RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16955
         (842 letters)



>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
           {Escherichia coli, gene ddlB [TaxId: 562]}
          Length = 210

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 670 LFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVK 705
              ID++LDS  + +LLE N SP + S S + +A +
Sbjct: 157 WGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAAR 192


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
           C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 31.3 bits (69), Expect = 0.41
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 1/125 (0%)

Query: 582 QDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDV 641
           Q     L   +++          ++ A    +     L   +   H             +
Sbjct: 68  QYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 127

Query: 642 VIKTMICGEHSISQLTRANQQSRYCSYE-LFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700
            +   +  E          +  +      L  +D+ L    +  L EVN  P   S S  
Sbjct: 128 TVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRY 187

Query: 701 DLAVK 705
              + 
Sbjct: 188 PRMMA 192


>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
           C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
          Length = 228

 Score = 29.2 bits (64), Expect = 1.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 670 LFGIDILLDSKLKPWLLEVNISPSLHSSS 698
              +D LLD    P+L E N  P   + S
Sbjct: 165 EARMDFLLDENNVPYLGEPNTLPGFTNMS 193


>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 205

 Score = 27.4 bits (60), Expect = 5.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 777 TLTPDDVRHLVVYEDELTQL 796
            LT   V  L+ Y DE  QL
Sbjct: 186 VLTAAGVERLIFYPDEYEQL 205


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 28.2 bits (63), Expect = 5.8
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 59  KSSALVMSEPRMLRSSNRPLFTNSNT 84
             + + +  P+ LR  +R LF  ++ 
Sbjct: 751 DVARVTLGFPKELRVKSRVLFAGASA 776


>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 3/36 (8%), Positives = 10/36 (27%)

Query: 658 RANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPS 693
                  +   ++  +  +     K ++ EV     
Sbjct: 144 VDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSM 179


>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 151

 Score = 26.7 bits (59), Expect = 7.9
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 11/53 (20%)

Query: 445 DRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPI 497
           + LW         + +  FGF+ +  +     K     W +    I W    +
Sbjct: 65  NALW-------WLHSNGNFGFSVQRRLWLASGKEFTKLWPK----IGWKSGNV 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,059,031
Number of extensions: 142652
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 10
Length of query: 842
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 749
Effective length of database: 1,130,706
Effective search space: 846898794
Effective search space used: 846898794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)