RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16955
(842 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 271 bits (695), Expect = 9e-84
Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 61/383 (15%)
Query: 379 HLKWKLSPITPVVVRKTILNTGYRLVRKSSE-WCGTWGKHMK---SLSFRTLKESQKINH 434
++ + S + V + + + ++ +++ + + G+ + Q +N+
Sbjct: 8 VVRDENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNY 67
Query: 435 FPGTFQIGRKDRLWKNL-----LKCMMKYGDKEFGFTPRTYVLPGDD------------- 476
+ G ++ RK L K + L + + + P P
Sbjct: 68 YRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPR 127
Query: 477 --------KRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI-----PRK 523
E GN+ WI K + A+G GI + ++ +
Sbjct: 128 TDEREEFRSSFNKKKENEEGNV-WIAKS------SSGAKGEGILISSDATELLDFIDNQG 180
Query: 524 MPLVVQKYLDDPYLINDT--KFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETL 581
V+QKYL+ P L+ KFD+R +VLV + IYLY G++R +S YS +
Sbjct: 181 QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTN--F 236
Query: 582 QDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVA-ALQDSIVD 640
QD HLTN+ I K S + G++ + YL T ++++ ++ I +
Sbjct: 237 QDMTSHLTNHCIQKEHSKNYGRYE----EGNEMFFEEFNQYLVTSLNINLENSILCQIKE 292
Query: 641 VVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700
++ + C E +IS + Y S++LFG D ++D LK WL+EVN +P+ L
Sbjct: 293 IIRVCLSCLEPAIS-----TKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACA--QKL 345
Query: 701 DLAVKGPLVQDLFNIVGFHLPEK 723
+ +V + V F L E+
Sbjct: 346 YAELCKGIVDLAISSV-FPLNEE 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 4e-15
Identities = 92/638 (14%), Positives = 171/638 (26%), Gaps = 206/638 (32%)
Query: 280 CKPEPRKLSKPVQDEEMEGENQFLPPPATSSHR-------RQESVSAMEVEPILSSTVHE 332
CK + EE++ + + R +QE + VE +L
Sbjct: 35 CKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL------ 87
Query: 333 AKVTKPNEAPNLHPGL--RLSLFTNVP--PYIRFSSHDDQTQLFPSPAAKHLKWKLSPIT 388
+ N + L + P + D+ AK+ +L P
Sbjct: 88 ----RIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 389 PVVVRKTILNTGYRLVRKSSEWCGTWGKHM----KS-LSFRTLKESQKINHFPGTFQIGR 443
+R+ +L + ++ G + K+ ++ + F+I
Sbjct: 139 --KLRQALLEL------RPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMD--FKI-- 184
Query: 444 KDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDD--KRLRASWERNCGNIKWIVKPIHFWF 501
W NL C +P T + ++ +W + I IH
Sbjct: 185 ---FWLNLKNC----------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SI 230
Query: 502 QPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTK----FDLRLYVLVTSFNPL 557
Q R + K L+V L + + + K F+L +L+T+
Sbjct: 231 QAELRRLL------KSKPYENC--LLV---LLN---VQNAKAWNAFNLSCKILLTT---- 272
Query: 558 RIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDA----EACHGHK 613
R + F S + + +L M LT + + Y E +
Sbjct: 273 R----FKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 614 WTL----------KSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQS 663
L + W + HV+ L I E S++ L A +
Sbjct: 328 RRLSIIAESIRDGLATWDNWK---HVNCDKLTTII-----------ESSLNVLEPAEYRK 373
Query: 664 RYCSYELF--GIDI----------------------------LLDSKLKPW--------- 684
+ +F I L++ + K
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 685 --LLEVNISPSLHSS--------SPLDLAVKGPLVQD--LFNIVGFHLPEKISTHNQKEF 732
+++ +LH S D P D ++ +G HL F
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 733 G------------LNHS-----------NLLYDKRLYTPLLSNEERDKHVAFVQS-ESRE 768
+ H N L + Y P + D + + +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKYERLVNAIL 549
Query: 769 DYLHSIAETLTPDDVRHLV----------VYEDELTQL 796
D+L I E L L+ ++E+ Q+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 54.5 bits (130), Expect = 1e-07
Identities = 107/623 (17%), Positives = 185/623 (29%), Gaps = 197/623 (31%)
Query: 76 RPLFTNS--NTIYK--TEVQRASKLCER-CDDSKNSYSVEMEELRRQLRQVGRNH---YS 127
+ + + + I V +L + +EE+ R N+ S
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI------NYKFLMS 96
Query: 128 P-RNESVRSSLVSREFNMTPSPNHSDN-----------------RSSVRQLRPRRFVLP- 168
P + E + S+++R + ++DN R ++ +LRP + VL
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 169 ------KTPLNNAADGFDSSSVDGGSATNTVTVY--NV-QATPPAAPLQVEPENTRVLRN 219
KT + A D S V ++ N+ P L+ +L+
Sbjct: 157 GVLGSGKTWV--ALDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLE-------MLQK 204
Query: 220 TTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPH----LSEKRSRPQKKPSAS 275
N + SD L +S S P + L ++ K +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---AKAWNA 261
Query: 276 SKVKCKPEPRKL----SKPVQDEEMEGENQFLPPPATSSHRRQESVSAM----EVEPILS 327
+ CK L K V D FL AT++H + S EV+ +L
Sbjct: 262 FNLSCK----ILLTTRFKQVTD--------FL-SAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 328 STVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLK-WKLSP 386
+ P E +P RLS+ + KH+ KL+
Sbjct: 309 KYLDCRPQDLPREVLTTNP-RRLSIIAE-----SIRDGLATWDNW-----KHVNCDKLTT 357
Query: 387 ITPVVVRKTILNTGYRLVRKSSEWCGTWGKHM-KSLS-FRTLKESQKINHFP-GTFQIGR 443
I ++ LN V + +E+ + M LS F S I P +
Sbjct: 358 I-----IESSLN-----VLEPAEY-----RKMFDRLSVFP---PSAHI---PTILLSL-- 394
Query: 444 KDRLWKNL--------LKCMMKYGDKEFGFTPRTYVLPG---------DD-----KRLRA 481
+W ++ + + KY E T +P ++ + +
Sbjct: 395 ---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 482 SWERNCGNIKWIVKPIH-----FWFQPASARGIGIKVVH-KWNQIPRKMPLVVQKYLDDP 535
+ + P + + IG H K + P +M L +LD
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH-------IG---HHLKNIEHPERMTLFRMVFLDFR 501
Query: 536 YL----------------INDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSE 579
+L I +T L+ Y + Y+ DN E
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY---------KPYICDN----------DPKYE 542
Query: 580 TLQDRYMH-LTNYSINKMSSSYT 601
L + + L N + S YT
Sbjct: 543 RLVNAILDFLPKIEENLICSKYT 565
Score = 39.8 bits (92), Expect = 0.004
Identities = 76/489 (15%), Positives = 123/489 (25%), Gaps = 174/489 (35%)
Query: 71 LRSSNRP--LFTNSNTIYKTEVQRASKLCERCDDSKN---SYSVEMEELRRQLRQVGRNH 125
L++ N P + + Q R D S N ELRR L+ + +
Sbjct: 189 LKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPY 243
Query: 126 YSPRN----ESVRSSLVSREFN------MTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNA 175
+V+++ FN +T + + L L++
Sbjct: 244 --ENCLLVLLNVQNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTT--HISLDHH 294
Query: 176 ADGFDSSSVDG--GSATNTVTVYNVQATPPAA----PLQVE--PENTRVLRNTTKYYPSN 227
+ V + Q P P ++ E+ R T +
Sbjct: 295 SMTLTPDEVKSLLLKYLDC----RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 228 TLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSR-------PQKKPSASSKVKC 280
SL P +E R P S+ +
Sbjct: 351 NCDKLTTIIESSLNVLEP----------------AEYRKMFDRLSVFPP-----SAHI-- 387
Query: 281 KPEPRKL-----SKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEPI-LSSTVH--- 331
P L ++ + M N+ H+ S +E +P + ++
Sbjct: 388 ---PTILLSLIWFDVIKSDVMVVVNKL--------HKY----SLVEKQPKESTISIPSIY 432
Query: 332 -EAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPV 390
E KV NE LH + V Y + L P
Sbjct: 433 LELKVKLENE-YALHRSI-------VDHY--------------NIPKTFDSDDLIPPY-- 468
Query: 391 VVRKTILNTGYRLVRKSSEWCGTWGKHMKS--------------LSFRTLKESQKINHFP 436
Y + G H+K+ L FR L+ QKI H
Sbjct: 469 -------LDQY--------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRH-D 510
Query: 437 GTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKP 496
T L N L+ + Y + Y+ D K ER I
Sbjct: 511 STAWNASGSIL--NTLQQLKFY---------KPYICDNDPKY-----ERLVNAI------ 548
Query: 497 IHFWFQPAS 505
+ F +
Sbjct: 549 LDFLPKIEE 557
Score = 38.3 bits (88), Expect = 0.013
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 727 HNQKEFGLNHSNLLYDKRLYTPLLSNEERD---KHVAFVQSESREDYLHSIAETLTPDDV 783
H+ +F Y K + + + K V +D SI L+ +++
Sbjct: 4 HHHMDFETGEHQYQY-KDILSVFEDAFVDNFDCKDV--------QDMPKSI---LSKEEI 51
Query: 784 RHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGP--RYYNMLFDAWEY 830
H+++ +D ++ + ++ E Y L +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-04
Identities = 54/297 (18%), Positives = 91/297 (30%), Gaps = 101/297 (34%)
Query: 528 VQKYLDDPYLI------NDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETL 581
V K+L Y+ +FD L + +T F YL N + A+ N TL
Sbjct: 61 VGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTL 116
Query: 582 QDRYMHLTNY---------SINKMSSS-------------YTQ------NEDAEACHGHK 613
+ NY +K S+S +D
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-------- 168
Query: 614 WTLKSLWSYLETEHHVDVAALQD------SIVDVVIKTMICGEHSISQLTRANQQ-SRYC 666
Y E E L+D +V +IK E +S+L R +
Sbjct: 169 --------YFE-E-------LRDLYQTYHVLVGDLIKFS--AET-LSELIRTTLDAEKVF 209
Query: 667 SYELFGIDILLDSKLKPWLLEVNISPSLH--SSSPLDLAVKGPLVQDLFNIVGFHLPEKI 724
+ G++IL WL + +P S P + PL+ + + + +
Sbjct: 210 TQ---GLNIL------EWLENPSNTPDKDYLLSIP----ISCPLIG-VIQLAHY-----V 250
Query: 725 STHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFV--QSESREDYLHSIAETLT 779
T K G L L + + A +++S E + S+ + +T
Sbjct: 251 VTA--KLLGFTPGELR--SYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Score = 45.0 bits (106), Expect = 1e-04
Identities = 76/524 (14%), Positives = 139/524 (26%), Gaps = 205/524 (39%)
Query: 38 RAVASINRKRSKSECLDSSKWKSSALVMSEPRMLRSSNR---PLFT------NSNT---- 84
A R K +SAL R+ L N++
Sbjct: 128 TARIMAKRPFDKKS--------NSAL-------FRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 85 ---IYKTE-------VQRASKLCERC----DDSKNSYSVEMEELRRQLRQVGRNHYSPRN 130
+Y+T ++ +++ D++ ++ + + L +P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSN---TPDK 228
Query: 131 ESVRSSLVSREFNMTPSPNHSDNRSSVRQL-------RPRRFVLPKTPLNNAADGFDSSS 183
+ + S +S + V QL + +L TP ++
Sbjct: 229 DYLLSIPIS--CPL----------IGVIQLAHYVVTAK----LLGFTP-GELRSYLKGAT 271
Query: 184 VDGG---SAT-------------NTVTVYNV---------QATP----PAAPLQVEPENT 214
+A + V +A P P + L+ EN
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 215 R-------VLRNTTKYY------PSNTLAPSDREPRKSLGKNSPSH---AGDTPFPSS-- 256
+ N T+ +N+ P+ ++ SL N + +G P S
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVSG---PPQSLY 387
Query: 257 -PSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSS--HRR 313
+ L R K PS + + RKL + N+FLP +S H
Sbjct: 388 GLNLTL-----RKAKAPSGLDQSRIPFSERKL---------KFSNRFLP---VASPFH-- 428
Query: 314 QESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPY-------IRFSSHD 366
+L + + + +P Y +R S
Sbjct: 429 ---------SHLLVPASDLINKDLVKNNVSFNAK---DI--QIPVYDTFDGSDLRVLSGS 474
Query: 367 DQTQLFPSPAAKHLKWKLSPITPVVVRKT-ILNTG-------YRLVRKSSEWCGTWGKHM 418
++ +KW+ + T IL+ G L ++ + GT
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKA----THILDFGPGGASGLGVLTHRNKD--GTG---- 524
Query: 419 KSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKE 462
R + GT I D YG K+
Sbjct: 525 ----VRVI--------VAGTLDINPDD-----------DYGFKQ 545
Score = 44.7 bits (105), Expect = 2e-04
Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 69/247 (27%)
Query: 566 LVRFASVKYSAN--SETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYL 623
+ +F + Y ++ + ++ + N + + + Y + D H +L + L
Sbjct: 61 VGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----H-----ALAAKL 108
Query: 624 ETEHHVDVAALQDSI-----VDVVIKTMICGEHSISQLTRANQQSRYCSYELFG----ID 674
E+ + ++ I ++ K + + S L RA + +FG D
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 675 ILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGL 734
+ +L+ L+ + LV DL L E I T E
Sbjct: 168 DYFE-ELR----------DLYQTYH-------VLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 735 NHS-NLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDEL 793
N+L L N + +DYL SI + P L+ +
Sbjct: 210 TQGLNIL-------EWLENPS---------NTPDKDYLLSIPISC-P-----LIG----V 243
Query: 794 TQLGSFI 800
QL ++
Sbjct: 244 IQLAHYV 250
Score = 32.7 bits (74), Expect = 0.65
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 45/151 (29%)
Query: 700 LDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYD--KRLYTPLLSNEERDK 757
+DL QD++N H + +G + +++ + L + E+ K
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDT--------YGFSILDIVINNPVNLT--IHFGGEKGK 1682
Query: 758 HVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEG 817
+ RE+Y +++E + K+F H F
Sbjct: 1683 RI-------RENYS--------------AMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 818 PRYYNMLFD---------AWEYAHHAD-RSK 838
+ +L E A D +SK
Sbjct: 1722 EK--GLLSATQFTQPALTLMEKAAFEDLKSK 1750
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 33.6 bits (76), Expect = 0.17
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 228 TLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKL 287
L DRE + K + + P P + + + + + + P P +
Sbjct: 85 KLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALV 144
Query: 288 SKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEPILSSTVHEAK 334
D E +Q PP S S S+ + + ++ AK
Sbjct: 145 RSASSDTSEELNSQDSPPKQDS--TAPSSTSSSDPILDFNISLAMAK 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.21
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 677 LDSKLKPWLLEVNISPSLHSSSPLDLAVKGPL 708
L + LK + + S+P LA+K +
Sbjct: 25 LQASLKLY------AD---DSAPA-LAIKATM 46
Score = 29.9 bits (66), Expect = 2.0
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 210 EPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNS 244
E + + L+ + K Y A D P +L +
Sbjct: 18 EKQALKKLQASLKLY-----AD-DSAP--ALAIKA 44
Score = 28.8 bits (63), Expect = 5.3
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 15/36 (41%)
Query: 477 KRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIK 512
K+L+AS +K + SA + IK
Sbjct: 23 KKLQAS-----------LKL----YADDSAPALAIK 43
Score = 28.4 bits (62), Expect = 6.9
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 314 QESVSAMEVEPILSSTVHEAKVTKPNEAPNL 344
++++ ++ +S K+ + AP L
Sbjct: 19 KQALKKLQ-----ASL----KLYADDSAPAL 40
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 31.9 bits (71), Expect = 1.1
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 533 DDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYS 592
D D D L ++N + L D ++ F VKY + R+ +
Sbjct: 556 DASVYRADDSGDSVLINDPPAWNTFNLVLRDESVLEF--VKY-VSWSAKSSRWDVKMKWD 612
Query: 593 INKMSSSYTQNEDAEACHGH 612
+ ++E E H H
Sbjct: 613 VKSCDEDGQEDEALEHHHHH 632
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 31.0 bits (71), Expect = 1.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 673 IDILLDSKLKPWLLEVNISP 692
D +LD+ + LEVN +P
Sbjct: 265 ADFMLDAAGNAYFLEVNTAP 284
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 1.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 262 SEKRSRPQKKPSASSKVKCKPE----PRKLSKPVQDEEMEGE 299
S + ++ P+ + + C PE P K+ V+ EG+
Sbjct: 6 SIDKRAGRRGPNLNIVLTC-PECKVYPPKI---VERFS-EGD 42
Score = 29.6 bits (66), Expect = 2.7
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 29/89 (32%)
Query: 1 MATSEVAYHRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVASINRKRSKSE--CLDSSKW 58
M T E R GP + + CP+C I + S+ + C
Sbjct: 1 MMTRESIDKRAGRRGPNLNI---------VLTCPECKVYPPKIVERFSEGDVVC------ 45
Query: 59 KSSALVMSEPRML------RSSNRPLFTN 81
LV+S+ +++ R+ F+N
Sbjct: 46 ALCGLVLSD-KLVDTRSEWRT-----FSN 68
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 30.6 bits (70), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 673 IDILLDSKLKPWLLEVNISP 692
ID++LDS + +LLE N SP
Sbjct: 256 IDVMLDSDGQFYLLEANTSP 275
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 30.1 bits (68), Expect = 3.0
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 672 GIDILLDSKLKPWLLEVNISPSLH 695
+D+ + + EVN +
Sbjct: 235 AVDLFESER-GLLVNEVNHTMEFK 257
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 29.6 bits (65), Expect = 3.5
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 200 ATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSP 259
+ P V + +R R + S EP S S A P + P
Sbjct: 121 SHAPVRAGCVNFDYSRTRRCVGRRDLRPANTTSTWEPPVS----SDDEASSQSKPLATQP 176
Query: 260 HLSEKRSRPQKKPSASSKVKCKPEPRK 286
+ + P ++ S + + R+
Sbjct: 177 PVLALSNAPPRRVSPTRGRRRHTRLRR 203
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 29.5 bits (67), Expect = 4.1
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 20/80 (25%)
Query: 465 FTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKM 524
TP T V + +L+A WE++ I+KP+ G I V + + +
Sbjct: 134 LTPETLVT-RNKAQLKAFWEKHS---DIILKPLD------GMGGASIFRVKEGDPNLGVI 183
Query: 525 ----------PLVVQKYLDD 534
+ Q YL
Sbjct: 184 AETLTEHGTRYCMAQNYLPA 203
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 29.5 bits (66), Expect = 4.1
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 253 FPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHR 312
+ ++ Q +P+AS + S +++ + P S
Sbjct: 133 IMT-SGERDTKSIQ-IQTEPTASVSSGNESRHDSESMHDPNDKKDHTPDHDVVPDIESST 190
Query: 313 RQESVSAMEVE 323
+ + +E E
Sbjct: 191 DKGEIRDIEGE 201
>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA,
TB, catechol, cholesterol, steroid, aromatic
hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium
tuberculosis} PDB: 2zi8_A*
Length = 300
Score = 29.6 bits (66), Expect = 4.3
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 10/107 (9%)
Query: 714 NIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHS 773
+++GF L + + Q + R +AF+ + +H
Sbjct: 162 DVLGFRLRDSMRLPPQMVGRPAD-----GPPAWLRFFGCNPRHHSLAFLPMPTSSGIVHL 216
Query: 774 IAETLTPDDVRHLVVYEDELTQLGSFIKVFPT--TTSHKYFQYFEGP 818
+ E DDV + D + + Y + P
Sbjct: 217 MVEVEQADDVGLCL---DRALRRKVPMSATLGRHVNDLMLSFYMKTP 260
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown
function; HET: MSE; 1.90A {Bacillus subtilis} SCOP:
b.49.3.1 c.56.5.4
Length = 373
Score = 29.6 bits (67), Expect = 4.7
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 770 YLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWE 829
Y+H+ A L DD + V +L + IK T + Y EG ++
Sbjct: 325 YIHTHAAMLHRDDYENAV----KL--ITEVIKKLDRKTVDE-ITYQEGGSHH-------- 369
Query: 830 YAHH 833
+ HH
Sbjct: 370 HHHH 373
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure
initiative, structural G PSI, midwest center for
structural genomics; 2.10A {Vibrio cholerae} SCOP:
c.52.1.26
Length = 385
Score = 29.0 bits (64), Expect = 7.5
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 744 RLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVR 784
RL TPLL + +H+ F+ ++ +++ L ++
Sbjct: 16 RLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNIS 56
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 28.7 bits (63), Expect = 7.5
Identities = 32/245 (13%), Positives = 74/245 (30%), Gaps = 46/245 (18%)
Query: 452 LKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGI 511
+ + K P ++ + + + + + +IVKP + + +
Sbjct: 99 REEINALLIKNNIPIPNSFSVK-SKEEVIQLLQSKQLILPFIVKPEN---AQGTFNAHQM 154
Query: 512 KVVHKWNQIPR-KMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFA 570
K+V + I P + Q Y IN ++++ +
Sbjct: 155 KIVLEQEGIDDIHFPCLCQHY------INHNNKIVKVFCI-------------------- 188
Query: 571 SVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHK-WTLKSLWSYLETEHHV 629
+ T S+ + ++ D H + +
Sbjct: 189 -----------GNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIEN 237
Query: 630 DVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKL-KPWLLEV 688
I++ I + E + L A + +L GID + +++ P +++V
Sbjct: 238 SANRFGSKILEDPILLNLTSEAEMRDL--AYKVRCALGVQLCGIDFIKENEQGNPLVVDV 295
Query: 689 NISPS 693
N+ PS
Sbjct: 296 NVFPS 300
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 28.9 bits (64), Expect = 8.1
Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 17/178 (9%)
Query: 323 EPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPS-----PAA 377
EP + T GL+++ + F H+D ++ A
Sbjct: 186 EPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245
Query: 378 KHLKWKLSPITPVVVRKTILNTGYR----LVRKSSEWCGTWGKHMKSLSFRTLK--ESQK 431
H P L+ Y + + + + K ++ R L +
Sbjct: 246 FHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPL 305
Query: 432 INHFPGTFQIGRKDRLW--KNLLKCMMKYGDKEFGF---TP-RTYVLPGDDKRLRASW 483
G IG K+ + + + G TP R ++ + + + W
Sbjct: 306 DAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREW 363
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,355,922
Number of extensions: 708068
Number of successful extensions: 1571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 42
Length of query: 842
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 740
Effective length of database: 3,853,851
Effective search space: 2851849740
Effective search space used: 2851849740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.1 bits)