeEEEEecCCCC
Confidence 1 11 246799999998663
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=53.18 E-value=7.6 Score=45.86 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEcccc
Q psy16955 439 FQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWN 518 (842)
Q Consensus 439 ~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~ 518 (842)
..+.+|.-|.- |- ..|. .+ .+++.||.-+... + .+ .-||+|| ..|-.|.||.+...-.
T Consensus 508 ~LlsNKaiLal-LW---~l~p-~h-p~LLpt~f~~~~~--~----~~----~~yV~KP------i~gReG~nV~I~~~~~ 565 (652)
T 2vob_A 508 VIPSNKAILPM-IY---HNHP-EH-PAILKAEYELTDE--L----RK----HGYAKKP------IVGRVGSNVIITSGDG 565 (652)
T ss_dssp GTTTSTTHHHH-HH---HHCT-TC-TTBCCEESSCCHH--H----HH----HCEEEEE------CC--------------
T ss_pred HhhcCHHHHHH-HH---hccc-CC-CCCCchhhcCCCc--c----cc----CCeEecc------CCCCCCCCEEEEcCCc
Confidence 35778877653 32 3343 22 4566666433321 1 11 2499999 9999999999986422
Q ss_pred cc----C---CCCcceeeecccCcccCCCCeeEEEEE
Q psy16955 519 QI----P---RKMPLVVQKYLDDPYLINDTKFDLRLY 548 (842)
Q Consensus 519 qI----~---~~~~~VVQkYIenPLLIdGrKFDLRvY 548 (842)
++ . ..+++|+|+|+.-| -++|.-.-+.+|
T Consensus 566 ~~~~~~~g~y~~~~~IyQe~~~lp-~f~~~~~~iG~~ 601 (652)
T 2vob_A 566 VVHAESGGKYGKRNMIYQQLFELK-KQDDYYAIIGGW 601 (652)
T ss_dssp -------------CEEEEECCC---CBTTBCCEEEEE
T ss_pred hhhhhcccccCCCCeEEEecccCC-ccCCcceEEEEE
Confidence 21 1 24789999999866 345533333333
No 73
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=30.28 E-value=1.8e+02 Score=32.61 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=59.6
Q ss_pred cceEEEcCCCccCCCCCCCCccEEEEccccccCC-----------------CCcceeeecccCcccCCCCeeEEEEEEEE
Q psy16955 489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPR-----------------KMPLVVQKYLDDPYLINDTKFDLRLYVLV 551 (842)
Q Consensus 489 ~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~~-----------------~~~~VVQkYIenPLLIdGrKFDLRvYVLV 551 (842)
....|||- .+|.-|.||..+++.+++.. -...|||+.|..=-.++|.--.
T Consensus 277 ~PfV~VKA------DaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAE------- 343 (432)
T 3k1t_A 277 EPFVIVKA------DAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAE------- 343 (432)
T ss_dssp CCCEEEEE------ECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEE-------
T ss_pred CceEEEEc------CCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCcccc-------
Confidence 45679999 99999999999998877742 2468999999643344554322
Q ss_pred eecCCceEEEEc----CceEeeecccCCCCCCcccCcceeeccccc
Q psy16955 552 TSFNPLRIYLYD----NGLVRFASVKYSANSETLQDRYMHLTNYSI 593 (842)
Q Consensus 552 TS~dPLRIYlY~----eGLVRfAt~kYs~~~~nl~d~~~HLTNySI 593 (842)
|+ ||+-+ .|+-|..++.=. ..||+...||+--.+.
T Consensus 344 ----PV-VYmid~~vvGgFyRvh~~rg~--dENLNapGm~F~plaf 382 (432)
T 3k1t_A 344 ----PV-IYMMDHFVVGGFYRVHTSRGA--DENLNAPGMHFEPLTF 382 (432)
T ss_dssp ----EE-EEEETTEEEEEEEEEESCCST--TTTTSCCTTCEEEEEC
T ss_pred ----ce-EEEECCEEEEEEEEecCCCCC--ccCCCCCCCEeeeccc
Confidence 32 45544 477788776643 4688888899776544
No 74
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=27.91 E-value=43 Score=38.15 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=38.6
Q ss_pred eeeeeeeEEecCCCceEEEEeec-CCCCCCCChhhHHhHHHHHHHHHHHcCcc
Q psy16955 668 YELFGIDILLDSKLKPWLLEVNI-SPSLHSSSPLDLAVKGPLVQDLFNIVGFH 719 (842)
Q Consensus 668 FELfGfDfLLDedLKPWLLEVN~-sPSL~s~SplD~~VK~~LI~D~L~L~gi~ 719 (842)
-.+.|+|++.|.+|+-|+||-|. .||-....-.++.+-.+++.++|.-..+.
T Consensus 142 ~~i~~~Dl~r~~dG~~~vlEdn~~~PSG~~y~lenR~~~~r~~pelf~~~~v~ 194 (474)
T 3n6x_A 142 AHIAGVDLVRTGENDFYVLEDNLRTPSGVSYMLENRKMMMRLFPELFRRYPVA 194 (474)
T ss_dssp CSEEEEEEEECSSSCEEEEEEECSSCCCHHHHHHHHHHHHHHCHHHHHHSCBC
T ss_pred EEEEEEEEEECCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 46899999999999999999998 67743323335566667777777666654
No 75
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=23.91 E-value=64 Score=32.26 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=26.6
Q ss_pred ceEEEcCCCccCCCCC-----CCCccEEE-EccccccCC-----------------CCcceeeeccc
Q psy16955 490 IKWIVKPIHFWFQPAS-----ARGIGIKV-VHKWNQIPR-----------------KMPLVVQKYLD 533 (842)
Q Consensus 490 ~~WIvKP~~~~~~~~g-----sRGrGI~v-i~~l~qI~~-----------------~~~~VVQkYIe 533 (842)
..+|+|| ..+ +.|.|+.+ +++.+++.. ...++||+||.
T Consensus 57 ~PvvvKp------~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 57 YPVVLKL------MSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SSEEEEE------ECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCEEEEE------ccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 3689999 665 55778888 566544320 25799999996
No 76
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=22.10 E-value=5 Score=38.94 Aligned_cols=17 Identities=59% Similarity=1.189 Sum_probs=11.3
Q ss_pred CCceEEEEeecCCCCCC
Q psy16955 680 KLKPWLLEVNISPSLHS 696 (842)
Q Consensus 680 dLKPWLLEVN~sPSL~s 696 (842)
+++|||-||+.+||-..
T Consensus 105 dl~pwl~ei~~~p~~~~ 121 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLT 121 (144)
T ss_dssp GGHHHHHHTTCC-----
T ss_pred chhHHHHHhCCCcHHHh
Confidence 58999999999999754
Done!