RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16955
(842 letters)
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 321 bits (824), Expect = e-103
Identities = 141/290 (48%), Positives = 184/290 (63%), Gaps = 19/290 (6%)
Query: 430 QKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGN 489
Q +NHFPG+++I RKD LWKN+ K ++F F PRT++LP D +E N N
Sbjct: 9 QALNHFPGSYEITRKDLLWKNI-KRQPCDFGRKFDFLPRTFILPTDLAEFVDYFEDNERN 67
Query: 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKM---PLVVQKYLDDPYLINDTKFDLR 546
WIVKP ASARG GI++ + +QI +++ PLVVQKY++ P LI+ KFD+R
Sbjct: 68 -TWIVKP------SASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIR 120
Query: 547 LYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDA 606
LYVLVTS NPLR+Y+Y GL+RFASVKYS + L D MHLTNYSI K SSS NED
Sbjct: 121 LYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSS--LNEDY 178
Query: 607 EACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYC 666
+GHKW+L + W YLE D + I ++IKT++ E S+L N Q Y
Sbjct: 179 NEPNGHKWSLFNFWKYLEE---KDKEEIWLEIESIIIKTILAAEVEASRL---NVQPLYN 232
Query: 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIV 716
+EL+G D ++D LKPWLLEVN SPSLHS++ LD +K L+ D+ N V
Sbjct: 233 CFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVLNSV 282
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 39.0 bits (91), Expect = 0.013
Identities = 29/172 (16%), Positives = 44/172 (25%), Gaps = 15/172 (8%)
Query: 183 SVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGK 242
D V A P P + + T + S P +
Sbjct: 44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103
Query: 243 NSPSHAGDT---PFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGE 299
SP+ G + P P +P P P P S ++ P P
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPP----PSPAPDLSEMLRPVGSP---GPPPAASPPAAG 156
Query: 300 NQFLPPPATSSHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLS 351
+ ++ RQ ++ T A + P E P P S
Sbjct: 157 ASPAAVASDAASSRQAALPL----SSPEETAR-APSSPPAEPPPSTPPAAAS 203
Score = 35.1 bits (81), Expect = 0.20
Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 10/199 (5%)
Query: 119 RQVGRNHYSPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADG 178
V + S R ++ S SP S+ R +P++ +A
Sbjct: 160 AAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASS 219
Query: 179 FDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVL----RNTTKYYPSNTLAPSDR 234
+ + + + ++ ++ PEN L T +
Sbjct: 220 PAPAPGRSAADDAGASSSD-SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP 278
Query: 235 EPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDE 294
R +S S +P PS SP S P+ S+SS S
Sbjct: 279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS-----SRESSSSSTSSSS 333
Query: 295 EMEGENQFLPPPATSSHRR 313
E P P+ S
Sbjct: 334 ESSRGAAVSPGPSPSRSPS 352
Score = 33.6 bits (77), Expect = 0.55
Identities = 30/192 (15%), Positives = 49/192 (25%), Gaps = 28/192 (14%)
Query: 115 RRQLRQVGRNHYSPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNN 174
R G N S R SS RE + +PSP+ + + R ++
Sbjct: 267 TRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSS 326
Query: 175 AADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDR 234
++ S S G A P P +R P
Sbjct: 327 SSTSSSSESSRG------------AAVSPGPSPSRSPSPSR---------------PPPP 359
Query: 235 EPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDE 294
S K P++ + + +R+R A + P +P +
Sbjct: 360 ADPSSPRKRPRPSRA-PSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLD 418
Query: 295 EMEGENQFLPPP 306
F
Sbjct: 419 AGAASGAFYARY 430
Score = 29.8 bits (67), Expect = 7.3
Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 17/152 (11%)
Query: 143 NMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATP 202
N P P + P R ++ +SS + + +
Sbjct: 253 NECPLPRPAPITL------PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSG 306
Query: 203 PAAPLQVEPENTRVLRNTTKYYPSNTLAPSDR-EPRKSLGKNSPSHAGDTPFPSSPSPHL 261
PA + R +++ S++ + S E + + +P PS P P
Sbjct: 307 PAPS------SPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA 360
Query: 262 S----EKRSRPQKKPSASSKVKCKPEPRKLSK 289
KR RP + PS+ + +P R+
Sbjct: 361 DPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 34.0 bits (78), Expect = 0.30
Identities = 19/149 (12%), Positives = 44/149 (29%), Gaps = 14/149 (9%)
Query: 197 NVQATPPAAPLQ-VEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPS 255
+ + AA L+ P+ + ++ + K ++ + S +G
Sbjct: 197 EGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKK-EASESTVKEESEEESGKRDVIL 255
Query: 256 SPSPHLSEKRSRPQKKP----------SASSKVKCKPEPRK-LSKPVQDEEMEGENQFLP 304
+ + S + + E RK L K ++DE+ + E + +P
Sbjct: 256 EDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVP 315
Query: 305 -PPATSSHRRQESVSAMEVEPILSSTVHE 332
P + + + V
Sbjct: 316 ESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
>gnl|CDD|222735 pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the
ATP-grasp fold predicted to be involved in the
modification/biosynthesis of spore-wall and capsular
proteins.
Length = 262
Score = 33.4 bits (77), Expect = 0.34
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 669 ELFGIDILLDSKLKPWLLEVNISPS 693
EL GIDI LD++ + WLLE N P
Sbjct: 211 EL-GIDIGLDTQGRIWLLEANSKPG 234
>gnl|CDD|165695 PLN00126, PLN00126, succinate dehydrogenase, cytochrome b subunit
family; Provisional.
Length = 129
Score = 32.0 bits (72), Expect = 0.42
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 8 YHRGRTFGPLSSTPYCM-DSLGYEVCCPKCDRAVASINRKRSKSECLDSSKWKSSALVMS 66
Y+ F PLS P+ + +LG + + +I+ R S + + SS L
Sbjct: 4 YNSNARFAPLSDAPFALRGALG------SSNSSFNNIDHLRQSSNLEQARGYTSSPLGAQ 57
Query: 67 EPRMLRSSNRPLFTN 81
P+M S +RPL T+
Sbjct: 58 RPKMSPSGSRPLHTS 72
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.4 bits (74), Expect = 0.53
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 253 FPSS---PSPHLSE-KRSRPQKKPSASSKVKCKPEPR---KLSKPVQDEEMEGENQFLPP 305
FP PSP + KR +KP+ + K K K + + + KP D++ EN+ P
Sbjct: 39 FPEDIEIPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPD 98
Query: 306 PATSSHRRQESVSAMEVEPI 325
S QES SA + I
Sbjct: 99 NNEESGDSQESASANSLSDI 118
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 33.2 bits (77), Expect = 0.53
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 673 IDILLDSKLKPWLLEVNISPSL--HSSSP 699
+D +LD KP+LLEVN P + HS P
Sbjct: 251 VDFMLDEDGKPYLLEVNTQPGMTSHSLVP 279
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 32.3 bits (73), Expect = 1.0
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 201 TPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPH 260
PA+ V + L NT ++ ++ K SP H
Sbjct: 234 DSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKH--------KKKKQ 285
Query: 261 LSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPP 305
EK + +KK +C +PVQ+ +E E LPP
Sbjct: 286 RKEKEEKKKKK--KHHHHRCHHSDGGAEQPVQNGAVEEEP--LPP 326
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 32.6 bits (74), Expect = 1.2
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 33/190 (17%)
Query: 127 SPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADGFDSSSVDG 186
S S + + + NHS ++SS Q +
Sbjct: 221 SKGLTSTKELVPVQ----NSGGNHSLSKSSNSQTPELEYSEKGK----------DHHHSH 266
Query: 187 GSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSL------ 240
+++ + N + + LQ + ++ K PS++ +E +
Sbjct: 267 NHQHHSIGINNHHSKHADSKLQ---TIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAG 323
Query: 241 ---GKNSPS--HAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEE 295
K+S S H+ SSP H S S P S + + ++ SK
Sbjct: 324 SIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNES-----KQKRASKSSSGAR 378
Query: 296 MEGENQFLPP 305
++
Sbjct: 379 DSKKDASGMS 388
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 32.0 bits (72), Expect = 1.6
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 19/106 (17%)
Query: 173 NNAADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPS 232
N+ G +SS S+ + TV +PPA L P PS ++PS
Sbjct: 570 NSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPAT-----------PSKIVSPS 618
Query: 233 DREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKV 278
P LG SPS PSSP + S P +S KV
Sbjct: 619 TSPPASHLG--SPSTT-----PSSPESS-IKVASTETASPESSIKV 656
>gnl|CDD|233813 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
protein. Members of this protein family contain a
region of homology to the RimK family of
alpha-L-glutamate ligases (TIGR00768), various members
of which modify the Glu-Glu C-terminus of ribosomal
protein S6, or tetrahydromethanopterin, or a form of
coenzyme F420 derivative. Members of this family are
found so far in various Vibrio and Pseudomonas species
and some other gamma and beta Proteobacteria. The
function is unknown.
Length = 317
Score = 31.0 bits (70), Expect = 2.8
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 615 TLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGID 674
T++++W HH D + + + H L A G+D
Sbjct: 202 TIRAVWFNQPITHHPDTGK---DLSGLQVP------HWERLLELAASCWELTGLGYMGVD 252
Query: 675 ILLDSKLKPWLLEVNISPSL 694
++LD + P +LE+N P L
Sbjct: 253 MVLDKEEGPLVLELNARPGL 272
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 30.7 bits (69), Expect = 3.0
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 245 PSHAGDTPFPSS---PSPHLSEKRSRPQKKPSASSKVKCKPE---PRKLSKPVQDEEM-- 296
P+ + +S P +S ++ Q+ + + + + + +P ++
Sbjct: 62 PAPGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNN 121
Query: 297 EGENQFLP-PPATSSHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHP 346
LP PAT + R SV E P ++ V V++P P
Sbjct: 122 VAVTSTLPTEPATVAPVRNASVPTAE-RPAITRPVRAQAVSEPAVEPKAAK 171
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 30.4 bits (69), Expect = 3.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 243 NSPSHAGDTPFPSSPSPHLSEK-----RSRPQKKPSASSKVKCKPEPRKLSKPVQDEE 295
P+ P P P E +P+ KP KV+ P P+ KPV +E+
Sbjct: 85 LDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEK 142
Score = 29.6 bits (67), Expect = 6.4
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 248 AGDTPFPSSPSPHLS--EKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPP 305
AGD PS ++ P+ P K K +P+ KP Q E + P
Sbjct: 77 AGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPK 136
Query: 306 PATSS 310
P
Sbjct: 137 PVVEE 141
>gnl|CDD|178401 PLN02804, PLN02804, chalcone isomerase.
Length = 206
Score = 30.2 bits (68), Expect = 3.5
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 687 EVNISPSLHSSS-PLDLAVKG------PLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNL 739
++ P + +SS PL L G +Q F +G +L + H Q G S L
Sbjct: 8 DIPFPPQITTSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHLQSWKGKPGSEL 67
Query: 740 LYDKRLYTPLLS 751
D + L+
Sbjct: 68 AEDDDFFQALIQ 79
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 31.0 bits (69), Expect = 3.9
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 202 PPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHL 261
PPAAP E + R + P P + PR S +S SH SPS
Sbjct: 1534 PPAAPPGPELADRHADRRRSTKGPQR---PGGKRPRSSSSSSSASH------DRSPSSSS 1584
Query: 262 SEKRSRPQKKPSASSKVKCKPEPR 285
+ RP + S ++ +P R
Sbjct: 1585 RRRDGRPSSRRRPSRRMSARPPSR 1608
>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.
Length = 250
Score = 30.2 bits (68), Expect = 4.4
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 252 PFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPAT 308
+ S L + PQ + S S + K E +S V + G ++ P P
Sbjct: 5 SLSRASSSTLVVSKPNPQSRSSRS--LGAKSEGSLVSVTVASTDGGGISERKPSPLE 59
>gnl|CDD|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. The
EcCorA-ZntB_like family includes the Mg2+ transporters
Escherichia coli and Salmonella typhimurium CorAs, which
can also transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB_like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, as in some ZntB family
proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 281
Score = 30.2 bits (69), Expect = 4.6
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 718 FHLPEKISTHNQKE-FGLNHSN----LLYDKRLYTPLLSNEERDKHVAFVQSESREDYLH 772
F +P+K+ +++ FG + + D LL + K + S E +L+
Sbjct: 45 FGIPDKLDVLGKRDRFGFYITKNRLVFIDDDGFVLKLLERIQEKKSW---KGPSLERFLY 101
Query: 773 SIAETLTPDDVRHLVVYEDELTQL 796
E L DD+ +L YE++L +L
Sbjct: 102 DFLEYLIKDDLEYLEKYEEKLEEL 125
>gnl|CDD|217527 pfam03387, Herpes_UL46, Herpesvirus UL46 protein.
Length = 443
Score = 30.1 bits (68), Expect = 5.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 221 TKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPS 273
TK+Y LA P +S SPS G F SPSP L R+RP + S
Sbjct: 394 TKHY-EEVLASLASAPLESRRAASPS--GAPSFGQSPSPPLRSARARPPGQGS 443
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.3 bits (68), Expect = 5.7
Identities = 45/201 (22%), Positives = 63/201 (31%), Gaps = 21/201 (10%)
Query: 201 TPPAAPLQVEPENT-RVLRNTTKYYPSNTLAPSDR--EPRKSLGKNSP---SHAGDTPFP 254
P AP EP T R R + AP D +PR + +HA D P P
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPP-P 2628
Query: 255 SSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHRRQ 314
SPSP +E P + + P P ++S+P A+S +R
Sbjct: 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP-----RRARRLGRAAQASSPPQRP 2683
Query: 315 ESVSAME-VEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFP 373
+A V + S P AP H + + P R +S P
Sbjct: 2684 RRRAARPTVGSLTSLADPPPPPPTPEPAP--HALVSATPLPPGPAAARQASPALPAAPAP 2741
Query: 374 SPAAKHLKWKLSPITPVVVRK 394
P TP +
Sbjct: 2742 PAVPA------GPATPGGPAR 2756
Score = 29.5 bits (66), Expect = 9.0
Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 16/173 (9%)
Query: 144 MTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATPP 203
+T S + S P P + A ++ G + PP
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842
Query: 204 AAPLQ--------VEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPS 255
P V P R ++ + AP+ R P + L + + S + + F
Sbjct: 2843 PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA-RPPVRRLARPAVSRSTE-SFAL 2900
Query: 256 SPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPAT 308
P +P A + +P+P +P Q P T
Sbjct: 2901 PPDQ------PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 30.1 bits (67), Expect = 6.1
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 209 VEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRP 268
VEP T+V + ++ + PS + P + K SP A D P S ++EK P
Sbjct: 156 VEP-GTKVAIISKSEDAASQVTPSQKIPETTDPKPSPP-AEDKQKPKVESAPVAEKPKAP 213
Query: 269 QKKPSASSKVKCKPEPRK 286
P K P K
Sbjct: 214 SSPPPPKQSAKEPQLPPK 231
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 30.0 bits (67), Expect = 6.6
Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 27/187 (14%)
Query: 224 YPSNTLAPSD-REPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKP 282
+P + P D EP+K S P P + K+P + K P
Sbjct: 581 FPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPE---LLDIPKSPKRPESPKSPKRPP 637
Query: 283 EPRKLSKPVQDEEMEGENQFLPPPA------------------TSSHRRQESVSAM---- 320
P++ S P + E + PP + ++ + +E+ + +
Sbjct: 638 PPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDE 697
Query: 321 EVEPILSSTVHEAKVTKPNEAPNLHPGL-RLSLFTNVPPYIRFSSHDDQTQLFPSPAAKH 379
E IL T+ E T L P L R F P + D + F P +
Sbjct: 698 SFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEER 757
Query: 380 LKWKLSP 386
+ +P
Sbjct: 758 TFFHETP 764
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 30.0 bits (68), Expect = 6.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 59 KSSALVMSEPRMLRSSNRPLFTNSNT 84
K + + M + +R NR +F S
Sbjct: 737 KLARVSMQVLKDIRVKNRVVFKGSKA 762
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 29.9 bits (67), Expect = 7.5
Identities = 30/134 (22%), Positives = 45/134 (33%), Gaps = 1/134 (0%)
Query: 206 PLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKR 265
PL E E+ ++ T+ R P + + ++SPS DT S+PS
Sbjct: 381 PLFPEDESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPPPRAS 440
Query: 266 SRP-QKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEP 324
P Q+ +SS+V P +L + E Q P + E
Sbjct: 441 ETPEQETSRSSSEVSLDPHQSELKSEKKKARPEVSKQRFPSRDVWEDAPESQELVTTEET 500
Query: 325 ILSSTVHEAKVTKP 338
VTKP
Sbjct: 501 PEEVKSSSPGVTKP 514
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.8 bits (67), Expect = 7.7
Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 19/146 (13%)
Query: 188 SATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSH 247
+ T + PP A EPE R R + Y DR P P
Sbjct: 85 AITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGP--RADDRPPGLPRQDQLP-- 140
Query: 248 AGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCK------PEPRKLSKPVQD---EEMEG 298
T P+ P+ ++R P P A+ + P + P +E +
Sbjct: 141 ---TARPAYPA---YQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDR 194
Query: 299 ENQFLPPPATSSHRRQESVSAMEVEP 324
E P RR + +
Sbjct: 195 EPYDAGRPEYDQRRRDYDHPRPDWDR 220
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This
family represents the C-terminal, catalytic domain of
the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
D-Alanine is one of the central molecules of the
cross-linking step of peptidoglycan assembly. There are
three enzymes involved in the D-alanine branch of
peptidoglycan biosynthesis: the pyridoxal
phosphate-dependent D-alanine racemase (Alr), the
ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Length = 201
Score = 29.1 bits (66), Expect = 8.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 673 IDILLDSKLKPWLLEVNISPSLHSSSPL 700
ID L + +L EVN P S S
Sbjct: 154 IDFFLTEDGEIYLNEVNTMPGFTSISLY 181
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 29.0 bits (65), Expect = 8.0
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 17/112 (15%)
Query: 168 PKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSN 227
P ++ V+ TPPA P+ P
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLP---------ETPPAVPVPAPAPAVAAAAAQAAAAP-- 150
Query: 228 TLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVK 279
+ P K K+ A P P+ K++ KP+A
Sbjct: 151 ------KAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTAT 196
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 28.9 bits (65), Expect = 8.9
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 42 SINRKRSKSECLDSSKWKSSALVMSEPRM-LRSSNRPLFTNSNTIYKTEVQRASKLCERC 100
+NR L +W+ +V S + R PLFTN E R ER
Sbjct: 55 ELNRGGFDI-DLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVER- 112
Query: 101 DDSKNSYSVEMEELRRQLRQVGRNHY 126
++ELRR + + +HY
Sbjct: 113 ----------LKELRRLIHSLPDHHY 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,555,589
Number of extensions: 3934123
Number of successful extensions: 3369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3330
Number of HSP's successfully gapped: 70
Length of query: 842
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 737
Effective length of database: 6,280,432
Effective search space: 4628678384
Effective search space used: 4628678384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)